RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RPGRIP1L (Mus musculus)

Ensembl gene IDs: ENSMUSG00000033282

Ensembl transcript IDs: ENSMUST00000047783.14, ENSMUST00000132757.2, ENSMUST00000139113.8, ENSMUST00000209564.2

Found 328 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GCAGTTACTGAGAGCTGCAAGTTCTCCTCCAGGGCTGTGTCTGTGTaGGTGGAACCCCCACTTCCCAGCCATCCTCTACAGAGCAAGCCT +
Preference number: 1 (lower is better)
Translates to: AVTESCKFSSRAVSV*VEPPLPSHPLQSKP
Trigger: AGGCTTGCTCTGTAGAGGATGGCTGGGAAGTGGGGGTTCCACTCACACAGACACAGCCCTGGAGGAGAACTTGCAGCTCTCAGTAACTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR GCA 90 bp GCAAGGTCAACATGGGCAACCCCAATGTCCTCACATTCTAGGTCCTaGTCGTCCTCGGGAGGATCACTGACCACGGTGAAGCGCACACTT +
Preference number: 1 (lower is better)
Translates to: ARSTWATPMSSHSRS*SSSGGSLTTVKRTL
Trigger: AAGTGTGCGCTTCACCGTGGTCAGTGATCCTCCCGAGGACGAGCAGGACCTAGAATGTGAGGACATTGGGGTTGCCCATGTTGACCTTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR GCA 90 bp AGGCGCTCCTCTACTCTCCTTTCTGAAAACCTCACCGAGTGCAGCTaGTTCTCAAGGCTGCAGCACTTCAGACGCTGCTCCTTAAGCTGC +
Preference number: 1 (lower is better)
Translates to: RRSSTLLSENLTECS*FSRLQHFRRCSLSC
Trigger: GCAGCTTAAGGAGCAGCGTCTGAAGTGCTGCAGCCTTGAGAAGCAGCTGCACTCGGTGAGGTTTTCAGAAAGGAGAGTAGAGGAGCGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR CCA 90 bp TTACTGAGAGCTGCAAGTTCTCCTCCAGGGCTGTGTCTGTGTGAGTaGAACCCCCACTTCCCAGCCATCCTCTACAGAGCAAGCCTGGTT +
Preference number: 1 (lower is better)
Translates to: LLRAASSPPGLCLCE*NPHFPAILYRASLV
Trigger: AACCAGGCTTGCTCTGTAGAGGATGGCTGGGAAGTGGGGGTTCCACTCACACAGACACAGCCCTGGAGGAGAACTTGCAGCTCTCAGTAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR TCA 90 bp TCAGCATTGATGTCACTCTCCTGGTTGAAGAACTTCAGGCGGCTCTaGAGCTCATGCAGCCGCTGCTTTTGCTGCAGACACTGCAGCTGT +
Preference number: 1 (lower is better)
Translates to: SALMSLSWLKNFRRL*SSCSRCFCCRHCSC
Trigger: ACAGCTGCAGTGTCTGCAGCAAAAGCAGCGGCTGCATGAGCTTCAGAGCCGCCTGAAGTTCTTCAACCAGGAGAGTGACATCAATGCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR GCA 90 bp AGCTGCTTCTCAAGGCTGCAGCACTTCAGACGCTGCTCCTTAAGCTaGTTGTTCAGCTCATCTCCATTGGCCATCAAGGCATCATGGCTG +
Preference number: 1 (lower is better)
Translates to: SCFSRLQHFRRCSLS*LFSSSPLAIKASWL
Trigger: CAGCCATGATGCCTTGATGGCCAATGGAGATGAGCTGAACAAGCAGCTTAAGGAGCAGCGTCTGAAGTGCTGCAGCCTTGAGAAGCAGCT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR TCA 90 bp TCATCTGCTGCTCCTTTAACTTCCACTGCTCTTCATGGGCAGCACTaGAGGCGCTCCTCTACTCTCCTTTCTGAAAACCTCACCGAGTGC +
Preference number: 1 (lower is better)
Translates to: SSAAPLTSTALHGQH*RRSSTLLSENLTEC
Trigger: GCACTCGGTGAGGTTTTCAGAAAGGAGAGTAGAGGAGCGCCTTCAGTGCTGCCCATGAAGAGCAGTGGAAGTTAAAGGAGCAGCAGATGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR GCA 90 bp GTTGCCGTCTGTGGACTCTGCTGGGCTGATCTGAGCAGTTGTGGCTaGTTGCTGACTCGACAATTGCATTTTCTCTGGCTTCTTAAAATT +
Preference number: 1 (lower is better)
Translates to: VAVCGLCWADLSSCG*LLTRQLHFLWLLKI
Trigger: AATTTTAAGAAGCCAGAGAAAATGCAATTGTCGAGTCAGCAAGCAGCCACAACTGCTCAGATCAGCCCAGCAGAGTCCACAGACGGCAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR CCA 90 bp AGGACAGGGGTGCCCAGTGGTACAGACAGAATTTATAGAGTTCTGTaGTCAGATCATACTCTACTGGTCCCACAGAGTGCGCCAACAAAT +
Preference number: 1 (lower is better)
Translates to: RTGVPSGTDRIYRVL*SDHTLLVPQSAPTN
Trigger: ATTTGTTGGCGCACTCTGTGGGACCAGTAGAGTATGATCTGACCACAGAACTCTATAAATTCTGTCTGTACCACTGGGCACCCCTGTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR TCA 90 bp TGCCACCGTCTGTTCGGGCATCGAGAACATCAATATCTTGCTCTATaGTGTCTCTTCCTTTCTGAAACAGGTCAGCAAGGTCAACATGGG +
Preference number: 1 (lower is better)
Translates to: CHRLFGHREHQYLAL*CLFLSETGQQGQHG
Trigger: CCCATGTTGACCTTGCTGACCTGTTTCAGAAAGGAAGAGACATCATAGAGCAAGATATTGATGTTCTCGATGCCCGAACAGACGGTGGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR GCA 90 bp TTTTACTGTAACATGAAGTTCATTCAAGTTGCCGTCTGTGGACTCTaGTGGGCTGATCTGAGCAGTTGTGGCTGCTTGCTGACTCGACAA +
Preference number: 1 (lower is better)
Translates to: FYCNMKFIQVAVCGL*WADLSSCGCLLTRQ
Trigger: TTGTCGAGTCAGCAAGCAGCCACAACTGCTCAGATCAGCCCAGCAGAGTCCACAGACGGCAACTTGAATGAACTTCATGTTACAGTAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR CCA 90 bp ATCCATATTCATCGGCACTGGGAAACACATGTGGTCATCAAACTGTaGGTCATTGCTACTGGGAACGATGGCGGTATCATGGTCTGGAAA +
Preference number: 1 (lower is better)
Translates to: IHIHRHWETHVVIKL*VIATGNDGGIMVWK
Trigger: TTTCCAGACCATGATACCGCCATCGTTCCCAGTAGCAATGACCCACAGTTTGATGACCACATGTGTTTCCCAGTGCCGATGAATATGGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR TCA 90 bp ATCTCTGCCAAGTGCTCTAACTCTTCTATCTGGCCTCTCTGTGACTaGATAACATTTTCCCTCTCCTTGTCTGGCAGCATCCTAATGCAG +
Preference number: 1 (lower is better)
Translates to: ISAKCSNSSIWPLCD*ITFSLSLSGSILMQ
Trigger: CTGCATTAGGATGCTGCCAGACAAGGAGAGGGAAAATGTTATTCAGTCACAGAGAGGCCAGATAGAAGAGTTAGAGCACTTGGCAGAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR GCA 90 bp TCATCGGCACTGGGAAACACATGTGGTCATCAAACTGTGGGTCATTaGTACTGGGAACGATGGCGGTATCATGGTCTGGAAAATCAAAAA +
Preference number: 1 (lower is better)
Translates to: SSALGNTCGHQTVGH*YWERWRYHGLENQK
Trigger: TTTTTGATTTTCCAGACCATGATACCGCCATCGTTCCCAGTAGCAATGACCCACAGTTTGATGACCACATGTGTTTCCCAGTGCCGATGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR CCA 90 bp ATCCTTGAGCTTTCATGCGAGCATTTTCTTAGAAGCGGATGCCTCTaGAACAGGTTCTTTCAGGCCTCCAAGTCCTTTCTATTTTGCTCG +
Preference number: 1 (lower is better)
Translates to: ILELSCEHFLRSGCL*NRFFQASKSFLFCS
Trigger: CGAGCAAAATAGAAAGGACTTGGAGGCCTGAAAGAACCTGTTCCAGAGGCATCCGCTTCTAAGAAAATGCTCGCATGAAAGCTCAAGGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR TCA 90 bp TTTTGTTGTGGGAACATTGGTGCACGCAGAGTCTCCCAAATCACATaGCCACGTCTCAGCCCACACTTCTTCATGACACATAGAAATTAT +
Preference number: 1 (lower is better)
Translates to: FCCGNIGARRVSQIT*PRLSPHFFMTHRNY
Trigger: ATAATTTCTATGTGTCATGAAGAAGTGTGGGCTGAGACGTGGTCATGTGATTTGGGAGACTCTGCGTGCACCAATGTTCCCACAACAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR GCA 90 bp AATCTCATCCTTGAGCTTTCATGCGAGCATTTTCTTAGAAGCGGATaGCTCTGGAACAGGTTCTTTCAGGCCTCCAAGTCCTTTCTATTT +
Preference number: 1 (lower is better)
Translates to: NLILELSCEHFLRSG*LWNRFFQASKSFLF
Trigger: AAATAGAAAGGACTTGGAGGCCTGAAAGAACCTGTTCCAGAGGCATCCGCTTCTAAGAAAATGCTCGCATGAAAGCTCAAGGATGAGATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR CCA 90 bp AAGCCTCCCAAGGAGGAGTCATCACCGAAGCTGTTGGAGCACAGATaGTTCAGCTATACGCTGATATTCATACTTGCATTTTTGCATTAT +
Preference number: 1 (lower is better)
Translates to: KPPKEESSPKLLEHR*FSYTLIFILAFLHY
Trigger: ATAATGCAAAAATGCAAGTATGAATATCAGCGTATAGCTGAACCATCTGTGCTCCAACAGCTTCGGTGATGACTCCTCCTTGGGAGGCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR TCA 90 bp AGTTCCTGCAGCATGCTTTTCCTTATCCATCAACTCAAATATTCCTaGGATACACTTGTCATGTGCCAGGGAAATCAGAGGCACATTGAC +
Preference number: 1 (lower is better)
Translates to: SSCSMLFLIHQLKYS*DTLVMCQGNQRHID
Trigger: GTCAATGTGCCTCTGATTTCCCTGGCACATGACAAGTGTATCTCAGGAATATTTGAGTTGATGGATAAGGAAAAGCATGCTGCAGGAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR TCA 90 bp GCTCCCTCCCAGCAACCGATGAATTATAGATTACACACATCAGAGTaGTTACTCAAAATCTCATCCTTGAGCTTTCATGCGAGCATTTTC +
Preference number: 1 (lower is better)
Translates to: APSQQPMNYRLHTSE*LLKISSLSFHASIF
Trigger: GAAAATGCTCGCATGAAAGCTCAAGGATGAGATTTTGAGTAATCACTCTGATGTGTGTAATCTATAATTCATCGGTTGCTGGGAGGGAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047783.14
ENSMUST00000139113.8
3UTR TCA 90 bp CTCTATTTATATTTCCAAACTAAAAGCATTACAGCTCTAGAGTGCTaGGTGTACTGTGCAGTTACTGAGAGCTGCAAGTTCTCCTCCAGG +
Preference number: 1 (lower is better)
Translates to: LYLYFQTKSITALEC*VYCAVTESCKFSSR
Trigger: CCTGGAGGAGAACTTGCAGCTCTCAGTAACTGCACAGTACACTCAGCACTCTAGAGCTGTAATGCTTTTAGTTTGGAAATATAAATAGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR TCA 90 bp CTCCTGGGTATCACTATCATCAAAAACATAGAAACTCAGAGACTCTaGCTTAAGGTAGCGATCCAAATCCATATTCATCGGCACTGGGAA +
Preference number: 1 (lower is better)
Translates to: LLGITIIKNIETQRL*LKVAIQIHIHRHWE
Trigger: TTCCCAGTGCCGATGAATATGGATTTGGATCGCTACCTTAAGTCAGAGTCTCTGAGTTTCTATGTTTTTGATGATAGTGATACCCAGGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR CCA 90 bp GTACAGACAGAATTTATAGAGTTCTGTGGTCAGATCATACTCTACTaGTCCCACAGAGTGCGCCAACAAATTAATATCGTACGGATGTCA +
Preference number: 1 (lower is better)
Translates to: VQTEFIEFCGQIILY*SHRVRQQINIVRMS
Trigger: TGACATCCGTACGATATTAATTTGTTGGCGCACTCTGTGGGACCAGTAGAGTATGATCTGACCACAGAACTCTATAAATTCTGTCTGTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR TCA 90 bp TTTCTTCTGATGGCTGTTTGGTATTTGTGGAGACAGAACTTGGAATaGTACAGTCATCACTGTCTGAAGCTGATCTGTCTTCATCTTCTG +
Preference number: 1 (lower is better)
Translates to: FLLMAVWYLWRQNLE*YSHHCLKLICLHLL
Trigger: CAGAAGATGAAGACAGATCAGCTTCAGACAGTGATGACTGTATCATTCCAAGTTCTGTCTCCACAAATACCAAACAGCCATCAGAAGAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR GCA 90 bp ATAGAAAGCGTAGGTACAGAAAGTGACAAGTTCTTTATCACCAGATaGCCGAAGGACTTCAGAAGAAAAGGTGACTTTGTTGATGTGGAT +
Preference number: 1 (lower is better)
Translates to: IESVGTESDKFFITR*PKDFRRKGDFVDVD
Trigger: ATCCACATCAACAAAGTCACCTTTTCTTCTGAAGTCCTTCGGGCATCTGGTGATAAAGAACTTGTCACTTTCTGTACCTACGCTTTCTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR TCA 90 bp AGAATCATTAAGGTTCAGAGCTATGATCTCAATCCGAATTTCTTCTaGTGGCTGTTTGGTATTTGTGGAGACAGAACTTGGAATGATACA +
Preference number: 1 (lower is better)
Translates to: RIIKVQSYDLNPNFF*WLFGICGDRTWNDT
Trigger: TGTATCATTCCAAGTTCTGTCTCCACAAATACCAAACAGCCATCAGAAGAAATTCGGATTGAGATCATAGCTCTGAACCTTAATGATTCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR TCA 90 bp CTGCTCGTCCTCGGGAGGATCACTGACCACGGTGAAGCGCACACTTCTGTGAGGGGAAGCCACACTTCCTaGGGCAAGCTGGCCCTCAGA +
Preference number: 2 (lower is better)
Translates to: LLVLGRITDHGEAHTSVRGSHTS*GKLALR
Trigger: TCTGAGGGCCAGCTTGCCTCAGGAAGTGTGGCTTCC...CCTCACAGAAGTGTGCGCTTCACCGTGGTCAGTGATCCTCCCGAGGACGAGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR TCA 90 bp CCACTTAGGAGCACTGAAGTCCTATGGGGTGGCAGTCATGGGGAGGATTGGATAAACTTCAGGCGGCTCTaGAGCTCATGCAGCCGCTGC +
Preference number: 2 (lower is better)
Translates to: PLRSTEVLWGGSHGEDWINFRRL*SSCSRC
Trigger: GCAGCGGCTGCATGAGCTTCAGAGCCGCCTGAAGTT...TATCCAATCCTCCCCATGACTGCCACCCCATAGGACTTCAGTGCTCCTAAGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR CCA 90 bp CCACTTAGGAGCACTGAAGTCCTATGGGGTGGCAGTCATGGGGAGGATTGGATACAGTACCGGGAACGCTaGCAGGAGTCTGAGGCTGAG +
Preference number: 2 (lower is better)
Translates to: PLRSTEVLWGGSHGEDWIQYRER*QESEAE
Trigger: CTCAGCCTCAGACTCCTGCCAGCGTTCCCGGTACTG...TATCCAATCCTCCCCATGACTGCCACCCCATAGGACTTCAGTGCTCCTAAGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR-3UTR TCA 90 bp GGGCTGTGTCTGTGTGAGTGGAACCCCCACTTCCCAGCCATCCTCTACAGAGCAGTGAGGACACTCACTTaGTCTCTCTCTTCAGAACCC +
Preference number: 2 (lower is better)
Translates to: GLCLCEWNPHFPAILYRAVRTLT*SLSSEP
Trigger: GGGTTCTGAAGAGAGAGATCAAGTGAGTGTCCTCAC...TGCTCTGTAGAGGATGGCTGGGAAGTGGGGGTTCCACTCACACAGACACAGCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR-3UTR GCA 90 bp CCACTTAGGAGCACTGAAGTCCTATGGGGTGGCAGTCATGGGGAGGATTGGATAGCCGTCTGTGGACTCTaGTGGGCTGATCTGAGCAGT +
Preference number: 2 (lower is better)
Translates to: PLRSTEVLWGGSHGEDWIAVCGL*WADLSS
Trigger: ACTGCTCAGATCAGCCCAGCAGAGTCCACAGACGGC...TATCCAATCCTCCCCATGACTGCCACCCCATAGGACTTCAGTGCTCCTAAGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR CCA 90 bp GGGCTGTGTCTGTGTGAGTGGAACCCCCACTTCCCAGCCATCCTCTACAGAGCACAGATCATACTCTACTaGTCCCACAGAGTGCGCCAA +
Preference number: 2 (lower is better)
Translates to: GLCLCEWNPHFPAILYRAQIILY*SHRVRQ
Trigger: TTGGCGCACTCTGTGGGACCAGTAGAGTATGATCTG...TGCTCTGTAGAGGATGGCTGGGAAGTGGGGGTTCCACTCACACAGACACAGCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR-3UTR CCA 90 bp CCACTTAGGAGCACTGAAGTCCTATGGGGTGGCAGTCATGGGGAGGATTGGATATTCCACTGCTCTTCATaGGCAGCACTGAAGGCGCTC +
Preference number: 2 (lower is better)
Translates to: PLRSTEVLWGGSHGEDWIFHCSS*AALKAL
Trigger: GAGCGCCTTCAGTGCTGCCCATGAAGAGCAGTGGAA...TATCCAATCCTCCCCATGACTGCCACCCCATAGGACTTCAGTGCTCCTAAGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR CCA 90 bp CTGCTCGTCCTCGGGAGGATCACTGACCACGGTGAAGCGCACACTTCTGTGAGGGACTCGGGTGTGATATaGTATCTGCAAAAGAGACCT +
Preference number: 2 (lower is better)
Translates to: LLVLGRITDHGEAHTSVRDSGVI*YLQKRP
Trigger: AGGTCTCTTTTGCAGATACCATATCACACCCGAGTC...CCTCACAGAAGTGTGCGCTTCACCGTGGTCAGTGATCCTCCCGAGGACGAGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR GCA 90 bp GAACCCCCACTTCCCAGCCATCCTCTACAGAGCAAGCCTGGTTCACAGAGGACATGGAGAGCCTTTGTCTaGAGATGTTTGTGGTCACTG +
Preference number: 2 (lower is better)
Translates to: EPPLPSHPLQSKPGSQRTWRAFV*RCLWSL
Trigger: CAGTGACCACAAACATCTGCAGACAAAGGCTCTCCA...TGTCCTCTGTGAACCAGGCTTGCTCTGTAGAGGATGGCTGGGAAGTGGGGGTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR-3UTR GCA 90 bp CCACTTAGGAGCACTGAAGTCCTATGGGGTGGCAGTCATGGGGAGGATTGGATAGAAAACCTCACCGAGTaGAGCTGCTTCTCAAGGCTG +
Preference number: 2 (lower is better)
Translates to: PLRSTEVLWGGSHGEDWIENLTE*SCFSRL
Trigger: CAGCCTTGAGAAGCAGCTGCACTCGGTGAGGTTTTC...TATCCAATCCTCCCCATGACTGCCACCCCATAGGACTTCAGTGCTCCTAAGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR CCA 90 bp GAACCCCCACTTCCCAGCCATCCTCTACAGAGCAAGCCTGGTTCACAGAGGACAGTCTGCAGATGTTTGTaGTCACTGGAAGGTTCCAGA +
Preference number: 2 (lower is better)
Translates to: EPPLPSHPLQSKPGSQRTVCRCL*SLEGSR
Trigger: TCTGGAACCTTCCAGTGACCACAAACATCTGCAGAC...TGTCCTCTGTGAACCAGGCTTGCTCTGTAGAGGATGGCTGGGAAGTGGGGGTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR-3UTR CCA 90 bp CCACTTAGGAGCACTGAAGTCCTATGGGGTGGCAGTCATGGGGAGGATTGGATAAGAAGCGGATGCCTCTaGAACAGGTTCTTTCAGGCC +
Preference number: 2 (lower is better)
Translates to: PLRSTEVLWGGSHGEDWIRSGCL*NRFFQA
Trigger: GGCCTGAAAGAACCTGTTCCAGAGGCATCCGCTTCT...TATCCAATCCTCCCCATGACTGCCACCCCATAGGACTTCAGTGCTCCTAAGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR CAA 90 bp TGCTTCTCAAGGCTGCAGCACTTCAGACGCTGCTCCTTAAGCTGCTaGTTCAGCTCATCTCCATTGGCCATCAAGGCATCATGGCTGATC +
Preference number: 2 (lower is better)
Translates to: CFSRLQHFRRCSLSC*FSSSPLAIKASWLI
Trigger: GATCAGCCATGATGCCTTGATGGCCAATGGAGATGAGCTGAACAAGCAGCTTAAGGAGCAGCGTCTGAAGTGCTGCAGCCTTGAGAAGCA
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR TCA 90 bp GGGCTGTGTCTGTGTGAGTGGAACCCCCACTTCCCAGCCATCCTCTACAGAGCACCTCCCAGCAACCGATaGATTATAGATTACACACAT +
Preference number: 2 (lower is better)
Translates to: GLCLCEWNPHFPAILYRAPPSNR*IIDYTH
Trigger: ATGTGTGTAATCTATAATTCATCGGTTGCTGGGAGG...TGCTCTGTAGAGGATGGCTGGGAAGTGGGGGTTCCACTCACACAGACACAGCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR-3UTR TCA 90 bp GGCGGCTCTGAAGCTCATGCAGCCGCTGCTTTTGCTGCAGACACTGCAGCTGTATATCTGGCCTCTCTGTaGCTGAATAACATTTTCCCT +
Preference number: 2 (lower is better)
Translates to: GGSEAHAAAAFAADTAAVYLASL*LNNIFP
Trigger: AGGGAAAATGTTATTCAGTCACAGAGAGGCCAGATA...TACAGCTGCAGTGTCTGCAGCAAAAGCAGCGGCTGCATGAGCTTCAGAGCCGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR TCA 90 bp CTGCTCGTCCTCGGGAGGATCACTGACCACGGTGAAGCGCACACTTCTGTGAGGCAACTCAAATATTCCTaGGATACACTTGTCATGTGC +
Preference number: 2 (lower is better)
Translates to: LLVLGRITDHGEAHTSVRQLKYS*DTLVMC
Trigger: GCACATGACAAGTGTATCTCAGGAATATTTGAGTTG...CCTCACAGAAGTGTGCGCTTCACCGTGGTCAGTGATCCTCCCGAGGACGAGCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR GCA 90 bp GGCGGCTCTGAAGCTCATGCAGCCGCTGCTTTTGCTGCAGACACTGCAGCTGTAATCTGCACTTTCATCTaGTGCTCCTTTAACTTCCAC +
Preference number: 2 (lower is better)
Translates to: GGSEAHAAAAFAADTAAVICTFI*CSFNFH
Trigger: GTGGAAGTTAAAGGAGCAGCAGATGAAAGTGCAGAT...TACAGCTGCAGTGTCTGCAGCAAAAGCAGCGGCTGCATGAGCTTCAGAGCCGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR GCA 90 bp CTCCGGGTAAAGGCCTCGCACTATGGGAGTAGTCTGCAGTTCAAAGTCATAGAATGCAGCCGCTGCTTTTaGTGCAGACACTGCAGCTGT +
Preference number: 2 (lower is better)
Translates to: LRVKASHYGSSLQFKVIECSRCF*CRHCSC
Trigger: ACAGCTGCAGTGTCTGCAGCAAAAGCAGCGGCTGCA...TTCTATGACTTTGAACTGCAGACTACTCCCATAGTGCGAGGCCTTTACCCGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR CCA 90 bp CCACTTAGGAGCACTGAAGTCCTATGGGGTGGCAGTCATGGGGAGGATTGGATATCTACAGAGCAAGCCTaGTTCACAGAGGACAGCACA +
Preference number: 2 (lower is better)
Translates to: PLRSTEVLWGGSHGEDWISTEQA*FTEDST
Trigger: TGTGCTGTCCTCTGTGAACCAGGCTTGCTCTGTAGA...TATCCAATCCTCCCCATGACTGCCACCCCATAGGACTTCAGTGCTCCTAAGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR-3UTR CCA 90 bp CTGCTCGTCCTCGGGAGGATCACTGACCACGGTGAAGCGCACACTTCTGTGAGGTACTGTGCCAAAATTTaGGATGTCTCCTTTAGTTCC +
Preference number: 2 (lower is better)
Translates to: LLVLGRITDHGEAHTSVRYCAKI*DVSFSS
Trigger: GGAACTAAAGGAGACATCCCAAATTTTGGCACAGTA...CCTCACAGAAGTGTGCGCTTCACCGTGGTCAGTGATCCTCCCGAGGACGAGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR TCA 90 bp AGCTGCTTCTCAAGGCTGCAGCACTTCAGACGCTGCTCCTTAAGCTGCTTGTTCAGCATCCTAATGCAGTaGGCCTTGGGAAAACTGCTA +
Preference number: 2 (lower is better)
Translates to: SCFSRLQHFRRCSLSCLFSILMQ*ALGKLL
Trigger: TAGCAGTTTTCCCAAGGCTCACTGCATTAGGATGCT...GAACAAGCAGCTTAAGGAGCAGCGTCTGAAGTGCTGCAGCCTTGAGAAGCAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR TCA 90 bp CTGCTCGTCCTCGGGAGGATCACTGACCACGGTGAAGCGCACACTTCTGTGAGGAATCCGAATTTCTTCTaGTGGCTGTTTGGTATTTGT +
Preference number: 2 (lower is better)
Translates to: LLVLGRITDHGEAHTSVRNPNFF*WLFGIC
Trigger: ACAAATACCAAACAGCCATCAGAAGAAATTCGGATT...CCTCACAGAAGTGTGCGCTTCACCGTGGTCAGTGATCCTCCCGAGGACGAGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR GCA 90 bp CCACTTAGGAGCACTGAAGTCCTATGGGGTGGCAGTCATGGGGAGGATTGGATAGATACACTTGTCATGTaGCAGGGAAATCAGAGGCAC +
Preference number: 2 (lower is better)
Translates to: PLRSTEVLWGGSHGEDWIDTLVM*QGNQRH
Trigger: GTGCCTCTGATTTCCCTGGCACATGACAAGTGTATC...TATCCAATCCTCCCCATGACTGCCACCCCATAGGACTTCAGTGCTCCTAAGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR CCA 90 bp AGCTGCTTCTCAAGGCTGCAGCACTTCAGACGCTGCTCCTTAAGCTGCTTGTTCGCCATCAAGGCATCATaGCTGATCCTGAGTGTTCTT +
Preference number: 2 (lower is better)
Translates to: SCFSRLQHFRRCSLSCLFAIKAS*LILSVL
Trigger: AAGAACACTCAGGATCAGCCATGATGCCTTGATGGC...GAACAAGCAGCTTAAGGAGCAGCGTCTGAAGTGCTGCAGCCTTGAGAAGCAGCT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR CAA 90 bp CACTTCAGACGCTGCTCCTTAAGCTGCTTGTTCAGCTCATCTCCATaGGCCATCAAGGCATCATGGCTGATCCTGAGTGTTCTTTGCTTC +
Preference number: 2 (lower is better)
Translates to: HFRRCSLSCLFSSSP*AIKASWLILSVLCF
Trigger: GAAGCAAAGAACACTCAGGATCAGCCATGATGCCTTGATGGCCAATGGAGATGAGCTGAACAAGCAGCTTAAGGAGCAGCGTCTGAAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR CAA 90 bp GCCGATGGTGCCACCGTCTGTTCGGGCATCGAGAACATCAATATCTaGCTCTATGATGTCTCTTCCTTTCTGAAACAGGTCAGCAAGGTC +
Preference number: 2 (lower is better)
Translates to: ADGATVCSGIENINI*LYDVSSFLKQVSKV
Trigger: GACCTTGCTGACCTGTTTCAGAAAGGAAGAGACATCATAGAGCAAGATATTGATGTTCTCGATGCCCGAACAGACGGTGGCACCATCGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR TCA 90 bp CCACTTAGGAGCACTGAAGTCCTATGGGGTGGCAGTCATGGGGAGGATTGGATAACGTGGACCAGATACTaGGAAGTGAAGTTATACTCC +
Preference number: 2 (lower is better)
Translates to: PLRSTEVLWGGSHGEDWITWTRY*EVKLYS
Trigger: GGAGTATAACTTCACTTCTCAGTATCTGGTCCACGT...TATCCAATCCTCCCCATGACTGCCACCCCATAGGACTTCAGTGCTCCTAAGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR TCA 90 bp CCACTTAGGAGCACTGAAGTCCTATGGGGTGGCAGTCATGGGGAGGATTGGATAGAAACTCAGAGACTCTaGCTTAAGGTAGCGATCCAA +
Preference number: 2 (lower is better)
Translates to: PLRSTEVLWGGSHGEDWIETQRL*LKVAIQ
Trigger: TTGGATCGCTACCTTAAGTCAGAGTCTCTGAGTTTC...TATCCAATCCTCCCCATGACTGCCACCCCATAGGACTTCAGTGCTCCTAAGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR TCA 90 bp CCACTTAGGAGCACTGAAGTCCTATGGGGTGGCAGTCATGGGGAGGATTGGATAAGGATACGCAACAGCTaGCAGACCATTTTCTGGTTT +
Preference number: 2 (lower is better)
Translates to: PLRSTEVLWGGSHGEDWIRIRNS*QTIFWF
Trigger: AAACCAGAAAATGGTCTGTCAGCTGTTGCGTATCCT...TATCCAATCCTCCCCATGACTGCCACCCCATAGGACTTCAGTGCTCCTAAGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR CAA 90 bp TCTCAACTGACACGCTGCAATTGTTTCGTAATCTGTGCTGTGGGCTaGGTGGAGCTCCAGCGTGACAGTGTTCTTCTGAATGTACTGCAA +
Preference number: 2 (lower is better)
Translates to: SQLTRCNCFVICAVG*VELQRDSVLLNVLQ
Trigger: TTGCAGTACATTCAGAAGAACACTGTCACGCTGGAGCTCCACCAAGCCCACAGCACAGATTACGAAACAATTGCAGCGTGTCAGTTGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR TCA 90 bp AATATTATGGGTCTTAATGACACTGTAGCTGCACAAAGCCAAAGAAAGCTAGAATGGAGATGGCAGGCCTaGGGACAGGGGTGCCCAGTG +
Preference number: 2 (lower is better)
Translates to: NIMGLNDTVAAQSQRKLEWRWQA*GQGCPV
Trigger: CACTGGGCACCCCTGTCCTCAGGCCTGCCATCTCCA...TTCTAGCTTTCTTTGGCTTTGTGCAGCTACAGTGTCATTAAGACCCATAATATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR-3UTR TCA 90 bp CCACTTAGGAGCACTGAAGTCCTATGGGGTGGCAGTCATGGGGAGGATTGGATATCTTTTCTCTTCAACTaGGTTTTCAGGATCTCTGCC +
Preference number: 2 (lower is better)
Translates to: PLRSTEVLWGGSHGEDWISFLFN*VFRISA
Trigger: GGCAGAGATCCTGAAAACTCAGTTGAAGAGAAAAGA...TATCCAATCCTCCCCATGACTGCCACCCCATAGGACTTCAGTGCTCCTAAGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR TCA 90 bp AAGTCTCGGGACTCGGGTGTGATATGGTATCTGCAAAAGAGACCTTTTTGTCCAGGTGGAGCTCCAGCGTaGCAGTGTTCTTCTGAATGT +
Preference number: 2 (lower is better)
Translates to: KSRDSGVIWYLQKRPFCPGGAPA*QCSSEC
Trigger: ACATTCAGAAGAACACTGTCACGCTGGAGCTCCACC...TGGACAAAAAGGTCTCTTTTGCAGATACCATATCACACCCGAGTCCCGAGACTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR TCA 90 bp GAGATGTCGTCTTCTTTCCCTTGTTGCATTTCCCCCACATTTTCTTCTACCTTATCTGCTGGGCTGATCTaGGCAGTTGTGGCTGCTTGC +
Preference number: 2 (lower is better)
Translates to: EMSSSFPCCISPTFSSTLSAGLI*AVVAAC
Trigger: GCAAGCAGCCACAACTGCTCAGATCAGCCCAGCAGA...TAAGGTAGAAGAAAATGTGGGGGAAATGCAACAAGGGAAAGAAGACGACATCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR TCA 90 bp TTAAGATGTCTCTCACCGCTGGGTTGTTTTCTTTATCCAGGTAGATCACATTGGTGGACTCTGCTGGGCTaGTCTGAGCAGTTGTGGCTG +
Preference number: 2 (lower is better)
Translates to: LRCLSPLGCFLYPGRSHWWTLLG*SEQLWL
Trigger: CAGCCACAACTGCTCAGATCAGCCCAGCAGAGTCCA...CCAATGTGATCTACCTGGATAAAGAAAACAACCCAGCGGTGAGAGACATCTTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR CCA 90 bp TGGGAACTCTTAATCGGAACCAGTATTCTACTGTGCCAAAATTTGGGATGTCTCTCTGTGCTGTGGGCTTaGTGGAGCTCCAGCGTGACA +
Preference number: 2 (lower is better)
Translates to: WELLIGTSILLCQNLGCLSVLWA*WSSSVT
Trigger: TGTCACGCTGGAGCTCCACCAAGCCCACAGCACAGA...GAGACATCCCAAATTTTGGCACAGTAGAATACTGGTTCCGATTAAGAGTTCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR GCA 90 bp TTAAGATGTCTCTCACCGCTGGGTTGTTTTCTTTATCCAGGTAGATCACATTGGAGCTCATGCAGCCGCTaGTTTTGCTGCAGACACTGC +
Preference number: 2 (lower is better)
Translates to: LRCLSPLGCFLYPGRSHWSSCSR*FCCRHC
Trigger: GCAGTGTCTGCAGCAAAAGCAGCGGCTGCATGAGCT...CCAATGTGATCTACCTGGATAAAGAAAACAACCCAGCGGTGAGAGACATCTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR GCA 90 bp CCACTTAGGAGCACTGAAGTCCTATGGGGTGGCAGTCATGGGGAGGATTGGATATTCTTGTACTGTTTCTaGATGAGTTGCTTGAAGCTC +
Preference number: 2 (lower is better)
Translates to: PLRSTEVLWGGSHGEDWIFLYCF*MSCLKL
Trigger: GAGCTTCAAGCAACTCATGCAGAAACAGTACAAGAA...TATCCAATCCTCCCCATGACTGCCACCCCATAGGACTTCAGTGCTCCTAAGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR CCA 90 bp CCACTTAGGAGCACTGAAGTCCTATGGGGTGGCAGTCATGGGGAGGATTGGATAGTGGTAACAAATGAATaGCAGGAACAGCAGAATTTC +
Preference number: 2 (lower is better)
Translates to: PLRSTEVLWGGSHGEDWIVVTNE*QEQQNF
Trigger: GAAATTCTGCTGTTCCTGCCATTCATTTGTTACCAC...TATCCAATCCTCCCCATGACTGCCACCCCATAGGACTTCAGTGCTCCTAAGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR-3UTR CCA 90 bp AAGTCTCGGGACTCGGGTGTGATATGGTATCTGCAAAAGAGACCTTTTTGTCCATTCCCTCTCCTTGTCTaGCAGCATCCTAATGCAGTG +
Preference number: 2 (lower is better)
Translates to: KSRDSGVIWYLQKRPFCPFPLLV*QHPNAV
Trigger: CACTGCATTAGGATGCTGCCAGACAAGGAGAGGGAA...TGGACAAAAAGGTCTCTTTTGCAGATACCATATCACACCCGAGTCCCGAGACTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR CAA 90 bp GATGTCATTTCAAAGCCTCCCAAGGAGGAGTCATCACCGAAGCTGTaGGAGCACAGATGGTTCAGCTATACGCTGATATTCATACTTGCA +
Preference number: 2 (lower is better)
Translates to: DVISKPPKEESSPKL*EHRWFSYTLIFILA
Trigger: TGCAAGTATGAATATCAGCGTATAGCTGAACCATCTGTGCTCCAACAGCTTCGGTGATGACTCCTCCTTGGGAGGCTTTGAAATGACATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR CAA 90 bp TTCATCGGCACTGGGAAACACATGTGGTCATCAAACTGTGGGTCATaGCTACTGGGAACGATGGCGGTATCATGGTCTGGAAAATCAAAA +
Preference number: 2 (lower is better)
Translates to: FIGTGKHMWSSNCGS*LLGTMAVSWSGKSK
Trigger: TTTTGATTTTCCAGACCATGATACCGCCATCGTTCCCAGTAGCAATGACCCACAGTTTGATGACCACATGTGTTTCCCAGTGCCGATGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR TCA 90 bp ATATCCTTTAACTGGGCTTCAAGCTTTTGGATGCGTGCAGCCCTGATATCGAGATGGCCTCTCTGTGACTaGATAACATTTTCCCTCTCC +
Preference number: 2 (lower is better)
Translates to: ISFNWASSFWMRAALISRWPLCD*ITFSLS
Trigger: GGAGAGGGAAAATGTTATTCAGTCACAGAGAGGCCA...TCTCGATATCAGGGCTGCACGCATCCAAAAGCTTGAAGCCCAGTTAAAGGATAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR TCA 90 bp GATGTCGTCTTCTTTCCCTTGTTGCATTTCCCCCACATTTTCTTCTACCTTAGCCTCTACTCTCCTTTCTaGAAACCTCACCGAGTGCAG +
Preference number: 2 (lower is better)
Translates to: DVVFFPLLHFPHIFFYLSLYSPF*KPHRVQ
Trigger: CTGCACTCGGTGAGGTTTTCAGAAAGGAGAGTAGAG...GCTAAGGTAGAAGAAAATGTGGGGGAAATGCAACAAGGGAAAGAAGACGACATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR TCA 90 bp CCACTTAGGAGCACTGAAGTCCTATGGGGTGGCAGTCATGGGGAGGATTGGATACTGATATCGAGAAGATaGACATATTGTTCCACTTTG +
Preference number: 2 (lower is better)
Translates to: PLRSTEVLWGGSHGEDWILISRR*TYCSTL
Trigger: CAAAGTGGAACAATATGTTCATCTTCTCGATATCAG...TATCCAATCCTCCCCATGACTGCCACCCCATAGGACTTCAGTGCTCCTAAGTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR GCA 90 bp GATGTCGTCTTCTTTCCCTTGTTGCATTTCCCCCACATTTTCTTCTACCTTAGCCGCTGCTCCTTAAGCTaGTTGTTCAGCTCATCTCCA +
Preference number: 2 (lower is better)
Translates to: DVVFFPLLHFPHIFFYLSRCSLS*LFSSSP
Trigger: TGGAGATGAGCTGAACAAGCAGCTTAAGGAGCAGCG...GCTAAGGTAGAAGAAAATGTGGGGGAAATGCAACAAGGGAAAGAAGACGACATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR GCA 90 bp ATATCCTTTAACTGGGCTTCAAGCTTTTGGATGCGTGCAGCCCTGATATCGAGATCCTTTAACTTCCACTaGTCTTCATGGGCAGCACTG +
Preference number: 2 (lower is better)
Translates to: ISFNWASSFWMRAALISRSFNFH*SSWAAL
Trigger: CAGTGCTGCCCATGAAGAGCAGTGGAAGTTAAAGGA...TCTCGATATCAGGGCTGCACGCATCCAAAAGCTTGAAGCCCAGTTAAAGGATAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR GCA 90 bp AAGTCTCGGGACTCGGGTGTGATATGGTATCTGCAAAAGAGACCTTTTTGTCCAAAGCTTTTGGATGCGTaGAGCCCTGATATCGAGAAG +
Preference number: 2 (lower is better)
Translates to: KSRDSGVIWYLQKRPFCPKLLDA*SPDIEK
Trigger: CTTCTCGATATCAGGGCTGCACGCATCCAAAAGCTT...TGGACAAAAAGGTCTCTTTTGCAGATACCATATCACACCCGAGTCCCGAGACTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR CCA 90 bp TCATACTCTACTGGTCCCACAGAGTGCGCCAACAAATTAATATCGTACGGATGTCATCACCGAAGCTGTTaGAGCACAGATGGTTCAGCT +
Preference number: 2 (lower is better)
Translates to: SYSTGPTECANKLISYGCHHRSC*STDGSA
Trigger: AGCTGAACCATCTGTGCTCCAACAGCTTCGGTGATG...ACATCCGTACGATATTAATTTGTTGGCGCACTCTGTGGGACCAGTAGAGTATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR-3UTR CCA 90 bp CCACTTAGGAGCACTGAAGTCCTATGGGGTGGCAGTCATGGGGAGGATTGGATACATTTCAATATAACTTaGATAGTTCCTGCAGCATGC +
Preference number: 2 (lower is better)
Translates to: PLRSTEVLWGGSHGEDWIHFNIT*IVPAAC
Trigger: GCATGCTGCAGGAACTATCCAAGTTATATTGAAATG...TATCCAATCCTCCCCATGACTGCCACCCCATAGGACTTCAGTGCTCCTAAGTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR TCA 90 bp CTCCGGGTAAAGGCCTCGCACTATGGGAGTAGTCTGCAGTTCAAAGTCATAGAAATTCCTTTGCAGCACTaGTTCACAGCTCCATTAAAA +
Preference number: 2 (lower is better)
Translates to: LRVKASHYGSSLQFKVIEIPLQH*FTAPLK
Trigger: TTTTAATGGAGCTGTGAATCAGTGCTGCAAAGGAAT...TTCTATGACTTTGAACTGCAGACTACTCCCATAGTGCGAGGCCTTTACCCGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR TCA 90 bp TTAAGATGTCTCTCACCGCTGGGTTGTTTTCTTTATCCAGGTAGATCACATTGGGGATGCGTGCAGCCCTaGTATCGAGAAGATGAACAT +
Preference number: 2 (lower is better)
Translates to: LRCLSPLGCFLYPGRSHWGCVQP*YREDEH
Trigger: ATGTTCATCTTCTCGATATCAGGGCTGCACGCATCC...CCAATGTGATCTACCTGGATAAAGAAAACAACCCAGCGGTGAGAGACATCTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR GCA 90 bp CCACTTAGGAGCACTGAAGTCCTATGGGGTGGCAGTCATGGGGAGGATTGGATAGCTGTTTTAAATTACTaGAGGGAATATTATGGGTCT +
Preference number: 2 (lower is better)
Translates to: PLRSTEVLWGGSHGEDWIAVLNY*REYYGS
Trigger: AGACCCATAATATTCCCTGCAGTAATTTAAAACAGC...TATCCAATCCTCCCCATGACTGCCACCCCATAGGACTTCAGTGCTCCTAAGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR-3UTR GCA 90 bp AAGTCTCGGGACTCGGGTGTGATATGGTATCTGCAAAAGAGACCTTTTTGTCCAAGGATCTCTGCCAAGTaGTCTAACTCTTCTATCTGG +
Preference number: 2 (lower is better)
Translates to: KSRDSGVIWYLQKRPFCPRISAK*SNSSIW
Trigger: CCAGATAGAAGAGTTAGAGCACTTGGCAGAGATCCT...TGGACAAAAAGGTCTCTTTTGCAGATACCATATCACACCCGAGTCCCGAGACTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR GCA 90 bp CCACTTAGGAGCACTGAAGTCCTATGGGGTGGCAGTCATGGGGAGGATTGGATAAGAACATCAATATCTTaGTCTATGATGTCTCTTCCT +
Preference number: 2 (lower is better)
Translates to: PLRSTEVLWGGSHGEDWIRTSIS*SMMSLP
Trigger: AGGAAGAGACATCATAGAGCAAGATATTGATGTTCT...TATCCAATCCTCCCCATGACTGCCACCCCATAGGACTTCAGTGCTCCTAAGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR CCA 90 bp GAGATGTCGTCTTCTTTCCCTTGTTGCATTTCCCCCACATTTTCTTCTACCTTAGTGGGTCATTGCTACTaGGAACGATGGCGGTATCAT +
Preference number: 2 (lower is better)
Translates to: EMSSSFPCCISPTFSSTLVGHCY*ERWRYH
Trigger: ATGATACCGCCATCGTTCCCAGTAGCAATGACCCAC...TAAGGTAGAAGAAAATGTGGGGGAAATGCAACAAGGGAAAGAAGACGACATCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR CCA 90 bp AAGTCTCGGGACTCGGGTGTGATATGGTATCTGCAAAAGAGACCTTTTTGTCCACATATTCATCGGCACTaGGAAACACATGTGGTCATC +
Preference number: 2 (lower is better)
Translates to: KSRDSGVIWYLQKRPFCPHIHRH*ETHVVI
Trigger: GATGACCACATGTGTTTCCCAGTGCCGATGAATATG...TGGACAAAAAGGTCTCTTTTGCAGATACCATATCACACCCGAGTCCCGAGACTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR TCA 90 bp ATATCCTTTAACTGGGCTTCAAGCTTTTGGATGCGTGCAGCCCTGATATCGAGACCTCCCAGCAACCGATaGATTATAGATTACACACAT +
Preference number: 2 (lower is better)
Translates to: ISFNWASSFWMRAALISRPPSNR*IIDYTH
Trigger: ATGTGTGTAATCTATAATTCATCGGTTGCTGGGAGG...TCTCGATATCAGGGCTGCACGCATCCAAAAGCTTGAAGCCCAGTTAAAGGATAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR TCA 90 bp GATGTCGTCTTCTTTCCCTTGTTGCATTTCCCCCACATTTTCTTCTACCTTAGCATTGTCCCGAATATTTaGCCTCTGATCTGTAGCCTG +
Preference number: 2 (lower is better)
Translates to: DVVFFPLLHFPHIFFYLSIVPNI*PLICSL
Trigger: CAGGCTACAGATCAGAGGTCAAATATTCGGGACAAT...GCTAAGGTAGAAGAAAATGTGGGGGAAATGCAACAAGGGAAAGAAGACGACATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR GCA 90 bp TCATACTCTACTGGTCCCACAGAGTGCGCCAACAAATTAATATCGTACGGATGTCAGAGACAATTCCTTTaGAGCACTGATTCACAGCTC +
Preference number: 2 (lower is better)
Translates to: SYSTGPTECANKLISYGCQRQFL*STDSQL
Trigger: GAGCTGTGAATCAGTGCTGCAAAGGAATTGTCTCTG...ACATCCGTACGATATTAATTTGTTGGCGCACTCTGTGGGACCAGTAGAGTATGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR-3UTR GCA 90 bp GATGTCGTCTTCTTTCCCTTGTTGCATTTCCCCCACATTTTCTTCTACCTTAGCCAGAGACAATTCCTTTaGAGCACTGATTCACAGCTC +
Preference number: 2 (lower is better)
Translates to: DVVFFPLLHFPHIFFYLSQRQFL*STDSQL
Trigger: GAGCTGTGAATCAGTGCTGCAAAGGAATTGTCTCTG...GCTAAGGTAGAAGAAAATGTGGGGGAAATGCAACAAGGGAAAGAAGACGACATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR CCA 90 bp GAACGCTGGCAGGAGTCTGAGGCTGAGAACTTTAAAGCTAGTAGATATAAGAGATGCTTTCTGAGGGTCTaGATATCCAGATACATCCCA +
Preference number: 2 (lower is better)
Translates to: ERWQESEAENFKASRYKRCFLRV*ISRYIP
Trigger: TGGGATGTATCTGGATATCCAGACCCTCAGAAAGCA...TCTCTTATATCTACTAGCTTTAAAGTTCTCAGCCTCAGACTCCTGCCAGCGTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR-3UTR CCA 90 bp TTAAGATGTCTCTCACCGCTGGGTTGTTTTCTTTATCCAGGTAGATCACATTGGGTGGTCATCAAACTGTaGGTCATTGCTACTGGGAAC +
Preference number: 2 (lower is better)
Translates to: LRCLSPLGCFLYPGRSHWVVIKL*VIATGN
Trigger: GTTCCCAGTAGCAATGACCCACAGTTTGATGACCAC...CCAATGTGATCTACCTGGATAAAGAAAACAACCCAGCGGTGAGAGACATCTTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR CCA 90 bp GATGTCGTCTTCTTTCCCTTGTTGCATTTCCCCCACATTTTCTTCTACCTTAGCACTGGGAAACACATGTaGTCATCAAACTGTGGGTCA +
Preference number: 2 (lower is better)
Translates to: DVVFFPLLHFPHIFFYLSTGKHM*SSNCGS
Trigger: TGACCCACAGTTTGATGACCACATGTGTTTCCCAGT...GCTAAGGTAGAAGAAAATGTGGGGGAAATGCAACAAGGGAAAGAAGACGACATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR TCA 90 bp GAACGCTGGCAGGAGTCTGAGGCTGAGAACTTTAAAGCTAGTAGATATAAGAGACCTGTTTGCAAACAGTaGAAACCCACAGCCTATAAA +
Preference number: 2 (lower is better)
Translates to: ERWQESEAENFKASRYKRPVCKQ*KPTAYK
Trigger: TTTATAGGCTGTGGGTTTTCACTGTTTGCAAACAGG...TCTCTTATATCTACTAGCTTTAAAGTTCTCAGCCTCAGACTCCTGCCAGCGTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR-3UTR TCA 90 bp TTAAGATGTCTCTCACCGCTGGGTTGTTTTCTTTATCCAGGTAGATCACATTGGTGCTGTTCTCGAAGCTaGAGAAGAGATAGCTCGATT +
Preference number: 2 (lower is better)
Translates to: LRCLSPLGCFLYPGRSHWCCSRS*RRDSSI
Trigger: AATCGAGCTATCTCTTCTTCAGCTTCGAGAACAGCA...CCAATGTGATCTACCTGGATAAAGAAAACAACCCAGCGGTGAGAGACATCTTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR GCA 90 bp TGGGAACTCTTAATCGGAACCAGTATTCTACTGTGCCAAAATTTGGGATGTCTCTGCACTTTCATCTGCTaGTCCTTTAACTTCCACTGC +
Preference number: 2 (lower is better)
Translates to: WELLIGTSILLCQNLGCLCTFIC*SFNFHC
Trigger: GCAGTGGAAGTTAAAGGAGCAGCAGATGAAAGTGCA...GAGACATCCCAAATTTTGGCACAGTAGAATACTGGTTCCGATTAAGAGTTCCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR GCA 90 bp GATGTCGTCTTCTTTCCCTTGTTGCATTTCCCCCACATTTTCTTCTACCTTAGCTTCTTTATCACCAGATaGCCGAAGGACTTCAGAAGA +
Preference number: 2 (lower is better)
Translates to: DVVFFPLLHFPHIFFYLSFFITR*PKDFRR
Trigger: TCTTCTGAAGTCCTTCGGGCATCTGGTGATAAAGAA...GCTAAGGTAGAAGAAAATGTGGGGGAAATGCAACAAGGGAAAGAAGACGACATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR GCA 90 bp GAGATGTCGTCTTCTTTCCCTTGTTGCATTTCCCCCACATTTTCTTCTACCTTACCTCTGGTTCTTCTCTaGAAACGAACTTTCCAAGGT +
Preference number: 2 (lower is better)
Translates to: EMSSSFPCCISPTFSSTLPLVLL*KRTFQG
Trigger: ACCTTGGAAAGTTCGTTTGCAGAGAAGAACCAGAGG...TAAGGTAGAAGAAAATGTGGGGGAAATGCAACAAGGGAAAGAAGACGACATCTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR CCA 90 bp TGGGAACTCTTAATCGGAACCAGTATTCTACTGTGCCAAAATTTGGGATGTCTCTGCTTTCTGAGGGTCTaGATATCCAGATACATCCCA +
Preference number: 2 (lower is better)
Translates to: WELLIGTSILLCQNLGCLCFLRV*ISRYIP
Trigger: TGGGATGTATCTGGATATCCAGACCCTCAGAAAGCA...GAGACATCCCAAATTTTGGCACAGTAGAATACTGGTTCCGATTAAGAGTTCCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR CCA 90 bp TTAAGATGTCTCTCACCGCTGGGTTGTTTTCTTTATCCAGGTAGATCACATTGGTCTCTGAACAGCCTCTaGTTCTTCTCTGCAAACGAA +
Preference number: 2 (lower is better)
Translates to: LRCLSPLGCFLYPGRSHWSLNSL*FFSANE
Trigger: TTCGTTTGCAGAGAAGAACCAGAGGCTGTTCAGAGA...CCAATGTGATCTACCTGGATAAAGAAAACAACCCAGCGGTGAGAGACATCTTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR CAA 90 bp TCTTTATCACCAGATGCCCGAAGGACTTCAGAAGAAAAGGTGACTTaGTTGATGTGGATTTCAAAGAGATTTTCTCCTCGTTCTAGGTGG +
Preference number: 2 (lower is better)
Translates to: SLSPDARRTSEEKVT*LMWISKRFSPRSRW
Trigger: CCACCTAGAACGAGGAGAAAATCTCTTTGAAATCCACATCAACAAAGTCACCTTTTCTTCTGAAGTCCTTCGGGCATCTGGTGATAAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR CAA 90 bp GCATGCTTTTCCTTATCCATCAACTCAAATATTCCTGAGATACACTaGTCATGTGCCAGGGAAATCAGAGGCACATTGACTTTTCCCATG +
Preference number: 2 (lower is better)
Translates to: ACFSLSINSNIPEIH*SCAREIRGTLTFPM
Trigger: CATGGGAAAAGTCAATGTGCCTCTGATTTCCCTGGCACATGACAAGTGTATCTCAGGAATATTTGAGTTGATGGATAAGGAAAAGCATGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR CAA 90 bp CCGGCACTCAATGAAGAGTCGCTGAATAGTATCCTCCCTGGTTATTaGAGAATCATTAAGGTTCAGAGCTATGATCTCAATCCGAATTTC +
Preference number: 2 (lower is better)
Translates to: PALNEESLNSILPGY*RIIKVQSYDLNPNF
Trigger: GAAATTCGGATTGAGATCATAGCTCTGAACCTTAATGATTCTCAAATAACCAGGGAGGATACTATTCAGCGACTCTTCATTGAGTGCCGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR TCA 90 bp ATATCCTTTAACTGGGCTTCAAGCTTTTGGATGCGTGCAGCCCTGATATCGAGATTACACACATCAGAGTaGTTACTCAAAATCTCATCC +
Preference number: 2 (lower is better)
Translates to: ISFNWASSFWMRAALISRLHTSE*LLKISS
Trigger: GGATGAGATTTTGAGTAATCACTCTGATGTGTGTAA...TCTCGATATCAGGGCTGCACGCATCCAAAAGCTTGAAGCCCAGTTAAAGGATAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR TCA 90 bp GAACGCTGGCAGGAGTCTGAGGCTGAGAACTTTAAAGCTAGTAGATATAAGAGAATTCCTTTGCAGCACTaGTTCACAGCTCCATTAAAA +
Preference number: 2 (lower is better)
Translates to: ERWQESEAENFKASRYKRIPLQH*FTAPLK
Trigger: TTTTAATGGAGCTGTGAATCAGTGCTGCAAAGGAAT...TCTCTTATATCTACTAGCTTTAAAGTTCTCAGCCTCAGACTCCTGCCAGCGTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR-3UTR TCA 90 bp GAGATGTCGTCTTCTTTCCCTTGTTGCATTTCCCCCACATTTTCTTCTACCTTACCTGTTTGCAAACAGTaGAAACCCACAGCCTATAAA +
Preference number: 2 (lower is better)
Translates to: EMSSSFPCCISPTFSSTLPVCKQ*KPTAYK
Trigger: TTTATAGGCTGTGGGTTTTCACTGTTTGCAAACAGG...TAAGGTAGAAGAAAATGTGGGGGAAATGCAACAAGGGAAAGAAGACGACATCTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR TCA 90 bp AAATTAATATCGTACGGATGTCATTTCAAAGCCTCCCAAGGAGGAGTCATCACCTGCTTTTCCCCCTGTTaGACTGTAATGAATTGTCTC +
Preference number: 2 (lower is better)
Translates to: KLISYGCHFKASQGGVITCFSPC*TVMNCL
Trigger: GAGACAATTCATTACAGTTCAACAGGGGGAAAAGCA...GGTGATGACTCCTCCTTGGGAGGCTTTGAAATGACATCCGTACGATATTAATTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR-3UTR TCA 90 bp GAGATGTCGTCTTCTTTCCCTTGTTGCATTTCCCCCACATTTTCTTCTACCTTAGCAAAAATAAGTCATTaGCGTGGACCAGATACTGAG +
Preference number: 2 (lower is better)
Translates to: EMSSSFPCCISPTFSSTLAKISH*RGPDTE
Trigger: CTCAGTATCTGGTCCACGTCAATGACTTATTTTTGC...TAAGGTAGAAGAAAATGTGGGGGAAATGCAACAAGGGAAAGAAGACGACATCTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR GCA 90 bp AAGTCTCGGGACTCGGGTGTGATATGGTATCTGCAAAAGAGACCTTTTTGTCCAGCAAATGCAAATAGATaGTTCATGCTATCATGTTGC +
Preference number: 2 (lower is better)
Translates to: KSRDSGVIWYLQKRPFCPANANR*FMLSCC
Trigger: GCAACATGATAGCATGAAGCATCTATTTGCATTTGC...TGGACAAAAAGGTCTCTTTTGCAGATACCATATCACACCCGAGTCCCGAGACTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR TCA 90 bp TTCTGTGGTCAGATCATACTCTACTGGTCCCACAGAGTGCGCCAACAAATTAATGGTTCAGCTATACGCTaGTATTCATACTTGCATTTT +
Preference number: 2 (lower is better)
Translates to: FCGQIILYWSHRVRQQINGSAIR*YSYLHF
Trigger: AAAATGCAAGTATGAATATCAGCGTATAGCTGAACC...ATTAATTTGTTGGCGCACTCTGTGGGACCAGTAGAGTATGATCTGACCACAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR-3UTR TCA 90 bp GATGTCGTCTTCTTTCCCTTGTTGCATTTCCCCCACATTTTCTTCTACCTTAGCTTTTCCTTCTATGACTaGAAGAGCATTGCTTTTCTC +
Preference number: 2 (lower is better)
Translates to: DVVFFPLLHFPHIFFYLSFSFYD*KSIAFL
Trigger: GAGAAAAGCAATGCTCTTTCAGTCATAGAAGGAAAA...GCTAAGGTAGAAGAAAATGTGGGGGAAATGCAACAAGGGAAAGAAGACGACATC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR TCA 90 bp AAACAAAATAGGACTGGGAGTAACTTAATAAGTTGGTGCCAAGTCTCCTTCTTTAAGGCAGTTTCGAGCTaGGCAATCTGCACTTTCATC +
Preference number: 2 (lower is better)
Translates to: KQNRTGSNLISWCQVSFFKAVSS*AICTFI
Trigger: GATGAAAGTGCAGATTGCTCAGCTCGAAACTGCCTT...AAAGAAGGAGACTTGGCACCAACTTATTAAGTTACTCCCAGTCCTATTTTGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR GCA 90 bp GAGATGTCGTCTTCTTTCCCTTGTTGCATTTCCCCCACATTTTCTTCTACCTTAATAGTTCCTGCAGCATaGTTTTCCTTATCCATCAAC +
Preference number: 2 (lower is better)
Translates to: EMSSSFPCCISPTFSSTLIVPAA*FSLSIN
Trigger: GTTGATGGATAAGGAAAAGCATGCTGCAGGAACTAT...TAAGGTAGAAGAAAATGTGGGGGAAATGCAACAAGGGAAAGAAGACGACATCTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR CCA 90 bp GATGTCGTCTTCTTTCCCTTGTTGCATTTCCCCCACATTTTCTTCTACCTTAGCCTTGAAGCTCTTTCATaGATCGGTCTAGATCTTTAT +
Preference number: 2 (lower is better)
Translates to: DVVFFPLLHFPHIFFYLSLEALS*IGLDLY
Trigger: ATAAAGATCTAGACCGATCCATGAAAGAGCTTCAAG...GCTAAGGTAGAAGAAAATGTGGGGGAAATGCAACAAGGGAAAGAAGACGACATC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR CCA 90 bp TGGGAACTCTTAATCGGAACCAGTATTCTACTGTGCCAAAATTTGGGATGTCTCGCAATATCCTTTAACTaGGCTTCAAGCTTTTGGATG +
Preference number: 2 (lower is better)
Translates to: WELLIGTSILLCQNLGCLAISFN*ASSFWM
Trigger: CATCCAAAAGCTTGAAGCCCAGTTAAAGGATATTGC...GAGACATCCCAAATTTTGGCACAGTAGAATACTGGTTCCGATTAAGAGTTCCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR CCA 90 bp GAGATGTCGTCTTCTTTCCCTTGTTGCATTTCCCCCACATTTTCTTCTACCTTATCTCCTCGTTCTAGGTaGATGGTTTCATCAAATTCA +
Preference number: 2 (lower is better)
Translates to: EMSSSFPCCISPTFSSTLSPRSR*MVSSNS
Trigger: TGAATTTGATGAAACCATCCACCTAGAACGAGGAGA...TAAGGTAGAAGAAAATGTGGGGGAAATGCAACAAGGGAAAGAAGACGACATCTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR TCA 90 bp GAGATGTCGTCTTCTTTCCCTTGTTGCATTTCCCCCACATTTTCTTCTACCTTACATTTTACTGTAACATaGAGTTCATTCAAGTTGCCG +
Preference number: 2 (lower is better)
Translates to: EMSSSFPCCISPTFSSTLHFTVT*SSFKLP
Trigger: CGGCAACTTGAATGAACTTCATGTTACAGTAAAATG...TAAGGTAGAAGAAAATGTGGGGGAAATGCAACAAGGGAAAGAAGACGACATCTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR TCA 90 bp TTATTTTTGTCAACTGCTTCTCATGACAGTGGCTGGGAATTTGACATTTCTACTGCATCAAAAATGCACTaGTACCACATAACCTGGAAC +
Preference number: 2 (lower is better)
Translates to: LFLSTASHDSGWEFDISTASKMH*YHITWN
Trigger: GTTCCAGGTTATGTGGTATCAGTGCATTTTTGATGC...AGTAGAAATGTCAAATTCCCAGCCACTGTCATGAGAAGCAGTTGACAAAAATAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR-3UTR CCA 90 bp AAATTAATATCGTACGGATGTCATTTCAAAGCCTCCCAAGGAGGAGTCATCACCAGTAACTTAATAAGTTaGTGCCAAGTCTCCTTCTTT +
Preference number: 2 (lower is better)
Translates to: KLISYGCHFKASQGGVITSNLIS*CQVSFF
Trigger: AAAGAAGGAGACTTGGCACCAACTTATTAAGTTACT...GGTGATGACTCCTCCTTGGGAGGCTTTGAAATGACATCCGTACGATATTAATTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR-3UTR TCA 90 bp AATATTATGGGTCTTAATGACACTGTAGCTGCACAAAGCCAAAGAAAGCTAGAATTACACACATCAGAGTaGTTACTCAAAATCTCATCC +
Preference number: 2 (lower is better)
Translates to: NIMGLNDTVAAQSQRKLELHTSE*LLKISS
Trigger: GGATGAGATTTTGAGTAATCACTCTGATGTGTGTAA...TTCTAGCTTTCTTTGGCTTTGTGCAGCTACAGTGTCATTAAGACCCATAATATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR-3UTR GCA 90 bp TTATTTTTGTCAACTGCTTCTCATGACAGTGGCTGGGAATTTGACATTTCTACTGCAAATGCAAATAGATaGTTCATGCTATCATGTTGC +
Preference number: 2 (lower is better)
Translates to: LFLSTASHDSGWEFDISTANANR*FMLSCC
Trigger: GCAACATGATAGCATGAAGCATCTATTTGCATTTGC...AGTAGAAATGTCAAATTCCCAGCCACTGTCATGAGAAGCAGTTGACAAAAATAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR-3UTR CAA 90 bp CTGCTCGTCCTCGGGAGGATCACTGACCACGGTGAAGCGCACACTTCTGTGAGGGCCACACCGCTTTCCTaGGAAGGATACGCAACAGCT +
Preference number: 3 (lower is better)
Translates to: LLVLGRITDHGEAHTSVRATPLS*EGYATA
Trigger: AGCTGTTGCGTATCCTTCCAAGGAAAGCGGTGTGGC...CCTCACAGAAGTGTGCGCTTCACCGTGGTCAGTGATCCTCCCGAGGACGAGCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR CCA 72 bp GCTGCAAGTTCTCCTCCAGGGCTGTGTCTGTGTGAGTaGAACCCCCACTTCCCAGCCATCCTCTACAGAGCA +
Preference number: 3 (lower is better)
Translates to: AASSPPGLCLCE*NPHFPAILYRA
Trigger: TGCTCTGTAGAGGATGGCTGGGAAGTGGGGGTTCCACTCACACAGACACAGCCCTGGAGGAGAACTTGCAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR GCA 72 bp ACATGGGCAACCCCAATGTCCTCACATTCTAGGTCCTaGTCGTCCTCGGGAGGATCACTGACCACGGTGAAG +
Preference number: 3 (lower is better)
Translates to: TWATPMSSHSRS*SSSGGSLTTVK
Trigger: CTTCACCGTGGTCAGTGATCCTCCCGAGGACGAGCAGGACCTAGAATGTGAGGACATTGGGGTTGCCCATGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR CAA 90 bp CCACTTAGGAGCACTGAAGTCCTATGGGGTGGCAGTCATGGGGAGGATTGGATATGTCCACTCTGGGGTTaGGGCAGGGACATAGGAGTC +
Preference number: 3 (lower is better)
Translates to: PLRSTEVLWGGSHGEDWICPLWG*GRDIGV
Trigger: GACTCCTATGTCCCTGCCCAAACCCCAGAGTGGACA...TATCCAATCCTCCCCATGACTGCCACCCCATAGGACTTCAGTGCTCCTAAGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR GCA 72 bp CGCTCCTCTACTCTCCTTTCTGAAAACCTCACCGAGTaGAGCTGCTTCTCAAGGCTGCAGCACTTCAGACGC +
Preference number: 3 (lower is better)
Translates to: RSSTLLSENLTE*SCFSRLQHFRR
Trigger: GCGTCTGAAGTGCTGCAGCCTTGAGAAGCAGCTGCACTCGGTGAGGTTTTCAGAAAGGAGAGTAGAGGAGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR GCA 72 bp GTAGGGCATGAAGTGCTTCCACAGTCACCTTCAGTTTaGCGATGGTGCCACCGTCTGTTCGGGCATCGAGAA +
Preference number: 3 (lower is better)
Translates to: VGHEVLPQSPSV*RWCHRLFGHRE
Trigger: TTCTCGATGCCCGAACAGACGGTGGCACCATCGGCAAACTGAAGGTGACTGTGGAAGCACTTCATGCCCTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR TCA 72 bp ATGTCACTCTCCTGGTTGAAGAACTTCAGGCGGCTCTaGAGCTCATGCAGCCGCTGCTTTTGCTGCAGACAC +
Preference number: 3 (lower is better)
Translates to: MSLSWLKNFRRL*SSCSRCFCCRH
Trigger: GTGTCTGCAGCAAAAGCAGCGGCTGCATGAGCTTCAGAGCCGCCTGAAGTTCTTCAACCAGGAGAGTGACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR GCA 72 bp TCTACTCTCCTTTCTGAAAACCTCACCGAGTGCAGCTaGTTCTCAAGGCTGCAGCACTTCAGACGCTGCTCC +
Preference number: 3 (lower is better)
Translates to: STLLSENLTECS*FSRLQHFRRCS
Trigger: GGAGCAGCGTCTGAAGTGCTGCAGCCTTGAGAAGCAGCTGCACTCGGTGAGGTTTTCAGAAAGGAGAGTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR TCA 72 bp GGAGGATCACTGACCACGGTGAAGCGCACACTTCTGTaGGGCAGTTCTCGCCTTTGCAGTATGGCTTTTAAG +
Preference number: 3 (lower is better)
Translates to: GGSLTTVKRTLL*GSSRLCSMAFK
Trigger: CTTAAAAGCCATACTGCAAAGGCGAGAACTGCCTCACAGAAGTGTGCGCTTCACCGTGGTCAGTGATCCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR CCA 72 bp CATGAAGTGCTTCCACAGTCACCTTCAGTTTGCCGATaGTGCCACCGTCTGTTCGGGCATCGAGAACATCAA +
Preference number: 3 (lower is better)
Translates to: HEVLPQSPSVCR*CHRLFGHREHQ
Trigger: TTGATGTTCTCGATGCCCGAACAGACGGTGGCACCATCGGCAAACTGAAGGTGACTGTGGAAGCACTTCATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR CAA 90 bp CTCCGGGTAAAGGCCTCGCACTATGGGAGTAGTCTGCAGTTCAAAGTCATAGAACTGGGCTTCAAGCTTTaGGATGCGTGCAGCCCTGAT +
Preference number: 3 (lower is better)
Translates to: LRVKASHYGSSLQFKVIELGFKL*DACSPD
Trigger: ATCAGGGCTGCACGCATCCAAAAGCTTGAAGCCCAG...TTCTATGACTTTGAACTGCAGACTACTCCCATAGTGCGAGGCCTTTACCCGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR CAA 90 bp AAGTCTCGGGACTCGGGTGTGATATGGTATCTGCAAAAGAGACCTTTTTGTCCAATCTGTGCTGTGGGCTaGGTGGAGCTCCAGCGTGAC +
Preference number: 3 (lower is better)
Translates to: KSRDSGVIWYLQKRPFCPICAVG*VELQRD
Trigger: GTCACGCTGGAGCTCCACCAAGCCCACAGCACAGAT...TGGACAAAAAGGTCTCTTTTGCAGATACCATATCACACCCGAGTCCCGAGACTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR CAA 90 bp CCACTTAGGAGCACTGAAGTCCTATGGGGTGGCAGTCATGGGGAGGATTGGATAACATTTTCCCTCTCCTaGTCTGGCAGCATCCTAATG +
Preference number: 3 (lower is better)
Translates to: PLRSTEVLWGGSHGEDWITFSLS*SGSILM
Trigger: CATTAGGATGCTGCCAGACAAGGAGAGGGAAAATGT...TATCCAATCCTCCCCATGACTGCCACCCCATAGGACTTCAGTGCTCCTAAGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR TCA 72 bp TACAGCTCTAGAGTGCTGAGTGTACTGTGCAGTTACTaGGAGCTGCAAGTTCTCCTCCAGGGCTGTGTCTGT +
Preference number: 3 (lower is better)
Translates to: YSSRVLSVLCSY*ELQVLLQGCVC
Trigger: ACAGACACAGCCCTGGAGGAGAACTTGCAGCTCTCAGTAACTGCACAGTACACTCAGCACTCTAGAGCTGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR TCA 72 bp GGGAACATTGGTGCACGCAGAGTCTCCCAAATCACATaGCCACGTCTCAGCCCACACTTCTTCATGACACAT +
Preference number: 3 (lower is better)
Translates to: GNIGARRVSQIT*PRLSPHFFMTH
Trigger: ATGTGTCATGAAGAAGTGTGGGCTGAGACGTGGTCATGTGATTTGGGAGACTCTGCGTGCACCAATGTTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR TCA 72 bp CGGGACTGGAGGCCGGTGCAGCATTTTACTGTAACATaGAGTTCATTCAAGTTGCCGTCTGTGGACTCTGCT +
Preference number: 3 (lower is better)
Translates to: RDWRPVQHFTVT*SSFKLPSVDSA
Trigger: AGCAGAGTCCACAGACGGCAACTTGAATGAACTTCATGTTACAGTAAAATGCTGCACCGGCCTCCAGTCCCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR CCA 72 bp CATCGGCACTGGGAAACACATGTGGTCATCAAACTGTaGGTCATTGCTACTGGGAACGATGGCGGTATCATG +
Preference number: 3 (lower is better)
Translates to: HRHWETHVVIKL*VIATGNDGGIM
Trigger: CATGATACCGCCATCGTTCCCAGTAGCAATGACCCACAGTTTGATGACCACATGTGTTTCCCAGTGCCGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR GCA 72 bp CTGGGAAACACATGTGGTCATCAAACTGTGGGTCATTaGTACTGGGAACGATGGCGGTATCATGGTCTGGAA +
Preference number: 3 (lower is better)
Translates to: LGNTCGHQTVGH*YWERWRYHGLE
Trigger: TTCCAGACCATGATACCGCCATCGTTCCCAGTAGCAATGACCCACAGTTTGATGACCACATGTGTTTCCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR GCA 72 bp CTTGAGCTTTCATGCGAGCATTTTCTTAGAAGCGGATaGCTCTGGAACAGGTTCTTTCAGGCCTCCAAGTCC +
Preference number: 3 (lower is better)
Translates to: LELSCEHFLRSG*LWNRFFQASKS
Trigger: GGACTTGGAGGCCTGAAAGAACCTGTTCCAGAGGCATCCGCTTCTAAGAAAATGCTCGCATGAAAGCTCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR CAA 90 bp GAACCCCCACTTCCCAGCCATCCTCTACAGAGCAAGCCTGGTTCACAGAGGACACAGTCATGGGGAGGATaGGATAGAAAAATAAACAAA +
Preference number: 3 (lower is better)
Translates to: EPPLPSHPLQSKPGSQRTQSWGG*DRKINK
Trigger: TTTGTTTATTTTTCTATCCAATCCTCCCCATGACTG...TGTCCTCTGTGAACCAGGCTTGCTCTGTAGAGGATGGCTGGGAAGTGGGGGTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR CCA 72 bp GTGCCCAGTGGTACAGACAGAATTTATAGAGTTCTGTaGTCAGATCATACTCTACTGGTCCCACAGAGTGCG +
Preference number: 3 (lower is better)
Translates to: VPSGTDRIYRVL*SDHTLLVPQSA
Trigger: CGCACTCTGTGGGACCAGTAGAGTATGATCTGACCACAGAACTCTATAAATTCTGTCTGTACCACTGGGCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR CCA 72 bp GCACACTTCTGTGAGGCAGTTCTCGCCTTTGCAGTATaGCTTTTAAGATGTCTCTCACCGCTGGGTTGTTTT +
Preference number: 3 (lower is better)
Translates to: AHFCEAVLAFAV*LLRCLSPLGCF
Trigger: AAAACAACCCAGCGGTGAGAGACATCTTAAAAGCCATACTGCAAAGGCGAGAACTGCCTCACAGAAGTGTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR CAA 90 bp AAGTCTCGGGACTCGGGTGTGATATGGTATCTGCAAAAGAGACCTTTTTGTCCATGCTCCTTAAGCTGCTaGTTCAGCTCATCTCCATTG +
Preference number: 3 (lower is better)
Translates to: KSRDSGVIWYLQKRPFCPCSLSC*FSSSPL
Trigger: CAATGGAGATGAGCTGAACAAGCAGCTTAAGGAGCA...TGGACAAAAAGGTCTCTTTTGCAGATACCATATCACACCCGAGTCCCGAGACTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR CCA 72 bp CTTTCATGCGAGCATTTTCTTAGAAGCGGATGCCTCTaGAACAGGTTCTTTCAGGCCTCCAAGTCCTTTCTA +
Preference number: 3 (lower is better)
Translates to: LSCEHFLRSGCL*NRFFQASKSFL
Trigger: TAGAAAGGACTTGGAGGCCTGAAAGAACCTGTTCCAGAGGCATCCGCTTCTAAGAAAATGCTCGCATGAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR TCA 72 bp AAAGATGCCAGTGCACTTCAAGTGAGGACACTCACTTaGTCTCTCTCTTCAGAACCCGTTAGTCACCGTTAT +
Preference number: 3 (lower is better)
Translates to: KDASALQVRTLT*SLSSEPVSHRY
Trigger: ATAACGGTGACTAACGGGTTCTGAAGAGAGAGATCAAGTGAGTGTCCTCACTTGAAGTGCACTGGCATCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR TCA 72 bp AAGTGCTCTAACTCTTCTATCTGGCCTCTCTGTGACTaGATAACATTTTCCCTCTCCTTGTCTGGCAGCATC +
Preference number: 3 (lower is better)
Translates to: KCSNSSIWPLCD*ITFSLSLSGSI
Trigger: GATGCTGCCAGACAAGGAGAGGGAAAATGTTATTCAGTCACAGAGAGGCCAGATAGAAGAGTTAGAGCACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR CCA 72 bp AACACATGTGGTCATCAAACTGTGGGTCATTGCTACTaGGAACGATGGCGGTATCATGGTCTGGAAAATCAA +
Preference number: 3 (lower is better)
Translates to: NTCGHQTVGHCY*ERWRYHGLENQ
Trigger: TTGATTTTCCAGACCATGATACCGCCATCGTTCCCAGTAGCAATGACCCACAGTTTGATGACCACATGTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR GCA 72 bp TCTGTGGTCAGATCATACTCTACTGGTCCCACAGAGTaGGCCAACAAATTAATATCGTACGGATGTCATTTC +
Preference number: 3 (lower is better)
Translates to: SVVRSYSTGPTE*ANKLISYGCHF
Trigger: GAAATGACATCCGTACGATATTAATTTGTTGGCGCACTCTGTGGGACCAGTAGAGTATGATCTGACCACAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR CCA 72 bp AAGGAGGAGTCATCACCGAAGCTGTTGGAGCACAGATaGTTCAGCTATACGCTGATATTCATACTTGCATTT +
Preference number: 3 (lower is better)
Translates to: KEESSPKLLEHR*FSYTLIFILAF
Trigger: AAATGCAAGTATGAATATCAGCGTATAGCTGAACCATCTGTGCTCCAACAGCTTCGGTGATGACTCCTCCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR CCA 72 bp AAATATGACACAGCTGACTCACGTGTAGAAGGTCTTTaGATTGTAACTTCCTGTCTCCACTTAACGACGGAC +
Preference number: 3 (lower is better)
Translates to: KYDTADSRVEGL*IVTSCLHLTTD
Trigger: GTCCGTCGTTAAGTGGAGACAGGAAGTTACAATCCAAAGACCTTCTACACGTGAGTCAGCTGTGTCATATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR-3UTR CAA 90 bp TTCTGTGGTCAGATCATACTCTACTGGTCCCACAGAGTGCGCCAACAAATTAATCTGCTTTTCCCCCTGTaGAACTGTAATGAATTGTCT +
Preference number: 3 (lower is better)
Translates to: FCGQIILYWSHRVRQQINLLFPL*NCNELS
Trigger: AGACAATTCATTACAGTTCAACAGGGGGAAAAGCAG...ATTAATTTGTTGGCGCACTCTGTGGGACCAGTAGAGTATGATCTGACCACAGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR-3UTR CAA 90 bp TTATTTTTGTCAACTGCTTCTCATGACAGTGGCTGGGAATTTGACATTTCTACTAGAGCAAGATTCTTCTaGGAGATGGCAGGCCTGAGG +
Preference number: 3 (lower is better)
Translates to: LFLSTASHDSGWEFDISTRARFF*EMAGLR
Trigger: CCTCAGGCCTGCCATCTCCAAGAAGAATCTTGCTCT...AGTAGAAATGTCAAATTCCCAGCCACTGTCATGAGAAGCAGTTGACAAAAATAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR-3UTR CAA 90 bp TTAAGATGTCTCTCACCGCTGGGTTGTTTTCTTTATCCAGGTAGATCACATTGGTTCTGCATGAGTTGCTaGAAGCTCTTTCATGGATCG +
Preference number: 3 (lower is better)
Translates to: LRCLSPLGCFLYPGRSHWFCMSC*KLFHGS
Trigger: CGATCCATGAAAGAGCTTCAAGCAACTCATGCAGAA...CCAATGTGATCTACCTGGATAAAGAAAACAACCCAGCGGTGAGAGACATCTTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR GCA 72 bp AGAGTGATTACTCAAAATCTCATCCTTGAGCTTTCATaGGAGCATTTTCTTAGAAGCGGATGCCTCTGGAAC +
Preference number: 3 (lower is better)
Translates to: RVITQNLILELS*EHFLRSGCLWN
Trigger: GTTCCAGAGGCATCCGCTTCTAAGAAAATGCTCGCATGAAAGCTCAAGGATGAGATTTTGAGTAATCACTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047783.14
ENSMUST00000139113.8
3UTR TCA 72 bp CGAAGCTGTTGGAGCACAGATGGTTCAGCTATACGCTaGTATTCATACTTGCATTTTTGCATTATAGCTGCT +
Preference number: 3 (lower is better)
Translates to: RSCWSTDGSAIR*YSYLHFCIIAA
Trigger: AGCAGCTATAATGCAAAAATGCAAGTATGAATATCAGCGTATAGCTGAACCATCTGTGCTCCAACAGCTTCG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR TCA 72 bp TATTTCCAAACTAAAAGCATTACAGCTCTAGAGTGCTaGGTGTACTGTGCAGTTACTGAGAGCTGCAAGTTC +
Preference number: 3 (lower is better)
Translates to: YFQTKSITALEC*VYCAVTESCKF
Trigger: GAACTTGCAGCTCTCAGTAACTGCACAGTACACTCAGCACTCTAGAGCTGTAATGCTTTTAGTTTGGAAATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR TCA 72 bp AAGGTTCAGAGCTATGATCTCAATCCGAATTTCTTCTaGTGGCTGTTTGGTATTTGTGGAGACAGAACTTGG +
Preference number: 3 (lower is better)
Translates to: KVQSYDLNPNFF*WLFGICGDRTW
Trigger: CCAAGTTCTGTCTCCACAAATACCAAACAGCCATCAGAAGAAATTCGGATTGAGATCATAGCTCTGAACCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR GCA 72 bp GTAGGTACAGAAAGTGACAAGTTCTTTATCACCAGATaGCCGAAGGACTTCAGAAGAAAAGGTGACTTTGTT +
Preference number: 3 (lower is better)
Translates to: VGTESDKFFITR*PKDFRRKGDFV
Trigger: AACAAAGTCACCTTTTCTTCTGAAGTCCTTCGGGCATCTGGTGATAAAGAACTTGTCACTTTCTGTACCTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR CAA 90 bp TGGGAACTCTTAATCGGAACCAGTATTCTACTGTGCCAAAATTTGGGATGTCTCCAGTCATGGGGAGGATaGGATAGAAAAATAAACAAA +
Preference number: 3 (lower is better)
Translates to: WELLIGTSILLCQNLGCLQSWGG*DRKINK
Trigger: TTTGTTTATTTTTCTATCCAATCCTCCCCATGACTG...GAGACATCCCAAATTTTGGCACAGTAGAATACTGGTTCCGATTAAGAGTTCCCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR CAA 90 bp TGGGAACTCTTAATCGGAACCAGTATTCTACTGTGCCAAAATTTGGGATGTCTCTTAATCGTTTCTACATaGTCCCGAATATTTGACCTC +
Preference number: 3 (lower is better)
Translates to: WELLIGTSILLCQNLGCLLIVST*SRIFDL
Trigger: GAGGTCAAATATTCGGGACAATGTAGAAACGATTAA...GAGACATCCCAAATTTTGGCACAGTAGAATACTGGTTCCGATTAAGAGTTCCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR CAA 90 bp TTAAGATGTCTCTCACCGCTGGGTTGTTTTCTTTATCCAGGTAGATCACATTGGCGGTCTAGATCTTTATaGATTTTGCTGTCCACTTTT +
Preference number: 3 (lower is better)
Translates to: LRCLSPLGCFLYPGRSHWRSRSL*ILLSTF
Trigger: AAAAGTGGACAGCAAAATCAATAAAGATCTAGACCG...CCAATGTGATCTACCTGGATAAAGAAAACAACCCAGCGGTGAGAGACATCTTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR-3UTR CAA 90 bp TTAAGATGTCTCTCACCGCTGGGTTGTTTTCTTTATCCAGGTAGATCACATTGGTGTCTTTTCAAGTTCTaGTACTGTTTCTGCATGAGT +
Preference number: 3 (lower is better)
Translates to: LRCLSPLGCFLYPGRSHWCLFKF*YCFCMS
Trigger: ACTCATGCAGAAACAGTACAAGAACTTGAAAAGACA...CCAATGTGATCTACCTGGATAAAGAAAACAACCCAGCGGTGAGAGACATCTTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR TCA 72 bp ACAACCCTGGATCCAGCATCAGCATCAAAAATGCACTaGTACCACATAACCTGGAACAACTACAATGTTTAT +
Preference number: 3 (lower is better)
Translates to: TTLDPASASKMH*YHITWNNYNVY
Trigger: ATAAACATTGTAGTTGTTCCAGGTTATGTGGTATCAGTGCATTTTTGATGCTGATGCTGGATCCAGGGTTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047783.14
ENSMUST00000139113.8
3UTR CCA 72 bp GAATTTATAGAGTTCTGTGGTCAGATCATACTCTACTaGTCCCACAGAGTGCGCCAACAAATTAATATCGTA +
Preference number: 3 (lower is better)
Translates to: EFIEFCGQIILY*SHRVRQQINIV
Trigger: TACGATATTAATTTGTTGGCGCACTCTGTGGGACCAGTAGAGTATGATCTGACCACAGAACTCTATAAATTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR-3UTR CAA 90 bp TTATTTTTGTCAACTGCTTCTCATGACAGTGGCTGGGAATTTGACATTTCTACTCTCAAAATCTCATCCTaGAGCTTTCATGCGAGCATT +
Preference number: 3 (lower is better)
Translates to: LFLSTASHDSGWEFDISTLKISS*SFHASI
Trigger: AATGCTCGCATGAAAGCTCAAGGATGAGATTTTGAG...AGTAGAAATGTCAAATTCCCAGCCACTGTCATGAGAAGCAGTTGACAAAAATAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR-3UTR CAA 90 bp AAACAAAATAGGACTGGGAGTAACTTAATAAGTTGGTGCCAAGTCTCCTTCTTTCTCAAAATCTCATCCTaGAGCTTTCATGCGAGCATT +
Preference number: 3 (lower is better)
Translates to: KQNRTGSNLISWCQVSFFLKISS*SFHASI
Trigger: AATGCTCGCATGAAAGCTCAAGGATGAGATTTTGAG...AAAGAAGGAGACTTGGCACCAACTTATTAAGTTACTCCCAGTCCTATTTTGTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047783.14
ENSMUST00000139113.8
3UTR TCA 72 bp ATCACTATCATCAAAAACATAGAAACTCAGAGACTCTaGCTTAAGGTAGCGATCCAAATCCATATTCATCGG +
Preference number: 3 (lower is better)
Translates to: ITIIKNIETQRL*LKVAIQIHIHR
Trigger: CCGATGAATATGGATTTGGATCGCTACCTTAAGTCAGAGTCTCTGAGTTTCTATGTTTTTGATGATAGTGAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR TCA 72 bp ACTGAAAGAGCATTGCTTTTCTCCACTAGTTGTTTATaGAGCTTAATCGTTTCTACATTGTCCCGAATATTT +
Preference number: 3 (lower is better)
Translates to: TERALLFSTSCL*SLIVSTLSRIF
Trigger: AAATATTCGGGACAATGTAGAAACGATTAAGCTTCATAAACAACTAGTGGAGAAAAGCAATGCTCTTTCAGT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
CDS-3UTR TCA 90 bp GGGCTGTGTCTGTGTGAGTGGAACCCCCACTTCCCAGCCATCCTCTACAGAGCAGGAAGCCACACTTCCTaGGGCAAGCTGGCCCTCAGA +
Preference number: 4 (lower is better)
Translates to: GLCLCEWNPHFPAILYRAGSHTS*GKLALR
Trigger: TCTGAGGGCCAGCTTGCCTCAGGAAGTGTGGCTTCC...TGCTCTGTAGAGGATGGCTGGGAAGTGGGGGTTCCACTCACACAGACACAGCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR GCA 90 bp CTGCTCGTCCTCGGGAGGATCACTGACCACGGTGAAGCGCACACTTCTGTGAGGTTCCCAGGGCATTCCTaGGAGCCTGCACTGGCACTT +
Preference number: 4 (lower is better)
Translates to: LLVLGRITDHGEAHTSVRFPGHS*EPALAL
Trigger: AAGTGCCAGTGCAGGCTCGCAGGAATGCCCTGGGAA...CCTCACAGAAGTGTGCGCTTCACCGTGGTCAGTGATCCTCCCGAGGACGAGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
CDS-3UTR TCA 90 bp GGGCTGTGTCTGTGTGAGTGGAACCCCCACTTCCCAGCCATCCTCTACAGAGCACCAGTTCTTCACGACTaGCACGTGACACTGCCTGGC +
Preference number: 4 (lower is better)
Translates to: GLCLCEWNPHFPAILYRAPVLHD*HVTLPG
Trigger: GCCAGGCAGTGTCACGTGTCAGTCGTGAAGAACTGG...TGCTCTGTAGAGGATGGCTGGGAAGTGGGGGTTCCACTCACACAGACACAGCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR TCA 90 bp GAACCCCCACTTCCCAGCCATCCTCTACAGAGCAAGCCTGGTTCACAGAGGACATCTGCTGGGCTGATCTaGGCAGTTGTGGCTGCTTGC +
Preference number: 4 (lower is better)
Translates to: EPPLPSHPLQSKPGSQRTSAGLI*AVVAAC
Trigger: GCAAGCAGCCACAACTGCTCAGATCAGCCCAGCAGA...TGTCCTCTGTGAACCAGGCTTGCTCTGTAGAGGATGGCTGGGAAGTGGGGGTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR TCA 90 bp GAACCCCCACTTCCCAGCCATCCTCTACAGAGCAAGCCTGGTTCACAGAGGACATGGACTCTGCTGGGCTaGTCTGAGCAGTTGTGGCTG +
Preference number: 4 (lower is better)
Translates to: EPPLPSHPLQSKPGSQRTWTLLG*SEQLWL
Trigger: CAGCCACAACTGCTCAGATCAGCCCAGCAGAGTCCA...TGTCCTCTGTGAACCAGGCTTGCTCTGTAGAGGATGGCTGGGAAGTGGGGGTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR GCA 90 bp GAACCCCCACTTCCCAGCCATCCTCTACAGAGCAAGCCTGGTTCACAGAGGACACTCACCGAGTGCAGCTaGTTCTCAAGGCTGCAGCAC +
Preference number: 4 (lower is better)
Translates to: EPPLPSHPLQSKPGSQRTLTECS*FSRLQH
Trigger: GTGCTGCAGCCTTGAGAAGCAGCTGCACTCGGTGAG...TGTCCTCTGTGAACCAGGCTTGCTCTGTAGAGGATGGCTGGGAAGTGGGGGTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR TCA 90 bp GAACCCCCACTTCCCAGCCATCCTCTACAGAGCAAGCCTGGTTCACAGAGGACATTCACGACTGACACGTaGCACTGCCTGGCGAGTCTT +
Preference number: 4 (lower is better)
Translates to: EPPLPSHPLQSKPGSQRTFTTDT*HCLASL
Trigger: AAGACTCGCCAGGCAGTGTCACGTGTCAGTCGTGAA...TGTCCTCTGTGAACCAGGCTTGCTCTGTAGAGGATGGCTGGGAAGTGGGGGTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CCA 90 bp GAACCCCCACTTCCCAGCCATCCTCTACAGAGCAAGCCTGGTTCACAGAGGACAACACGTGACACTGCCTaGCGAGTCTTCACTGTGCGT +
Preference number: 4 (lower is better)
Translates to: EPPLPSHPLQSKPGSQRTTRDTA*RVFTVR
Trigger: ACGCACAGTGAAGACTCGCCAGGCAGTGTCACGTGT...TGTCCTCTGTGAACCAGGCTTGCTCTGTAGAGGATGGCTGGGAAGTGGGGGTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR GCA 90 bp CCACTTAGGAGCACTGAAGTCCTATGGGGTGGCAGTCATGGGGAGGATTGGATACGACTGTACGACGTCTaGCTGTGTCCCTGGACTTGG +
Preference number: 4 (lower is better)
Translates to: PLRSTEVLWGGSHGEDWIRLYDV*LCPWTW
Trigger: CCAAGTCCAGGGACACAGGCAGACGTCGTACAGTCG...TATCCAATCCTCCCCATGACTGCCACCCCATAGGACTTCAGTGCTCCTAAGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047783.14
ENSMUST00000139113.8
CDS-3UTR CCA 90 bp ATATCCTTTAACTGGGCTTCAAGCTTTTGGATGCGTGCAGCCCTGATATCGAGACCTGCGAGCCTGCACTaGCACTTGCTCTCCGGCGGC +
Preference number: 4 (lower is better)
Translates to: ISFNWASSFWMRAALISRPASLH*HLLSGG
Trigger: GCCGCCGGAGAGCAAGTGCCAGTGCAGGCTCGCAGG...TCTCGATATCAGGGCTGCACGCATCCAAAAGCTTGAAGCCCAGTTAAAGGATAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
CDS-3UTR TCA 90 bp CCACTTAGGAGCACTGAAGTCCTATGGGGTGGCAGTCATGGGGAGGATTGGATATTCACGACTGACACGTaGCACTGCCTGGCGAGTCTT +
Preference number: 4 (lower is better)
Translates to: PLRSTEVLWGGSHGEDWIFTTDT*HCLASL
Trigger: AAGACTCGCCAGGCAGTGTCACGTGTCAGTCGTGAA...TATCCAATCCTCCCCATGACTGCCACCCCATAGGACTTCAGTGCTCCTAAGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047783.14
ENSMUST00000139113.8
CDS-3UTR CCA 90 bp TTCTGTGGTCAGATCATACTCTACTGGTCCCACAGAGTGCGCCAACAAATTAATCCTGCGAGCCTGCACTaGCACTTGCTCTCCGGCGGC +
Preference number: 4 (lower is better)
Translates to: FCGQIILYWSHRVRQQINPASLH*HLLSGG
Trigger: GCCGCCGGAGAGCAAGTGCCAGTGCAGGCTCGCAGG...ATTAATTTGTTGGCGCACTCTGTGGGACCAGTAGAGTATGATCTGACCACAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR GCA 90 bp ATATCCTTTAACTGGGCTTCAAGCTTTTGGATGCGTGCAGCCCTGATATCGAGACACCGGCAGGTCTCCTaGTGTCTCGTCACTTGGGCC +
Preference number: 4 (lower is better)
Translates to: ISFNWASSFWMRAALISRHRQVS*CLVTWA
Trigger: GGCCCAAGTGACGAGACAGCAGGAGACCTGCCGGTG...TCTCGATATCAGGGCTGCACGCATCCAAAAGCTTGAAGCCCAGTTAAAGGATAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
CDS-3UTR CCA 90 bp GGGCTGTGTCTGTGTGAGTGGAACCCCCACTTCCCAGCCATCCTCTACAGAGCACTTGGAGCTGCTGTTTaGCTGATATCAGCCTGTTTT +
Preference number: 4 (lower is better)
Translates to: GLCLCEWNPHFPAILYRALGAAV*LISACF
Trigger: AAAACAGGCTGATATCAGCCAAACAGCAGCTCCAAG...TGCTCTGTAGAGGATGGCTGGGAAGTGGGGGTTCCACTCACACAGACACAGCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CCA 90 bp GGGCTGTGTCTGTGTGAGTGGAACCCCCACTTCCCAGCCATCCTCTACAGAGCAACTGGGAAACACATGTaGTCATCAAACTGTGGGTCA +
Preference number: 4 (lower is better)
Translates to: GLCLCEWNPHFPAILYRATGKHM*SSNCGS
Trigger: TGACCCACAGTTTGATGACCACATGTGTTTCCCAGT...TGCTCTGTAGAGGATGGCTGGGAAGTGGGGGTTCCACTCACACAGACACAGCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR CAA 72 bp AGGCTGCAGCACTTCAGACGCTGCTCCTTAAGCTGCTaGTTCAGCTCATCTCCATTGGCCATCAAGGCATCA +
Preference number: 4 (lower is better)
Translates to: RLQHFRRCSLSC*FSSSPLAIKAS
Trigger: TGATGCCTTGATGGCCAATGGAGATGAGCTGAACAAGCAGCTTAAGGAGCAGCGTCTGAAGTGCTGCAGCCT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
CDS-3UTR TCA 90 bp CTGCTCGTCCTCGGGAGGATCACTGACCACGGTGAAGCGCACACTTCTGTGAGGGCTTCATCCACATTTTaGAATCTTAGACCTTTCCCA +
Preference number: 4 (lower is better)
Translates to: LLVLGRITDHGEAHTSVRASSTF*NLRPFP
Trigger: TGGGAAAGGTCTAAGATTTCAAAATGTGGATGAAGC...CCTCACAGAAGTGTGCGCTTCACCGTGGTCAGTGATCCTCCCGAGGACGAGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
CDS-3UTR TCA 90 bp CCACTTAGGAGCACTGAAGTCCTATGGGGTGGCAGTCATGGGGAGGATTGGATACTCTACTCTCCTTTCTaGAAACCTCACCGAGTGCAG +
Preference number: 4 (lower is better)
Translates to: PLRSTEVLWGGSHGEDWILYSPF*KPHRVQ
Trigger: CTGCACTCGGTGAGGTTTTCAGAAAGGAGAGTAGAG...TATCCAATCCTCCCCATGACTGCCACCCCATAGGACTTCAGTGCTCCTAAGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR TCA 90 bp GAACCCCCACTTCCCAGCCATCCTCTACAGAGCAAGCCTGGTTCACAGAGGACAAGGATACGCAACAGCTaGCAGACCATTTTCTGGTTT +
Preference number: 4 (lower is better)
Translates to: EPPLPSHPLQSKPGSQRTRIRNS*QTIFWF
Trigger: AAACCAGAAAATGGTCTGTCAGCTGTTGCGTATCCT...TGTCCTCTGTGAACCAGGCTTGCTCTGTAGAGGATGGCTGGGAAGTGGGGGTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR GCA 90 bp TCATACTCTACTGGTCCCACAGAGTGCGCCAACAAATTAATATCGTACGGATGTCACCGGCAGGTCTCCTaGTGTCTCGTCACTTGGGCC +
Preference number: 4 (lower is better)
Translates to: SYSTGPTECANKLISYGCHRQVS*CLVTWA
Trigger: GGCCCAAGTGACGAGACAGCAGGAGACCTGCCGGTG...ACATCCGTACGATATTAATTTGTTGGCGCACTCTGTGGGACCAGTAGAGTATGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR GCA 90 bp GGGCTGTGTCTGTGTGAGTGGAACCCCCACTTCCCAGCCATCCTCTACAGAGCATTCTTTATCACCAGATaGCCGAAGGACTTCAGAAGA +
Preference number: 4 (lower is better)
Translates to: GLCLCEWNPHFPAILYRAFFITR*PKDFRR
Trigger: TCTTCTGAAGTCCTTCGGGCATCTGGTGATAAAGAA...TGCTCTGTAGAGGATGGCTGGGAAGTGGGGGTTCCACTCACACAGACACAGCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CCA 90 bp CCACTTAGGAGCACTGAAGTCCTATGGGGTGGCAGTCATGGGGAGGATTGGATAGTGGGTCATTGCTACTaGGAACGATGGCGGTATCAT +
Preference number: 4 (lower is better)
Translates to: PLRSTEVLWGGSHGEDWIVGHCY*ERWRYH
Trigger: ATGATACCGCCATCGTTCCCAGTAGCAATGACCCAC...TATCCAATCCTCCCCATGACTGCCACCCCATAGGACTTCAGTGCTCCTAAGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR TCA 90 bp CCACTTAGGAGCACTGAAGTCCTATGGGGTGGCAGTCATGGGGAGGATTGGATAGAGCTGCTGTTTGGCTaGTATCAGCCTGTTTTTGAG +
Preference number: 4 (lower is better)
Translates to: PLRSTEVLWGGSHGEDWIELLFG*YQPVFE
Trigger: CTCAAAAACAGGCTGATATCAGCCAAACAGCAGCTC...TATCCAATCCTCCCCATGACTGCCACCCCATAGGACTTCAGTGCTCCTAAGTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000047783.14
ENSMUST00000139113.8
CDS-3UTR TCA 90 bp GAACGCTGGCAGGAGTCTGAGGCTGAGAACTTTAAAGCTAGTAGATATAAGAGAAACTTCAGGCGGCTCTaGAGCTCATGCAGCCGCTGC +
Preference number: 4 (lower is better)
Translates to: ERWQESEAENFKASRYKRNFRRL*SSCSRC
Trigger: GCAGCGGCTGCATGAGCTTCAGAGCCGCCTGAAGTT...TCTCTTATATCTACTAGCTTTAAAGTTCTCAGCCTCAGACTCCTGCCAGCGTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR TCA 90 bp GAACCCCCACTTCCCAGCCATCCTCTACAGAGCAAGCCTGGTTCACAGAGGACAGCAAAAATAAGTCATTaGCGTGGACCAGATACTGAG +
Preference number: 4 (lower is better)
Translates to: EPPLPSHPLQSKPGSQRTAKISH*RGPDTE
Trigger: CTCAGTATCTGGTCCACGTCAATGACTTATTTTTGC...TGTCCTCTGTGAACCAGGCTTGCTCTGTAGAGGATGGCTGGGAAGTGGGGGTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR TCA 90 bp CCACTTAGGAGCACTGAAGTCCTATGGGGTGGCAGTCATGGGGAGGATTGGATATTTGGAGGTAGTCTCTaGACAGCCTCTGGTTCTTCT +
Preference number: 4 (lower is better)
Translates to: PLRSTEVLWGGSHGEDWIFGGSL*TASGSS
Trigger: AGAAGAACCAGAGGCTGTTCAGAGACTACCTCCAAA...TATCCAATCCTCCCCATGACTGCCACCCCATAGGACTTCAGTGCTCCTAAGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR GCA 90 bp GGGCTGTGTCTGTGTGAGTGGAACCCCCACTTCCCAGCCATCCTCTACAGAGCATCATTAATTCTATCCTaGAGCTCCTCTACTCTCCTT +
Preference number: 4 (lower is better)
Translates to: GLCLCEWNPHFPAILYRASLILS*SSSTLL
Trigger: AAGGAGAGTAGAGGAGCTGCAGGATAGAATTAATGA...TGCTCTGTAGAGGATGGCTGGGAAGTGGGGGTTCCACTCACACAGACACAGCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR GCA 90 bp GGGCTGTGTCTGTGTGAGTGGAACCCCCACTTCCCAGCCATCCTCTACAGAGCATGTTTCTGCATGAGTTaGTTGAAGCTCTTTCATGGA +
Preference number: 4 (lower is better)
Translates to: GLCLCEWNPHFPAILYRACFCMS*LKLFHG
Trigger: TCCATGAAAGAGCTTCAAGCAACTCATGCAGAAACA...TGCTCTGTAGAGGATGGCTGGGAAGTGGGGGTTCCACTCACACAGACACAGCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR GCA 90 bp CCACTTAGGAGCACTGAAGTCCTATGGGGTGGCAGTCATGGGGAGGATTGGATAAAGCTTTTGGATGCGTaGAGCCCTGATATCGAGAAG +
Preference number: 4 (lower is better)
Translates to: PLRSTEVLWGGSHGEDWIKLLDA*SPDIEK
Trigger: CTTCTCGATATCAGGGCTGCACGCATCCAAAAGCTT...TATCCAATCCTCCCCATGACTGCCACCCCATAGGACTTCAGTGCTCCTAAGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR TCA 90 bp GGGCTGTGTCTGTGTGAGTGGAACCCCCACTTCCCAGCCATCCTCTACAGAGCAATCAAATTCATCAACTaGGTCATCTGGCATGATTTC +
Preference number: 4 (lower is better)
Translates to: GLCLCEWNPHFPAILYRAIKFIN*VIWHDF
Trigger: GAAATCATGCCAGATGACTCAGTTGATGAATTTGAT...TGCTCTGTAGAGGATGGCTGGGAAGTGGGGGTTCCACTCACACAGACACAGCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR GCA 90 bp TTAAGATGTCTCTCACCGCTGGGTTGTTTTCTTTATCCAGGTAGATCACATTGGGCATTCCTGCGAGCCTaGACTGGCACTTGCTCTCCG +
Preference number: 4 (lower is better)
Translates to: LRCLSPLGCFLYPGRSHWAFLRA*TGTCSP
Trigger: CGGAGAGCAAGTGCCAGTGCAGGCTCGCAGGAATGC...CCAATGTGATCTACCTGGATAAAGAAAACAACCCAGCGGTGAGAGACATCTTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
CDS-3UTR GCA 90 bp GGGCTGTGTCTGTGTGAGTGGAACCCCCACTTCCCAGCCATCCTCTACAGAGCAGGGTTGTACAGTTTCTaGTTCATCCACATTTTGAAA +
Preference number: 4 (lower is better)
Translates to: GLCLCEWNPHFPAILYRAGLYSF*FIHILK
Trigger: TTTCAAAATGTGGATGAAGCAGAAACTGTACAACCC...TGCTCTGTAGAGGATGGCTGGGAAGTGGGGGTTCCACTCACACAGACACAGCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR GCA 90 bp CCACTTAGGAGCACTGAAGTCCTATGGGGTGGCAGTCATGGGGAGGATTGGATATGCACTTTCATCTGCTaGTCCTTTAACTTCCACTGC +
Preference number: 4 (lower is better)
Translates to: PLRSTEVLWGGSHGEDWICTFIC*SFNFHC
Trigger: GCAGTGGAAGTTAAAGGAGCAGCAGATGAAAGTGCA...TATCCAATCCTCCCCATGACTGCCACCCCATAGGACTTCAGTGCTCCTAAGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR GCA 90 bp CCCACAGAGTGCGCCAACAAATTAATATCGTACGGATGTCATTTCAAAGCCTCCTGCAGCCGCTGCTTTTaGTGCAGACACTGCAGCTGT +
Preference number: 4 (lower is better)
Translates to: PTECANKLISYGCHFKASCSRCF*CRHCSC
Trigger: ACAGCTGCAGTGTCTGCAGCAAAAGCAGCGGCTGCA...GGAGGCTTTGAAATGACATCCGTACGATATTAATTTGTTGGCGCACTCTGTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR GCA 90 bp GAACGCTGGCAGGAGTCTGAGGCTGAGAACTTTAAAGCTAGTAGATATAAGAGAGCCGTCTGTGGACTCTaGTGGGCTGATCTGAGCAGT +
Preference number: 4 (lower is better)
Translates to: ERWQESEAENFKASRYKRAVCGL*WADLSS
Trigger: ACTGCTCAGATCAGCCCAGCAGAGTCCACAGACGGC...TCTCTTATATCTACTAGCTTTAAAGTTCTCAGCCTCAGACTCCTGCCAGCGTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR GCA 90 bp GAACCCCCACTTCCCAGCCATCCTCTACAGAGCAAGCCTGGTTCACAGAGGACAATAGTTCCTGCAGCATaGTTTTCCTTATCCATCAAC +
Preference number: 4 (lower is better)
Translates to: EPPLPSHPLQSKPGSQRTIVPAA*FSLSIN
Trigger: GTTGATGGATAAGGAAAAGCATGCTGCAGGAACTAT...TGTCCTCTGTGAACCAGGCTTGCTCTGTAGAGGATGGCTGGGAAGTGGGGGTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CCA 90 bp AAGTCTCGGGACTCGGGTGTGATATGGTATCTGCAAAAGAGACCTTTTTGTCCAGTCTGCCTGTGTCCCTaGACTTGGAGCTGCTGTTTG +
Preference number: 4 (lower is better)
Translates to: KSRDSGVIWYLQKRPFCPVCLCP*TWSCCL
Trigger: CAAACAGCAGCTCCAAGTCCAGGGACACAGGCAGAC...TGGACAAAAAGGTCTCTTTTGCAGATACCATATCACACCCGAGTCCCGAGACTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
CDS-3UTR CCA 90 bp CCCACAGAGTGCGCCAACAAATTAATATCGTACGGATGTCATTTCAAAGCCTCCTTCCACTGCTCTTCATaGGCAGCACTGAAGGCGCTG +
Preference number: 4 (lower is better)
Translates to: PTECANKLISYGCHFKASFHCSS*AALKAL
Trigger: CAGCGCCTTCAGTGCTGCCCATGAAGAGCAGTGGAA...GGAGGCTTTGAAATGACATCCGTACGATATTAATTTGTTGGCGCACTCTGTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR CAA 72 bp TCAAAGCCTCCCAAGGAGGAGTCATCACCGAAGCTGTaGGAGCACAGATGGTTCAGCTATACGCTGATATTC +
Preference number: 4 (lower is better)
Translates to: SKPPKEESSPKL*EHRWFSYTLIF
Trigger: GAATATCAGCGTATAGCTGAACCATCTGTGCTCCAACAGCTTCGGTGATGACTCCTCCTTGGGAGGCTTTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR CAA 72 bp ACACGCTGCAATTGTTTCGTAATCTGTGCTGTGGGCTaGGTGGAGCTCCAGCGTGACAGTGTTCTTCTGAAT +
Preference number: 4 (lower is better)
Translates to: TRCNCFVICAVG*VELQRDSVLLN
Trigger: ATTCAGAAGAACACTGTCACGCTGGAGCTCCACCAAGCCCACAGCACAGATTACGAAACAATTGCAGCGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR CAA 72 bp ACTGGGAAACACATGTGGTCATCAAACTGTGGGTCATaGCTACTGGGAACGATGGCGGTATCATGGTCTGGA +
Preference number: 4 (lower is better)
Translates to: TGKHMWSSNCGS*LLGTMAVSWSG
Trigger: TCCAGACCATGATACCGCCATCGTTCCCAGTAGCAATGACCCACAGTTTGATGACCACATGTGTTTCCCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
CDS-3UTR TCA 90 bp TGGGAACTCTTAATCGGAACCAGTATTCTACTGTGCCAAAATTTGGGATGTCTCCCAGTTCTTCACGACTaGCACGTGACACTGCCTGGC +
Preference number: 4 (lower is better)
Translates to: WELLIGTSILLCQNLGCLPVLHD*HVTLPG
Trigger: GCCAGGCAGTGTCACGTGTCAGTCGTGAAGAACTGG...GAGACATCCCAAATTTTGGCACAGTAGAATACTGGTTCCGATTAAGAGTTCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
CDS-3UTR TCA 90 bp CCCACAGAGTGCGCCAACAAATTAATATCGTACGGATGTCATTTCAAAGCCTCCTGTCACTCTCCTGGTTaGAGAACTTCAGGCGGCTCT +
Preference number: 4 (lower is better)
Translates to: PTECANKLISYGCHFKASCHSPG*RTSGGS
Trigger: AGAGCCGCCTGAAGTTCTTCAACCAGGAGAGTGACA...GGAGGCTTTGAAATGACATCCGTACGATATTAATTTGTTGGCGCACTCTGTGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR GCA 90 bp AAATTAATATCGTACGGATGTCATTTCAAAGCCTCCCAAGGAGGAGTCATCACCTTCCCAGGGCATTCCTaGGAGCCTGCACTGGCACTT +
Preference number: 4 (lower is better)
Translates to: KLISYGCHFKASQGGVITFPGHS*EPALAL
Trigger: AAGTGCCAGTGCAGGCTCGCAGGAATGCCCTGGGAA...GGTGATGACTCCTCCTTGGGAGGCTTTGAAATGACATCCGTACGATATTAATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CCA 90 bp TCATACTCTACTGGTCCCACAGAGTGCGCCAACAAATTAATATCGTACGGATGTACCCACTGTCCACTCTaGGGTTTGGGCAGGGACATA +
Preference number: 4 (lower is better)
Translates to: SYSTGPTECANKLISYGCTHCPL*GLGRDI
Trigger: TATGTCCCTGCCCAAACCCCAGAGTGGACAGTGGGT...ACATCCGTACGATATTAATTTGTTGGCGCACTCTGTGGGACCAGTAGAGTATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CCA 90 bp CCACTTAGGAGCACTGAAGTCCTATGGGGTGGCAGTCATGGGGAGGATTGGATACTCGCCTTTGCAGTATaGCTTTTAAGATGTCTCTCA +
Preference number: 4 (lower is better)
Translates to: PLRSTEVLWGGSHGEDWILAFAV*LLRCLS
Trigger: TGAGAGACATCTTAAAAGCCATACTGCAAAGGCGAG...TATCCAATCCTCCCCATGACTGCCACCCCATAGGACTTCAGTGCTCCTAAGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR GCA 90 bp GATGTCGTCTTCTTTCCCTTGTTGCATTTCCCCCACATTTTCTTCTACCTTAGCCCCTGGACTTGGAGCTaGTGTTTGGCTGATATCAGC +
Preference number: 4 (lower is better)
Translates to: DVVFFPLLHFPHIFFYLSPWTWS*CLADIS
Trigger: GCTGATATCAGCCAAACAGCAGCTCCAAGTCCAGGG...GCTAAGGTAGAAGAAAATGTGGGGGAAATGCAACAAGGGAAAGAAGACGACATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
CDS-3UTR GCA 90 bp CCCACAGAGTGCGCCAACAAATTAATATCGTACGGATGTCATTTCAAAGCCTCCCGCTGCTCCTTAAGCTaGTTGTTCAGCTCATCTCCA +
Preference number: 4 (lower is better)
Translates to: PTECANKLISYGCHFKASRCSLS*LFSSSP
Trigger: TGGAGATGAGCTGAACAAGCAGCTTAAGGAGCAGCG...GGAGGCTTTGAAATGACATCCGTACGATATTAATTTGTTGGCGCACTCTGTGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR GCA 90 bp TCATACTCTACTGGTCCCACAGAGTGCGCCAACAAATTAATATCGTACGGATGTGAAAACCTCACCGAGTaGAGCTGCTTCTCAAGGCTG +
Preference number: 4 (lower is better)
Translates to: SYSTGPTECANKLISYGCENLTE*SCFSRL
Trigger: CAGCCTTGAGAAGCAGCTGCACTCGGTGAGGTTTTC...ACATCCGTACGATATTAATTTGTTGGCGCACTCTGTGGGACCAGTAGAGTATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CCA 90 bp TGGGAACTCTTAATCGGAACCAGTATTCTACTGTGCCAAAATTTGGGATGTCTCACACGTGACACTGCCTaGCGAGTCTTCACTGTGCGT +
Preference number: 4 (lower is better)
Translates to: WELLIGTSILLCQNLGCLTRDTA*RVFTVR
Trigger: ACGCACAGTGAAGACTCGCCAGGCAGTGTCACGTGT...GAGACATCCCAAATTTTGGCACAGTAGAATACTGGTTCCGATTAAGAGTTCCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
CDS-3UTR CCA 90 bp CCCACAGAGTGCGCCAACAAATTAATATCGTACGGATGTCATTTCAAAGCCTCCTGGGCTTCAAGCTTTTaGATGCGTGCAGCCCTGATA +
Preference number: 4 (lower is better)
Translates to: PTECANKLISYGCHFKASWASSF*MRAALI
Trigger: TATCAGGGCTGCACGCATCCAAAAGCTTGAAGCCCA...GGAGGCTTTGAAATGACATCCGTACGATATTAATTTGTTGGCGCACTCTGTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CCA 90 bp CCACTTAGGAGCACTGAAGTCCTATGGGGTGGCAGTCATGGGGAGGATTGGATATGTGGAGACAGAACTTaGAATGATACAGTCATCACT +
Preference number: 4 (lower is better)
Translates to: PLRSTEVLWGGSHGEDWICGDRT*NDTVIT
Trigger: AGTGATGACTGTATCATTCCAAGTTCTGTCTCCACA...TATCCAATCCTCCCCATGACTGCCACCCCATAGGACTTCAGTGCTCCTAAGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR GCA 90 bp AAACAAAATAGGACTGGGAGTAACTTAATAAGTTGGTGCCAAGTCTCCTTCTTTGCATTCCTGCGAGCCTaGACTGGCACTTGCTCTCCG +
Preference number: 4 (lower is better)
Translates to: KQNRTGSNLISWCQVSFFAFLRA*TGTCSP
Trigger: CGGAGAGCAAGTGCCAGTGCAGGCTCGCAGGAATGC...AAAGAAGGAGACTTGGCACCAACTTATTAAGTTACTCCCAGTCCTATTTTGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047783.14
ENSMUST00000139113.8
CDS-3UTR GCA 90 bp CCCACAGAGTGCGCCAACAAATTAATATCGTACGGATGTCATTTCAAAGCCTCCTCCTTTAACTTCCACTaGTCTTCATGGGCAGCACTG +
Preference number: 4 (lower is better)
Translates to: PTECANKLISYGCHFKASSFNFH*SSWAAL
Trigger: CAGTGCTGCCCATGAAGAGCAGTGGAAGTTAAAGGA...GGAGGCTTTGAAATGACATCCGTACGATATTAATTTGTTGGCGCACTCTGTGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR GCA 90 bp CCCACAGAGTGCGCCAACAAATTAATATCGTACGGATGTCATTTCAAAGCCTCCCTTGTATACCACATATaGGTGTGGCTGCAGGTAGCT +
Preference number: 4 (lower is better)
Translates to: PTECANKLISYGCHFKASLVYHI*VWLQVA
Trigger: AGCTACCTGCAGCCACACGCATATGTGGTATACAAG...GGAGGCTTTGAAATGACATCCGTACGATATTAATTTGTTGGCGCACTCTGTGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CCA 90 bp AAATTAATATCGTACGGATGTCATTTCAAAGCCTCCCAAGGAGGAGTCATCACCCTGTGTCCCTGGACTTaGAGCTGCTGTTTGGCTGAT +
Preference number: 4 (lower is better)
Translates to: KLISYGCHFKASQGGVITLCPWT*SCCLAD
Trigger: ATCAGCCAAACAGCAGCTCCAAGTCCAGGGACACAG...GGTGATGACTCCTCCTTGGGAGGCTTTGAAATGACATCCGTACGATATTAATTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR CAA 72 bp TTTATAAGCAGGAGTGCTTCACTGAGGTCATCAGCATaGATGTCACTCTCCTGGTTGAAGAACTTCAGGCGG +
Preference number: 4 (lower is better)
Translates to: FISRSASLRSSA*MSLSWLKNFRR
Trigger: CCGCCTGAAGTTCTTCAACCAGGAGAGTGACATCAATGCTGATGACCTCAGTGAAGCACTCCTGCTTATAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR CAA 72 bp CTAGAATCTCATGGAATCTCAACTGACACGCTGCAATaGTTTCGTAATCTGTGCTGTGGGCTTGGTGGAGCT +
Preference number: 4 (lower is better)
Translates to: LESHGISTDTLQ*FRNLCCGLGGA
Trigger: AGCTCCACCAAGCCCACAGCACAGATTACGAAACAATTGCAGCGTGTCAGTTGAGATTCCATGAGATTCTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR CAA 72 bp CCCACATTTTCTTCTACCTTAGCCACACCGCTTTCCTaGGAAGGATACGCAACAGCTGACAGACCATTTTCT +
Preference number: 4 (lower is better)
Translates to: PTFSSTLATPLS*EGYATADRPFS
Trigger: AGAAAATGGTCTGTCAGCTGTTGCGTATCCTTCCAAGGAAAGCGGTGTGGCTAAGGTAGAAGAAAATGTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
CDS-3UTR TCA 90 bp GAACGCTGGCAGGAGTCTGAGGCTGAGAACTTTAAAGCTAGTAGATATAAGAGAGAGCTGCTGTTTGGCTaGTATCAGCCTGTTTTTGAG +
Preference number: 4 (lower is better)
Translates to: ERWQESEAENFKASRYKRELLFG*YQPVFE
Trigger: CTCAAAAACAGGCTGATATCAGCCAAACAGCAGCTC...TCTCTTATATCTACTAGCTTTAAAGTTCTCAGCCTCAGACTCCTGCCAGCGTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR TCA 90 bp GAACGCTGGCAGGAGTCTGAGGCTGAGAACTTTAAAGCTAGTAGATATAAGAGAAAGGCAGTTTCGAGCTaGGCAATCTGCACTTTCATC +
Preference number: 4 (lower is better)
Translates to: ERWQESEAENFKASRYKRKAVSS*AICTFI
Trigger: GATGAAAGTGCAGATTGCTCAGCTCGAAACTGCCTT...TCTCTTATATCTACTAGCTTTAAAGTTCTCAGCCTCAGACTCCTGCCAGCGTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR TCA 90 bp AAATTAATATCGTACGGATGTCATTTCAAAGCCTCCCAAGGAGGAGTCATCACCGGATGCGTGCAGCCCTaGTATCGAGAAGATGAACAT +
Preference number: 4 (lower is better)
Translates to: KLISYGCHFKASQGGVITGCVQP*YREDEH
Trigger: ATGTTCATCTTCTCGATATCAGGGCTGCACGCATCC...GGTGATGACTCCTCCTTGGGAGGCTTTGAAATGACATCCGTACGATATTAATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR TCA 90 bp CCCACAGAGTGCGCCAACAAATTAATATCGTACGGATGTCATTTCAAAGCCTCCATGTCTCTTCCTTTCTaGAACAGGTCAGCAAGGTCA +
Preference number: 4 (lower is better)
Translates to: PTECANKLISYGCHFKASMSLPF*NRSARS
Trigger: TGACCTTGCTGACCTGTTTCAGAAAGGAAGAGACAT...GGAGGCTTTGAAATGACATCCGTACGATATTAATTTGTTGGCGCACTCTGTGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR GCA 90 bp AAACAAAATAGGACTGGGAGTAACTTAATAAGTTGGTGCCAAGTCTCCTTCTTTCGACTGTACGACGTCTaGCTGTGTCCCTGGACTTGG +
Preference number: 4 (lower is better)
Translates to: KQNRTGSNLISWCQVSFFRLYDV*LCPWTW
Trigger: CCAAGTCCAGGGACACAGGCAGACGTCGTACAGTCG...AAAGAAGGAGACTTGGCACCAACTTATTAAGTTACTCCCAGTCCTATTTTGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047783.14
ENSMUST00000139113.8
CDS-3UTR GCA 90 bp GAACGCTGGCAGGAGTCTGAGGCTGAGAACTTTAAAGCTAGTAGATATAAGAGAGATACACTTGTCATGTaGCAGGGAAATCAGAGGCAC +
Preference number: 4 (lower is better)
Translates to: ERWQESEAENFKASRYKRDTLVM*QGNQRH
Trigger: GTGCCTCTGATTTCCCTGGCACATGACAAGTGTATC...TCTCTTATATCTACTAGCTTTAAAGTTCTCAGCCTCAGACTCCTGCCAGCGTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR GCA 90 bp CCCACAGAGTGCGCCAACAAATTAATATCGTACGGATGTCATTTCAAAGCCTCCCCTCTGGTTCTTCTCTaGAAACGAACTTTCCAAGGT +
Preference number: 4 (lower is better)
Translates to: PTECANKLISYGCHFKASPLVLL*KRTFQG
Trigger: ACCTTGGAAAGTTCGTTTGCAGAGAAGAACCAGAGG...GGAGGCTTTGAAATGACATCCGTACGATATTAATTTGTTGGCGCACTCTGTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CCA 90 bp TTCTGTGGTCAGATCATACTCTACTGGTCCCACAGAGTGCGCCAACAAATTAATGCCATCAAGGCATCATaGCTGATCCTGAGTGTTCTT +
Preference number: 4 (lower is better)
Translates to: FCGQIILYWSHRVRQQINAIKAS*LILSVL
Trigger: AAGAACACTCAGGATCAGCCATGATGCCTTGATGGC...ATTAATTTGTTGGCGCACTCTGTGGGACCAGTAGAGTATGATCTGACCACAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CCA 90 bp TTCTGTGGTCAGATCATACTCTACTGGTCCCACAGAGTGCGCCAACAAATTAATTTGATGTCACTCTCCTaGTTGAAGAACTTCAGGCGG +
Preference number: 4 (lower is better)
Translates to: FCGQIILYWSHRVRQQINLMSLS*LKNFRR
Trigger: CCGCCTGAAGTTCTTCAACCAGGAGAGTGACATCAA...ATTAATTTGTTGGCGCACTCTGTGGGACCAGTAGAGTATGATCTGACCACAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CCA 90 bp TTATTTTTGTCAACTGCTTCTCATGACAGTGGCTGGGAATTTGACATTTCTACTTCTGTGCTGTGGGCTTaGTGGAGCTCCAGCGTGACA +
Preference number: 4 (lower is better)
Translates to: LFLSTASHDSGWEFDISTSVLWA*WSSSVT
Trigger: TGTCACGCTGGAGCTCCACCAAGCCCACAGCACAGA...AGTAGAAATGTCAAATTCCCAGCCACTGTCATGAGAAGCAGTTGACAAAAATAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CCA 90 bp AAATTAATATCGTACGGATGTCATTTCAAAGCCTCCCAAGGAGGAGTCATCACCTGCTACTGGGAACGATaGCGGTATCATGGTCTGGAA +
Preference number: 4 (lower is better)
Translates to: KLISYGCHFKASQGGVITCYWER*RYHGLE
Trigger: TTCCAGACCATGATACCGCCATCGTTCCCAGTAGCA...GGTGATGACTCCTCCTTGGGAGGCTTTGAAATGACATCCGTACGATATTAATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR GCA 90 bp CCCACAGAGTGCGCCAACAAATTAATATCGTACGGATGTCATTTCAAAGCCTCCATCTGCACTTTCATCTaGTGCTCCTTTAACTTCCAC +
Preference number: 4 (lower is better)
Translates to: PTECANKLISYGCHFKASICTFI*CSFNFH
Trigger: GTGGAAGTTAAAGGAGCAGCAGATGAAAGTGCAGAT...GGAGGCTTTGAAATGACATCCGTACGATATTAATTTGTTGGCGCACTCTGTGGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR GCA 90 bp AATATTATGGGTCTTAATGACACTGTAGCTGCACAAAGCCAAAGAAAGCTAGAAAGCTCATGCAGCCGCTaGTTTTGCTGCAGACACTGC +
Preference number: 4 (lower is better)
Translates to: NIMGLNDTVAAQSQRKLESSCSR*FCCRHC
Trigger: GCAGTGTCTGCAGCAAAAGCAGCGGCTGCATGAGCT...TTCTAGCTTTCTTTGGCTTTGTGCAGCTACAGTGTCATTAAGACCCATAATATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CCA 90 bp GATGTCGTCTTCTTTCCCTTGTTGCATTTCCCCCACATTTTCTTCTACCTTAGCCTTGGAGCTGCTGTTTaGCTGATATCAGCCTGTTTT +
Preference number: 4 (lower is better)
Translates to: DVVFFPLLHFPHIFFYLSLGAAV*LISACF
Trigger: AAAACAGGCTGATATCAGCCAAACAGCAGCTCCAAG...GCTAAGGTAGAAGAAAATGTGGGGGAAATGCAACAAGGGAAAGAAGACGACATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
CDS-3UTR CCA 90 bp AAACAAAATAGGACTGGGAGTAACTTAATAAGTTGGTGCCAAGTCTCCTTCTTTGTCTGCCTGTGTCCCTaGACTTGGAGCTGCTGTTTG +
Preference number: 4 (lower is better)
Translates to: KQNRTGSNLISWCQVSFFVCLCP*TWSCCL
Trigger: CAAACAGCAGCTCCAAGTCCAGGGACACAGGCAGAC...AAAGAAGGAGACTTGGCACCAACTTATTAAGTTACTCCCAGTCCTATTTTGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047783.14
ENSMUST00000139113.8
CDS-3UTR CCA 90 bp GAACGCTGGCAGGAGTCTGAGGCTGAGAACTTTAAAGCTAGTAGATATAAGAGAGATGTCTCTCACCGCTaGGTTGTTTTCTTTATCCAG +
Preference number: 4 (lower is better)
Translates to: ERWQESEAENFKASRYKRDVSHR*VVFFIQ
Trigger: CTGGATAAAGAAAACAACCCAGCGGTGAGAGACATC...TCTCTTATATCTACTAGCTTTAAAGTTCTCAGCCTCAGACTCCTGCCAGCGTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR TCA 90 bp TTCTGTGGTCAGATCATACTCTACTGGTCCCACAGAGTGCGCCAACAAATTAATTGTCTTTCAAGCTCATaGACTTTTTCTTGCAGCTGC +
Preference number: 4 (lower is better)
Translates to: FCGQIILYWSHRVRQQINCLSSS*TFSCSC
Trigger: GCAGCTGCAAGAAAAAGTTCATGAGCTTGAAAGACA...ATTAATTTGTTGGCGCACTCTGTGGGACCAGTAGAGTATGATCTGACCACAGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR TCA 90 bp TCATACTCTACTGGTCCCACAGAGTGCGCCAACAAATTAATATCGTACGGATGTTCTTTTCTCTTCAACTaGGTTTTCAGGATCTCTGCC +
Preference number: 4 (lower is better)
Translates to: SYSTGPTECANKLISYGCSFLFN*VFRISA
Trigger: GGCAGAGATCCTGAAAACTCAGTTGAAGAGAAAAGA...ACATCCGTACGATATTAATTTGTTGGCGCACTCTGTGGGACCAGTAGAGTATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR TCA 90 bp AAACAAAATAGGACTGGGAGTAACTTAATAAGTTGGTGCCAAGTCTCCTTCTTTGGTGGAGCTCCAGCGTaGCAGTGTTCTTCTGAATGT +
Preference number: 4 (lower is better)
Translates to: KQNRTGSNLISWCQVSFFGGAPA*QCSSEC
Trigger: ACATTCAGAAGAACACTGTCACGCTGGAGCTCCACC...AAAGAAGGAGACTTGGCACCAACTTATTAAGTTACTCCCAGTCCTATTTTGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR TCA 90 bp TCATACTCTACTGGTCCCACAGAGTGCGCCAACAAATTAATATCGTACGGATGTGTCTTCAGTAGTTATTaGTCCACTTGGTGGAAGGTA +
Preference number: 4 (lower is better)
Translates to: SYSTGPTECANKLISYGCVFSSY*STWWKV
Trigger: TACCTTCCACCAAGTGGATCAATAACTACTGAAGAC...ACATCCGTACGATATTAATTTGTTGGCGCACTCTGTGGGACCAGTAGAGTATGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR GCA 90 bp TTATTTTTGTCAACTGCTTCTCATGACAGTGGCTGGGAATTTGACATTTCTACTCCCTGGACTTGGAGCTaGTGTTTGGCTGATATCAGC +
Preference number: 4 (lower is better)
Translates to: LFLSTASHDSGWEFDISTPWTWS*CLADIS
Trigger: GCTGATATCAGCCAAACAGCAGCTCCAAGTCCAGGG...AGTAGAAATGTCAAATTCCCAGCCACTGTCATGAGAAGCAGTTGACAAAAATAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR GCA 90 bp CCCACAGAGTGCGCCAACAAATTAATATCGTACGGATGTCATTTCAAAGCCTCCTTCTTGTACTGTTTCTaGATGAGTTGCTTGAAGCTC +
Preference number: 4 (lower is better)
Translates to: PTECANKLISYGCHFKASFLYCF*MSCLKL
Trigger: GAGCTTCAAGCAACTCATGCAGAAACAGTACAAGAA...GGAGGCTTTGAAATGACATCCGTACGATATTAATTTGTTGGCGCACTCTGTGGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CCA 90 bp AAATTAATATCGTACGGATGTCATTTCAAAGCCTCCCAAGGAGGAGTCATCACCTCTCTGAACAGCCTCTaGTTCTTCTCTGCAAACGAA +
Preference number: 4 (lower is better)
Translates to: KLISYGCHFKASQGGVITSLNSL*FFSANE
Trigger: TTCGTTTGCAGAGAAGAACCAGAGGCTGTTCAGAGA...GGTGATGACTCCTCCTTGGGAGGCTTTGAAATGACATCCGTACGATATTAATTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CCA 90 bp AAATTAATATCGTACGGATGTCATTTCAAAGCCTCCCAAGGAGGAGTCATCACCGACTCGGGTGTGATATaGTATCTGCAAAAGAGACCT +
Preference number: 4 (lower is better)
Translates to: KLISYGCHFKASQGGVITDSGVI*YLQKRP
Trigger: AGGTCTCTTTTGCAGATACCATATCACACCCGAGTC...GGTGATGACTCCTCCTTGGGAGGCTTTGAAATGACATCCGTACGATATTAATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CCA 90 bp GAACGCTGGCAGGAGTCTGAGGCTGAGAACTTTAAAGCTAGTAGATATAAGAGACTTCTGATGGCTGTTTaGTATTTGTGGAGACAGAAC +
Preference number: 4 (lower is better)
Translates to: ERWQESEAENFKASRYKRLLMAV*YLWRQN
Trigger: GTTCTGTCTCCACAAATACCAAACAGCCATCAGAAG...TCTCTTATATCTACTAGCTTTAAAGTTCTCAGCCTCAGACTCCTGCCAGCGTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR TCA 90 bp TTCTGTGGTCAGATCATACTCTACTGGTCCCACAGAGTGCGCCAACAAATTAATGCTTCATCCACATTTTaGAATCTTAGACCTTTCCCA +
Preference number: 4 (lower is better)
Translates to: FCGQIILYWSHRVRQQINASSTF*NLRPFP
Trigger: TGGGAAAGGTCTAAGATTTCAAAATGTGGATGAAGC...ATTAATTTGTTGGCGCACTCTGTGGGACCAGTAGAGTATGATCTGACCACAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CCA 90 bp TCATACTCTACTGGTCCCACAGAGTGCGCCAACAAATTAATATCGTACGGATGTTCTCCTCGTTCTAGGTaGATGGTTTCATCAAATTCA +
Preference number: 4 (lower is better)
Translates to: SYSTGPTECANKLISYGCSPRSR*MVSSNS
Trigger: TGAATTTGATGAAACCATCCACCTAGAACGAGGAGA...ACATCCGTACGATATTAATTTGTTGGCGCACTCTGTGGGACCAGTAGAGTATGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR CAA 72 bp TCCTTATCCATCAACTCAAATATTCCTGAGATACACTaGTCATGTGCCAGGGAAATCAGAGGCACATTGACT +
Preference number: 4 (lower is better)
Translates to: SLSINSNIPEIH*SCAREIRGTLT
Trigger: AGTCAATGTGCCTCTGATTTCCCTGGCACATGACAAGTGTATCTCAGGAATATTTGAGTTGATGGATAAGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR CAA 72 bp AAGGATACGCAACAGCTGACAGACCATTTTCTGGTTTaGGTCCCACTTCTGGAGAACTGTCTTTTATATCTT +
Preference number: 4 (lower is better)
Translates to: KDTQQLTDHFLV*VPLLENCLLYL
Trigger: AAGATATAAAAGACAGTTCTCCAGAAGTGGGACCAAAACCAGAAAATGGTCTGTCAGCTGTTGCGTATCCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
CDS-3UTR TCA 90 bp TCATACTCTACTGGTCCCACAGAGTGCGCCAACAAATTAATATCGTACGGATGTGTGACAGTGTTCTTCTaGATGTACTGCAAAAATAAG +
Preference number: 4 (lower is better)
Translates to: SYSTGPTECANKLISYGCVTVFF*MYCKNK
Trigger: CTTATTTTTGCAGTACATTCAGAAGAACACTGTCAC...ACATCCGTACGATATTAATTTGTTGGCGCACTCTGTGGGACCAGTAGAGTATGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR TCA 90 bp AATATTATGGGTCTTAATGACACTGTAGCTGCACAAAGCCAAAGAAAGCTAGAAGTTGTGGCTGCTTGCTaGCTCGACAATTGCATTTTC +
Preference number: 4 (lower is better)
Translates to: NIMGLNDTVAAQSQRKLEVVAAC*LDNCIF
Trigger: GAAAATGCAATTGTCGAGTCAGCAAGCAGCCACAAC...TTCTAGCTTTCTTTGGCTTTGTGCAGCTACAGTGTCATTAAGACCCATAATATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR TCA 90 bp GAACGCTGGCAGGAGTCTGAGGCTGAGAACTTTAAAGCTAGTAGATATAAGAGACATTTTACTGTAACATaGAGTTCATTCAAGTTGCCG +
Preference number: 4 (lower is better)
Translates to: ERWQESEAENFKASRYKRHFTVT*SSFKLP
Trigger: CGGCAACTTGAATGAACTTCATGTTACAGTAAAATG...TCTCTTATATCTACTAGCTTTAAAGTTCTCAGCCTCAGACTCCTGCCAGCGTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR TCA 90 bp TCATACTCTACTGGTCCCACAGAGTGCGCCAACAAATTAATATCGTACGGATGTAATCCGAATTTCTTCTaGTGGCTGTTTGGTATTTGT +
Preference number: 4 (lower is better)
Translates to: SYSTGPTECANKLISYGCNPNFF*WLFGIC
Trigger: ACAAATACCAAACAGCCATCAGAAGAAATTCGGATT...ACATCCGTACGATATTAATTTGTTGGCGCACTCTGTGGGACCAGTAGAGTATGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR GCA 90 bp GAGATGTCGTCTTCTTTCCCTTGTTGCATTTCCCCCACATTTTCTTCTACCTTATCTTGCTTGCGGGCATaGTGTTTAAGTAAAATGTTC +
Preference number: 4 (lower is better)
Translates to: EMSSSFPCCISPTFSSTLSCLRA*CLSKMF
Trigger: GAACATTTTACTTAAACAGCATGCCCGCAAGCAAGA...TAAGGTAGAAGAAAATGTGGGGGAAATGCAACAAGGGAAAGAAGACGACATCTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
CDS-3UTR GCA 90 bp GATGTCGTCTTCTTTCCCTTGTTGCATTTCCCCCACATTTTCTTCTACCTTAGCGGGTTGTACAGTTTCTaGTTCATCCACATTTTGAAA +
Preference number: 4 (lower is better)
Translates to: DVVFFPLLHFPHIFFYLSGLYSF*FIHILK
Trigger: TTTCAAAATGTGGATGAAGCAGAAACTGTACAACCC...GCTAAGGTAGAAGAAAATGTGGGGGAAATGCAACAAGGGAAAGAAGACGACATC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
CDS-3UTR CCA 90 bp GAACGCTGGCAGGAGTCTGAGGCTGAGAACTTTAAAGCTAGTAGATATAAGAGACTTGAAGCTCTTTCATaGATCGGTCTAGATCTTTAT +
Preference number: 4 (lower is better)
Translates to: ERWQESEAENFKASRYKRLEALS*IGLDLY
Trigger: ATAAAGATCTAGACCGATCCATGAAAGAGCTTCAAG...TCTCTTATATCTACTAGCTTTAAAGTTCTCAGCCTCAGACTCCTGCCAGCGTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CCA 90 bp AAACAAAATAGGACTGGGAGTAACTTAATAAGTTGGTGCCAAGTCTCCTTCTTTGTGGTCATCAAACTGTaGGTCATTGCTACTGGGAAC +
Preference number: 4 (lower is better)
Translates to: KQNRTGSNLISWCQVSFFVVIKL*VIATGN
Trigger: GTTCCCAGTAGCAATGACCCACAGTTTGATGACCAC...AAAGAAGGAGACTTGGCACCAACTTATTAAGTTACTCCCAGTCCTATTTTGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CCA 90 bp TTCTGTGGTCAGATCATACTCTACTGGTCCCACAGAGTGCGCCAACAAATTAATCATTTCAATATAACTTaGATAGTTCCTGCAGCATGC +
Preference number: 4 (lower is better)
Translates to: FCGQIILYWSHRVRQQINHFNIT*IVPAAC
Trigger: GCATGCTGCAGGAACTATCCAAGTTATATTGAAATG...ATTAATTTGTTGGCGCACTCTGTGGGACCAGTAGAGTATGATCTGACCACAGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CCA 90 bp TCATACTCTACTGGTCCCACAGAGTGCGCCAACAAATTAATATCGTACGGATGTTTTTGGTCCCACTTCTaGAGAACTGTCTTTTATATC +
Preference number: 4 (lower is better)
Translates to: SYSTGPTECANKLISYGCFWSHF*RTVFYI
Trigger: GATATAAAAGACAGTTCTCCAGAAGTGGGACCAAAA...ACATCCGTACGATATTAATTTGTTGGCGCACTCTGTGGGACCAGTAGAGTATGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR TCA 90 bp TTATTTTTGTCAACTGCTTCTCATGACAGTGGCTGGGAATTTGACATTTCTACTTGCTGTTCTCGAAGCTaGAGAAGAGATAGCTCGATT +
Preference number: 4 (lower is better)
Translates to: LFLSTASHDSGWEFDISTCCSRS*RRDSSI
Trigger: AATCGAGCTATCTCTTCTTCAGCTTCGAGAACAGCA...AGTAGAAATGTCAAATTCCCAGCCACTGTCATGAGAAGCAGTTGACAAAAATAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR TCA 90 bp AAACAAAATAGGACTGGGAGTAACTTAATAAGTTGGTGCCAAGTCTCCTTCTTTATTGTCCCGAATATTTaGCCTCTGATCTGTAGCCTG +
Preference number: 4 (lower is better)
Translates to: KQNRTGSNLISWCQVSFFIVPNI*PLICSL
Trigger: CAGGCTACAGATCAGAGGTCAAATATTCGGGACAAT...AAAGAAGGAGACTTGGCACCAACTTATTAAGTTACTCCCAGTCCTATTTTGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR TCA 90 bp AATATTATGGGTCTTAATGACACTGTAGCTGCACAAAGCCAAAGAAAGCTAGAAACGTGGACCAGATACTaGGAAGTGAAGTTATACTCC +
Preference number: 4 (lower is better)
Translates to: NIMGLNDTVAAQSQRKLETWTRY*EVKLYS
Trigger: GGAGTATAACTTCACTTCTCAGTATCTGGTCCACGT...TTCTAGCTTTCTTTGGCTTTGTGCAGCTACAGTGTCATTAAGACCCATAATATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR GCA 90 bp AAACAAAATAGGACTGGGAGTAACTTAATAAGTTGGTGCCAAGTCTCCTTCTTTAGGATCTCTGCCAAGTaGTCTAACTCTTCTATCTGG +
Preference number: 4 (lower is better)
Translates to: KQNRTGSNLISWCQVSFFRISAK*SNSSIW
Trigger: CCAGATAGAAGAGTTAGAGCACTTGGCAGAGATCCT...AAAGAAGGAGACTTGGCACCAACTTATTAAGTTACTCCCAGTCCTATTTTGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR GCA 90 bp TTATTTTTGTCAACTGCTTCTCATGACAGTGGCTGGGAATTTGACATTTCTACTGGCAGTTCTCGCCTTTaGAGTATGGCTTTTAAGATG +
Preference number: 4 (lower is better)
Translates to: LFLSTASHDSGWEFDISTGSSRL*SMAFKM
Trigger: CATCTTAAAAGCCATACTGCAAAGGCGAGAACTGCC...AGTAGAAATGTCAAATTCCCAGCCACTGTCATGAGAAGCAGTTGACAAAAATAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CCA 90 bp TTATTTTTGTCAACTGCTTCTCATGACAGTGGCTGGGAATTTGACATTTCTACTCATATTCATCGGCACTaGGAAACACATGTGGTCATC +
Preference number: 4 (lower is better)
Translates to: LFLSTASHDSGWEFDISTHIHRH*ETHVVI
Trigger: GATGACCACATGTGTTTCCCAGTGCCGATGAATATG...AGTAGAAATGTCAAATTCCCAGCCACTGTCATGAGAAGCAGTTGACAAAAATAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR CAA 72 bp GCTATGATCTCAATCCGAATTTCTTCTGATGGCTGTTaGGTATTTGTGGAGACAGAACTTGGAATGATACAG +
Preference number: 4 (lower is better)
Translates to: AMISIRISSDGC*VFVETELGMIQ
Trigger: CTGTATCATTCCAAGTTCTGTCTCCACAAATACCAAACAGCCATCAGAAGAAATTCGGATTGAGATCATAGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
CDS-3UTR CCA 90 bp AATATTATGGGTCTTAATGACACTGTAGCTGCACAAAGCCAAAGAAAGCTAGAAACCATTTTCTGGTTTTaGTCCCACTTCTGGAGAACT +
Preference number: 4 (lower is better)
Translates to: NIMGLNDTVAAQSQRKLETIFWF*SHFWRT
Trigger: AGTTCTCCAGAAGTGGGACCAAAACCAGAAAATGGT...TTCTAGCTTTCTTTGGCTTTGTGCAGCTACAGTGTCATTAAGACCCATAATATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR CAA 72 bp TCTCTTTCAGTCTTTAGTTTGTCAAGGACTTCGGTTTaGTCTGTAAGATCAGATTTTAAGGCAGTTTCGAGC +
Preference number: 4 (lower is better)
Translates to: SLSVFSLSRTSV*SVRSDFKAVSS
Trigger: GCTCGAAACTGCCTTAAAATCTGATCTTACAGACAAAACCGAAGTCCTTGACAAACTAAAGACTGAAAGAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
3UTR CAA 72 bp TGGTGGAAGGTAGGTGAATTTCCATTTCAATATAACTaGGATAGTTCCTGCAGCATGCTTTTCCTTATCCAT +
Preference number: 4 (lower is better)
Translates to: WWKVGEFPFQYN*DSSCSMLFLIH
Trigger: ATGGATAAGGAAAAGCATGCTGCAGGAACTATCCAAGTTATATTGAAATGGAAATTCACCTACCTTCCACCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
CDS-3UTR TCA 90 bp AAACAAAATAGGACTGGGAGTAACTTAATAAGTTGGTGCCAAGTCTCCTTCTTTTATCTGGCCTCTCTGTaGCTGAATAACATTTTCCAA +
Preference number: 4 (lower is better)
Translates to: KQNRTGSNLISWCQVSFFYLASL*LNNIFQ
Trigger: TTGGAAAATGTTATTCAGTCACAGAGAGGCCAGATA...AAAGAAGGAGACTTGGCACCAACTTATTAAGTTACTCCCAGTCCTATTTTGTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR TCA 90 bp AATATTATGGGTCTTAATGACACTGTAGCTGCACAAAGCCAAAGAAAGCTAGAACAACTCAAATATTCCTaGGATACACTTGTCATGTGC +
Preference number: 4 (lower is better)
Translates to: NIMGLNDTVAAQSQRKLEQLKYS*DTLVMC
Trigger: GCACATGACAAGTGTATCTCAGGAATATTTGAGTTG...TTCTAGCTTTCTTTGGCTTTGTGCAGCTACAGTGTCATTAAGACCCATAATATT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR GCA 90 bp TTATTTTTGTCAACTGCTTCTCATGACAGTGGCTGGGAATTTGACATTTCTACTTCTTGCTTGCGGGCATaGTGTTTAAGTAAAATGTTC +
Preference number: 4 (lower is better)
Translates to: LFLSTASHDSGWEFDISTSCLRA*CLSKMF
Trigger: GAACATTTTACTTAAACAGCATGCCCGCAAGCAAGA...AGTAGAAATGTCAAATTCCCAGCCACTGTCATGAGAAGCAGTTGACAAAAATAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR GCA 90 bp TTATTTTTGTCAACTGCTTCTCATGACAGTGGCTGGGAATTTGACATTTCTACTAACTTGGATAGTTCCTaGAGCATGCTTTTCCTTATC +
Preference number: 4 (lower is better)
Translates to: LFLSTASHDSGWEFDISTNLDSS*SMLFLI
Trigger: GATAAGGAAAAGCATGCTGCAGGAACTATCCAAGTT...AGTAGAAATGTCAAATTCCCAGCCACTGTCATGAGAAGCAGTTGACAAAAATAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CCA 90 bp AATATTATGGGTCTTAATGACACTGTAGCTGCACAAAGCCAAAGAAAGCTAGAAGCAATATCCTTTAACTaGGCTTCAAGCTTTTGGATG +
Preference number: 4 (lower is better)
Translates to: NIMGLNDTVAAQSQRKLEAISFN*ASSFWM
Trigger: CATCCAAAAGCTTGAAGCCCAGTTAAAGGATATTGC...TTCTAGCTTTCTTTGGCTTTGTGCAGCTACAGTGTCATTAAGACCCATAATATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CCA 90 bp AATATTATGGGTCTTAATGACACTGTAGCTGCACAAAGCCAAAGAAAGCTAGAATACTGTGCCAAAATTTaGGATGTCTCCTTTAGTTCC +
Preference number: 4 (lower is better)
Translates to: NIMGLNDTVAAQSQRKLEYCAKI*DVSFSS
Trigger: GGAACTAAAGGAGACATCCCAAATTTTGGCACAGTA...TTCTAGCTTTCTTTGGCTTTGTGCAGCTACAGTGTCATTAAGACCCATAATATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
3UTR CAA 72 bp AATGAAGAGTCGCTGAATAGTATCCTCCCTGGTTATTaGAGAATCATTAAGGTTCAGAGCTATGATCTCAAT +
Preference number: 4 (lower is better)
Translates to: NEESLNSILPGY*RIIKVQSYDLN
Trigger: ATTGAGATCATAGCTCTGAACCTTAATGATTCTCAAATAACCAGGGAGGATACTATTCAGCGACTCTTCATT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
CDS-3UTR TCA 90 bp TTATTTTTGTCAACTGCTTCTCATGACAGTGGCTGGGAATTTGACATTTCTACTTTTTCCTTCTATGACTaGAAGAGCATTGCTTTTCTC +
Preference number: 4 (lower is better)
Translates to: LFLSTASHDSGWEFDISTFSFYD*KSIAFL
Trigger: GAGAAAAGCAATGCTCTTTCAGTCATAGAAGGAAAA...AGTAGAAATGTCAAATTCCCAGCCACTGTCATGAGAAGCAGTTGACAAAAATAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR TCA 90 bp AATATTATGGGTCTTAATGACACTGTAGCTGCACAAAGCCAAAGAAAGCTAGAACTGATATCGAGAAGATaGACATATTGTTCCACTTTG +
Preference number: 4 (lower is better)
Translates to: NIMGLNDTVAAQSQRKLELISRR*TYCSTL
Trigger: CAAAGTGGAACAATATGTTCATCTTCTCGATATCAG...TTCTAGCTTTCTTTGGCTTTGTGCAGCTACAGTGTCATTAAGACCCATAATATT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR GCA 90 bp AAACAAAATAGGACTGGGAGTAACTTAATAAGTTGGTGCCAAGTCTCCTTCTTTTTAATTTTATCCTCTTaGTTGCGGGCATGCTGTTTA +
Preference number: 4 (lower is better)
Translates to: KQNRTGSNLISWCQVSFFLILSS*LRACCL
Trigger: TAAACAGCATGCCCGCAAGCAAGAGGATAAAATTAA...AAAGAAGGAGACTTGGCACCAACTTATTAAGTTACTCCCAGTCCTATTTTGTTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000047783.14
ENSMUST00000139113.8
CDS-3UTR GCA 90 bp AATATTATGGGTCTTAATGACACTGTAGCTGCACAAAGCCAAAGAAAGCTAGAAAGAACATCAATATCTTaGTCTATGATGTCTCTTCCT +
Preference number: 4 (lower is better)
Translates to: NIMGLNDTVAAQSQRKLERTSIS*SMMSLP
Trigger: AGGAAGAGACATCATAGAGCAAGATATTGATGTTCT...TTCTAGCTTTCTTTGGCTTTGTGCAGCTACAGTGTCATTAAGACCCATAATATT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CCA 90 bp TTATTTTTGTCAACTGCTTCTCATGACAGTGGCTGGGAATTTGACATTTCTACTTCTGTCTTCATCTTCTaGTTCCAATTCTTCAGTTAT +
Preference number: 4 (lower is better)
Translates to: LFLSTASHDSGWEFDISTSVFIF*FQFFSY
Trigger: ATAACTGAAGAATTGGAACCAGAAGATGAAGACAGA...AGTAGAAATGTCAAATTCCCAGCCACTGTCATGAGAAGCAGTTGACAAAAATAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS GCA 90 bp CGGCGGCCGGTGTTAACTCGAGCCTGCACTCGACTGTACGACGTCTaGCTGTGTCCCTGGACTTGGAGCTGCTGTTTGGCTGATATCAGC +
Preference number: 5 (lower is better)
Translates to: RRPVLTRACTRLYDV*LCPWTWSCCLADIS
Trigger: GCTGATATCAGCCAAACAGCAGCTCCAAGTCCAGGGACACAGGCAGACGTCGTACAGTCGAGTGCAGGCTCGAGTTAACACCGGCCGCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047783.14
ENSMUST00000139113.8
CDS-3UTR CAA 90 bp CCACTTAGGAGCACTGAAGTCCTATGGGGTGGCAGTCATGGGGAGGATTGGATAGCCACACCGCTTTCCTaGGAAGGATACGCAACAGCT +
Preference number: 5 (lower is better)
Translates to: PLRSTEVLWGGSHGEDWIATPLS*EGYATA
Trigger: AGCTGTTGCGTATCCTTCCAAGGAAAGCGGTGTGGC...TATCCAATCCTCCCCATGACTGCCACCCCATAGGACTTCAGTGCTCCTAAGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS CCA 90 bp TTAACTCGAGCCTGCACTCGACTGTACGACGTCTGCCTGTGTCCCTaGACTTGGAGCTGCTGTTTGGCTGATATCAGCCTGTTTTTGAGA +
Preference number: 5 (lower is better)
Translates to: LTRACTRLYDVCLCP*TWSCCLADISLFLR
Trigger: TCTCAAAAACAGGCTGATATCAGCCAAACAGCAGCTCCAAGTCCAGGGACACAGGCAGACGTCGTACAGTCGAGTGCAGGCTCGAGTTAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047783.14
ENSMUST00000139113.8
CDS TCA 90 bp TCTCATCATGCAAACGCAAAAATCTGTCTTCCAGTTCTTCACGACTaGCACGTGACACTGCCTGGCGAGTCTTCACTGTGCGTGCAGTTG +
Preference number: 5 (lower is better)
Translates to: SHHANAKICLPVLHD*HVTLPGESSLCVQL
Trigger: CAACTGCACGCACAGTGAAGACTCGCCAGGCAGTGTCACGTGTCAGTCGTGAAGAACTGGAAGACAGATTTTTGCGTTTGCATGATGAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000047783.14
ENSMUST00000132757.2
ENSMUST00000139113.8
ENSMUST00000209564.2
CDS-3UTR CAA 90 bp GGCGGCTCTGAAGCTCATGCAGCCGCTGCTTTTGCTGCAGACACTGCAGCTGTATCTTCAAGTAAACTATaGCTGTATTTTGTGAGCGTG +
Preference number: 5 (lower is better)
Translates to: GGSEAHAAAAFAADTAAVSSSKL*LYFVSV
Trigger: CACGCTCACAAAATACAGCAATAGTTTACTTGAAGA...TACAGCTGCAGTGTCTGCAGCAAAAGCAGCGGCTGCATGAGCTTCAGAGCCGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
CDS-3UTR CAA 90 bp GGGCTGTGTCTGTGTGAGTGGAACCCCCACTTCCCAGCCATCCTCTACAGAGCACGGTCTAGATCTTTATaGATTTTGCTGTCCACTTTT +
Preference number: 5 (lower is better)
Translates to: GLCLCEWNPHFPAILYRARSRSL*ILLSTF
Trigger: AAAAGTGGACAGCAAAATCAATAAAGATCTAGACCG...TGCTCTGTAGAGGATGGCTGGGAAGTGGGGGTTCCACTCACACAGACACAGCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CAA 90 bp CCACTTAGGAGCACTGAAGTCCTATGGGGTGGCAGTCATGGGGAGGATTGGATACTGTTTCTGCATGAGTaGCTTGAAGCTCTTTCATGG +
Preference number: 5 (lower is better)
Translates to: PLRSTEVLWGGSHGEDWILFLHE*LEALSW
Trigger: CCATGAAAGAGCTTCAAGCAACTCATGCAGAAACAG...TATCCAATCCTCCCCATGACTGCCACCCCATAGGACTTCAGTGCTCCTAAGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CAA 90 bp TTCTGTGGTCAGATCATACTCTACTGGTCCCACAGAGTGCGCCAACAAATTAATTGTCCACTCTGGGGTTaGGGCAGGGACATAGGAGTC +
Preference number: 5 (lower is better)
Translates to: FCGQIILYWSHRVRQQINCPLWG*GRDIGV
Trigger: GACTCCTATGTCCCTGCCCAAACCCCAGAGTGGACA...ATTAATTTGTTGGCGCACTCTGTGGGACCAGTAGAGTATGATCTGACCACAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS GCA 90 bp TGCACTCGACTGTACGACGTCTGCCTGTGTCCCTGGACTTGGAGCTaGTGTTTGGCTGATATCAGCCTGTTTTTGAGAACTTCATTTTGT +
Preference number: 5 (lower is better)
Translates to: CTRLYDVCLCPWTWS*CLADISLFLRTSFC
Trigger: ACAAAATGAAGTTCTCAAAAACAGGCTGATATCAGCCAAACAGCAGCTCCAAGTCCAGGGACACAGGCAGACGTCGTACAGTCGAGTGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047783.14
ENSMUST00000139113.8
CDS CCA 90 bp AAAAATCTGTCTTCCAGTTCTTCACGACTGACACGTGACACTGCCTaGCGAGTCTTCACTGTGCGTGCAGTTGAGGTTTCTTGTAACCCT +
Preference number: 5 (lower is better)
Translates to: KNLSSSSSRLTRDTA*RVFTVRAVEVSCNP
Trigger: AGGGTTACAAGAAACCTCAACTGCACGCACAGTGAAGACTCGCCAGGCAGTGTCACGTGTCAGTCGTGAAGAACTGGAAGACAGATTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000047783.14
ENSMUST00000132757.2
ENSMUST00000139113.8
ENSMUST00000209564.2
CDS-3UTR CAA 90 bp CCACTTAGGAGCACTGAAGTCCTATGGGGTGGCAGTCATGGGGAGGATTGGATAATTTTATCCTCTTGCTaGCGGGCATGCTGTTTAAGT +
Preference number: 5 (lower is better)
Translates to: PLRSTEVLWGGSHGEDWIILSSC*RACCLS
Trigger: ACTTAAACAGCATGCCCGCAAGCAAGAGGATAAAAT...TATCCAATCCTCCCCATGACTGCCACCCCATAGGACTTCAGTGCTCCTAAGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000047783.14
ENSMUST00000139113.8
CDS-3UTR CAA 90 bp TTCTGTGGTCAGATCATACTCTACTGGTCCCACAGAGTGCGCCAACAAATTAATCTGGGCTTCAAGCTTTaGGATGCGTGCAGCCCTGAT +
Preference number: 5 (lower is better)
Translates to: FCGQIILYWSHRVRQQINLGFKL*DACSPD
Trigger: ATCAGGGCTGCACGCATCCAAAAGCTTGAAGCCCAG...ATTAATTTGTTGGCGCACTCTGTGGGACCAGTAGAGTATGATCTGACCACAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS TCA 90 bp GTACGACGTCTGCCTGTGTCCCTGGACTTGGAGCTGCTGTTTGGCTaGTATCAGCCTGTTTTTGAGAACTTCATTTTGTCTTTCAAGCTC +
Preference number: 5 (lower is better)
Translates to: VRRLPVSLDLELLFG*YQPVFENFILSFKL
Trigger: GAGCTTGAAAGACAAAATGAAGTTCTCAAAAACAGGCTGATATCAGCCAAACAGCAGCTCCAAGTCCAGGGACACAGGCAGACGTCGTAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047783.14
ENSMUST00000139113.8
CDS-3UTR CAA 90 bp GAACGCTGGCAGGAGTCTGAGGCTGAGAACTTTAAAGCTAGTAGATATAAGAGATCAAACTGTGGGTCATaGCTACTGGGAACGATGGCG +
Preference number: 5 (lower is better)
Translates to: ERWQESEAENFKASRYKRSNCGS*LLGTMA
Trigger: CGCCATCGTTCCCAGTAGCAATGACCCACAGTTTGA...TCTCTTATATCTACTAGCTTTAAAGTTCTCAGCCTCAGACTCCTGCCAGCGTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CAA 90 bp CTCCGGGTAAAGGCCTCGCACTATGGGAGTAGTCTGCAGTTCAAAGTCATAGAAATTTTATCCTCTTGCTaGCGGGCATGCTGTTTAAGT +
Preference number: 5 (lower is better)
Translates to: LRVKASHYGSSLQFKVIEILSSC*RACCLS
Trigger: ACTTAAACAGCATGCCCGCAAGCAAGAGGATAAAAT...TTCTATGACTTTGAACTGCAGACTACTCCCATAGTGCGAGGCCTTTACCCGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
CDS-3UTR CAA 90 bp AGCTGCTTCTCAAGGCTGCAGCACTTCAGACGCTGCTCCTTAAGCTGCTTGTTCACTAGCCGTATTAACTaGGTGGCCATTCTTTTAATT +
Preference number: 5 (lower is better)
Translates to: SCFSRLQHFRRCSLSCLFTSRIN*VAILLI
Trigger: AATTAAAAGAATGGCCACCAAGTTAATACGGCTAGT...GAACAAGCAGCTTAAGGAGCAGCGTCTGAAGTGCTGCAGCCTTGAGAAGCAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139113.8
CDS-3UTR CAA 90 bp CCACTTAGGAGCACTGAAGTCCTATGGGGTGGCAGTCATGGGGAGGATTGGATATCTTCAAGTAAACTATaGCTGTATTTTGTGAGCGTG +
Preference number: 5 (lower is better)
Translates to: PLRSTEVLWGGSHGEDWISSSKL*LYFVSV
Trigger: CACGCTCACAAAATACAGCAATAGTTTACTTGAAGA...TATCCAATCCTCCCCATGACTGCCACCCCATAGGACTTCAGTGCTCCTAAGTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000047783.14
ENSMUST00000139113.8
CDS-3UTR CAA 90 bp CCACTTAGGAGCACTGAAGTCCTATGGGGTGGCAGTCATGGGGAGGATTGGATATTAATCGTTTCTACATaGTCCCGAATATTTGACCTC +
Preference number: 5 (lower is better)
Translates to: PLRSTEVLWGGSHGEDWILIVST*SRIFDL
Trigger: GAGGTCAAATATTCGGGACAATGTAGAAACGATTAA...TATCCAATCCTCCCCATGACTGCCACCCCATAGGACTTCAGTGCTCCTAAGTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CAA 90 bp GAACGCTGGCAGGAGTCTGAGGCTGAGAACTTTAAAGCTAGTAGATATAAGAGACTGAGGTCATCAGCATaGATGTCACTCTCCTGGTTG +
Preference number: 5 (lower is better)
Translates to: ERWQESEAENFKASRYKRLRSSA*MSLSWL
Trigger: CAACCAGGAGAGTGACATCAATGCTGATGACCTCAG...TCTCTTATATCTACTAGCTTTAAAGTTCTCAGCCTCAGACTCCTGCCAGCGTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CAA 90 bp TTATTTTTGTCAACTGCTTCTCATGACAGTGGCTGGGAATTTGACATTTCTACTATCTGTGCTGTGGGCTaGGTGGAGCTCCAGCGTGAC +
Preference number: 5 (lower is better)
Translates to: LFLSTASHDSGWEFDISTICAVG*VELQRD
Trigger: GTCACGCTGGAGCTCCACCAAGCCCACAGCACAGAT...AGTAGAAATGTCAAATTCCCAGCCACTGTCATGAGAAGCAGTTGACAAAAATAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CAA 90 bp TCATACTCTACTGGTCCCACAGAGTGCGCCAACAAATTAATATCGTACGGATGTTGCTCCTTAAGCTGCTaGTTCAGCTCATCTCCATTG +
Preference number: 5 (lower is better)
Translates to: SYSTGPTECANKLISYGCCSLSC*FSSSPL
Trigger: CAATGGAGATGAGCTGAACAAGCAGCTTAAGGAGCA...ACATCCGTACGATATTAATTTGTTGGCGCACTCTGTGGGACCAGTAGAGTATGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CAA 90 bp GAACGCTGGCAGGAGTCTGAGGCTGAGAACTTTAAAGCTAGTAGATATAAGAGATTCTGCATGAGTTGCTaGAAGCTCTTTCATGGATCG +
Preference number: 5 (lower is better)
Translates to: ERWQESEAENFKASRYKRFCMSC*KLFHGS
Trigger: CGATCCATGAAAGAGCTTCAAGCAACTCATGCAGAA...TCTCTTATATCTACTAGCTTTAAAGTTCTCAGCCTCAGACTCCTGCCAGCGTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CAA 90 bp TCATACTCTACTGGTCCCACAGAGTGCGCCAACAAATTAATATCGTACGGATGTATTCCTGAGATACACTaGTCATGTGCCAGGGAAATC +
Preference number: 5 (lower is better)
Translates to: SYSTGPTECANKLISYGCIPEIH*SCAREI
Trigger: GATTTCCCTGGCACATGACAAGTGTATCTCAGGAAT...ACATCCGTACGATATTAATTTGTTGGCGCACTCTGTGGGACCAGTAGAGTATGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS GCA 90 bp TCCTCTTGCTTGCGGGCATGCTGTTTAAGTAAAATGTTCTCATCATaGAAACGCAAAAATCTGTCTTCCAGTTCTTCACGACTGACACGT +
Preference number: 5 (lower is better)
Translates to: SSCLRACCLSKMFSS*KRKNLSSSSSRLTR
Trigger: ACGTGTCAGTCGTGAAGAACTGGAAGACAGATTTTTGCGTTTGCATGATGAGAACATTTTACTTAAACAGCATGCCCGCAAGCAAGAGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000047783.14
ENSMUST00000132757.2
ENSMUST00000139113.8
ENSMUST00000209564.2
CDS-3UTR CAA 90 bp CCCACAGAGTGCGCCAACAAATTAATATCGTACGGATGTCATTTCAAAGCCTCCCCATTTCAATATAACTaGGATAGTTCCTGCAGCATG +
Preference number: 5 (lower is better)
Translates to: PTECANKLISYGCHFKASPFQYN*DSSCSM
Trigger: CATGCTGCAGGAACTATCCAAGTTATATTGAAATGG...GGAGGCTTTGAAATGACATCCGTACGATATTAATTTGTTGGCGCACTCTGTGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CAA 90 bp CCCACAGAGTGCGCCAACAAATTAATATCGTACGGATGTCATTTCAAAGCCTCCACTAGCCGTATTAACTaGGTGGCCATTCTTTTAATT +
Preference number: 5 (lower is better)
Translates to: PTECANKLISYGCHFKASTSRIN*VAILLI
Trigger: AATTAAAAGAATGGCCACCAAGTTAATACGGCTAGT...GGAGGCTTTGAAATGACATCCGTACGATATTAATTTGTTGGCGCACTCTGTGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CAA 90 bp GAACGCTGGCAGGAGTCTGAGGCTGAGAACTTTAAAGCTAGTAGATATAAGAGAATCCTCCCTGGTTATTaGAGAATCATTAAGGTTCAG +
Preference number: 5 (lower is better)
Translates to: ERWQESEAENFKASRYKRILPGY*RIIKVQ
Trigger: CTGAACCTTAATGATTCTCAAATAACCAGGGAGGAT...TCTCTTATATCTACTAGCTTTAAAGTTCTCAGCCTCAGACTCCTGCCAGCGTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CAA 90 bp GAACGCTGGCAGGAGTCTGAGGCTGAGAACTTTAAAGCTAGTAGATATAAGAGATGTCTTTTCAAGTTCTaGTACTGTTTCTGCATGAGT +
Preference number: 5 (lower is better)
Translates to: ERWQESEAENFKASRYKRCLFKF*YCFCMS
Trigger: ACTCATGCAGAAACAGTACAAGAACTTGAAAAGACA...TCTCTTATATCTACTAGCTTTAAAGTTCTCAGCCTCAGACTCCTGCCAGCGTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CAA 90 bp TCATACTCTACTGGTCCCACAGAGTGCGCCAACAAATTAATATCGTACGGATGTGAAAAGGTGACTTTGTaGATGTGGATTTCAAAGAGA +
Preference number: 5 (lower is better)
Translates to: SYSTGPTECANKLISYGCEKVTL*MWISKR
Trigger: TCTCTTTGAAATCCACATCAACAAAGTCACCTTTTC...ACATCCGTACGATATTAATTTGTTGGCGCACTCTGTGGGACCAGTAGAGTATGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CAA 90 bp TCATACTCTACTGGTCCCACAGAGTGCGCCAACAAATTAATATCGTACGGATGTGAAGAAAAGGTGACTTaGTTGATGTGGATTTCAAAG +
Preference number: 5 (lower is better)
Translates to: SYSTGPTECANKLISYGCEEKVT*LMWISK
Trigger: CTTTGAAATCCACATCAACAAAGTCACCTTTTCTTC...ACATCCGTACGATATTAATTTGTTGGCGCACTCTGTGGGACCAGTAGAGTATGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS-3UTR CAA 90 bp AATATTATGGGTCTTAATGACACTGTAGCTGCACAAAGCCAAAGAAAGCTAGAATCTTCTGATGGCTGTTaGGTATTTGTGGAGACAGAA +
Preference number: 5 (lower is better)
Translates to: NIMGLNDTVAAQSQRKLESSDGC*VFVETE
Trigger: TTCTGTCTCCACAAATACCAAACAGCCATCAGAAGA...TTCTAGCTTTCTTTGGCTTTGTGCAGCTACAGTGTCATTAAGACCCATAATATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS TCA 90 bp TTATTTCTCCTCTGGCTTCTTCAAGTAAACTATTGCTGTATTTTGTaGGCGTGGGTTGTACAGTTTCTGCTTCATCCACATTTTGAAATC +
Preference number: 5 (lower is better)
Translates to: LFLLWLLQVNYCCIL*AWVVQFLLHPHFEI
Trigger: GATTTCAAAATGTGGATGAAGCAGAAACTGTACAACCCACGCTCACAAAATACAGCAATAGTTTACTTGAAGAAGCCAGAGGAGAAATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047783.14
ENSMUST00000139113.8
CDS-3UTR CAA 90 bp TTATTTTTGTCAACTGCTTCTCATGACAGTGGCTGGGAATTTGACATTTCTACTCTCATGAACTTTTTCTaGCAGCTGCTCAATCATTTC +
Preference number: 5 (lower is better)
Translates to: LFLSTASHDSGWEFDISTLMNFF*QLLNHF
Trigger: GAAATGATTGAGCAGCTGCAAGAAAAAGTTCATGAG...AGTAGAAATGTCAAATTCCCAGCCACTGTCATGAGAAGCAGTTGACAAAAATAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS CCA 72 bp GCCTGCACTCGACTGTACGACGTCTGCCTGTGTCCCTaGACTTGGAGCTGCTGTTTGGCTGATATCAGCCTG +
Preference number: 6 (lower is better)
Translates to: ACTRLYDVCLCP*TWSCCLADISL
Trigger: CAGGCTGATATCAGCCAAACAGCAGCTCCAAGTCCAGGGACACAGGCAGACGTCGTACAGTCGAGTGCAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047783.14
ENSMUST00000139113.8
CDS GCA 72 bp AGCTCCTCTACTCTCCTTTCTGAAAACCTCACCGAGTaGAGCTGCTTCTCAAGGCTGCAGCACTTCAGACGC +
Preference number: 6 (lower is better)
Translates to: SSSTLLSENLTE*SCFSRLQHFRR
Trigger: GCGTCTGAAGTGCTGCAGCCTTGAGAAGCAGCTGCACTCGGTGAGGTTTTCAGAAAGGAGAGTAGAGGAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14
CDS TCA 72 bp CAAAAATCTGTCTTCCAGTTCTTCACGACTGACACGTaGCACTGCCTGGCGAGTCTTCACTGTGCGTGCAGT +
Preference number: 6 (lower is better)
Translates to: QKSVFQFFTTDT*HCLASLHCACS
Trigger: ACTGCACGCACAGTGAAGACTCGCCAGGCAGTGTCACGTGTCAGTCGTGAAGAACTGGAAGACAGATTTTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000047783.14
ENSMUST00000132757.2
ENSMUST00000139113.8
ENSMUST00000209564.2
CDS TCA 72 bp GCAAACGCAAAAATCTGTCTTCCAGTTCTTCACGACTaGCACGTGACACTGCCTGGCGAGTCTTCACTGTGC +
Preference number: 6 (lower is better)
Translates to: ANAKICLPVLHD*HVTLPGESSLC
Trigger: GCACAGTGAAGACTCGCCAGGCAGTGTCACGTGTCAGTCGTGAAGAACTGGAAGACAGATTTTTGCGTTTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000047783.14
ENSMUST00000132757.2
ENSMUST00000139113.8
ENSMUST00000209564.2
CDS GCA 72 bp CTGTACGACGTCTGCCTGTGTCCCTGGACTTGGAGCTaGTGTTTGGCTGATATCAGCCTGTTTTTGAGAACT +
Preference number: 6 (lower is better)
Translates to: LYDVCLCPWTWS*CLADISLFLRT
Trigger: AGTTCTCAAAAACAGGCTGATATCAGCCAAACAGCAGCTCCAAGTCCAGGGACACAGGCAGACGTCGTACAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047783.14
ENSMUST00000139113.8
CDS CAA 90 bp CGACTGTACGACGTCTGCCTGTGTCCCTGGACTTGGAGCTGCTGTTaGGCTGATATCAGCCTGTTTTTGAGAACTTCATTTTGTCTTTCA +
Preference number: 6 (lower is better)
Translates to: RLYDVCLCPWTWSCC*ADISLFLRTSFCLS
Trigger: TGAAAGACAAAATGAAGTTCTCAAAAACAGGCTGATATCAGCCAAACAGCAGCTCCAAGTCCAGGGACACAGGCAGACGTCGTACAGTCG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047783.14
ENSMUST00000139113.8
CDS TCA 72 bp CTGCCTGTGTCCCTGGACTTGGAGCTGCTGTTTGGCTaGTATCAGCCTGTTTTTGAGAACTTCATTTTGTCT +
Preference number: 6 (lower is better)
Translates to: LPVSLDLELLFG*YQPVFENFILS
Trigger: AGACAAAATGAAGTTCTCAAAAACAGGCTGATATCAGCCAAACAGCAGCTCCAAGTCCAGGGACACAGGCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047783.14
ENSMUST00000139113.8
CDS TCA 72 bp AGCGTGGGTTGTACAGTTTCTGCTTCATCCACATTTTaGAATCTTAGACCTTTCCCAGGGCATTCCTGCGAG +
Preference number: 6 (lower is better)
Translates to: SVGCTVSASSTF*NLRPFPGHSCE
Trigger: CTCGCAGGAATGCCCTGGGAAAGGTCTAAGATTTCAAAATGTGGATGAAGCAGAAACTGTACAACCCACGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047783.14
ENSMUST00000139113.8
CDS TCA 72 bp ATTAATTCTATCCTGCAGCTCCTCTACTCTCCTTTCTaGAAACCTCACCGAGTGCAGCTGCTTCTCAAGGCT +
Preference number: 6 (lower is better)
Translates to: INSILQLLYSPF*KPHRVQLLLKA
Trigger: AGCCTTGAGAAGCAGCTGCACTCGGTGAGGTTTTCAGAAAGGAGAGTAGAGGAGCTGCAGGATAGAATTAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047783.14