RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RPGRIP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000057132

Ensembl transcript IDs: ENSMUST00000111600.11, ENSMUST00000111603.10, ENSMUST00000180500.8, ENSMUST00000180513.2, ENSMUST00000180646.8, ENSMUST00000181017.8, ENSMUST00000181401.8, ENSMUST00000181627.8, ENSMUST00000181709.2, ENSMUST00000181736.2

Found 505 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TGGGCTGCCTTCCCAGCCGTCGACTCCGGAGGCCGCAGCACCTGGTaGTCTCAACCCGAAGCTCATTCTGAGGCGCCCAGGTTTCGGATC +
Preference number: 1 (lower is better)
Translates to: WAAFPAVDSGGRSTW*SQPEAHSEAPRFRI
Trigger: GATCCGAAACCTGGGCGCCTCAGAATGAGCTTCGGGTTGAGATCACCAGGTGCTGCGGCCTCCGGAGTCGACGGCTGGGAAGGCAGCCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 90 bp CTCCAGCGCAGTGCCCATTTGGTCCAGCAGTGGACAGACTTGCGGTaGGAGCTGCTTCCCTGTGAGCTCCGTGCTCCAGTGAGGCTGATG +
Preference number: 1 (lower is better)
Translates to: LQRSAHLVQQWTDLR*ELLPCELRAPVRLM
Trigger: CATCAGCCTCACTGGAGCACGGAGCTCACAGGGAAGCAGCTCCCACCGCAAGTCTGTCCACTGCTGGACCAAATGGGCACTGCGCTGGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR GCA 90 bp TGGATGCAGCAGAGACATGTCCACTTCATCGTCACCTCTGTGGGCTaGCAGGGGCTCCAGACACAGCGACGGTGGCAGAGTGCCATACGC +
Preference number: 1 (lower is better)
Translates to: WMQQRHVHFIVTSVG*QGLQTQRRWQSAIR
Trigger: GCGTATGGCACTCTGCCACCGTCGCTGTGTCTGGAGCCCCTGGCAGCCCACAGAGGTGACGATGAAGTGGACATGTCTCTGCTGCATCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR GCA 90 bp TGGTCAGGAAAGGTGAAGAAGCGGTACATGACATACGGACTGGGCTaGCTTCCCAGCCGTCGACTCCGGAGGCCGCAGCACCTGGTGATC +
Preference number: 1 (lower is better)
Translates to: WSGKVKKRYMTYGLG*LPSRRLRRPQHLVI
Trigger: GATCACCAGGTGCTGCGGCCTCCGGAGTCGACGGCTGGGAAGGCAGCCCAGTCCGTATGTCATGTACCGCTTCTTCACCTTTCCTGACCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 90 bp ATCGTCACCTCTGTGGGCTGCCAGGGGCTCCAGACACAGCGACGGTaGCAGAGTGCCATACGCGACATCTTTGAGCTGCTCTGGCAAGAC +
Preference number: 1 (lower is better)
Translates to: IVTSVGCQGLQTQRR*QSAIRDIFELLWQD
Trigger: GTCTTGCCAGAGCAGCTCAAAGATGTCGCGTATGGCACTCTGCCACCGTCGCTGTGTCTGGAGCCCCTGGCAGCCCACAGAGGTGACGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 90 bp TCGCTTGGATGCAGCAGAGACATGTCCACTTCATCGTCACCTCTGTaGGCTGCCAGGGGCTCCAGACACAGCGACGGTGGCAGAGTGCCA +
Preference number: 1 (lower is better)
Translates to: SLGCSRDMSTSSSPL*AARGSRHSDGGRVP
Trigger: TGGCACTCTGCCACCGTCGCTGTGTCTGGAGCCCCTGGCAGCCCACAGAGGTGACGATGAAGTGGACATGTCTCTGCTGCATCCAAGCGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR TCA 90 bp CTCCGGAGGCCGCAGCACCTGGTGATCTCAACCCGAAGCTCATTCTaGGGCGCCCAGGTTTCGGATCTGGACTCATTGCTCTGGACCTTC +
Preference number: 1 (lower is better)
Translates to: LRRPQHLVISTRSSF*GAQVSDLDSLLWTF
Trigger: GAAGGTCCAGAGCAATGAGTCCAGATCCGAAACCTGGGCGCCTCAGAATGAGCTTCGGGTTGAGATCACCAGGTGCTGCGGCCTCCGGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR GCA 90 bp CCAGCCTGTGTGAGGGCAGCAGGGGTCAGGAAGGCCTGGTGGACGTaGAGCTCAAAAAGATTCTCGCTTGGATGCAGCAGAGACATGTCC +
Preference number: 1 (lower is better)
Translates to: PACVRAAGVRKAWWT*SSKRFSLGCSRDMS
Trigger: GGACATGTCTCTGCTGCATCCAAGCGAGAATCTTTTTGAGCTGCACGTCCACCAGGCCTTCCTGACCCCTGCTGCCCTCACACAGGCTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 90 bp AAAGACTTTGGTCTCCTCCAGCGCAGTGCCCATTTGGTCCAGCAGTaGACAGACTTGCGGTGGGAGCTGCTTCCCTGTGAGCTCCGTGCT +
Preference number: 1 (lower is better)
Translates to: KDFGLLQRSAHLVQQ*TDLRWELLPCELRA
Trigger: AGCACGGAGCTCACAGGGAAGCAGCTCCCACCGCAAGTCTGTCCACTGCTGGACCAAATGGGCACTGCGCTGGAGGAGACCAAAGTCTTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 90 bp AGGCAGCAAGGGCACCTGGGCTCGGCCAAGATAGGAGCCAGGCTCTaGGTCTTCATCATCAAAAACATAGACAGACAGAGCTTCCCGCCT +
Preference number: 1 (lower is better)
Translates to: RQQGHLGSAKIGARL*VFIIKNIDRQSFPP
Trigger: AGGCGGGAAGCTCTGTCTGTCTATGTTTTTGATGATGAAGACCCAGAGCCTGGCTCCTATCTTGGCCGAGCCCAGGTGCCCTTGCTGCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR GCA 90 bp AGGAAGGCCTGGTGGACGTGCAGCTCAAAAAGATTCTCGCTTGGATaGAGCAGAGACATGTCCACTTCATCGTCACCTCTGTGGGCTGCC +
Preference number: 1 (lower is better)
Translates to: RKAWWTCSSKRFSLG*SRDMSTSSSPLWAA
Trigger: GGCAGCCCACAGAGGTGACGATGAAGTGGACATGTCTCTGCTGCATCCAAGCGAGAATCTTTTTGAGCTGCACGTCCACCAGGCCTTCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 90 bp GGTCAGGAAGGCCTGGTGGACGTGCAGCTCAAAAAGATTCTCGCTTaGATGCAGCAGAGACATGTCCACTTCATCGTCACCTCTGTGGGC +
Preference number: 1 (lower is better)
Translates to: GQEGLVDVQLKKILA*MQQRHVHFIVTSVG
Trigger: GCCCACAGAGGTGACGATGAAGTGGACATGTCTCTGCTGCATCCAAGCGAGAATCTTTTTGAGCTGCACGTCCACCAGGCCTTCCTGACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 90 bp ACAGGTAGGCCTGGGCTTTCTTTCGCTTATTGCATGCCTGGAGGCTaGGTTTTAGGGGCAGGCACAGCCTCATCCAGTACTCTAACACCC +
Preference number: 1 (lower is better)
Translates to: TGRPGLSFAYCMPGG*VLGAGTASSSTLTP
Trigger: GGGTGTTAGAGTACTGGATGAGGCTGTGCCTGCCCCTAAAACCCAGCCTCCAGGCATGCAATAAGCGAAAGAAAGCCCAGGCCTACCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR TCA 90 bp TCTGGACTCATTGCTCTGGACCTTCCGAGCTCCAAGCACACTGACTaGCAGGTAGGCCTGGGCTTTCTTTCGCTTATTGCATGCCTGGAG +
Preference number: 1 (lower is better)
Translates to: SGLIALDLPSSKHTD*QVGLGFLSLIACLE
Trigger: CTCCAGGCATGCAATAAGCGAAAGAAAGCCCAGGCCTACCTGTCAGTCAGTGTGCTTGGAGCTCGGAAGGTCCAGAGCAATGAGTCCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR TCA 90 bp CGGATCTGGACTCATTGCTCTGGACCTTCCGAGCTCCAAGCACACTaGCTGACAGGTAGGCCTGGGCTTTCTTTCGCTTATTGCATGCCT +
Preference number: 1 (lower is better)
Translates to: RIWTHCSGPSELQAH*LTGRPGLSFAYCMP
Trigger: AGGCATGCAATAAGCGAAAGAAAGCCCAGGCCTACCTGTCAGTCAGTGTGCTTGGAGCTCGGAAGGTCCAGAGCAATGAGTCCAGATCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR GCA 90 bp GAAGAGAAGCGGGAAGAAGGCCACACCCACAAGGCTGGGCACTGCTaGTCTTCCCTTTACTTTCTCTGCAGTGTCCTGTGTTGGTTGCTT +
Preference number: 1 (lower is better)
Translates to: EEKREEGHTHKAGHC*SSLYFLCSVLCWLL
Trigger: AAGCAACCAACACAGGACACTGCAGAGAAAGTAAAGGGAAGAGCAGCAGTGCCCAGCCTTGTGGGTGTGGCCTTCTTCCCGCTTCTCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR CCA 90 bp CAAGAACGTCCTTGGGCTCTGCTGATGACTGTGACTTGGCTGAGCTaGGCTGGTGTCTGGTCTTCAGTGGTTCTGGTTTCTTGCCTCATG +
Preference number: 1 (lower is better)
Translates to: QERPWALLMTVTWLS*AGVWSSVVLVSCLM
Trigger: CATGAGGCAAGAAACCAGAACCACTGAAGACCAGACACCAGCCCAGCTCAGCCAAGTCACAGTCATCAGCAGAGCCCAAGGACGTTCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR CCA 90 bp CCGTCCCTTTATCAGTTCCAGATCTGCAGTTCTCAAGAACGTCCTTaGGCTCTGCTGATGACTGTGACTTGGCTGAGCTGGGCTGGTGTC +
Preference number: 1 (lower is better)
Translates to: PSLYQFQICSSQERP*ALLMTVTWLSWAGV
Trigger: GACACCAGCCCAGCTCAGCCAAGTCACAGTCATCAGCAGAGCCCAAGGACGTTCTTGAGAACTGCAGATCTGGAACTGATAAAGGGACGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR CCA 90 bp CCCTCAATGACACTCTTCCAACCACCCGGAAGCACGGCTGCCCTGTaGAAATTCTTCCAGCTGTTTGATGCGGCTGTTCTTGAAGTCCAG +
Preference number: 1 (lower is better)
Translates to: PSMTLFQPPGSTAAL*KFFQLFDAAVLEVQ
Trigger: CTGGACTTCAAGAACAGCCGCATCAAACAGCTGGAAGAATTTCCACAGGGCAGCCGTGCTTCCGGGTGGTTGGAAGAGTGTCATTGAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 90 bp TGCAGTTCTCAAGAACGTCCTTGGGCTCTGCTGATGACTGTGACTTaGCTGAGCTGGGCTGGTGTCTGGTCTTCAGTGGTTCTGGTTTCT +
Preference number: 1 (lower is better)
Translates to: CSSQERPWALLMTVT*LSWAGVWSSVVLVS
Trigger: AGAAACCAGAACCACTGAAGACCAGACACCAGCCCAGCTCAGCCAAGTCACAGTCATCAGCAGAGCCCAAGGACGTTCTTGAGAACTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR CCA 90 bp TGGTGCTCCACAGGGTCCAGATCTATCACCTTGCTAAAGTGGAAGTaGATTTCTTCGCCTGCCCTTGGTTTCCTCAGGGACATCGGAGTC +
Preference number: 1 (lower is better)
Translates to: WCSTGSRSITLLKWK*ISSPALGFLRDIGV
Trigger: GACTCCGATGTCCCTGAGGAAACCAAGGGCAGGCGAAGAAATCCACTTCCACTTTAGCAAGGTGATAGATCTGGACCCTGTGGAGCACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR TCA 90 bp GACATGGTATTCACTAGCCATGGCCTGATGGAGATCAAGCCGTACTaGAGTTCCTTGAAGGTAGTGCAGGAGGAGGTAGTCTGCCTGCAC +
Preference number: 1 (lower is better)
Translates to: DMVFTSHGLMEIKPY*SSLKVVQEEVVCLH
Trigger: GTGCAGGCAGACTACCTCCTCCTGCACTACCTTCAAGGAACTTCAGTACGGCTTGATCTCCATCAGGCCATGGCTAGTGAATACCATGTC
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 90 bp TGGAGGGCAGCAGCTGCTTGGAGGGAAACCTTCAGCCTTCCAATTTaGATGGCCTGGTTTCTAGGGCTCACAATCTCTAGTTCTTGCTCT +
Preference number: 1 (lower is better)
Translates to: WRAAAAWRETFSLPI*MAWFLGLTISSSCS
Trigger: AGAGCAAGAACTAGAGATTGTGAGCCCTAGAAACCAGGCCATCCAAATTGGAAGGCTGAAGGTTTCCCTCCAAGCAGCTGCTGCCCTCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR GCA 90 bp GGCAGAGTGCCATACGCGACATCTTTGAGCTGCTCTGGCAAGACCTaGCGTAGGCTAATACGCACAGATTCACAAAATGACAGAGGAAAG +
Preference number: 1 (lower is better)
Translates to: GRVPYATSLSCSGKT*RRLIRTDSQNDRGK
Trigger: CTTTCCTCTGTCATTTTGTGAATCTGTGCGTATTAGCCTACGGCAGGTCTTGCCAGAGCAGCTCAAAGATGTCGCGTATGGCACTCTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR GCA 90 bp GAGAAGGCTGAAATACACAATGCTTTCAAAACAGGTTCTCCACCATaGCACTGGAAAGAGCTGGAGCCCACAGCACTTCCGCTGTCTGAG +
Preference number: 1 (lower is better)
Translates to: EKAEIHNAFKTGSPP*HWKELEPTALPLSE
Trigger: CTCAGACAGCGGAAGTGCTGTGGGCTCCAGCTCTTTCCAGTGGCATGGTGGAGAACCTGTTTTGAAAGCATTGTGTATTTCAGCCTTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 90 bp ACAATGCTTTCAAAACAGGTTCTCCACCATGCCACTGGAAAGAGCTaGAGCCCACAGCACTTCCGCTGTCTGAGCACTGTTATCTCAGTC +
Preference number: 1 (lower is better)
Translates to: TMLSKQVLHHATGKS*SPQHFRCLSTVISV
Trigger: GACTGAGATAACAGTGCTCAGACAGCGGAAGTGCTGTGGGCTCCAGCTCTTTCCAGTGGCATGGTGGAGAACCTGTTTTGAAAGCATTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 90 bp GCTGAAATACACAATGCTTTCAAAACAGGTTCTCCACCATGCCACTaGAAAGAGCTGGAGCCCACAGCACTTCCGCTGTCTGAGCACTGT +
Preference number: 1 (lower is better)
Translates to: AEIHNAFKTGSPPCH*KELEPTALPLSEHC
Trigger: ACAGTGCTCAGACAGCGGAAGTGCTGTGGGCTCCAGCTCTTTCCAGTGGCATGGTGGAGAACCTGTTTTGAAAGCATTGTGTATTTCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR GCA 90 bp CAGATCTTCAGTCATCTCCTTATAAATGCCATGGAGGGCAGCAGCTaGTTGGAGGGAAACCTTCAGCCTTCCAATTTGGATGGCCTGGTT +
Preference number: 1 (lower is better)
Translates to: QIFSHLLINAMEGSS*LEGNLQPSNLDGLV
Trigger: AACCAGGCCATCCAAATTGGAAGGCTGAAGGTTTCCCTCCAAGCAGCTGCTGCCCTCCATGGCATTTATAAGGAGATGACTGAAGATCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 90 bp TTAGCACCTGGGATAAGTCATTCTCGTCTTGAGCTTTTGGTTCACTaGACTCTCTCTGATCTGTCTGTGGGAGTAGAGTGGGCTGAGCAG +
Preference number: 1 (lower is better)
Translates to: LAPGISHSRLELLVH*TLSDLSVGVEWAEQ
Trigger: CTGCTCAGCCCACTCTACTCCCACAGACAGATCAGAGAGAGTCCAGTGAACCAAAAGCTCAAGACGAGAATGACTTATCCCAGGTGCTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 90 bp AGATACTGGTCCAGGTCAGAGGTCACAAGCACGGGAAACAGAGCCTaGTCTTTAAAGTATGGATTGCTGCTGGCTGGAATGATGATGGTG +
Preference number: 1 (lower is better)
Translates to: RYWSRSEVTSTGNRA*SLKYGLLLAGMMMV
Trigger: CACCATCATCATTCCAGCCAGCAGCAATCCATACTTTAAAGACCAGGCTCTGTTTCCCGTGCTTGTGACCTCTGACCTGGACCAGTATCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 90 bp TCCGATAGAGGCAGATCACAGAATTTGTACTCCACATATACCTGCTaGATAGTCTCATCAGACATGACGTCAGCCTCAGGGCAGAAGGCC +
Preference number: 1 (lower is better)
Translates to: SDRGRSQNLYSTYTC*IVSSDMTSASGQKA
Trigger: GGCCTTCTGCCCTGAGGCTGACGTCATGTCTGATGAGACTATCCAGCAGGTATATGTGGAGTACAAATTCTGTGATCTGCCTCTATCGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR GCA 90 bp TTCAAAGGTTCACTTATTCAGAAGTCATTTCTAGGATGTGAGGGATaGTCCTGTCTCAGTGCTGAACGGGGTGATGGCGGTTCCTCTCTC +
Preference number: 1 (lower is better)
Translates to: FKGSLIQKSFLGCEG*SCLSAERGDGGSSL
Trigger: GAGAGAGGAACCGCCATCACCCCGTTCAGCACTGAGACAGGAGCATCCCTCACATCCTAGAAATGACTTCTGAATAAGTGAACCTTTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR GCA 90 bp GTCTCCGATAGAGGCAGATCACAGAATTTGTACTCCACATATACCTaGTGGATAGTCTCATCAGACATGACGTCAGCCTCAGGGCAGAAG +
Preference number: 1 (lower is better)
Translates to: VSDRGRSQNLYSTYT*WIVSSDMTSASGQK
Trigger: CTTCTGCCCTGAGGCTGACGTCATGTCTGATGAGACTATCCAGCAGGTATATGTGGAGTACAAATTCTGTGATCTGCCTCTATCGGAGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 90 bp CACGGGAAACAGAGCCTGGTCTTTAAAGTATGGATTGCTGCTGGCTaGAATGATGATGGTGTCATGGTCAGGAAAGGTGAAGAAGCGGTA +
Preference number: 1 (lower is better)
Translates to: HGKQSLVFKVWIAAG*NDDGVMVRKGEEAV
Trigger: TACCGCTTCTTCACCTTTCCTGACCATGACACCATCATCATTCCAGCCAGCAGCAATCCATACTTTAAAGACCAGGCTCTGTTTCCCGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 90 bp GTCAGAGGTCACAAGCACGGGAAACAGAGCCTGGTCTTTAAAGTATaGATTGCTGCTGGCTGGAATGATGATGGTGTCATGGTCAGGAAA +
Preference number: 1 (lower is better)
Translates to: VRGHKHGKQSLVFKV*IAAGWNDDGVMVRK
Trigger: TTTCCTGACCATGACACCATCATCATTCCAGCCAGCAGCAATCCATACTTTAAAGACCAGGCTCTGTTTCCCGTGCTTGTGACCTCTGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 90 bp GCAGCTGCTTGGAGGGAAACCTTCAGCCTTCCAATTTGGATGGCCTaGTTTCTAGGGCTCACAATCTCTAGTTCTTGCTCTAGGATATCT +
Preference number: 1 (lower is better)
Translates to: AAAWRETFSLPIWMA*FLGLTISSSCSRIS
Trigger: AGATATCCTAGAGCAAGAACTAGAGATTGTGAGCCCTAGAAACCAGGCCATCCAAATTGGAAGGCTGAAGGTTTCCCTCCAAGCAGCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR GCA 90 bp GTAAAGGATGTCGGTGTCTTGAAACTTCAGCTTTCCATCTTGAGCTaGTTTGTTGGTTGCTTGACGAAAGACTTTGGTCTCCTCCAGCGC +
Preference number: 1 (lower is better)
Translates to: VKDVGVLKLQLSILS*FVGCLTKDFGLLQR
Trigger: GCGCTGGAGGAGACCAAAGTCTTTCGTCAAGCAACCAACAAAGCAGCTCAAGATGGAAAGCTGAAGTTTCAAGACACCGACATCCTTTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 90 bp ATACTGGGAGGTGAAGTCATAGAGAGGCTGGGGCCCAGTAGAGAGTaGGGTGCAGTGAGTTTCAAAATCATAGAAGGAATAAGTGCAGAA +
Preference number: 1 (lower is better)
Translates to: ILGGEVIERLGPSRE*GAVSFKIIEGISAE
Trigger: TTCTGCACTTATTCCTTCTATGATTTTGAAACTCACTGCACCCCACTCTCTACTGGGCCCCAGCCTCTCTATGACTTCACCTCCCAGTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 90 bp TCTTTAAAGTATGGATTGCTGCTGGCTGGAATGATGATGGTGTCATaGTCAGGAAAGGTGAAGAAGCGGTACATGACATACGGACTGGGC +
Preference number: 1 (lower is better)
Translates to: SLKYGLLLAGMMMVS*SGKVKKRYMTYGLG
Trigger: GCCCAGTCCGTATGTCATGTACCGCTTCTTCACCTTTCCTGACCATGACACCATCATCATTCCAGCCAGCAGCAATCCATACTTTAAAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR TCA 90 bp GGATCACTTACCACTGTAAACTTGAAACGTCCCTCATCAGAATCTTaGGCATGTAGCATGGCAAACAAAAACTGCCTTCGGCTTTGGTGC +
Preference number: 1 (lower is better)
Translates to: GSLTTVNLKRPSSES*ACSMANKNCLRLWC
Trigger: GCACCAAAGCCGAAGGCAGTTTTTGTTTGCCATGCTACATGCTCAAGATTCTGATGAGGGACGTTTCAAGTTTACAGTGGTAAGTGATCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CAA 90 bp GGTCTCCTCCAGCGCAGTGCCCATTTGGTCCAGCAGTGGACAGACTaGCGGTGGGAGCTGCTTCCCTGTGAGCTCCGTGCTCCAGTGAGG +
Preference number: 2 (lower is better)
Translates to: GLLQRSAHLVQQWTD*RWELLPCELRAPVR
Trigger: CCTCACTGGAGCACGGAGCTCACAGGGAAGCAGCTCCCACCGCAAGTCTGTCCACTGCTGGACCAAATGGGCACTGCGCTGGAGGAGACC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR CCA 90 bp GACTGTGACTTGGCTGAGCTGGGCTGGTGTCTGGTCTTCAGTGGTTCTGGTTTCCCACACCCACAAGGCTaGGCACTGCTGCTCTTCCCT +
Preference number: 2 (lower is better)
Translates to: DCDLAELGWCLVFSGSGFPHPQG*ALLLFP
Trigger: AGGGAAGAGCAGCAGTGCCCAGCCTTGTGGGTGTGG...GAAACCAGAACCACTGAAGACCAGACACCAGCCCAGCTCAGCCAAGTCACAGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR-3UTR TCA 90 bp AAGGCCTGGTGGACGTGCAGCTCAAAAAGATTCTCGCTTGGATGCAGCAGAGACGGGAGTAGAGTGGGCTaGGCAGCCAGTTCACACAGC +
Preference number: 2 (lower is better)
Translates to: KAWWTCSSKRFSLGCSRDGSRVG*AASSHS
Trigger: GCTGTGTGAACTGGCTGCTCAGCCCACTCTACTCCC...GTCTCTGCTGCATCCAAGCGAGAATCTTTTTGAGCTGCACGTCCACCAGGCCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR CCA 90 bp ACTGTGACTTGGCTGAGCTGGGCTGGTGTCTGGTCTTCAGTGGTTCTGGTTTCTCCACACCCACAAGGCTaGGCACTGCTGCTCTTCCCT +
Preference number: 2 (lower is better)
Translates to: TVTWLSWAGVWSSVVLVSPHPQG*ALLLFP
Trigger: AGGGAAGAGCAGCAGTGCCCAGCCTTGTGGGTGTGG...AGAAACCAGAACCACTGAAGACCAGACACCAGCCCAGCTCAGCCAAGTCACAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR-3UTR CCA 90 bp TGTCTGCACTTCACCAGGGGAGTGACGCTGAGGACGGAGACTCGGAGTCTGAAACTGATGACTGTGACTTaGCTGAGCTGGGCTGGTGTC +
Preference number: 2 (lower is better)
Translates to: CLHFTRGVTLRTETRSLKLMTVT*LSWAGV
Trigger: GACACCAGCCCAGCTCAGCCAAGTCACAGTCATCAG...TTTCAGACTCCGAGTCTCCGTCCTCAGCGTCACTCCCCTGGTGAAGTGCAGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181736.2
3UTR CAA 90 bp GGGTCAGGAAGGCCTGGTGGACGTGCAGCTCAAAAAGATTCTCGCTaGGATGCAGCAGAGACATGTCCACTTCATCGTCACCTCTGTGGG +
Preference number: 2 (lower is better)
Translates to: GSGRPGGRAAQKDSR*DAAETCPLHRHLCG
Trigger: CCCACAGAGGTGACGATGAAGTGGACATGTCTCTGCTGCATCCAAGCGAGAATCTTTTTGAGCTGCACGTCCACCAGGCCTTCCTGACCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR CCA 90 bp TGTCTGCACTTCACCAGGGGAGTGACGCTGAGGACGGAGACTCGGAGTCTGAAAAGCTGGGCTGGTGTCTaGTCTTCAGTGGTTCTGGTT +
Preference number: 2 (lower is better)
Translates to: CLHFTRGVTLRTETRSLKSWAGV*SSVVLV
Trigger: AACCAGAACCACTGAAGACCAGACACCAGCCCAGCT...TTTCAGACTCCGAGTCTCCGTCCTCAGCGTCACTCCCCTGGTGAAGTGCAGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000181736.2
3UTR-3UTR CCA 90 bp CAGCCGCTCCAGTTTCTCTTCGTGGTCCCTGTTTTCCCTGTCAGCTTTTGTCAGTGGACAGACTTGCGGTaGGAGCTGCTTCCCTGTGAG +
Preference number: 2 (lower is better)
Translates to: QPLQFLFVVPVFPVSFCQWTDLR*ELLPCE
Trigger: CTCACAGGGAAGCAGCTCCCACCGCAAGTCTGTCCA...CTGACAAAAGCTGACAGGGAAAACAGGGACCACGAAGAGAAACTGGAGCGGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR CCA 90 bp AGACAGACAGAGCTTCCCGCCTCAGATACTGGTCCAGGTCAGAGGTCACAAGCACGCTTATTGCATGCCTaGAGGCTGGGTTTTAGGGGC +
Preference number: 2 (lower is better)
Translates to: RQTELPASDTGPGQRSQARLLHA*RLGFRG
Trigger: GCCCCTAAAACCCAGCCTCCAGGCATGCAATAAGCG...TGCTTGTGACCTCTGACCTGGACCAGTATCTGAGGCGGGAAGCTCTGTCTGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR CCA 90 bp AGTCAGTCCTCCGTCCGTCCCTTTATCAGTTCCAGATCTGCAGTTCTCAAGAACCCACACCCACAAGGCTaGGCACTGCTGCTCTTCCCT +
Preference number: 2 (lower is better)
Translates to: SQSSVRPFISSRSAVLKNPHPQG*ALLLFP
Trigger: AGGGAAGAGCAGCAGTGCCCAGCCTTGTGGGTGTGG...GTTCTTGAGAACTGCAGATCTGGAACTGATAAAGGGACGGACGGAGGACTGACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR CAA 90 bp TCCGTCCCTTTATCAGTTCCAGATCTGCAGTTCTCAAGAACGTCCTaGGGCTCTGCTGATGACTGTGACTTGGCTGAGCTGGGCTGGTGT +
Preference number: 2 (lower is better)
Translates to: SVPLSVPDLQFSRTS*GSADDCDLAELGWC
Trigger: ACACCAGCCCAGCTCAGCCAAGTCACAGTCATCAGCAGAGCCCAAGGACGTTCTTGAGAACTGCAGATCTGGAACTGATAAAGGGACGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR CAA 90 bp GCGAGTGTGGCCAAGCCGTGGACTCTCTCCACAGTCCCTAGCACCTaGTCAAGTGAGATCCATCCAGTAGCAAGGACATGGTATTCACTA +
Preference number: 2 (lower is better)
Translates to: ASVAKPWTLSTVPST*SSEIHPVARTWYSL
Trigger: TAGTGAATACCATGTCCTTGCTACTGGATGGATCTCACTTGACAAGGTGCTAGGGACTGTGGAGAGAGTCCACGGCTTGGCCACACTCGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR GCA 90 bp AATGATGATGGTGTCATGGTCAGGAAAGGTGAAGAAGCGGTACATGACATACGGGTCACCTCTGTGGGCTaGCAGGGGCTCCAGACACAG +
Preference number: 2 (lower is better)
Translates to: NDDGVMVRKGEEAVHDIRVTSVG*QGLQTQ
Trigger: CTGTGTCTGGAGCCCCTGGCAGCCCACAGAGGTGAC...CCGTATGTCATGTACCGCTTCTTCACCTTTCCTGACCATGACACCATCATCATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR CCA 90 bp CCTCCGTCCGTCCCTTTATCAGTTCCAGATCTGCAGTTCTCAAGAACGTCCTTGGTGACTTGGCTGAGCTaGGCTGGTGTCTGGTCTTCA +
Preference number: 2 (lower is better)
Translates to: PPSVPLSVPDLQFSRTSLVTWLS*AGVWSS
Trigger: TGAAGACCAGACACCAGCCCAGCTCAGCCAAGTCAC...CAAGGACGTTCTTGAGAACTGCAGATCTGGAACTGATAAAGGGACGGACGGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR-3UTR CCA 90 bp CCTCCGTCCGTCCCTTTATCAGTTCCAGATCTGCAGTTCTCAAGAACGTCCTTGCTGATGACTGTGACTTaGCTGAGCTGGGCTGGTGTC +
Preference number: 2 (lower is better)
Translates to: PPSVPLSVPDLQFSRTSLLMTVT*LSWAGV
Trigger: GACACCAGCCCAGCTCAGCCAAGTCACAGTCATCAG...CAAGGACGTTCTTGAGAACTGCAGATCTGGAACTGATAAAGGGACGGACGGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR-3UTR CCA 90 bp GATCTGTCTGTGGGAGTAGAGTGGGCTGAGCAGCCAGTTCACACAGCTCTTCTGGAGATGAGGCTACAGTaGCAGTTGACTGAAGGCTCT +
Preference number: 2 (lower is better)
Translates to: DLSVGVEWAEQPVHTALLEMRLQ*QLTEGS
Trigger: AGAGCCTTCAGTCAACTGCCACTGTAGCCTCATCTC...CAGAAGAGCTGTGTGAACTGGCTGCTCAGCCCACTCTACTCCCACAGACAGATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000180646.8
ENSMUST00000181709.2
3UTR CAA 90 bp AACTGCCTTCGGCTTTGGTGCTCCACAGGGTCCAGATCTATCACCTaGCTAAAGTGGAAGTGGATTTCTTCGCCTGCCCTTGGTTTCCTC +
Preference number: 2 (lower is better)
Translates to: NCLRLWCSTGSRSIT*LKWKWISSPALGFL
Trigger: GAGGAAACCAAGGGCAGGCGAAGAAATCCACTTCCACTTTAGCAAGGTGATAGATCTGGACCCTGTGGAGCACCAAAGCCGAAGGCAGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR TCA 90 bp GGGGTGATGGCGGTTCCTCTCTCTTGTCCTGAGCTTTTAAGCCACCATCCTCGGTTCAGCTTTCCATCTTaGGCTGCTTTGTTGGTTGCT +
Preference number: 2 (lower is better)
Translates to: GVMAVPLSCPELLSHHPRFSFPS*AALLVA
Trigger: AGCAACCAACAAAGCAGCTCAAGATGGAAAGCTGAA...CCGAGGATGGTGGCTTAAAAGCTCAGGACAAGAGAGAGGAACCGCCATCACCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR GCA 90 bp CTTGGTTTCCTCAGGGACATCGGAGTCTCTGTCTCCGATAGAGGCAGATCACAGAAGGCCTGGTGGACGTaGAGCTCAAAAAGATTCTCG +
Preference number: 2 (lower is better)
Translates to: LGFLRDIGVSVSDRGRSQKAWWT*SSKRFS
Trigger: CGAGAATCTTTTTGAGCTGCACGTCCACCAGGCCTT...CTGTGATCTGCCTCTATCGGAGACAGAGACTCCGATGTCCCTGAGGAAACCAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR CCA 90 bp CCTCCGTCCGTCCCTTTATCAGTTCCAGATCTGCAGTTCTCAAGAACGTCCTTGAGCTGGGCTGGTGTCTaGTCTTCAGTGGTTCTGGTT +
Preference number: 2 (lower is better)
Translates to: PPSVPLSVPDLQFSRTSLSWAGV*SSVVLV
Trigger: AACCAGAACCACTGAAGACCAGACACCAGCCCAGCT...CAAGGACGTTCTTGAGAACTGCAGATCTGGAACTGATAAAGGGACGGACGGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR-3UTR CCA 90 bp AAGGCCTGGTGGACGTGCAGCTCAAAAAGATTCTCGCTTGGATGCAGCAGAGACAGCACGGCTGCCCTGTaGAAATTCTTCCAGCTGTTT +
Preference number: 2 (lower is better)
Translates to: KAWWTCSSKRFSLGCSRDSTAAL*KFFQLF
Trigger: AAACAGCTGGAAGAATTTCCACAGGGCAGCCGTGCT...GTCTCTGCTGCATCCAAGCGAGAATCTTTTTGAGCTGCACGTCCACCAGGCCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR CCA 90 bp TGCTCCACAGGGTCCAGATCTATCACCTTGCTAAAGTGGAAGTGGATTTCTTCGGGGGTCAGGAAGGCCTaGTGGACGTGCAGCTCAAAA +
Preference number: 2 (lower is better)
Translates to: CSTGSRSITLLKWKWISSGVRKA*WTCSSK
Trigger: TTTTGAGCTGCACGTCCACCAGGCCTTCCTGACCCC...CGAAGAAATCCACTTCCACTTTAGCAAGGTGATAGATCTGGACCCTGTGGAGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR CCA 90 bp CTTGGTTTCCTCAGGGACATCGGAGTCTCTGTCTCCGATAGAGGCAGATCACAGCCAGTAGCAAGGACATaGTATTCACTAGCCATGGCC +
Preference number: 2 (lower is better)
Translates to: LGFLRDIGVSVSDRGRSQPVART*YSLAMA
Trigger: GGCCATGGCTAGTGAATACCATGTCCTTGCTACTGG...CTGTGATCTGCCTCTATCGGAGACAGAGACTCCGATGTCCCTGAGGAAACCAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR GCA 90 bp GCTAGCCTCAAATGTATGATCCTCTCGCTCTGCCTCCCAAGTGCTAAGGCTACAAAGGCTGGGCACTGCTaGTCTTCCCTTTACTTTCTC +
Preference number: 2 (lower is better)
Translates to: ASLKCMILSLCLPSAKATKAGHC*SSLYFL
Trigger: GAGAAAGTAAAGGGAAGAGCAGCAGTGCCCAGCCTT...TGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCATACATTTGAGGCTAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR-3UTR CCA 90 bp TGCTCCACAGGGTCCAGATCTATCACCTTGCTAAAGTGGAAGTGGATTTCTTCGCAGAAAGTGGTAGGTTaGGTGTCGCCAGCCTGTGTG +
Preference number: 2 (lower is better)
Translates to: CSTGSRSITLLKWKWISSQKVVG*VSPACV
Trigger: CACACAGGCTGGCGACACCCAACCTACCACTTTCTG...CGAAGAAATCCACTTCCACTTTAGCAAGGTGATAGATCTGGACCCTGTGGAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CAA 90 bp CAGCCAGTTCACACAGCTCTTCTGGAGATGAGGCTACAGTGGCAGTaGACTGAAGGCTCTCTTCTTCCTGTTCATGCTGGTAAAGGATGT +
Preference number: 2 (lower is better)
Translates to: QPVHTALLEMRLQWQ*TEGSLLPVHAGKGC
Trigger: ACATCCTTTACCAGCATGAACAGGAAGAAGAGAGCCTTCAGTCAACTGCCACTGTAGCCTCATCTCCAGAAGAGCTGTGTGAACTGGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000180646.8
ENSMUST00000181709.2
3UTR CAA 90 bp GAGGTCACAAGCACGGGAAACAGAGCCTGGTCTTTAAAGTATGGATaGCTGCTGGCTGGAATGATGATGGTGTCATGGTCAGGAAAGGTG +
Preference number: 2 (lower is better)
Translates to: EVTSTGNRAWSLKYG*LLAGMMMVSWSGKV
Trigger: CACCTTTCCTGACCATGACACCATCATCATTCCAGCCAGCAGCAATCCATACTTTAAAGACCAGGCTCTGTTTCCCGTGCTTGTGACCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CAA 90 bp AAAAAGGGGACCCATTCTTCCGTGAATGAGGCCTCCAGGACATCTTaGTTCTCATCCTCCTCCTCTTCCTCCTCTTCTTCCTCTTCCTCT +
Preference number: 2 (lower is better)
Translates to: KKGTHSSVNEASRTS*FSSSSSSSSSSSSS
Trigger: AGAGGAAGAGGAAGAAGAGGAGGAAGAGGAGGAGGATGAGAACAAAGATGTCCTGGAGGCCTCATTCACGGAAGAATGGGTCCCCTTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000180646.8
ENSMUST00000181627.8
3UTR-3UTR TCA 90 bp CTCCACAGGGTCCAGATCTATCACCTTGCTAAAGTGGAAGTGGATTTCTTCGCCAGGGCAGAAGGCCAGTaGGACGATTTCAATGCACAT +
Preference number: 2 (lower is better)
Translates to: LHRVQIYHLAKVEVDFFARAEGQ*DDFNAH
Trigger: ATGTGCATTGAAATCGTCTCACTGGCCTTCTGCCCT...GGCGAAGAAATCCACTTCCACTTTAGCAAGGTGATAGATCTGGACCCTGTGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR GCA 90 bp TGTCTTGGCCTAGAATATCTTGACAAGAAGAGAAGCGGGAAGAAGGCCACACCCAAGGCTGGGCACTGCTaGTCTTCCCTTTACTTTCTC +
Preference number: 2 (lower is better)
Translates to: CLGLEYLDKKRSGKKATPKAGHC*SSLYFL
Trigger: GAGAAAGTAAAGGGAAGAGCAGCAGTGCCCAGCCTT...GGGTGTGGCCTTCTTCCCGCTTCTCTTCTTGTCAAGATATTCTAGGCCAAGACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR-3UTR CCA 90 bp CCTCCGTCCGTCCCTTTATCAGTTCCAGATCTGCAGTTCTCAAGAACGTCCTTGGCCTCATGCACATTCTaGGGTTGTTTTTGCTGCATC +
Preference number: 2 (lower is better)
Translates to: PPSVPLSVPDLQFSRTSLASCTF*GCFCCI
Trigger: GATGCAGCAAAAACAACCCCAGAATGTGCATGAGGC...CAAGGACGTTCTTGAGAACTGCAGATCTGGAACTGATAAAGGGACGGACGGAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR-3UTR CCA 90 bp CCTCCGTCCGTCCCTTTATCAGTTCCAGATCTGCAGTTCTCAAGAACGTCCTTGGGTCTTCAGTGGTTCTaGTTTCTTGCCTCATGCACA +
Preference number: 2 (lower is better)
Translates to: PPSVPLSVPDLQFSRTSLGLQWF*FLASCT
Trigger: TGTGCATGAGGCAAGAAACCAGAACCACTGAAGACC...CAAGGACGTTCTTGAGAACTGCAGATCTGGAACTGATAAAGGGACGGACGGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR-3UTR CCA 90 bp TGCTCCACAGGGTCCAGATCTATCACCTTGCTAAAGTGGAAGTGGATTTCTTCGGTCAGGAAGGCCTGGTaGACGTGCAGCTCAAAAAGA +
Preference number: 2 (lower is better)
Translates to: CSTGSRSITLLKWKWISSVRKAW*TCSSKR
Trigger: TCTTTTTGAGCTGCACGTCCACCAGGCCTTCCTGAC...CGAAGAAATCCACTTCCACTTTAGCAAGGTGATAGATCTGGACCCTGTGGAGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CAA 90 bp ATCTTCAGTCATCTCCTTATAAATGCCATGGAGGGCAGCAGCTGCTaGGAGGGAAACCTTCAGCCTTCCAATTTGGATGGCCTGGTTTCT +
Preference number: 2 (lower is better)
Translates to: IFSHLLINAMEGSSC*EGNLQPSNLDGLVS
Trigger: AGAAACCAGGCCATCCAAATTGGAAGGCTGAAGGTTTCCCTCCAAGCAGCTGCTGCCCTCCATGGCATTTATAAGGAGATGACTGAAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR TCA 90 bp CCTCCGTCCGTCCCTTTATCAGTTCCAGATCTGCAGTTCTCAAGAACGTCCTTGGTTGGTTGCTTCCGATaGTCAGCTTTGAAATACTGG +
Preference number: 2 (lower is better)
Translates to: PPSVPLSVPDLQFSRTSLVGCFR*SALKYW
Trigger: CCAGTATTTCAAAGCTGATCATCGGAAGCAACCAAC...CAAGGACGTTCTTGAGAACTGCAGATCTGGAACTGATAAAGGGACGGACGGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR-3UTR GCA 90 bp TTATCAGTTCCAGATCTGCAGTTCTCAAGAACGTCCTTGGGCTCTGCTGATGACAAGGCTGGGCACTGCTaGTCTTCCCTTTACTTTCTC +
Preference number: 2 (lower is better)
Translates to: LSVPDLQFSRTSLGSADDKAGHC*SSLYFL
Trigger: GAGAAAGTAAAGGGAAGAGCAGCAGTGCCCAGCCTT...GTCATCAGCAGAGCCCAAGGACGTTCTTGAGAACTGCAGATCTGGAACTGATAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR-3UTR CCA 90 bp AAGTCGTGTCTTGGCCTAGAATATCTTGACAAGAAGAGAAGCGGGAAGAAGGCCTGCAGTGTCCTGTGTTaGTTGCTTCCGATGATCAGC +
Preference number: 2 (lower is better)
Translates to: KSCLGLEYLDKKRSGKKACSVLC*LLPMIS
Trigger: GCTGATCATCGGAAGCAACCAACACAGGACACTGCA...GGCCTTCTTCCCGCTTCTCTTCTTGTCAAGATATTCTAGGCCAAGACACGACTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR-3UTR CCA 90 bp AGTCAGTCCTCCGTCCGTCCCTTTATCAGTTCCAGATCTGCAGTTCTCAAGAACGGTCTTCAGTGGTTCTaGTTTCTTGCCTCATGCACA +
Preference number: 2 (lower is better)
Translates to: SQSSVRPFISSRSAVLKNGLQWF*FLASCT
Trigger: TGTGCATGAGGCAAGAAACCAGAACCACTGAAGACC...GTTCTTGAGAACTGCAGATCTGGAACTGATAAAGGGACGGACGGAGGACTGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR-3UTR CCA 90 bp TGCTATGCAGCCATGGCTTACCTTGAAGTCACTGTAAGCCAGGCTAGCCTCAAAGGTCTTCAGTGGTTCTaGTTTCTTGCCTCATGCACA +
Preference number: 2 (lower is better)
Translates to: CYAAMAYLEVTVSQASLKGLQWF*FLASCT
Trigger: TGTGCATGAGGCAAGAAACCAGAACCACTGAAGACC...TTTGAGGCTAGCCTGGCTTACAGTGACTTCAAGGTAAGCCATGGCTGCATAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR CAA 90 bp AGGGACATCGGAGTCTCTGTCTCCGATAGAGGCAGATCACAGAATTaGTACTCCACATATACCTGCTGGATAGTCTCATCAGACATGACG +
Preference number: 2 (lower is better)
Translates to: RDIGVSVSDRGRSQN*YSTYTCWIVSSDMT
Trigger: CGTCATGTCTGATGAGACTATCCAGCAGGTATATGTGGAGTACAAATTCTGTGATCTGCCTCTATCGGAGACAGAGACTCCGATGTCCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR GCA 90 bp TGCAGTTCTCAAGAACGTCCTTGGGCTCTGCTGATGACTGTGACTTGGCTGAGCCCATATGTGGTGCAGTaGTCAAACACAAATTACCAT +
Preference number: 2 (lower is better)
Translates to: CSSQERPWALLMTVTWLSPYVVQ*SNTNYH
Trigger: ATGGTAATTTGTGTTTGAGCACTGCACCACATATGG...GCTCAGCCAAGTCACAGTCATCAGCAGAGCCCAAGGACGTTCTTGAGAACTGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR-3UTR GCA 90 bp GCTAGCCTCAAATGTATGATCCTCTCGCTCTGCCTCCCAAGTGCTAAGGCTACATGGTTTCTTGCCTCATaGACATTCTGGGGTTGTTTT +
Preference number: 2 (lower is better)
Translates to: ASLKCMILSLCLPSAKATWFLAS*TFWGCF
Trigger: AAAACAACCCCAGAATGTGCATGAGGCAAGAAACCA...TGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCATACATTTGAGGCTAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR-3UTR CCA 90 bp TTATCAGTTCCAGATCTGCAGTTCTCAAGAACGTCCTTGGGCTCTGCTGATGACGCCTCATGCACATTCTaGGGTTGTTTTTGCTGCATC +
Preference number: 2 (lower is better)
Translates to: LSVPDLQFSRTSLGSADDASCTF*GCFCCI
Trigger: GATGCAGCAAAAACAACCCCAGAATGTGCATGAGGC...GTCATCAGCAGAGCCCAAGGACGTTCTTGAGAACTGCAGATCTGGAACTGATAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR-3UTR CCA 90 bp TGCTCCACAGGGTCCAGATCTATCACCTTGCTAAAGTGGAAGTGGATTTCTTCGAGCTCGCTTAGCACCTaGGATAAGTCATTCTCGTCT +
Preference number: 2 (lower is better)
Translates to: CSTGSRSITLLKWKWISSSSLST*DKSFSS
Trigger: AGACGAGAATGACTTATCCCAGGTGCTAAGCGAGCT...CGAAGAAATCCACTTCCACTTTAGCAAGGTGATAGATCTGGACCCTGTGGAGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR GCA 90 bp AGTCAGTCCTCCGTCCGTCCCTTTATCAGTTCCAGATCTGCAGTTCTCAAGAACTGGGGTTGTTTTTGCTaGATCAGAAGACAAACACTG +
Preference number: 2 (lower is better)
Translates to: SQSSVRPFISSRSAVLKNWGCFC*IRRQTL
Trigger: CAGTGTTTGTCTTCTGATGCAGCAAAAACAACCCCA...GTTCTTGAGAACTGCAGATCTGGAACTGATAAAGGGACGGACGGAGGACTGACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR-3UTR GCA 90 bp TGCTATGCAGCCATGGCTTACCTTGAAGTCACTGTAAGCCAGGCTAGCCTCAAATGGTTTCTTGCCTCATaGACATTCTGGGGTTGTTTT +
Preference number: 2 (lower is better)
Translates to: CYAAMAYLEVTVSQASLKWFLAS*TFWGCF
Trigger: AAAACAACCCCAGAATGTGCATGAGGCAAGAAACCA...TTTGAGGCTAGCCTGGCTTACAGTGACTTCAAGGTAAGCCATGGCTGCATAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR-3UTR CCA 90 bp TGCAGTTCTCAAGAACGTCCTTGGGCTCTGCTGATGACTGTGACTTGGCTGAGCTTAAAGGAGTCAACATaGATCTCAAAGAGTAAGTCG +
Preference number: 2 (lower is better)
Translates to: CSSQERPWALLMTVTWLSLKEST*ISKSKS
Trigger: CGACTTACTCTTTGAGATCCATGTTGACTCCTTTAA...GCTCAGCCAAGTCACAGTCATCAGCAGAGCCCAAGGACGTTCTTGAGAACTGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR CAA 90 bp CTTTTCCAAATCTTCAACTCTGACCTGAAACTGCTTTATGCAATGTaGTGGATCGGAGCCAGAGTCTTAGGTGTGCACGGTAAGTACTCC +
Preference number: 2 (lower is better)
Translates to: LFQIFNSDLKLLYAM*WIGARVLGVHGKYS
Trigger: GGAGTACTTACCGTGCACACCTAAGACTCTGGCTCCGATCCACAACATTGCATAAAGCAGTTTCAGGTCAGAGTTGAAGATTTGGAAAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR TCA 90 bp CCTCCGTCCGTCCCTTTATCAGTTCCAGATCTGCAGTTCTCAAGAACGTCCTTGGCCACGTCATTAGTTTaGAAAACAGATAGCAAGATA +
Preference number: 2 (lower is better)
Translates to: PPSVPLSVPDLQFSRTSLATSLV*KTDSKI
Trigger: TATCTTGCTATCTGTTTTTCAAACTAATGACGTGGC...CAAGGACGTTCTTGAGAACTGCAGATCTGGAACTGATAAAGGGACGGACGGAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR-3UTR TCA 90 bp AGGCAGATCACAGAATTTGTACTCCACATATACCTGCTGGATAGTCTCATCAGATCACTGGACTCTCTCTaGTCTGTCTGTGGGAGTAGA +
Preference number: 2 (lower is better)
Translates to: RQITEFVLHIYLLDSLIRSLDSL*SVCGSR
Trigger: TCTACTCCCACAGACAGATCAGAGAGAGTCCAGTGA...TCTGATGAGACTATCCAGCAGGTATATGTGGAGTACAAATTCTGTGATCTGCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR GCA 90 bp GTGTCTGGTCTTCAGTGGTTCTGGTTTCTTGCCTCATGCACATTCTGGGGTTGTCAAGTCCATATGTGGTaGAGTGCTCAAACACAAATT +
Preference number: 2 (lower is better)
Translates to: VSGLQWFWFLASCTFWGCQVHMW*SAQTQI
Trigger: AATTTGTGTTTGAGCACTGCACCACATATGGACTTG...ACAACCCCAGAATGTGCATGAGGCAAGAAACCAGAACCACTGAAGACCAGACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR-3UTR GCA 90 bp AGTCAGTCCTCCGTCCGTCCCTTTATCAGTTCCAGATCTGCAGTTCTCAAGAACCAAGTCCATATGTGGTaGAGTGCTCAAACACAAATT +
Preference number: 2 (lower is better)
Translates to: SQSSVRPFISSRSAVLKNQVHMW*SAQTQI
Trigger: AATTTGTGTTTGAGCACTGCACCACATATGGACTTG...GTTCTTGAGAACTGCAGATCTGGAACTGATAAAGGGACGGACGGAGGACTGACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR-3UTR CCA 90 bp ATGATCCTCTCGCTCTGCCTCCCAAGTGCTAAGGCTACAGGCTTGAGTCACTGTAGGAGACCAGGTTTATaGCATGTCATGTTATTTTAT +
Preference number: 2 (lower is better)
Translates to: MILSLCLPSAKATGLSHCRRPGL*HVMLFY
Trigger: ATAAAATAACATGACATGCCATAAACCTGGTCTCCT...ACAGTGACTCAAGCCTGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR-3UTR CCA 90 bp CTTGGTTTCCTCAGGGACATCGGAGTCTCTGTCTCCGATAGAGGCAGATCACAGAGGAGACCAGGTTTATaGCATGTCATGTTATTTTAT +
Preference number: 2 (lower is better)
Translates to: LGFLRDIGVSVSDRGRSQRRPGL*HVMLFY
Trigger: ATAAAATAACATGACATGCCATAAACCTGGTCTCCT...CTGTGATCTGCCTCTATCGGAGACAGAGACTCCGATGTCCCTGAGGAAACCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR CCA 90 bp GCTAGCCTCAAATGTATGATCCTCTCGCTCTGCCTCCCAAGTGCTAAGGCTACATTAAAGGAGTCAACATaGATCTCAAAGAGTAAGTCG +
Preference number: 2 (lower is better)
Translates to: ASLKCMILSLCLPSAKATLKEST*ISKSKS
Trigger: CGACTTACTCTTTGAGATCCATGTTGACTCCTTTAA...TGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCATACATTTGAGGCTAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR-3UTR CCA 90 bp AAACTTGTCTCTTATGACCATTTCTTTGCAGTTTCTGAAGTCAAGTCAAGTTCATCATCGTCACCTCTGTaGGCTGCCAGGGGCTCCAGA +
Preference number: 2 (lower is better)
Translates to: KLVSYDHFFAVSEVKSSSSSSPL*AARGSR
Trigger: TCTGGAGCCCCTGGCAGCCCACAGAGGTGACGATGA...TGAACTTGACTTGACTTCAGAAACTGCAAAGAAATGGTCATAAGAGACAAGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR CCA 90 bp TGCTCCACAGGGTCCAGATCTATCACCTTGCTAAAGTGGAAGTGGATTTCTTCGATGATGATGGTGTCATaGTCAGGAAAGGTGAAGAAG +
Preference number: 2 (lower is better)
Translates to: CSTGSRSITLLKWKWISSMMMVS*SGKVKK
Trigger: CTTCTTCACCTTTCCTGACCATGACACCATCATCAT...CGAAGAAATCCACTTCCACTTTAGCAAGGTGATAGATCTGGACCCTGTGGAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR TCA 90 bp TGCTATGCAGCCATGGCTTACCTTGAAGTCACTGTAAGCCAGGCTAGCCTCAAAGCCACGTCATTAGTTTaGAAAACAGATAGCAAGATA +
Preference number: 2 (lower is better)
Translates to: CYAAMAYLEVTVSQASLKATSLV*KTDSKI
Trigger: TATCTTGCTATCTGTTTTTCAAACTAATGACGTGGC...TTTGAGGCTAGCCTGGCTTACAGTGACTTCAAGGTAAGCCATGGCTGCATAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR-3UTR TCA 90 bp TGCTCCACAGGGTCCAGATCTATCACCTTGCTAAAGTGGAAGTGGATTTCTTCGCACAGATTCACAAAATaGCAGAGGAAAGGAGAGATT +
Preference number: 2 (lower is better)
Translates to: CSTGSRSITLLKWKWISSHRFTK*QRKGEI
Trigger: AATCTCTCCTTTCCTCTGTCATTTTGTGAATCTGTG...CGAAGAAATCCACTTCCACTTTAGCAAGGTGATAGATCTGGACCCTGTGGAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR GCA 90 bp GCATCTGCTGTGTGTTTCCATTCAAGATGTTACAGCTCAGATATTCCATTCTGTAGTGAGGCTGATGACTaGTATCCAGAGGCTGATGAC +
Preference number: 2 (lower is better)
Translates to: ASAVCFHSRCYSSDIPFCSEADD*YPEADD
Trigger: GTCATCAGCCTCTGGATAGCAGTCATCAGCCTCACT...ACAGAATGGAATATCTGAGCTGTAACATCTTGAATGGAAACACACAGCAGATGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR CCA 90 bp TCACAATCTCTAGTTCTTGCTCTAGGATATCTTTTCCAGATTGAAATATCTGCCCTGGACTCATTGCTCTaGACCTTCCGAGCTCCAAGC +
Preference number: 2 (lower is better)
Translates to: SQSLVLALGYLFQIEISALDSLL*TFRAPS
Trigger: GCTTGGAGCTCGGAAGGTCCAGAGCAATGAGTCCAG...GGCAGATATTTCAATCTGGAAAAGATATCCTAGAGCAAGAACTAGAGATTGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR GCA 90 bp TCTGGTCTTCAGTGGTTCTGGTTTCTTGCCTCATGCACATTCTGGGGTTGTTTTCCATATGTGGTGCAGTaGTCAAACACAAATTACCAT +
Preference number: 2 (lower is better)
Translates to: SGLQWFWFLASCTFWGCFPYVVQ*SNTNYH
Trigger: ATGGTAATTTGTGTTTGAGCACTGCACCACATATGG...AAAACAACCCCAGAATGTGCATGAGGCAAGAAACCAGAACCACTGAAGACCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR-3UTR CCA 90 bp TGTCTTGGCCTAGAATATCTTGACAAGAAGAGAAGCGGGAAGAAGGCCACACCCAGGAGACCAGGTTTATaGCATGTCATGTTATTTTAT +
Preference number: 2 (lower is better)
Translates to: CLGLEYLDKKRSGKKATPRRPGL*HVMLFY
Trigger: ATAAAATAACATGACATGCCATAAACCTGGTCTCCT...GGGTGTGGCCTTCTTCCCGCTTCTCTTCTTGTCAAGATATTCTAGGCCAAGACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR-3UTR CCA 90 bp AAACTTGTCTCTTATGACCATTTCTTTGCAGTTTCTGAAGTCAAGTCAAGTTCAGTGACTTGGCTGAGCTaGGCTGGTGTCTGGTCTTCA +
Preference number: 2 (lower is better)
Translates to: KLVSYDHFFAVSEVKSSSVTWLS*AGVWSS
Trigger: TGAAGACCAGACACCAGCCCAGCTCAGCCAAGTCAC...TGAACTTGACTTGACTTCAGAAACTGCAAAGAAATGGTCATAAGAGACAAGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR-3UTR CCA 90 bp ATCTGCTGTGTGTTTCCATTCAAGATGTTACAGCTCAGATATTCCATTCTGTTCGAGATGAGGCTACAGTaGCAGTTGACTGAAGGCTCT +
Preference number: 2 (lower is better)
Translates to: ICCVFPFKMLQLRYSILFEMRLQ*QLTEGS
Trigger: AGAGCCTTCAGTCAACTGCCACTGTAGCCTCATCTC...GAACAGAATGGAATATCTGAGCTGTAACATCTTGAATGGAAACACACAGCAGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR CCA 90 bp GCATCTGCTGTGTGTTTCCATTCAAGATGTTACAGCTCAGATATTCCATTCTGTGAGCTTTTGGTTCACTaGACTCTCTCTGATCTGTCT +
Preference number: 2 (lower is better)
Translates to: ASAVCFHSRCYSSDIPFCELLVH*TLSDLS
Trigger: AGACAGATCAGAGAGAGTCCAGTGAACCAAAAGCTC...ACAGAATGGAATATCTGAGCTGTAACATCTTGAATGGAAACACACAGCAGATGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR CCA 90 bp AAAGGTTCACTTATTCAGAAGTCATTTCTAGGATGTGAGGGATGCTCCTGTCTCAAAAAGATTCTCGCTTaGATGCAGCAGAGACATGTC +
Preference number: 2 (lower is better)
Translates to: KGSLIQKSFLGCEGCSCLKKILA*MQQRHV
Trigger: GACATGTCTCTGCTGCATCCAAGCGAGAATCTTTTT...GAGACAGGAGCATCCCTCACATCCTAGAAATGACTTCTGAATAAGTGAACCTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR CCA 90 bp ATCTTTTCCAGATTGAAATATCTGCCACAGTTCAAGGTATGCATAGCCTATATCTGTTCACAGGATTCCTaGTCTGCTAGGGAGAAGGCT +
Preference number: 2 (lower is better)
Translates to: IFSRLKYLPQFKVCIAYICSQDS*SAREKA
Trigger: AGCCTTCTCCCTAGCAGACCAGGAATCCTGTGAACA...GATATAGGCTATGCATACCTTGAACTGTGGCAGATATTTCAATCTGGAAAAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR CCA 90 bp CTCATGCACATTCTGGGGTTGTTTTTGCTGCATCAGAAGACAAACACTGGCACTAGGAGACCAGGTTTATaGCATGTCATGTTATTTTAT +
Preference number: 2 (lower is better)
Translates to: LMHILGLFLLHQKTNTGTRRPGL*HVMLFY
Trigger: ATAAAATAACATGACATGCCATAAACCTGGTCTCCT...AGTGCCAGTGTTTGTCTTCTGATGCAGCAAAAACAACCCCAGAATGTGCATGAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR CAA 90 bp CCTTACAAGTCCATATGTGGTGCAGTGCTCAAACACAAATTACCATaGTCTCTTCTGATACATCTAAGGAAGAATGGTCATGCTTCGTAT +
Preference number: 2 (lower is better)
Translates to: PYKSICGAVLKHKLP*SLLIHLRKNGHASY
Trigger: ATACGAAGCATGACCATTCTTCCTTAGATGTATCAGAAGAGACAATGGTAATTTGTGTTTGAGCACTGCACCACATATGGACTTGTAAGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR-3UTR TCA 90 bp TTTTCCAGATTGAAATATCTGCCACAGTTCAAGGTATGCATAGCCTATATCTTGAGGATGTCGGTGTCTTaGAACTTCAGCTTTCCATCT +
Preference number: 2 (lower is better)
Translates to: FSRLKYLPQFKVCIAYILRMSVS*NFSFPS
Trigger: AGATGGAAAGCTGAAGTTTCAAGACACCGACATCCT...CAAGATATAGGCTATGCATACCTTGAACTGTGGCAGATATTTCAATCTGGAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR GCA 90 bp ATCTTTTCCAGATTGAAATATCTGCCACAGTTCAAGGTATGCATAGCCTATATCCCTGAAACTGCTTTATaGAATGTTGTGGATCGGAGC +
Preference number: 2 (lower is better)
Translates to: IFSRLKYLPQFKVCIAYIPETAL*NVVDRS
Trigger: GCTCCGATCCACAACATTGCATAAAGCAGTTTCAGG...GATATAGGCTATGCATACCTTGAACTGTGGCAGATATTTCAATCTGGAAAAGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR GCA 90 bp AAACTTGTCTCTTATGACCATTTCTTTGCAGTTTCTGAAGTCAAGTCAAGTTCACTTTCTTTCGCTTATTaGATGCCTGGAGGCTGGGTT +
Preference number: 2 (lower is better)
Translates to: KLVSYDHFFAVSEVKSSSLSFAY*MPGGWV
Trigger: AACCCAGCCTCCAGGCATGCAATAAGCGAAAGAAAG...TGAACTTGACTTGACTTCAGAAACTGCAAAGAAATGGTCATAAGAGACAAGTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR GCA 90 bp AAACTTGTCTCTTATGACCATTTCTTTGCAGTTTCTGAAGTCAAGTCAAGTTCAATGGCAAACAAAAACTaGCTTCGGCTTTGGTGCTCC +
Preference number: 2 (lower is better)
Translates to: KLVSYDHFFAVSEVKSSSMANKN*LRLWCS
Trigger: GGAGCACCAAAGCCGAAGGCAGTTTTTGTTTGCCAT...TGAACTTGACTTGACTTCAGAAACTGCAAAGAAATGGTCATAAGAGACAAGTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR CCA 90 bp AAACTTGTCTCTTATGACCATTTCTTTGCAGTTTCTGAAGTCAAGTCAAGTTCATTTCCAGTTCCAGTGTaGTCTCTGCATGTGACACTT +
Preference number: 2 (lower is better)
Translates to: KLVSYDHFFAVSEVKSSSFPVPV*SLHVTL
Trigger: AAGTGTCACATGCAGAGACCACACTGGAACTGGAAA...TGAACTTGACTTGACTTCAGAAACTGCAAAGAAATGGTCATAAGAGACAAGTTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR TCA 90 bp GCTGTGTGTTTCCATTCAAGATGTTACAGCTCAGATATTCCATTCTGTTCTTGTGCCACGTCATTAGTTTaGAAAACAGATAGCAAGATA +
Preference number: 2 (lower is better)
Translates to: AVCFHSRCYSSDIPFCSCATSLV*KTDSKI
Trigger: TATCTTGCTATCTGTTTTTCAAACTAATGACGTGGC...ACAAGAACAGAATGGAATATCTGAGCTGTAACATCTTGAATGGAAACACACAGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR TCA 90 bp AAACTTGTCTCTTATGACCATTTCTTTGCAGTTTCTGAAGTCAAGTCAAGTTCAGCCACGTCATTAGTTTaGAAAACAGATAGCAAGATA +
Preference number: 2 (lower is better)
Translates to: KLVSYDHFFAVSEVKSSSATSLV*KTDSKI
Trigger: TATCTTGCTATCTGTTTTTCAAACTAATGACGTGGC...TGAACTTGACTTGACTTCAGAAACTGCAAAGAAATGGTCATAAGAGACAAGTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000180646.8
ENSMUST00000181736.2
3UTR-3UTR TCA 90 bp AAACTTGTCTCTTATGACCATTTCTTTGCAGTTTCTGAAGTCAAGTCAAGTTCATTATTTTTCCTGTTTTaGGACAGTCTTGCTATGCAG +
Preference number: 2 (lower is better)
Translates to: KLVSYDHFFAVSEVKSSSLFFLF*DSLAMQ
Trigger: CTGCATAGCAAGACTGTCTCAAAACAGGAAAAATAA...TGAACTTGACTTGACTTCAGAAACTGCAAAGAAATGGTCATAAGAGACAAGTTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000181736.2
3UTR TCA 72 bp TTCCCAGCCGTCGACTCCGGAGGCCGCAGCACCTGGTaGTCTCAACCCGAAGCTCATTCTGAGGCGCCCAGG +
Preference number: 3 (lower is better)
Translates to: FPAVDSGGRSTW*SQPEAHSEAPR
Trigger: CCTGGGCGCCTCAGAATGAGCTTCGGGTTGAGATCACCAGGTGCTGCGGCCTCCGGAGTCGACGGCTGGGAA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR GCA 72 bp AGCGCAGTGCCCATTTGGTCCAGCAGTGGACAGACTTaGGGTGGGAGCTGCTTCCCTGTGAGCTCCGTGCTC +
Preference number: 3 (lower is better)
Translates to: SAVPIWSSSGQT*GGSCFPVSSVL
Trigger: GAGCACGGAGCTCACAGGGAAGCAGCTCCCACCGCAAGTCTGTCCACTGCTGGACCAAATGGGCACTGCGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR GCA 72 bp AAGGTGAAGAAGCGGTACATGACATACGGACTGGGCTaGCTTCCCAGCCGTCGACTCCGGAGGCCGCAGCAC +
Preference number: 3 (lower is better)
Translates to: KVKKRYMTYGLG*LPSRRLRRPQH
Trigger: GTGCTGCGGCCTCCGGAGTCGACGGCTGGGAAGGCAGCCCAGTCCGTATGTCATGTACCGCTTCTTCACCTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 72 bp GGTCTCCTCCAGCGCAGTGCCCATTTGGTCCAGCAGTaGACAGACTTGCGGTGGGAGCTGCTTCCCTGTGAG +
Preference number: 3 (lower is better)
Translates to: GLLQRSAHLVQQ*TDLRWELLPCE
Trigger: CTCACAGGGAAGCAGCTCCCACCGCAAGTCTGTCCACTGCTGGACCAAATGGGCACTGCGCTGGAGGAGACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 72 bp TCTGTGGGCTGCCAGGGGCTCCAGACACAGCGACGGTaGCAGAGTGCCATACGCGACATCTTTGAGCTGCTC +
Preference number: 3 (lower is better)
Translates to: SVGCQGLQTQRR*QSAIRDIFELL
Trigger: GAGCAGCTCAAAGATGTCGCGTATGGCACTCTGCCACCGTCGCTGTGTCTGGAGCCCCTGGCAGCCCACAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 72 bp TGCAGCAGAGACATGTCCACTTCATCGTCACCTCTGTaGGCTGCCAGGGGCTCCAGACACAGCGACGGTGGC +
Preference number: 3 (lower is better)
Translates to: CSRDMSTSSSPL*AARGSRHSDGG
Trigger: GCCACCGTCGCTGTGTCTGGAGCCCCTGGCAGCCCACAGAGGTGACGATGAAGTGGACATGTCTCTGCTGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR GCA 72 bp CAGAGACATGTCCACTTCATCGTCACCTCTGTGGGCTaGCAGGGGCTCCAGACACAGCGACGGTGGCAGAGT +
Preference number: 3 (lower is better)
Translates to: QRHVHFIVTSVG*QGLQTQRRWQS
Trigger: ACTCTGCCACCGTCGCTGTGTCTGGAGCCCCTGGCAGCCCACAGAGGTGACGATGAAGTGGACATGTCTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 72 bp AGTGCCCATTTGGTCCAGCAGTGGACAGACTTGCGGTaGGAGCTGCTTCCCTGTGAGCTCCGTGCTCCAGTG +
Preference number: 3 (lower is better)
Translates to: SAHLVQQWTDLR*ELLPCELRAPV
Trigger: CACTGGAGCACGGAGCTCACAGGGAAGCAGCTCCCACCGCAAGTCTGTCCACTGCTGGACCAAATGGGCACT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR TCA 72 bp GAGAGATTCACCAGCCTTGGGGTCAGTCACCCTCAATaGCACTCTTCCAACCACCCGGAAGCACGGCTGCCC +
Preference number: 3 (lower is better)
Translates to: ERFTSLGVSHPQ*HSSNHPEARLP
Trigger: GGGCAGCCGTGCTTCCGGGTGGTTGGAAGAGTGTCATTGAGGGTGACTGACCCCAAGGCTGGTGAATCTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR GCA 72 bp GTGAGGGCAGCAGGGGTCAGGAAGGCCTGGTGGACGTaGAGCTCAAAAAGATTCTCGCTTGGATGCAGCAGA +
Preference number: 3 (lower is better)
Translates to: VRAAGVRKAWWT*SSKRFSLGCSR
Trigger: TCTGCTGCATCCAAGCGAGAATCTTTTTGAGCTGCACGTCCACCAGGCCTTCCTGACCCCTGCTGCCCTCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR TCA 72 bp GCTGAACGGGGTGATGGCGGTTCCTCTCTCTTGTCCTaGGCTTTTAAGCCACCATCCTCGGCCTTCTTGAGC +
Preference number: 3 (lower is better)
Translates to: AERGDGGSSLLS*AFKPPSSAFLS
Trigger: GCTCAAGAAGGCCGAGGATGGTGGCTTAAAAGCTCAGGACAAGAGAGAGGAACCGCCATCACCCCGTTCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000180646.8
ENSMUST00000181627.8
3UTR GCA 72 bp CGGGAAGAAGGCCACACCCACAAGGCTGGGCACTGCTaGTCTTCCCTTTACTTTCTCTGCAGTGTCCTGTGT +
Preference number: 3 (lower is better)
Translates to: REEGHTHKAGHC*SSLYFLCSVLC
Trigger: ACACAGGACACTGCAGAGAAAGTAAAGGGAAGAGCAGCAGTGCCCAGCCTTGTGGGTGTGGCCTTCTTCCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR GCA 72 bp GACGGTGGCAGAGTGCCATACGCGACATCTTTGAGCTaGTCTGGCAAGACCTGCCGTAGGCTAATACGCACA +
Preference number: 3 (lower is better)
Translates to: DGGRVPYATSLS*SGKTCRRLIRT
Trigger: TGTGCGTATTAGCCTACGGCAGGTCTTGCCAGAGCAGCTCAAAGATGTCGCGTATGGCACTCTGCCACCGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 72 bp CACTGGACTCTCTCTGATCTGTCTGTGGGAGTAGAGTaGGCTGAGCAGCCAGTTCACACAGCTCTTCTGGAG +
Preference number: 3 (lower is better)
Translates to: HWTLSDLSVGVE*AEQPVHTALLE
Trigger: CTCCAGAAGAGCTGTGTGAACTGGCTGCTCAGCCCACTCTACTCCCACAGACAGATCAGAGAGAGTCCAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000180646.8
ENSMUST00000181709.2
3UTR CCA 72 bp CCTGGGCTTTCTTTCGCTTATTGCATGCCTGGAGGCTaGGTTTTAGGGGCAGGCACAGCCTCATCCAGTACT +
Preference number: 3 (lower is better)
Translates to: PGLSFAYCMPGG*VLGAGTASSST
Trigger: AGTACTGGATGAGGCTGTGCCTGCCCCTAAAACCCAGCCTCCAGGCATGCAATAAGCGAAAGAAAGCCCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 72 bp GGGCACCTGGGCTCGGCCAAGATAGGAGCCAGGCTCTaGGTCTTCATCATCAAAAACATAGACAGACAGAGC +
Preference number: 3 (lower is better)
Translates to: GHLGSAKIGARL*VFIIKNIDRQS
Trigger: GCTCTGTCTGTCTATGTTTTTGATGATGAAGACCCAGAGCCTGGCTCCTATCTTGGCCGAGCCCAGGTGCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR TCA 72 bp AGCTGTTTGATGCGGCTGTTCTTGAAGTCCAGGAGGTaGTTCAGCCGCTCCAGTTTCTCTTCGTGGTCCCTG +
Preference number: 3 (lower is better)
Translates to: SCLMRLFLKSRR*FSRSSFSSWSL
Trigger: CAGGGACCACGAAGAGAAACTGGAGCGGCTGAATCACCTCCTGGACTTCAAGAACAGCCGCATCAAACAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR GCA 72 bp AGCCAGGCTAGCCTCAAATGTATGATCCTCTCGCTCTaGCTCCCAAGTGCTAAGGCTACAGGCTTGAGTCAC +
Preference number: 3 (lower is better)
Translates to: SQASLKCMILSL*LPSAKATGLSH
Trigger: GTGACTCAAGCCTGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCATACATTTGAGGCTAGCCTGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR CCA 72 bp CTGATGACTGTGACTTGGCTGAGCTGGGCTGGTGTCTaGTCTTCAGTGGTTCTGGTTTCTTGCCTCATGCAC +
Preference number: 3 (lower is better)
Translates to: LMTVTWLSWAGV*SSVVLVSCLMH
Trigger: GTGCATGAGGCAAGAAACCAGAACCACTGAAGACCAGACACCAGCCCAGCTCAGCCAAGTCACAGTCATCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR CCA 72 bp ACACTCTTCCAACCACCCGGAAGCACGGCTGCCCTGTaGAAATTCTTCCAGCTGTTTGATGCGGCTGTTCTT +
Preference number: 3 (lower is better)
Translates to: TLFQPPGSTAAL*KFFQLFDAAVL
Trigger: AAGAACAGCCGCATCAAACAGCTGGAAGAATTTCCACAGGGCAGCCGTGCTTCCGGGTGGTTGGAAGAGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 72 bp GGCCTGGTGGACGTGCAGCTCAAAAAGATTCTCGCTTaGATGCAGCAGAGACATGTCCACTTCATCGTCACC +
Preference number: 3 (lower is better)
Translates to: GLVDVQLKKILA*MQQRHVHFIVT
Trigger: GGTGACGATGAAGTGGACATGTCTCTGCTGCATCCAAGCGAGAATCTTTTTGAGCTGCACGTCCACCAGGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 72 bp TCAAAACAGGTTCTCCACCATGCCACTGGAAAGAGCTaGAGCCCACAGCACTTCCGCTGTCTGAGCACTGTT +
Preference number: 3 (lower is better)
Translates to: SKQVLHHATGKS*SPQHFRCLSTV
Trigger: AACAGTGCTCAGACAGCGGAAGTGCTGTGGGCTCCAGCTCTTTCCAGTGGCATGGTGGAGAACCTGTTTTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR CAA 90 bp TGCTATGCAGCCATGGCTTACCTTGAAGTCACTGTAAGCCAGGCTAGCCTCAAAGCTGATGACTGTGACTaGGCTGAGCTGGGCTGGTGT +
Preference number: 3 (lower is better)
Translates to: CYAAMAYLEVTVSQASLKADDCD*AELGWC
Trigger: ACACCAGCCCAGCTCAGCCAAGTCACAGTCATCAGC...TTTGAGGCTAGCCTGGCTTACAGTGACTTCAAGGTAAGCCATGGCTGCATAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR TCA 72 bp TCTCGCTCTGCCTCCCAAGTGCTAAGGCTACAGGCTTaGGTCACTGTACTTAGACGAAGCATAGTTCTGGCC +
Preference number: 3 (lower is better)
Translates to: SRSASQVLRLQA*VTVLRRSIVLA
Trigger: GGCCAGAACTATGCTTCGTCTAAGTACAGTGACTCAAGCCTGTAGCCTTAGCACTTGGGAGGCAGAGCGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR TCA 72 bp ATTGCTCTGGACCTTCCGAGCTCCAAGCACACTGACTaGCAGGTAGGCCTGGGCTTTCTTTCGCTTATTGCA +
Preference number: 3 (lower is better)
Translates to: IALDLPSSKHTD*QVGLGFLSLIA
Trigger: TGCAATAAGCGAAAGAAAGCCCAGGCCTACCTGTCAGTCAGTGTGCTTGGAGCTCGGAAGGTCCAGAGCAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR TCA 72 bp ACTCATTGCTCTGGACCTTCCGAGCTCCAAGCACACTaGCTGACAGGTAGGCCTGGGCTTTCTTTCGCTTAT +
Preference number: 3 (lower is better)
Translates to: THCSGPSELQAH*LTGRPGLSFAY
Trigger: ATAAGCGAAAGAAAGCCCAGGCCTACCTGTCAGTCAGTGTGCTTGGAGCTCGGAAGGTCCAGAGCAATGAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 72 bp CTTGAGCTGCTTTGTTGGTTGCTTGACGAAAGACTTTaGTCTCCTCCAGCGCAGTGCCCATTTGGTCCAGCA +
Preference number: 3 (lower is better)
Translates to: LELLCWLLDERL*SPPAQCPFGPA
Trigger: TGCTGGACCAAATGGGCACTGCGCTGGAGGAGACCAAAGTCTTTCGTCAAGCAACCAACAAAGCAGCTCAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 72 bp CACAATGCTTTCAAAACAGGTTCTCCACCATGCCACTaGAAAGAGCTGGAGCCCACAGCACTTCCGCTGTCT +
Preference number: 3 (lower is better)
Translates to: HNAFKTGSPPCH*KELEPTALPLS
Trigger: AGACAGCGGAAGTGCTGTGGGCTCCAGCTCTTTCCAGTGGCATGGTGGAGAACCTGTTTTGAAAGCATTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 72 bp CTTGCTAAAGTGGAAGTGGATTTCTTCGCCTGCCCTTaGTTTCCTCAGGGACATCGGAGTCTCTGTCTCCGA +
Preference number: 3 (lower is better)
Translates to: LAKVEVDFFACP*FPQGHRSLCLR
Trigger: TCGGAGACAGAGACTCCGATGTCCCTGAGGAAACCAAGGGCAGGCGAAGAAATCCACTTCCACTTTAGCAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR CAA 90 bp GTCTGCCTGCACTACATACTGGGAGGTGAAGTCATAGAGAGGCTGGGGCCCAGTAAGGATGTCGGTGTCTaGAAACTTCAGCTTTCCATC +
Preference number: 3 (lower is better)
Translates to: VCLHYILGGEVIERLGPSKDVGV*KLQLSI
Trigger: GATGGAAAGCTGAAGTTTCAAGACACCGACATCCTT...ACTGGGCCCCAGCCTCTCTATGACTTCACCTCCCAGTATGTAGTGCAGGCAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR CAA 90 bp TGCTCCACAGGGTCCAGATCTATCACCTTGCTAAAGTGGAAGTGGATTTCTTCGCCATCCTCGGCCTTCTaGAGCCCTGAGAACTTCCAC +
Preference number: 3 (lower is better)
Translates to: CSTGSRSITLLKWKWISSPSSAF*SPENFH
Trigger: GTGGAAGTTCTCAGGGCTCAAGAAGGCCGAGGATGG...CGAAGAAATCCACTTCCACTTTAGCAAGGTGATAGATCTGGACCCTGTGGAGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR TCA 72 bp TTCACTAGCCATGGCCTGATGGAGATCAAGCCGTACTaGAGTTCCTTGAAGGTAGTGCAGGAGGAGGTAGTC +
Preference number: 3 (lower is better)
Translates to: FTSHGLMEIKPY*SSLKVVQEEVV
Trigger: GACTACCTCCTCCTGCACTACCTTCAAGGAACTTCAGTACGGCTTGATCTCCATCAGGCCATGGCTAGTGAA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR TCA 72 bp ATGCACATCTTCTCTGAATCGGCTTTAGGAACCGTCTaGGCCTGGGGTGTCACTATGATGTCATCGCTGTCG +
Preference number: 3 (lower is better)
Translates to: MHIFSESALGTV*AWGVTMMSSLS
Trigger: CGACAGCGATGACATCATAGTGACACCCCAGGCTCAGACGGTTCCTAAAGCCGATTCAGAGAAGATGTGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR GCA 72 bp TGGTGGACGTGCAGCTCAAAAAGATTCTCGCTTGGATaGAGCAGAGACATGTCCACTTCATCGTCACCTCTG +
Preference number: 3 (lower is better)
Translates to: WWTCSSKRFSLG*SRDMSTSSSPL
Trigger: CAGAGGTGACGATGAAGTGGACATGTCTCTGCTGCATCCAAGCGAGAATCTTTTTGAGCTGCACGTCCACCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 72 bp TATCAGTTCCAGATCTGCAGTTCTCAAGAACGTCCTTaGGCTCTGCTGATGACTGTGACTTGGCTGAGCTGG +
Preference number: 3 (lower is better)
Translates to: YQFQICSSQERP*ALLMTVTWLSW
Trigger: CCAGCTCAGCCAAGTCACAGTCATCAGCAGAGCCCAAGGACGTTCTTGAGAACTGCAGATCTGGAACTGATA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR CCA 72 bp TCCAGGTCAGAGGTCACAAGCACGGGAAACAGAGCCTaGTCTTTAAAGTATGGATTGCTGCTGGCTGGAATG +
Preference number: 3 (lower is better)
Translates to: SRSEVTSTGNRA*SLKYGLLLAGM
Trigger: CATTCCAGCCAGCAGCAATCCATACTTTAAAGACCAGGCTCTGTTTCCCGTGCTTGTGACCTCTGACCTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 72 bp ACAGGGTCCAGATCTATCACCTTGCTAAAGTGGAAGTaGATTTCTTCGCCTGCCCTTGGTTTCCTCAGGGAC +
Preference number: 3 (lower is better)
Translates to: TGSRSITLLKWK*ISSPALGFLRD
Trigger: GTCCCTGAGGAAACCAAGGGCAGGCGAAGAAATCCACTTCCACTTTAGCAAGGTGATAGATCTGGACCCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 72 bp GCAGCTGCTTGGAGGGAAACCTTCAGCCTTCCAATTTaGATGGCCTGGTTTCTAGGGCTCACAATCTCTAGT +
Preference number: 3 (lower is better)
Translates to: AAAWRETFSLPI*MAWFLGLTISS
Trigger: ACTAGAGATTGTGAGCCCTAGAAACCAGGCCATCCAAATTGGAAGGCTGAAGGTTTCCCTCCAAGCAGCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR CAA 90 bp AGGCAGATCACAGAATTTGTACTCCACATATACCTGCTGGATAGTCTCATCAGACAGCGCAGTGCCCATTaGGTCCAGCAGTGGACAGAC +
Preference number: 3 (lower is better)
Translates to: RQITEFVLHIYLLDSLIRQRSAH*VQQWTD
Trigger: GTCTGTCCACTGCTGGACCAAATGGGCACTGCGCTG...TCTGATGAGACTATCCAGCAGGTATATGTGGAGTACAAATTCTGTGATCTGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR GCA 72 bp TCACTTATTCAGAAGTCATTTCTAGGATGTGAGGGATaGTCCTGTCTCAGTGCTGAACGGGGTGATGGCGGT +
Preference number: 3 (lower is better)
Translates to: SLIQKSFLGCEG*SCLSAERGDGG
Trigger: ACCGCCATCACCCCGTTCAGCACTGAGACAGGAGCATCCCTCACATCCTAGAAATGACTTCTGAATAAGTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR GCA 72 bp TATCACCTTGCTAAAGTGGAAGTGGATTTCTTCGCCTaGCCTTGGTTTCCTCAGGGACATCGGAGTCTCTGT +
Preference number: 3 (lower is better)
Translates to: YHLAKVEVDFFA*PWFPQGHRSLC
Trigger: ACAGAGACTCCGATGTCCCTGAGGAAACCAAGGGCAGGCGAAGAAATCCACTTCCACTTTAGCAAGGTGATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR CAA 90 bp ATGATCCTCTCGCTCTGCCTCCCAAGTGCTAAGGCTACAGGCTTGAGTCACTGTATTCTGGGGTTGTTTTaGCTGCATCAGAAGACAAAC +
Preference number: 3 (lower is better)
Translates to: MILSLCLPSAKATGLSHCILGLF*LHQKTN
Trigger: GTTTGTCTTCTGATGCAGCAAAAACAACCCCAGAAT...ACAGTGACTCAAGCCTGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR TCA 72 bp TGCATCCACCTGTCCCACTTCGCCGCCTCTGTTCTGTaGCTTTATGAGAAGGGGCTTCTCAGATTTTATGTT +
Preference number: 3 (lower is better)
Translates to: CIHLSHFAASVL*LYEKGLLRFYV
Trigger: AACATAAAATCTGAGAAGCCCCTTCTCATAAAGTCACAGAACAGAGGCGGCGAAGTGGGACAGGTGGATGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR CCA 72 bp CACAAGCACGGGAAACAGAGCCTGGTCTTTAAAGTATaGATTGCTGCTGGCTGGAATGATGATGGTGTCATG +
Preference number: 3 (lower is better)
Translates to: HKHGKQSLVFKV*IAAGWNDDGVM
Trigger: CATGACACCATCATCATTCCAGCCAGCAGCAATCCATACTTTAAAGACCAGGCTCTGTTTCCCGTGCTTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 72 bp GGCAGATCACAGAATTTGTACTCCACATATACCTGCTaGATAGTCTCATCAGACATGACGTCAGCCTCAGGG +
Preference number: 3 (lower is better)
Translates to: GRSQNLYSTYTC*IVSSDMTSASG
Trigger: CCCTGAGGCTGACGTCATGTCTGATGAGACTATCCAGCAGGTATATGTGGAGTACAAATTCTGTGATCTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 72 bp TGGAGGGAAACCTTCAGCCTTCCAATTTGGATGGCCTaGTTTCTAGGGCTCACAATCTCTAGTTCTTGCTCT +
Preference number: 3 (lower is better)
Translates to: WRETFSLPIWMA*FLGLTISSSCS
Trigger: AGAGCAAGAACTAGAGATTGTGAGCCCTAGAAACCAGGCCATCCAAATTGGAAGGCTGAAGGTTTCCCTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR CAA 90 bp AGTCAGTCCTCCGTCCGTCCCTTTATCAGTTCCAGATCTGCAGTTCTCAAGAACATTCTGGGGTTGTTTTaGCTGCATCAGAAGACAAAC +
Preference number: 3 (lower is better)
Translates to: SQSSVRPFISSRSAVLKNILGLF*LHQKTN
Trigger: GTTTGTCTTCTGATGCAGCAAAAACAACCCCAGAAT...GTTCTTGAGAACTGCAGATCTGGAACTGATAAAGGGACGGACGGAGGACTGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR-3UTR CAA 90 bp AAAGGTTCACTTATTCAGAAGTCATTTCTAGGATGTGAGGGATGCTCCTGTCTCCAGCTTTTGTCAGTGTaGCCTCCAGCTCCTCCTGAT +
Preference number: 3 (lower is better)
Translates to: KGSLIQKSFLGCEGCSCLQLLSV*PPAPPD
Trigger: ATCAGGAGGAGCTGGAGGCAACACTGACAAAAGCTG...GAGACAGGAGCATCCCTCACATCCTAGAAATGACTTCTGAATAAGTGAACCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR GCA 72 bp AAACTTCAGCTTTCCATCTTGAGCTGCTTTGTTGGTTaGTTGACGAAAGACTTTGGTCTCCTCCAGCGCAGT +
Preference number: 3 (lower is better)
Translates to: KLQLSILSCFVG*LTKDFGLLQRS
Trigger: ACTGCGCTGGAGGAGACCAAAGTCTTTCGTCAAGCAACCAACAAAGCAGCTCAAGATGGAAAGCTGAAGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 72 bp CTTGAAACTTCAGCTTTCCATCTTGAGCTGCTTTGTTaGTTGCTTGACGAAAGACTTTGGTCTCCTCCAGCG +
Preference number: 3 (lower is better)
Translates to: LETSAFHLELLC*LLDERLWSPPA
Trigger: CGCTGGAGGAGACCAAAGTCTTTCGTCAAGCAACCAACAAAGCAGCTCAAGATGGAAAGCTGAAGTTTCAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 72 bp TATGGATTGCTGCTGGCTGGAATGATGATGGTGTCATaGTCAGGAAAGGTGAAGAAGCGGTACATGACATAC +
Preference number: 3 (lower is better)
Translates to: YGLLLAGMMMVS*SGKVKKRYMTY
Trigger: GTATGTCATGTACCGCTTCTTCACCTTTCCTGACCATGACACCATCATCATTCCAGCCAGCAGCAATCCATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR CAA 90 bp GATGGTGTCATGGTCAGGAAAGGTGAAGAAGCGGTACATGACATACGGACTGGGCTTATGACCATTTCTTaGCAGTTTCTGAAGTCAAGT +
Preference number: 3 (lower is better)
Translates to: DGVMVRKGEEAVHDIRTGLMTIS*QFLKSS
Trigger: ACTTGACTTCAGAAACTGCAAAGAAATGGTCATAAG...CCCAGTCCGTATGTCATGTACCGCTTCTTCACCTTTCCTGACCATGACACCATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR CAA 90 bp TCACAATCTCTAGTTCTTGCTCTAGGATATCTTTTCCAGATTGAAATATCTGCCGCAGAAAGTGGTAGGTaGGGTGTCGCCAGCCTGTGT +
Preference number: 3 (lower is better)
Translates to: SQSLVLALGYLFQIEISAAESGR*GVASLC
Trigger: ACACAGGCTGGCGACACCCAACCTACCACTTTCTGC...GGCAGATATTTCAATCTGGAAAAGATATCCTAGAGCAAGAACTAGAGATTGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR GCA 72 bp AGAGGCAGATCACAGAATTTGTACTCCACATATACCTaGTGGATAGTCTCATCAGACATGACGTCAGCCTCA +
Preference number: 3 (lower is better)
Translates to: RGRSQNLYSTYT*WIVSSDMTSAS
Trigger: TGAGGCTGACGTCATGTCTGATGAGACTATCCAGCAGGTATATGTGGAGTACAAATTCTGTGATCTGCCTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CCA 72 bp GTTTCACTGACTTCAGAAGCTTGTTCACAGGATTCCTaGTCTGCTAGGGAGAAGGCTGAAATACACAATGCT +
Preference number: 3 (lower is better)
Translates to: VSLTSEACSQDS*SAREKAEIHNA
Trigger: AGCATTGTGTATTTCAGCCTTCTCCCTAGCAGACCAGGAATCCTGTGAACAAGCTTCTGAAGTCAGTGAAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR CAA 90 bp TGTCTTGGCCTAGAATATCTTGACAAGAAGAGAAGCGGGAAGAAGGCCACACCCCTTATGACCATTTCTTaGCAGTTTCTGAAGTCAAGT +
Preference number: 3 (lower is better)
Translates to: CLGLEYLDKKRSGKKATPLMTIS*QFLKSS
Trigger: ACTTGACTTCAGAAACTGCAAAGAAATGGTCATAAG...GGGTGTGGCCTTCTTCCCGCTTCTCTTCTTGTCAAGATATTCTAGGCCAAGACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR-3UTR CAA 90 bp TTTTCCAGATTGAAATATCTGCCACAGTTCAAGGTATGCATAGCCTATATCTTGGCTTTCTTTCGCTTATaGCATGCCTGGAGGCTGGGT +
Preference number: 3 (lower is better)
Translates to: FSRLKYLPQFKVCIAYILAFFRL*HAWRLG
Trigger: ACCCAGCCTCCAGGCATGCAATAAGCGAAAGAAAGC...CAAGATATAGGCTATGCATACCTTGAACTGTGGCAGATATTTCAATCTGGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR CAA 90 bp CTCATGCACATTCTGGGGTTGTTTTTGCTGCATCAGAAGACAAACACTGGCACTCTTATGACCATTTCTTaGCAGTTTCTGAAGTCAAGT +
Preference number: 3 (lower is better)
Translates to: LMHILGLFLLHQKTNTGTLMTIS*QFLKSS
Trigger: ACTTGACTTCAGAAACTGCAAAGAAATGGTCATAAG...AGTGCCAGTGTTTGTCTTCTGATGCAGCAAAAACAACCCCAGAATGTGCATGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR-3UTR CAA 90 bp TTTTCCAGATTGAAATATCTGCCACAGTTCAAGGTATGCATAGCCTATATCTTGTCTCGTCTTGAGCTTTaGGTTCACTGGACTCTCTCT +
Preference number: 3 (lower is better)
Translates to: FSRLKYLPQFKVCIAYILSRLEL*VHWTLS
Trigger: AGAGAGAGTCCAGTGAACCAAAAGCTCAAGACGAGA...CAAGATATAGGCTATGCATACCTTGAACTGTGGCAGATATTTCAATCTGGAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR-3UTR CAA 90 bp TTTTCCAGATTGAAATATCTGCCACAGTTCAAGGTATGCATAGCCTATATCTTGACTTTGATGGATCCATaGGACTTCTCCCCAGAGTCT +
Preference number: 3 (lower is better)
Translates to: FSRLKYLPQFKVCIAYILTLMDP*DFSPES
Trigger: AGACTCTGGGGAGAAGTCCAATGGATCCATCAAAGT...CAAGATATAGGCTATGCATACCTTGAACTGTGGCAGATATTTCAATCTGGAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CAA 72 bp CAGCGCAGTGCCCATTTGGTCCAGCAGTGGACAGACTaGCGGTGGGAGCTGCTTCCCTGTGAGCTCCGTGCT +
Preference number: 4 (lower is better)
Translates to: QRSAHLVQQWTD*RWELLPCELRA
Trigger: AGCACGGAGCTCACAGGGAAGCAGCTCCCACCGCAAGTCTGTCCACTGCTGGACCAAATGGGCACTGCGCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
CDS-3UTR TCA 90 bp GGGGTGATGGCGGTTCCTCTCTCTTGTCCTGAGCTTTTAAGCCACCATCCTCGGGAGCTCCAAGCACACTaGCTGACAGGTAGGCCTGGG +
Preference number: 4 (lower is better)
Translates to: GVMAVPLSCPELLSHHPRELQAH*LTGRPG
Trigger: CCCAGGCCTACCTGTCAGTCAGTGTGCTTGGAGCTC...CCGAGGATGGTGGCTTAAAAGCTCAGGACAAGAGAGAGGAACCGCCATCACCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000181627.8
CDS-3UTR CCA 90 bp GGGGTGATGGCGGTTCCTCTCTCTTGTCCTGAGCTTTTAAGCCACCATCCTCGGCGCCTCTCTGGCTCCTaGAGCACAGCAAGTGTCCGT +
Preference number: 4 (lower is better)
Translates to: GVMAVPLSCPELLSHHPRRLSGS*STASVR
Trigger: ACGGACACTTGCTGTGCTCCAGGAGCCAGAGAGGCG...CCGAGGATGGTGGCTTAAAAGCTCAGGACAAGAGAGAGGAACCGCCATCACCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
CDS-3UTR CCA 90 bp GCTGAGCAGCCAGTTCACACAGCTCTTCTGGAGATGAGGCTACAGTGGCAGTTGAGTCTGCGTCCCGCGTaGACTCGAGGCTGTGCACTG +
Preference number: 4 (lower is better)
Translates to: AEQPVHTALLEMRLQWQLSLRPA*TRGCAL
Trigger: CAGTGCACAGCCTCGAGTCCACGCGGGACGCAGACT...CAACTGCCACTGTAGCCTCATCTCCAGAAGAGCTGTGTGAACTGGCTGCTCAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
CDS-3UTR TCA 90 bp GTGGGAGTAGAGTGGGCTGAGCAGCCAGTTCACACAGCTCTTCTGGAGATGAGGGGCTCTTCATGGAGGTaGAGGCGTCTGCAGTTCAGC +
Preference number: 4 (lower is better)
Translates to: VGVEWAEQPVHTALLEMRGSSWR*RRLQFS
Trigger: GCTGAACTGCAGACGCCTTCACCTCCATGAAGAGCC...CCTCATCTCCAGAAGAGCTGTGTGAACTGGCTGCTCAGCCCACTCTACTCCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
CDS-3UTR GCA 90 bp ATGATCCTCTCGCTCTGCCTCCCAAGTGCTAAGGCTACAGGCTTGAGTCACTGTCTATGTGGGGCAGTCTaGGTCCCGCGTGGACTCGAG +
Preference number: 4 (lower is better)
Translates to: MILSLCLPSAKATGLSHCLCGAV*VPRGLE
Trigger: CTCGAGTCCACGCGGGACGCAGACTGCCCCACATAG...ACAGTGACTCAAGCCTGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp GCTAGCCTCAAATGTATGATCCTCTCGCTCTGCCTCCCAAGTGCTAAGGCTACACCGCCTGCGCCTCTCTaGCTCCTGGAGCACAGCAAG +
Preference number: 4 (lower is better)
Translates to: ASLKCMILSLCLPSAKATPPAPL*LLEHSK
Trigger: CTTGCTGTGCTCCAGGAGCCAGAGAGGCGCAGGCGG...TGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCATACATTTGAGGCTAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp ATGATCCTCTCGCTCTGCCTCCCAAGTGCTAAGGCTACAGGCTTGAGTCACTGTAGTCTGCGTCCCGCGTaGACTCGAGGCTGTGCACTG +
Preference number: 4 (lower is better)
Translates to: MILSLCLPSAKATGLSHCSLRPA*TRGCAL
Trigger: CAGTGCACAGCCTCGAGTCCACGCGGGACGCAGACT...ACAGTGACTCAAGCCTGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp ACTGTGACTTGGCTGAGCTGGGCTGGTGTCTGGTCTTCAGTGGTTCTGGTTTCTGCGGGAGGGGCTGTATaGCTGCGCCTGTCATTTGGC +
Preference number: 4 (lower is better)
Translates to: TVTWLSWAGVWSSVVLVSAGGAV*LRLSFG
Trigger: GCCAAATGACAGGCGCAGCCATACAGCCCCTCCCGC...AGAAACCAGAACCACTGAAGACCAGACACCAGCCCAGCTCAGCCAAGTCACAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp CAGCCGCTCCAGTTTCTCTTCGTGGTCCCTGTTTTCCCTGTCAGCTTTTGTCAGGCGGGAGGGGCTGTATaGCTGCGCCTGTCATTTGGC +
Preference number: 4 (lower is better)
Translates to: QPLQFLFVVPVFPVSFCQAGGAV*LRLSFG
Trigger: GCCAAATGACAGGCGCAGCCATACAGCCCCTCCCGC...CTGACAAAAGCTGACAGGGAAAACAGGGACCACGAAGAGAAACTGGAGCGGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
CDS-3UTR CCA 90 bp GTGGGAGTAGAGTGGGCTGAGCAGCCAGTTCACACAGCTCTTCTGGAGATGAGGTGGACAGACTTGCGGTaGGAGCTGCTTCCCTGTGAG +
Preference number: 4 (lower is better)
Translates to: VGVEWAEQPVHTALLEMRWTDLR*ELLPCE
Trigger: CTCACAGGGAAGCAGCTCCCACCGCAAGTCTGTCCA...CCTCATCTCCAGAAGAGCTGTGTGAACTGGCTGCTCAGCCCACTCTACTCCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181709.2
3UTR CAA 72 bp ACGAAAGACTTTGGTCTCCTCCAGCGCAGTGCCCATTaGGTCCAGCAGTGGACAGACTTGCGGTGGGAGCTG +
Preference number: 4 (lower is better)
Translates to: TKDFGLLQRSAH*VQQWTDLRWEL
Trigger: CAGCTCCCACCGCAAGTCTGTCCACTGCTGGACCAAATGGGCACTGCGCTGGAGGAGACCAAAGTCTTTCGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
CDS-3UTR GCA 90 bp GGGGTGATGGCGGTTCCTCTCTCTTGTCCTGAGCTTTTAAGCCACCATCCTCGGTTCATCCTGCCCAAGTaGGGCTGGGCCCTTACATTC +
Preference number: 4 (lower is better)
Translates to: GVMAVPLSCPELLSHHPRFILPK*GWALTF
Trigger: GAATGTAAGGGCCCAGCCGCACTTGGGCAGGATGAA...CCGAGGATGGTGGCTTAAAAGCTCAGGACAAGAGAGAGGAACCGCCATCACCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
CDS-3UTR GCA 90 bp CCTCCGTCCGTCCCTTTATCAGTTCCAGATCTGCAGTTCTCAAGAACGTCCTTGCTATGTGGGGCAGTCTaGGTCCCGCGTGGACTCGAG +
Preference number: 4 (lower is better)
Translates to: PPSVPLSVPDLQFSRTSLLCGAV*VPRGLE
Trigger: CTCGAGTCCACGCGGGACGCAGACTGCCCCACATAG...CAAGGACGTTCTTGAGAACTGCAGATCTGGAACTGATAAAGGGACGGACGGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp GGGGTGATGGCGGTTCCTCTCTCTTGTCCTGAGCTTTTAAGCCACCATCCTCGGCGCTTATTGCATGCCTaGAGGCTGGGTTTTAGGGGC +
Preference number: 4 (lower is better)
Translates to: GVMAVPLSCPELLSHHPRRLLHA*RLGFRG
Trigger: GCCCCTAAAACCCAGCCTCCAGGCATGCAATAAGCG...CCGAGGATGGTGGCTTAAAAGCTCAGGACAAGAGAGAGGAACCGCCATCACCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000181627.8
CDS-3UTR TCA 90 bp CCAGTTCACACAGCTCTTCTGGAGATGAGGCTACAGTGGCAGTTGACTGAAGGCGACACATCTCCCAGCTaGGTCCTCAAGCTCACAGCC +
Preference number: 4 (lower is better)
Translates to: PVHTALLEMRLQWQLTEGDTSPS*VLKLTA
Trigger: GGCTGTGAGCTTGAGGACTCAGCTGGGAGATGTGTC...GCCTTCAGTCAACTGCCACTGTAGCCTCATCTCCAGAAGAGCTGTGTGAACTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181709.2
CDS-3UTR TCA 90 bp ACTGTGACTTGGCTGAGCTGGGCTGGTGTCTGGTCTTCAGTGGTTCTGGTTTCTCGGCTTCTCAGCTTCTaGCATCTGGAAGCCCTCTGG +
Preference number: 4 (lower is better)
Translates to: TVTWLSWAGVWSSVVLVSRLLSF*HLEALW
Trigger: CCAGAGGGCTTCCAGATGTCAGAAGCTGAGAAGCCG...AGAAACCAGAACCACTGAAGACCAGACACCAGCCCAGCTCAGCCAAGTCACAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp AAGTCGTGTCTTGGCCTAGAATATCTTGACAAGAAGAGAAGCGGGAAGAAGGCCCCGCCTGCGCCTCTCTaGCTCCTGGAGCACAGCAAG +
Preference number: 4 (lower is better)
Translates to: KSCLGLEYLDKKRSGKKAPPAPL*LLEHSK
Trigger: CTTGCTGTGCTCCAGGAGCCAGAGAGGCGCAGGCGG...GGCCTTCTTCCCGCTTCTCTTCTTGTCAAGATATTCTAGGCCAAGACACGACTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp AAACTGCTTTATGCAATGTTGTGGATCGGAGCCAGAGTCTTAGGTGTGCACGGTCCGCCTGCGCCTCTCTaGCTCCTGGAGCACAGCAAG +
Preference number: 4 (lower is better)
Translates to: KLLYAMLWIGARVLGVHGPPAPL*LLEHSK
Trigger: CTTGCTGTGCTCCAGGAGCCAGAGAGGCGCAGGCGG...ACCGTGCACACCTAAGACTCTGGCTCCGATCCACAACATTGCATAAAGCAGTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
CDS-3UTR CCA 90 bp TGTCTTGGCCTAGAATATCTTGACAAGAAGAGAAGCGGGAAGAAGGCCACACCCGCGGGAGGGGCTGTATaGCTGCGCCTGTCATTTGGC +
Preference number: 4 (lower is better)
Translates to: CLGLEYLDKKRSGKKATPAGGAV*LRLSFG
Trigger: GCCAAATGACAGGCGCAGCCATACAGCCCCTCCCGC...GGGTGTGGCCTTCTTCCCGCTTCTCTTCTTGTCAAGATATTCTAGGCCAAGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp ACTGTGACTTGGCTGAGCTGGGCTGGTGTCTGGTCTTCAGTGGTTCTGGTTTCTGGGGTCAGGAAGGCCTaGTGGACGTGCAGCTCAAAA +
Preference number: 4 (lower is better)
Translates to: TVTWLSWAGVWSSVVLVSGVRKA*WTCSSK
Trigger: TTTTGAGCTGCACGTCCACCAGGCCTTCCTGACCCC...AGAAACCAGAACCACTGAAGACCAGACACCAGCCCAGCTCAGCCAAGTCACAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111603.10
3UTR CAA 72 bp GCCAAGCCGTGGACTCTCTCCACAGTCCCTAGCACCTaGTCAAGTGAGATCCATCCAGTAGCAAGGACATGG +
Preference number: 4 (lower is better)
Translates to: AKPWTLSTVPST*SSEIHPVARTW
Trigger: CCATGTCCTTGCTACTGGATGGATCTCACTTGACAAGGTGCTAGGGACTGTGGAGAGAGTCCACGGCTTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
CDS-3UTR TCA 90 bp GCTAGCCTCAAATGTATGATCCTCTCGCTCTGCCTCCCAAGTGCTAAGGCTACAGGCTCTTCATGGAGGTaGAGGCGTCTGCAGTTCAGC +
Preference number: 4 (lower is better)
Translates to: ASLKCMILSLCLPSAKATGSSWR*RRLQFS
Trigger: GCTGAACTGCAGACGCCTTCACCTCCATGAAGAGCC...TGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCATACATTTGAGGCTAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR TCA 90 bp CCAGTTCACACAGCTCTTCTGGAGATGAGGCTACAGTGGCAGTTGACTGAAGGCAGCTCTGCAGCCTTCTaGGTGCACTCCTCTGAGCTT +
Preference number: 4 (lower is better)
Translates to: PVHTALLEMRLQWQLTEGSSAAF*VHSSEL
Trigger: AAGCTCAGAGGAGTGCACTCAGAAGGCTGCAGAGCT...GCCTTCAGTCAACTGCCACTGTAGCCTCATCTCCAGAAGAGCTGTGTGAACTGG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
CDS-3UTR TCA 90 bp TGTCCCACTTCGCCGCCTCTGTTCTGTGACTTTATGAGAAGGGGCTTCTCAGATGACACATCTCCCAGCTaGGTCCTCAAGCTCACAGCC +
Preference number: 4 (lower is better)
Translates to: CPTSPPLFCDFMRRGFSDDTSPS*VLKLTA
Trigger: GGCTGTGAGCTTGAGGACTCAGCTGGGAGATGTGTC...ATCTGAGAAGCCCCTTCTCATAAAGTCACAGAACAGAGGCGGCGAAGTGGGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR TCA 90 bp AGTCAGTCCTCCGTCCGTCCCTTTATCAGTTCCAGATCTGCAGTTCTCAAGAACGGGAGTAGAGTGGGCTaGGCAGCCAGTTCACACAGC +
Preference number: 4 (lower is better)
Translates to: SQSSVRPFISSRSAVLKNGSRVG*AASSHS
Trigger: GCTGTGTGAACTGGCTGCTCAGCCCACTCTACTCCC...GTTCTTGAGAACTGCAGATCTGGAACTGATAAAGGGACGGACGGAGGACTGACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR TCA 90 bp AGTCAGTCCTCCGTCCGTCCCTTTATCAGTTCCAGATCTGCAGTTCTCAAGAACGAGCTCCAAGCACACTaGCTGACAGGTAGGCCTGGG +
Preference number: 4 (lower is better)
Translates to: SQSSVRPFISSRSAVLKNELQAH*LTGRPG
Trigger: CCCAGGCCTACCTGTCAGTCAGTGTGCTTGGAGCTC...GTTCTTGAGAACTGCAGATCTGGAACTGATAAAGGGACGGACGGAGGACTGACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR TCA 90 bp GACTGTGACTTGGCTGAGCTGGGCTGGTGTCTGGTCTTCAGTGGTTCTGGTTTCGGCATTTCTAGGATGTaGGGGATGCTCCTGTCTCAG +
Preference number: 4 (lower is better)
Translates to: DCDLAELGWCLVFSGSGFGISRM*GMLLSQ
Trigger: CTGAGACAGGAGCATCCCTCACATCCTAGAAATGCC...GAAACCAGAACCACTGAAGACCAGACACCAGCCCAGCTCAGCCAAGTCACAGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp ACTGTGACTTGGCTGAGCTGGGCTGGTGTCTGGTCTTCAGTGGTTCTGGTTTCTCAGAAAGTGGTAGGTTaGGTGTCGCCAGCCTGTGTG +
Preference number: 4 (lower is better)
Translates to: TVTWLSWAGVWSSVVLVSQKVVG*VSPACV
Trigger: CACACAGGCTGGCGACACCCAACCTACCACTTTCTG...AGAAACCAGAACCACTGAAGACCAGACACCAGCCCAGCTCAGCCAAGTCACAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111603.10
CDS-3UTR TCA 90 bp CAGCCGCTCCAGTTTCTCTTCGTGGTCCCTGTTTTCCCTGTCAGCTTTTGTCAGCTGAGTGCACTCCTCTaGGCTTCTCTGTTCAGGCTT +
Preference number: 4 (lower is better)
Translates to: QPLQFLFVVPVFPVSFCQLSALL*ASLFRL
Trigger: AAGCCTGAACAGAGAAGCTCAGAGGAGTGCACTCAG...CTGACAAAAGCTGACAGGGAAAACAGGGACCACGAAGAGAAACTGGAGCGGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
CDS-3UTR TCA 90 bp GCTAGCCTCAAATGTATGATCCTCTCGCTCTGCCTCCCAAGTGCTAAGGCTACAAGCTCTGCAGCCTTCTaGGTGCACTCCTCTGAGCTT +
Preference number: 4 (lower is better)
Translates to: ASLKCMILSLCLPSAKATSSAAF*VHSSEL
Trigger: AAGCTCAGAGGAGTGCACTCAGAAGGCTGCAGAGCT...TGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCATACATTTGAGGCTAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR TCA 90 bp ACTGTGACTTGGCTGAGCTGGGCTGGTGTCTGGTCTTCAGTGGTTCTGGTTTCTCTACATACTGGGAGGTaGAGTCATAGAGAGGCTGGG +
Preference number: 4 (lower is better)
Translates to: TVTWLSWAGVWSSVVLVSLHTGR*SHREAG
Trigger: CCCAGCCTCTCTATGACTTCACCTCCCAGTATGTAG...AGAAACCAGAACCACTGAAGACCAGACACCAGCCCAGCTCAGCCAAGTCACAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111603.10
CDS-3UTR GCA 90 bp GCTAGCCTCAAATGTATGATCCTCTCGCTCTGCCTCCCAAGTGCTAAGGCTACATTCATCCTGCCCAAGTaGGGCTGGGCCCTTACATTC +
Preference number: 4 (lower is better)
Translates to: ASLKCMILSLCLPSAKATFILPK*GWALTF
Trigger: GAATGTAAGGGCCCAGCCGCACTTGGGCAGGATGAA...TGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCATACATTTGAGGCTAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR GCA 90 bp GTCTGCCTGCACTACATACTGGGAGGTGAAGTCATAGAGAGGCTGGGGCCCAGTCACATAGTCTTTAAATaGGGGAGGGGCTGTATGGCT +
Preference number: 4 (lower is better)
Translates to: VCLHYILGGEVIERLGPSHIVFK*GRGCMA
Trigger: AGCCATACAGCCCCTCCCGCATTTAAAGACTATGTG...ACTGGGCCCCAGCCTCTCTATGACTTCACCTCCCAGTATGTAGTGCAGGCAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
CDS-3UTR GCA 90 bp TGTCCCACTTCGCCGCCTCTGTTCTGTGACTTTATGAGAAGGGGCTTCTCAGATGGAAGCTCGAAGCTCTaGAGCCTTCTGAGTGCACTC +
Preference number: 4 (lower is better)
Translates to: CPTSPPLFCDFMRRGFSDGSSKL*SLLSAL
Trigger: GAGTGCACTCAGAAGGCTGCAGAGCTTCGAGCTTCC...ATCTGAGAAGCCCCTTCTCATAAAGTCACAGAACAGAGGCGGCGAAGTGGGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR GCA 90 bp GTGGGAGTAGAGTGGGCTGAGCAGCCAGTTCACACAGCTCTTCTGGAGATGAGGCTCTTCACTCAGCTCTaGCTTGAGCTCATTCACTTG +
Preference number: 4 (lower is better)
Translates to: VGVEWAEQPVHTALLEMRLFTQL*LELIHL
Trigger: CAAGTGAATGAGCTCAAGGCAGAGCTGAGTGAAGAG...CCTCATCTCCAGAAGAGCTGTGTGAACTGGCTGCTCAGCCCACTCTACTCCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181709.2
CDS-3UTR GCA 90 bp GATCTGTCTGTGGGAGTAGAGTGGGCTGAGCAGCCAGTTCACACAGCTCTTCTGAGCTCACAGCCTTCTTaGTCTCTTCACTCAGCTCTG +
Preference number: 4 (lower is better)
Translates to: DLSVGVEWAEQPVHTALLSSQPS*SLHSAL
Trigger: CAGAGCTGAGTGAAGAGAGCAAGAAGGCTGTGAGCT...CAGAAGAGCTGTGTGAACTGGCTGCTCAGCCCACTCTACTCCCACAGACAGATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181709.2
CDS-3UTR GCA 90 bp GATCTGTCTGTGGGAGTAGAGTGGGCTGAGCAGCCAGTTCACACAGCTCTTCTGAGTGAGGCTGATGACTaGTATCCAGAGGCTGATGAC +
Preference number: 4 (lower is better)
Translates to: DLSVGVEWAEQPVHTALLSEADD*YPEADD
Trigger: GTCATCAGCCTCTGGATAGCAGTCATCAGCCTCACT...CAGAAGAGCTGTGTGAACTGGCTGCTCAGCCCACTCTACTCCCACAGACAGATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181709.2
CDS-3UTR GCA 90 bp TGCAGTTCTCAAGAACGTCCTTGGGCTCTGCTGATGACTGTGACTTGGCTGAGCGTGGATTTCTTCGCCTaGCCTTGGTTTCCTCAGGGA +
Preference number: 4 (lower is better)
Translates to: CSSQERPWALLMTVTWLSVDFFA*PWFPQG
Trigger: TCCCTGAGGAAACCAAGGGCAGGCGAAGAAATCCAC...GCTCAGCCAAGTCACAGTCATCAGCAGAGCCCAAGGACGTTCTTGAGAACTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR GCA 90 bp TCTGGTCTTCAGTGGTTCTGGTTTCTTGCCTCATGCACATTCTGGGGTTGTTTTGTCACCTCTGTGGGCTaGCAGGGGCTCCAGACACAG +
Preference number: 4 (lower is better)
Translates to: SGLQWFWFLASCTFWGCFVTSVG*QGLQTQ
Trigger: CTGTGTCTGGAGCCCCTGGCAGCCCACAGAGGTGAC...AAAACAACCCCAGAATGTGCATGAGGCAAGAAACCAGAACCACTGAAGACCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp TTATCAGTTCCAGATCTGCAGTTCTCAAGAACGTCCTTGGGCTCTGCTGATGACCGCCTCTCTGGCTCCTaGAGCACAGCAAGTGTCCGT +
Preference number: 4 (lower is better)
Translates to: LSVPDLQFSRTSLGSADDRLSGS*STASVR
Trigger: ACGGACACTTGCTGTGCTCCAGGAGCCAGAGAGGCG...GTCATCAGCAGAGCCCAAGGACGTTCTTGAGAACTGCAGATCTGGAACTGATAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp AAGTCGTGTCTTGGCCTAGAATATCTTGACAAGAAGAGAAGCGGGAAGAAGGCCCGCCTCTCTGGCTCCTaGAGCACAGCAAGTGTCCGT +
Preference number: 4 (lower is better)
Translates to: KSCLGLEYLDKKRSGKKARLSGS*STASVR
Trigger: ACGGACACTTGCTGTGCTCCAGGAGCCAGAGAGGCG...GGCCTTCTTCCCGCTTCTCTTCTTGTCAAGATATTCTAGGCCAAGACACGACTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp TGCTATGCAGCCATGGCTTACCTTGAAGTCACTGTAAGCCAGGCTAGCCTCAAATGGACAGACTTGCGGTaGGAGCTGCTTCCCTGTGAG +
Preference number: 4 (lower is better)
Translates to: CYAAMAYLEVTVSQASLKWTDLR*ELLPCE
Trigger: CTCACAGGGAAGCAGCTCCCACCGCAAGTCTGTCCA...TTTGAGGCTAGCCTGGCTTACAGTGACTTCAAGGTAAGCCATGGCTGCATAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp GCTAGCCTCAAATGTATGATCCTCTCGCTCTGCCTCCCAAGTGCTAAGGCTACACGCTTATTGCATGCCTaGAGGCTGGGTTTTAGGGGC +
Preference number: 4 (lower is better)
Translates to: ASLKCMILSLCLPSAKATRLLHA*RLGFRG
Trigger: GCCCCTAAAACCCAGCCTCCAGGCATGCAATAAGCG...TGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCATACATTTGAGGCTAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp GTGTCTGGTCTTCAGTGGTTCTGGTTTCTTGCCTCATGCACATTCTGGGGTTGTAGTGTGGCCAAGCCGTaGACTCTCTCCACAGTCCCT +
Preference number: 4 (lower is better)
Translates to: VSGLQWFWFLASCTFWGCSVAKP*TLSTVP
Trigger: AGGGACTGTGGAGAGAGTCCACGGCTTGGCCACACT...ACAACCCCAGAATGTGCATGAGGCAAGAAACCAGAACCACTGAAGACCAGACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111603.10
3UTR CAA 72 bp AGGCCTGGTGGACGTGCAGCTCAAAAAGATTCTCGCTaGGATGCAGCAGAGACATGTCCACTTCATCGTCAC +
Preference number: 4 (lower is better)
Translates to: RPGGRAAQKDSR*DAAETCPLHRH
Trigger: GTGACGATGAAGTGGACATGTCTCTGCTGCATCCAAGCGAGAATCTTTTTGAGCTGCACGTCCACCAGGCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CAA 72 bp CGGCTTTGGTGCTCCACAGGGTCCAGATCTATCACCTaGCTAAAGTGGAAGTGGATTTCTTCGCCTGCCCTT +
Preference number: 4 (lower is better)
Translates to: RLWCSTGSRSIT*LKWKWISSPAL
Trigger: AAGGGCAGGCGAAGAAATCCACTTCCACTTTAGCAAGGTGATAGATCTGGACCCTGTGGAGCACCAAAGCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
CDS-3UTR TCA 90 bp TGTCTTGGCCTAGAATATCTTGACAAGAAGAGAAGCGGGAAGAAGGCCACACCCTCAGTCGTCATGGTGTaGGTAAGTTGGCTGGGCTCC +
Preference number: 4 (lower is better)
Translates to: CLGLEYLDKKRSGKKATPSVVMV*VSWLGS
Trigger: GGAGCCCAGCCAACTTACTCACACCATGACGACTGA...GGGTGTGGCCTTCTTCCCGCTTCTCTTCTTGTCAAGATATTCTAGGCCAAGACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR TCA 90 bp GTGTCTGGTCTTCAGTGGTTCTGGTTTCTTGCCTCATGCACATTCTGGGGTTGTTCAGTCGTCATGGTGTaGGTAAGTTGGCTGGGCTCC +
Preference number: 4 (lower is better)
Translates to: VSGLQWFWFLASCTFWGCSVVMV*VSWLGS
Trigger: GGAGCCCAGCCAACTTACTCACACCATGACGACTGA...ACAACCCCAGAATGTGCATGAGGCAAGAAACCAGAACCACTGAAGACCAGACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR TCA 90 bp CTCATGCACATTCTGGGGTTGTTTTTGCTGCATCAGAAGACAAACACTGGCACTGAGCTCCAAGCACACTaGCTGACAGGTAGGCCTGGG +
Preference number: 4 (lower is better)
Translates to: LMHILGLFLLHQKTNTGTELQAH*LTGRPG
Trigger: CCCAGGCCTACCTGTCAGTCAGTGTGCTTGGAGCTC...AGTGCCAGTGTTTGTCTTCTGATGCAGCAAAAACAACCCCAGAATGTGCATGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR TCA 90 bp AAGTCGTGTCTTGGCCTAGAATATCTTGACAAGAAGAGAAGCGGGAAGAAGGCCCGGCTTCTCAGCTTCTaGCATCTGGAAGCCCTCTGG +
Preference number: 4 (lower is better)
Translates to: KSCLGLEYLDKKRSGKKARLLSF*HLEALW
Trigger: CCAGAGGGCTTCCAGATGTCAGAAGCTGAGAAGCCG...GGCCTTCTTCCCGCTTCTCTTCTTGTCAAGATATTCTAGGCCAAGACACGACTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR TCA 90 bp ACTGTGACTTGGCTGAGCTGGGCTGGTGTCTGGTCTTCAGTGGTTCTGGTTTCTCCATTCTTCCGTGAATaGGGCCTCCAGGACATCTTT +
Preference number: 4 (lower is better)
Translates to: TVTWLSWAGVWSSVVLVSPFFRE*GLQDIF
Trigger: AAAGATGTCCTGGAGGCCTCATTCACGGAAGAATGG...AGAAACCAGAACCACTGAAGACCAGACACCAGCCCAGCTCAGCCAAGTCACAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR TCA 90 bp TGCAGTTCTCAAGAACGTCCTTGGGCTCTGCTGATGACTGTGACTTGGCTGAGCTCCTCTCTCTTGTCCTaGGCTTTTAAGCCACCATCC +
Preference number: 4 (lower is better)
Translates to: CSSQERPWALLMTVTWLSSSLLS*AFKPPS
Trigger: GGATGGTGGCTTAAAAGCTCAGGACAAGAGAGAGGA...GCTCAGCCAAGTCACAGTCATCAGCAGAGCCCAAGGACGTTCTTGAGAACTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR GCA 90 bp AGTCAGTCCTCCGTCCGTCCCTTTATCAGTTCCAGATCTGCAGTTCTCAAGAACTTCATCCTGCCCAAGTaGGGCTGGGCCCTTACATTC +
Preference number: 4 (lower is better)
Translates to: SQSSVRPFISSRSAVLKNFILPK*GWALTF
Trigger: GAATGTAAGGGCCCAGCCGCACTTGGGCAGGATGAA...GTTCTTGAGAACTGCAGATCTGGAACTGATAAAGGGACGGACGGAGGACTGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR GCA 90 bp ACTGTGACTTGGCTGAGCTGGGCTGGTGTCTGGTCTTCAGTGGTTCTGGTTTCTAGTGAGGCTGATGACTaGTATCCAGAGGCTGATGAC +
Preference number: 4 (lower is better)
Translates to: TVTWLSWAGVWSSVVLVSSEADD*YPEADD
Trigger: GTCATCAGCCTCTGGATAGCAGTCATCAGCCTCACT...AGAAACCAGAACCACTGAAGACCAGACACCAGCCCAGCTCAGCCAAGTCACAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR GCA 90 bp GACTGTGACTTGGCTGAGCTGGGCTGGTGTCTGGTCTTCAGTGGTTCTGGTTTCCTTTCTTTCGCTTATTaGATGCCTGGAGGCTGGGTT +
Preference number: 4 (lower is better)
Translates to: DCDLAELGWCLVFSGSGFLSFAY*MPGGWV
Trigger: AACCCAGCCTCCAGGCATGCAATAAGCGAAAGAAAG...GAAACCAGAACCACTGAAGACCAGACACCAGCCCAGCTCAGCCAAGTCACAGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR GCA 90 bp TGTCCCACTTCGCCGCCTCTGTTCTGTGACTTTATGAGAAGGGGCTTCTCAGATGTGGATTTCTTCGCCTaGCCTTGGTTTCCTCAGGGA +
Preference number: 4 (lower is better)
Translates to: CPTSPPLFCDFMRRGFSDVDFFA*PWFPQG
Trigger: TCCCTGAGGAAACCAAGGGCAGGCGAAGAAATCCAC...ATCTGAGAAGCCCCTTCTCATAAAGTCACAGAACAGAGGCGGCGAAGTGGGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR GCA 90 bp TGCTATGCAGCCATGGCTTACCTTGAAGTCACTGTAAGCCAGGCTAGCCTCAAATGCCTTCGGCTTTGGTaGTCCACAGGGTCCAGATCT +
Preference number: 4 (lower is better)
Translates to: CYAAMAYLEVTVSQASLKCLRLW*STGSRS
Trigger: AGATCTGGACCCTGTGGAGCACCAAAGCCGAAGGCA...TTTGAGGCTAGCCTGGCTTACAGTGACTTCAAGGTAAGCCATGGCTGCATAGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR GCA 90 bp TGTCTTGGCCTAGAATATCTTGACAAGAAGAGAAGCGGGAAGAAGGCCACACCCTGCCTTCGGCTTTGGTaGTCCACAGGGTCCAGATCT +
Preference number: 4 (lower is better)
Translates to: CLGLEYLDKKRSGKKATPCLRLW*STGSRS
Trigger: AGATCTGGACCCTGTGGAGCACCAAAGCCGAAGGCA...GGGTGTGGCCTTCTTCCCGCTTCTCTTCTTGTCAAGATATTCTAGGCCAAGACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR GCA 90 bp ACTGTGACTTGGCTGAGCTGGGCTGGTGTCTGGTCTTCAGTGGTTCTGGTTTCTAAGGCCTGGTGGACGTaGAGCTCAAAAAGATTCTCG +
Preference number: 4 (lower is better)
Translates to: TVTWLSWAGVWSSVVLVSKAWWT*SSKRFS
Trigger: CGAGAATCTTTTTGAGCTGCACGTCCACCAGGCCTT...AGAAACCAGAACCACTGAAGACCAGACACCAGCCCAGCTCAGCCAAGTCACAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp TGCAGTTCTCAAGAACGTCCTTGGGCTCTGCTGATGACTGTGACTTGGCTGAGCGTTCCTTCACCAACGTaGGCTCTTCATGGAGGTGAA +
Preference number: 4 (lower is better)
Translates to: CSSQERPWALLMTVTWLSVPSPT*ALHGGE
Trigger: TTCACCTCCATGAAGAGCCCACGTTGGTGAAGGAAC...GCTCAGCCAAGTCACAGTCATCAGCAGAGCCCAAGGACGTTCTTGAGAACTGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp GTGGGAGTAGAGTGGGCTGAGCAGCCAGTTCACACAGCTCTTCTGGAGATGAGGCTGAGGAAGGCATTATaGGCTGTATCCAATATTCCC +
Preference number: 4 (lower is better)
Translates to: VGVEWAEQPVHTALLEMRLRKAL*AVSNIP
Trigger: GGGAATATTGGATACAGCCCATAATGCCTTCCTCAG...CCTCATCTCCAGAAGAGCTGTGTGAACTGGCTGCTCAGCCCACTCTACTCCCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181709.2
CDS-3UTR CCA 90 bp GTGGGAGTAGAGTGGGCTGAGCAGCCAGTTCACACAGCTCTTCTGGAGATGAGGTTGAGCTCATTCACTTaGCTGAGGAAGGCATTATGG +
Preference number: 4 (lower is better)
Translates to: VGVEWAEQPVHTALLEMRLSSFT*LRKALW
Trigger: CCATAATGCCTTCCTCAGCCAAGTGAATGAGCTCAA...CCTCATCTCCAGAAGAGCTGTGTGAACTGGCTGCTCAGCCCACTCTACTCCCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181709.2
CDS-3UTR CCA 90 bp AAGTCGTGTCTTGGCCTAGAATATCTTGACAAGAAGAGAAGCGGGAAGAAGGCCTGGACAGACTTGCGGTaGGAGCTGCTTCCCTGTGAG +
Preference number: 4 (lower is better)
Translates to: KSCLGLEYLDKKRSGKKAWTDLR*ELLPCE
Trigger: CTCACAGGGAAGCAGCTCCCACCGCAAGTCTGTCCA...GGCCTTCTTCCCGCTTCTCTTCTTGTCAAGATATTCTAGGCCAAGACACGACTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp TGCTATGCAGCCATGGCTTACCTTGAAGTCACTGTAAGCCAGGCTAGCCTCAAACTGGACTCATTGCTCTaGACCTTCCGAGCTCCAAGC +
Preference number: 4 (lower is better)
Translates to: CYAAMAYLEVTVSQASLKLDSLL*TFRAPS
Trigger: GCTTGGAGCTCGGAAGGTCCAGAGCAATGAGTCCAG...TTTGAGGCTAGCCTGGCTTACAGTGACTTCAAGGTAAGCCATGGCTGCATAGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp ATGATCCTCTCGCTCTGCCTCCCAAGTGCTAAGGCTACAGGCTTGAGTCACTGTTGTTCACAGGATTCCTaGTCTGCTAGGGAGAAGGCA +
Preference number: 4 (lower is better)
Translates to: MILSLCLPSAKATGLSHCCSQDS*SAREKA
Trigger: TGCCTTCTCCCTAGCAGACCAGGAATCCTGTGAACA...ACAGTGACTCAAGCCTGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR TCA 90 bp CTGGTCTTCAGTGGTTCTGGTTTCTTGCCTCATGCACATTCTGGGGTTGTTTTTGGCTCTTCATGGAGGTaGAGGCGTCTGCAGTTCAGC +
Preference number: 4 (lower is better)
Translates to: LVFSGSGFLPHAHSGVVFGSSWR*RRLQFS
Trigger: GCTGAACTGCAGACGCCTTCACCTCCATGAAGAGCC...AAAAACAACCCCAGAATGTGCATGAGGCAAGAAACCAGAACCACTGAAGACCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR TCA 90 bp TGCTATGCAGCCATGGCTTACCTTGAAGTCACTGTAAGCCAGGCTAGCCTCAAACTGAGTGCACTCCTCTaGGCTTCTCTGTTCAGGCTT +
Preference number: 4 (lower is better)
Translates to: CYAAMAYLEVTVSQASLKLSALL*ASLFRL
Trigger: AAGCCTGAACAGAGAAGCTCAGAGGAGTGCACTCAG...TTTGAGGCTAGCCTGGCTTACAGTGACTTCAAGGTAAGCCATGGCTGCATAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR TCA 90 bp TCTGGTCTTCAGTGGTTCTGGTTTCTTGCCTCATGCACATTCTGGGGTTGTTTTGACACATCTCCCAGCTaGGTCCTCAAGCTCACAGCC +
Preference number: 4 (lower is better)
Translates to: SGLQWFWFLASCTFWGCFDTSPS*VLKLTA
Trigger: GGCTGTGAGCTTGAGGACTCAGCTGGGAGATGTGTC...AAAACAACCCCAGAATGTGCATGAGGCAAGAAACCAGAACCACTGAAGACCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR TCA 90 bp GACTGTGACTTGGCTGAGCTGGGCTGGTGTCTGGTCTTCAGTGGTTCTGGTTTCAGGATGTCGGTGTCTTaGAACTTCAGCTTTCCATCT +
Preference number: 4 (lower is better)
Translates to: DCDLAELGWCLVFSGSGFRMSVS*NFSFPS
Trigger: AGATGGAAAGCTGAAGTTTCAAGACACCGACATCCT...GAAACCAGAACCACTGAAGACCAGACACCAGCCCAGCTCAGCCAAGTCACAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR TCA 90 bp CCTCCGTCCGTCCCTTTATCAGTTCCAGATCTGCAGTTCTCAAGAACGTCCTTGTCACTGGACTCTCTCTaGTCTGTCTGTGGGAGTAGA +
Preference number: 4 (lower is better)
Translates to: PPSVPLSVPDLQFSRTSLSLDSL*SVCGSR
Trigger: TCTACTCCCACAGACAGATCAGAGAGAGTCCAGTGA...CAAGGACGTTCTTGAGAACTGCAGATCTGGAACTGATAAAGGGACGGACGGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR TCA 90 bp TGTCCCACTTCGCCGCCTCTGTTCTGTGACTTTATGAGAAGGGGCTTCTCAGATAGGGCAGAAGGCCAGTaGGACGATTTCAATGCACAT +
Preference number: 4 (lower is better)
Translates to: CPTSPPLFCDFMRRGFSDRAEGQ*DDFNAH
Trigger: ATGTGCATTGAAATCGTCTCACTGGCCTTCTGCCCT...ATCTGAGAAGCCCCTTCTCATAAAGTCACAGAACAGAGGCGGCGAAGTGGGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR GCA 90 bp TGCAGTTCTCAAGAACGTCCTTGGGCTCTGCTGATGACTGTGACTTGGCTGAGCCACATAGTCTTTAAATaGGGGAGGGGCTGTATGGCT +
Preference number: 4 (lower is better)
Translates to: CSSQERPWALLMTVTWLSHIVFK*GRGCMA
Trigger: AGCCATACAGCCCCTCCCGCATTTAAAGACTATGTG...GCTCAGCCAAGTCACAGTCATCAGCAGAGCCCAAGGACGTTCTTGAGAACTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR GCA 90 bp ATGATCCTCTCGCTCTGCCTCCCAAGTGCTAAGGCTACAGGCTTGAGTCACTGTCACATAGTCTTTAAATaGGGGAGGGGCTGTATGGCT +
Preference number: 4 (lower is better)
Translates to: MILSLCLPSAKATGLSHCHIVFK*GRGCMA
Trigger: AGCCATACAGCCCCTCCCGCATTTAAAGACTATGTG...ACAGTGACTCAAGCCTGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR GCA 90 bp GTGTCTGGTCTTCAGTGGTTCTGGTTTCTTGCCTCATGCACATTCTGGGGTTGTCTGCAGCCTTCTGAGTaGACTCCTCTGAGCTTCTCT +
Preference number: 4 (lower is better)
Translates to: VSGLQWFWFLASCTFWGCLQPSE*TPLSFS
Trigger: AGAGAAGCTCAGAGGAGTGCACTCAGAAGGCTGCAG...ACAACCCCAGAATGTGCATGAGGCAAGAAACCAGAACCACTGAAGACCAGACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR GCA 90 bp AGTCAGTCCTCCGTCCGTCCCTTTATCAGTTCCAGATCTGCAGTTCTCAAGAACGCGACATCTTTGAGCTaGTCAGATGTTGGAAGGCCG +
Preference number: 4 (lower is better)
Translates to: SQSSVRPFISSRSAVLKNATSLS*SDVGRP
Trigger: CGGCCTTCCAACATCTGAGCAGCTCAAAGATGTCGC...GTTCTTGAGAACTGCAGATCTGGAACTGATAAAGGGACGGACGGAGGACTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp AGACACTTTGACTGTGATGCCCTCAAATCGTTGAGTGGAGTAGAACTTGTACTTAGTCTGCGTCCCGCGTaGACTCGAGGCTGTGCACTG +
Preference number: 4 (lower is better)
Translates to: RHFDCDALKSLSGVELVLSLRPA*TRGCAL
Trigger: CAGTGCACAGCCTCGAGTCCACGCGGGACGCAGACT...AAGTACAAGTTCTACTCCACTCAACGATTTGAGGGCATCACAGTCAAAGTGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000180646.8
CDS-3UTR CCA 90 bp ATGATCCTCTCGCTCTGCCTCCCAAGTGCTAAGGCTACAGGCTTGAGTCACTGTTGGATTGCTGCTGGCTaGAATGATGATGGTGTCATG +
Preference number: 4 (lower is better)
Translates to: MILSLCLPSAKATGLSHCWIAAG*NDDGVM
Trigger: CATGACACCATCATCATTCCAGCCAGCAGCAATCCA...ACAGTGACTCAAGCCTGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp TTATCAGTTCCAGATCTGCAGTTCTCAAGAACGTCCTTGGGCTCTGCTGATGACTCCCGCCTCAGATACTaGTCCAGGTCAGAGGTCACA +
Preference number: 4 (lower is better)
Translates to: LSVPDLQFSRTSLGSADDSRLRY*SRSEVT
Trigger: TGTGACCTCTGACCTGGACCAGTATCTGAGGCGGGA...GTCATCAGCAGAGCCCAAGGACGTTCTTGAGAACTGCAGATCTGGAACTGATAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp ACTGTGACTTGGCTGAGCTGGGCTGGTGTCTGGTCTTCAGTGGTTCTGGTTTCTAGGTTTTCTCTTCTCTaGGTACTGGCCAGCCTCTAT +
Preference number: 4 (lower is better)
Translates to: TVTWLSWAGVWSSVVLVSRFSLL*VLASLY
Trigger: ATAGAGGCTGGCCAGTACCCAGAGAAGAGAAAACCT...AGAAACCAGAACCACTGAAGACCAGACACCAGCCCAGCTCAGCCAAGTCACAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp AAGTCGTGTCTTGGCCTAGAATATCTTGACAAGAAGAGAAGCGGGAAGAAGGCCTTCTTCGCCTGCCCTTaGTTTCCTCAGGGACATCGG +
Preference number: 4 (lower is better)
Translates to: KSCLGLEYLDKKRSGKKAFFACP*FPQGHR
Trigger: CCGATGTCCCTGAGGAAACCAAGGGCAGGCGAAGAA...GGCCTTCTTCCCGCTTCTCTTCTTGTCAAGATATTCTAGGCCAAGACACGACTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp TGCAGTTCTCAAGAACGTCCTTGGGCTCTGCTGATGACTGTGACTTGGCTGAGCTTCAGCCTTCCAATTTaGATGGCCTGGTTTCTAGGG +
Preference number: 4 (lower is better)
Translates to: CSSQERPWALLMTVTWLSFSLPI*MAWFLG
Trigger: CCCTAGAAACCAGGCCATCCAAATTGGAAGGCTGAA...GCTCAGCCAAGTCACAGTCATCAGCAGAGCCCAAGGACGTTCTTGAGAACTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
CDS-3UTR CCA 90 bp ATGATCCTCTCGCTCTGCCTCCCAAGTGCTAAGGCTACAGGCTTGAGTCACTGTTTCAGCCTTCCAATTTaGATGGCCTGGTTTCTAGGG +
Preference number: 4 (lower is better)
Translates to: MILSLCLPSAKATGLSHCFSLPI*MAWFLG
Trigger: CCCTAGAAACCAGGCCATCCAAATTGGAAGGCTGAA...ACAGTGACTCAAGCCTGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR CAA 72 bp CTGGGCTGGTGTCTGGTCTTCAGTGGTTCTGGTTTCTaGCCTCATGCACATTCTGGGGTTGTTTTTGCTGCA +
Preference number: 4 (lower is better)
Translates to: LGWCLVFSGSGF*PHAHSGVVFAA
Trigger: TGCAGCAAAAACAACCCCAGAATGTGCATGAGGCAAGAAACCAGAACCACTGAAGACCAGACACCAGCCCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
3UTR CAA 72 bp CACACAGCTCTTCTGGAGATGAGGCTACAGTGGCAGTaGACTGAAGGCTCTCTTCTTCCTGTTCATGCTGGT +
Preference number: 4 (lower is better)
Translates to: HTALLEMRLQWQ*TEGSLLPVHAG
Trigger: ACCAGCATGAACAGGAAGAAGAGAGCCTTCAGTCAACTGCCACTGTAGCCTCATCTCCAGAAGAGCTGTGTG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000180646.8
ENSMUST00000181709.2
3UTR CAA 72 bp CTTCAGCTTTCCATCTTGAGCTGCTTTGTTGGTTGCTaGACGAAAGACTTTGGTCTCCTCCAGCGCAGTGCC +
Preference number: 4 (lower is better)
Translates to: LQLSILSCFVGC*TKDFGLLQRSA
Trigger: GGCACTGCGCTGGAGGAGACCAAAGTCTTTCGTCAAGCAACCAACAAAGCAGCTCAAGATGGAAAGCTGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CAA 72 bp CATCTCCTTATAAATGCCATGGAGGGCAGCAGCTGCTaGGAGGGAAACCTTCAGCCTTCCAATTTGGATGGC +
Preference number: 4 (lower is better)
Translates to: HLLINAMEGSSC*EGNLQPSNLDG
Trigger: GCCATCCAAATTGGAAGGCTGAAGGTTTCCCTCCAAGCAGCTGCTGCCCTCCATGGCATTTATAAGGAGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
CDS-3UTR TCA 90 bp TCTGGTCTTCAGTGGTTCTGGTTTCTTGCCTCATGCACATTCTGGGGTTGTTTTAGCTCTGCAGCCTTCTaGGTGCACTCCTCTGAGCTT +
Preference number: 4 (lower is better)
Translates to: SGLQWFWFLASCTFWGCFSSAAF*VHSSEL
Trigger: AAGCTCAGAGGAGTGCACTCAGAAGGCTGCAGAGCT...AAAACAACCCCAGAATGTGCATGAGGCAAGAAACCAGAACCACTGAAGACCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR TCA 90 bp GACTGTGACTTGGCTGAGCTGGGCTGGTGTCTGGTCTTCAGTGGTTCTGGTTTCTCTTCAACTCTGACCTaGAACTCCTTCAGAGTTATC +
Preference number: 4 (lower is better)
Translates to: DCDLAELGWCLVFSGSGFSSTLT*NSFRVI
Trigger: GATAACTCTGAAGGAGTTTCAGGTCAGAGTTGAAGA...GAAACCAGAACCACTGAAGACCAGACACCAGCCCAGCTCAGCCAAGTCACAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR TCA 90 bp GCTGAGCAGCCAGTTCACACAGCTCTTCTGGAGATGAGGCTACAGTGGCAGTTGTCTTCAACTCTGACCTaGAACTCCTTCAGAGTTATC +
Preference number: 4 (lower is better)
Translates to: AEQPVHTALLEMRLQWQLSSTLT*NSFRVI
Trigger: GATAACTCTGAAGGAGTTTCAGGTCAGAGTTGAAGA...CAACTGCCACTGTAGCCTCATCTCCAGAAGAGCTGTGTGAACTGGCTGCTCAGC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181709.2
CDS-3UTR TCA 90 bp GAGCAGCCAGTTCACACAGCTCTTCTGGAGATGAGGCTACAGTGGCAGTTGACTCCAAATCTTCAACTCTaGCCTGAAACTCCTTCAGAG +
Preference number: 4 (lower is better)
Translates to: EQPVHTALLEMRLQWQLTPNLQL*PETPSE
Trigger: CTCTGAAGGAGTTTCAGGTCAGAGTTGAAGATTTGG...AGTCAACTGCCACTGTAGCCTCATCTCCAGAAGAGCTGTGTGAACTGGCTGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181709.2
CDS-3UTR TCA 90 bp AGACACTTTGACTGTGATGCCCTCAAATCGTTGAGTGGAGTAGAACTTGTACTTGGGAGTAGAGTGGGCTaGGCAGCCAGTTCACACAGC +
Preference number: 4 (lower is better)
Translates to: RHFDCDALKSLSGVELVLGSRVG*AASSHS
Trigger: GCTGTGTGAACTGGCTGCTCAGCCCACTCTACTCCC...AAGTACAAGTTCTACTCCACTCAACGATTTGAGGGCATCACAGTCAAAGTGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR TCA 90 bp GTGTCTGGTCTTCAGTGGTTCTGGTTTCTTGCCTCATGCACATTCTGGGGTTGTTCACTGGACTCTCTCTaGTCTGTCTGTGGGAGTAGA +
Preference number: 4 (lower is better)
Translates to: VSGLQWFWFLASCTFWGCSLDSL*SVCGSR
Trigger: TCTACTCCCACAGACAGATCAGAGAGAGTCCAGTGA...ACAACCCCAGAATGTGCATGAGGCAAGAAACCAGAACCACTGAAGACCAGACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR TCA 90 bp GCTAGCCTCAAATGTATGATCCTCTCGCTCTGCCTCCCAAGTGCTAAGGCTACACCCTCATCAGAATCTTaGGCATGTAGCATGGCAAAC +
Preference number: 4 (lower is better)
Translates to: ASLKCMILSLCLPSAKATPSSES*ACSMAN
Trigger: GTTTGCCATGCTACATGCTCAAGATTCTGATGAGGG...TGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCATACATTTGAGGCTAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR GCA 90 bp CTCATGCACATTCTGGGGTTGTTTTTGCTGCATCAGAAGACAAACACTGGCACTGGAAGCTCGAAGCTCTaGAGCCTTCTGAGTGCACTC +
Preference number: 4 (lower is better)
Translates to: LMHILGLFLLHQKTNTGTGSSKL*SLLSAL
Trigger: GAGTGCACTCAGAAGGCTGCAGAGCTTCGAGCTTCC...AGTGCCAGTGTTTGTCTTCTGATGCAGCAAAAACAACCCCAGAATGTGCATGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR GCA 90 bp AGTCAGTCCTCCGTCCGTCCCTTTATCAGTTCCAGATCTGCAGTTCTCAAGAACAGCTCACAGCCTTCTTaGTCTCTTCACTCAGCTCTG +
Preference number: 4 (lower is better)
Translates to: SQSSVRPFISSRSAVLKNSSQPS*SLHSAL
Trigger: CAGAGCTGAGTGAAGAGAGCAAGAAGGCTGTGAGCT...GTTCTTGAGAACTGCAGATCTGGAACTGATAAAGGGACGGACGGAGGACTGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR GCA 90 bp GATCTGTCTGTGGGAGTAGAGTGGGCTGAGCAGCCAGTTCACACAGCTCTTCTGTCCTTCAGAGTTATCTaGAAGATAGACACATCTCCC +
Preference number: 4 (lower is better)
Translates to: DLSVGVEWAEQPVHTALLSFRVI*KIDTSP
Trigger: GGGAGATGTGTCTATCTTGCAGATAACTCTGAAGGA...CAGAAGAGCTGTGTGAACTGGCTGCTCAGCCCACTCTACTCCCACAGACAGATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181709.2
CDS-3UTR GCA 90 bp ATGATCCTCTCGCTCTGCCTCCCAAGTGCTAAGGCTACAGGCTTGAGTCACTGTGATAGATTTGTTTTGTaGAAGAGGCAGCAAGGGCAC +
Preference number: 4 (lower is better)
Translates to: MILSLCLPSAKATGLSHCDRFVL*KRQQGH
Trigger: GTGCCCTTGCTGCCTCTTGCACAAAACAAATCTATC...ACAGTGACTCAAGCCTGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp ATGATCCTCTCGCTCTGCCTCCCAAGTGCTAAGGCTACAGGCTTGAGTCACTGTCTGAGGAAGGCATTATaGGCTGTATCCAATATTCCC +
Preference number: 4 (lower is better)
Translates to: MILSLCLPSAKATGLSHCLRKAL*AVSNIP
Trigger: GGGAATATTGGATACAGCCCATAATGCCTTCCTCAG...ACAGTGACTCAAGCCTGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp GCTAGCCTCAAATGTATGATCCTCTCGCTCTGCCTCCCAAGTGCTAAGGCTACACTCGTCTTGAGCTTTTaGTTCACTGGACTCTCTCTG +
Preference number: 4 (lower is better)
Translates to: ASLKCMILSLCLPSAKATLVLSF*FTGLSL
Trigger: CAGAGAGAGTCCAGTGAACCAAAAGCTCAAGACGAG...TGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCATACATTTGAGGCTAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp TGTCCCACTTCGCCGCCTCTGTTCTGTGACTTTATGAGAAGGGGCTTCTCAGATAGCTCGCTTAGCACCTaGGATAAGTCATTCTCGTCT +
Preference number: 4 (lower is better)
Translates to: CPTSPPLFCDFMRRGFSDSSLST*DKSFSS
Trigger: AGACGAGAATGACTTATCCCAGGTGCTAAGCGAGCT...ATCTGAGAAGCCCCTTCTCATAAAGTCACAGAACAGAGGCGGCGAAGTGGGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp CTCATGCACATTCTGGGGTTGTTTTTGCTGCATCAGAAGACAAACACTGGCACTCTGGACTCATTGCTCTaGACCTTCCGAGCTCCAAGC +
Preference number: 4 (lower is better)
Translates to: LMHILGLFLLHQKTNTGTLDSLL*TFRAPS
Trigger: GCTTGGAGCTCGGAAGGTCCAGAGCAATGAGTCCAG...AGTGCCAGTGTTTGTCTTCTGATGCAGCAAAAACAACCCCAGAATGTGCATGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp CTGGTCTTCAGTGGTTCTGGTTTCTTGCCTCATGCACATTCTGGGGTTGTTTTTTCCCGCCTCAGATACTaGTCCAGGTCAGAGGTCACA +
Preference number: 4 (lower is better)
Translates to: LVFSGSGFLPHAHSGVVFSRLRY*SRSEVT
Trigger: TGTGACCTCTGACCTGGACCAGTATCTGAGGCGGGA...AAAAACAACCCCAGAATGTGCATGAGGCAAGAAACCAGAACCACTGAAGACCAG
50% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp TGCTATGCAGCCATGGCTTACCTTGAAGTCACTGTAAGCCAGGCTAGCCTCAAATGTTCACAGGATTCCTaGTCTGCTAGGGAGAAGGCA +
Preference number: 4 (lower is better)
Translates to: CYAAMAYLEVTVSQASLKCSQDS*SAREKA
Trigger: TGCCTTCTCCCTAGCAGACCAGGAATCCTGTGAACA...TTTGAGGCTAGCCTGGCTTACAGTGACTTCAAGGTAAGCCATGGCTGCATAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp ACTGTGACTTGGCTGAGCTGGGCTGGTGTCTGGTCTTCAGTGGTTCTGGTTTCTTTGCTAAAGTGGAAGTaGATTTCTTCGCCTGCCCTT +
Preference number: 4 (lower is better)
Translates to: TVTWLSWAGVWSSVVLVSLLKWK*ISSPAL
Trigger: AAGGGCAGGCGAAGAAATCCACTTCCACTTTAGCAA...AGAAACCAGAACCACTGAAGACCAGACACCAGCCCAGCTCAGCCAAGTCACAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp CCTCCGTCCGTCCCTTTATCAGTTCCAGATCTGCAGTTCTCAAGAACGTCCTTGTTCAGCCTTCCAATTTaGATGGCCTGGTTTCTAGGG +
Preference number: 4 (lower is better)
Translates to: PPSVPLSVPDLQFSRTSLFSLPI*MAWFLG
Trigger: CCCTAGAAACCAGGCCATCCAAATTGGAAGGCTGAA...CAAGGACGTTCTTGAGAACTGCAGATCTGGAACTGATAAAGGGACGGACGGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
CDS-3UTR CCA 90 bp AGACACTTTGACTGTGATGCCCTCAAATCGTTGAGTGGAGTAGAACTTGTACTTTCATCGTCACCTCTGTaGGCTGCCAGGGGCTCCAGA +
Preference number: 4 (lower is better)
Translates to: RHFDCDALKSLSGVELVLSSSPL*AARGSR
Trigger: TCTGGAGCCCCTGGCAGCCCACAGAGGTGACGATGA...AAGTACAAGTTCTACTCCACTCAACGATTTGAGGGCATCACAGTCAAAGTGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111603.10
3UTR CAA 72 bp GTTTCTCTTCGTGGTCCCTGTTTTCCCTGTCAGCTTTaGTCAGTGTTGCCTCCAGCTCCTCCTGATAACACA +
Preference number: 4 (lower is better)
Translates to: VSLRGPCFPCQL*SVLPPAPPDNT
Trigger: TGTGTTATCAGGAGGAGCTGGAGGCAACACTGACAAAAGCTGACAGGGAAAACAGGGACCACGAAGAGAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
CDS-3UTR TCA 90 bp CTCATGCACATTCTGGGGTTGTTTTTGCTGCATCAGAAGACAAACACTGGCACTCTGAGTGCACTCCTCTaGGCTTCTCTGTTCAGGCTT +
Preference number: 4 (lower is better)
Translates to: LMHILGLFLLHQKTNTGTLSALL*ASLFRL
Trigger: AAGCCTGAACAGAGAAGCTCAGAGGAGTGCACTCAG...AGTGCCAGTGTTTGTCTTCTGATGCAGCAAAAACAACCCCAGAATGTGCATGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR TCA 90 bp TGTCCCACTTCGCCGCCTCTGTTCTGTGACTTTATGAGAAGGGGCTTCTCAGATCCAAATCTTCAACTCTaGCCTGAAACTCCTTCAGAG +
Preference number: 4 (lower is better)
Translates to: CPTSPPLFCDFMRRGFSDPNLQL*PETPSE
Trigger: CTCTGAAGGAGTTTCAGGTCAGAGTTGAAGATTTGG...ATCTGAGAAGCCCCTTCTCATAAAGTCACAGAACAGAGGCGGCGAAGTGGGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR TCA 90 bp GCTAGCCTCAAATGTATGATCCTCTCGCTCTGCCTCCCAAGTGCTAAGGCTACACCAAATCTTCAACTCTaGCCTGAAACTCCTTCAGAG +
Preference number: 4 (lower is better)
Translates to: ASLKCMILSLCLPSAKATPNLQL*PETPSE
Trigger: CTCTGAAGGAGTTTCAGGTCAGAGTTGAAGATTTGG...TGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCATACATTTGAGGCTAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR TCA 90 bp GCTAGCCTCAAATGTATGATCCTCTCGCTCTGCCTCCCAAGTGCTAAGGCTACAAGGATGTCGGTGTCTTaGAACTTCAGCTTTCCATCT +
Preference number: 4 (lower is better)
Translates to: ASLKCMILSLCLPSAKATRMSVS*NFSFPS
Trigger: AGATGGAAAGCTGAAGTTTCAAGACACCGACATCCT...TGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCATACATTTGAGGCTAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR TCA 90 bp TGCAGTTCTCAAGAACGTCCTTGGGCTCTGCTGATGACTGTGACTTGGCTGAGCCCTGATAACACATGTTaGTTTTGCGCTGCAGAAGAA +
Preference number: 4 (lower is better)
Translates to: CSSQERPWALLMTVTWLSPDNTC*FCAAEE
Trigger: TTCTTCTGCAGCGCAAAATCAACATGTGTTATCAGG...GCTCAGCCAAGTCACAGTCATCAGCAGAGCCCAAGGACGTTCTTGAGAACTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR TCA 90 bp ATGATCCTCTCGCTCTGCCTCCCAAGTGCTAAGGCTACAGGCTTGAGTCACTGTAGTCTAGTTGCACTTTaGTGGATCCATTGGACTTCT +
Preference number: 4 (lower is better)
Translates to: MILSLCLPSAKATGLSHCSLVAL*WIHWTS
Trigger: AGAAGTCCAATGGATCCATCAAAGTGCAACTAGACT...ACAGTGACTCAAGCCTGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR TCA 90 bp TCTGGTCTTCAGTGGTTCTGGTTTCTTGCCTCATGCACATTCTGGGGTTGTTTTGGCATTTCTAGGATGTaGGGGATGCTCCTGTCTCAG +
Preference number: 4 (lower is better)
Translates to: SGLQWFWFLASCTFWGCFGISRM*GMLLSQ
Trigger: CTGAGACAGGAGCATCCCTCACATCCTAGAAATGCC...AAAACAACCCCAGAATGTGCATGAGGCAAGAAACCAGAACCACTGAAGACCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR GCA 90 bp AATGATGATGGTGTCATGGTCAGGAAAGGTGAAGAAGCGGTACATGACATACGGCTGCAGCCTTCTGAGTaGACTCCTCTGAGCTTCTCT +
Preference number: 4 (lower is better)
Translates to: NDDGVMVRKGEEAVHDIRLQPSE*TPLSFS
Trigger: AGAGAAGCTCAGAGGAGTGCACTCAGAAGGCTGCAG...CCGTATGTCATGTACCGCTTCTTCACCTTTCCTGACCATGACACCATCATCATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
CDS-3UTR GCA 90 bp CCTCCGTCCGTCCCTTTATCAGTTCCAGATCTGCAGTTCTCAAGAACGTCCTTGGATAGATTTGTTTTGTaGAAGAGGCAGCAAGGGCAC +
Preference number: 4 (lower is better)
Translates to: PPSVPLSVPDLQFSRTSLDRFVL*KRQQGH
Trigger: GTGCCCTTGCTGCCTCTTGCACAAAACAAATCTATC...CAAGGACGTTCTTGAGAACTGCAGATCTGGAACTGATAAAGGGACGGACGGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR GCA 90 bp TGCAGTTCTCAAGAACGTCCTTGGGCTCTGCTGATGACTGTGACTTGGCTGAGCGTGAGACGATTTCAATaGACATCTTCTCTGAATCGG +
Preference number: 4 (lower is better)
Translates to: CSSQERPWALLMTVTWLSVRRFQ*TSSLNR
Trigger: CCGATTCAGAGAAGATGTGCATTGAAATCGTCTCAC...GCTCAGCCAAGTCACAGTCATCAGCAGAGCCCAAGGACGTTCTTGAGAACTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR GCA 90 bp AGTCAGTCCTCCGTCCGTCCCTTTATCAGTTCCAGATCTGCAGTTCTCAAGAACATGGCAAACAAAAACTaGCTTCGGCTTTGGTGCTCC +
Preference number: 4 (lower is better)
Translates to: SQSSVRPFISSRSAVLKNMANKN*LRLWCS
Trigger: GGAGCACCAAAGCCGAAGGCAGTTTTTGTTTGCCAT...GTTCTTGAGAACTGCAGATCTGGAACTGATAAAGGGACGGACGGAGGACTGACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR GCA 90 bp GACTGTGACTTGGCTGAGCTGGGCTGGTGTCTGGTCTTCAGTGGTTCTGGTTTCCCACAGTTCAAGGTATaGATAGCCTATATCTTGACA +
Preference number: 4 (lower is better)
Translates to: DCDLAELGWCLVFSGSGFPQFKV*IAYILT
Trigger: TGTCAAGATATAGGCTATGCATACCTTGAACTGTGG...GAAACCAGAACCACTGAAGACCAGACACCAGCCCAGCTCAGCCAAGTCACAGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
CDS-3UTR GCA 90 bp TGTCTTGGCCTAGAATATCTTGACAAGAAGAGAAGCGGGAAGAAGGCCACACCCAGATTCTCGCTTGGATaGAGCAGAGACATGTCCACT +
Preference number: 4 (lower is better)
Translates to: CLGLEYLDKKRSGKKATPRFSLG*SRDMST
Trigger: AGTGGACATGTCTCTGCTGCATCCAAGCGAGAATCT...GGGTGTGGCCTTCTTCCCGCTTCTCTTCTTGTCAAGATATTCTAGGCCAAGACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp CTGGTCTTCAGTGGTTCTGGTTTCTTGCCTCATGCACATTCTGGGGTTGTTTTTCAGTTCAGCTCCTTCTaGTTCATCCTGCCCAAGTGC +
Preference number: 4 (lower is better)
Translates to: LVFSGSGFLPHAHSGVVFQFSSF*FILPKC
Trigger: GCACTTGGGCAGGATGAACCAGAAGGAGCTGAACTG...AAAAACAACCCCAGAATGTGCATGAGGCAAGAAACCAGAACCACTGAAGACCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp TGTCTTGGCCTAGAATATCTTGACAAGAAGAGAAGCGGGAAGAAGGCCACACCCCTCGTCTTGAGCTTTTaGTTCACTGGACTCTCTCTG +
Preference number: 4 (lower is better)
Translates to: CLGLEYLDKKRSGKKATPLVLSF*FTGLSL
Trigger: CAGAGAGAGTCCAGTGAACCAAAAGCTCAAGACGAG...GGGTGTGGCCTTCTTCCCGCTTCTCTTCTTGTCAAGATATTCTAGGCCAAGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp ACTGTGACTTGGCTGAGCTGGGCTGGTGTCTGGTCTTCAGTGGTTCTGGTTTCTCTGGTCTTTAAAGTATaGATTGCTGCTGGCTGGAAT +
Preference number: 4 (lower is better)
Translates to: TVTWLSWAGVWSSVVLVSLVFKV*IAAGWN
Trigger: ATTCCAGCCAGCAGCAATCCATACTTTAAAGACCAG...AGAAACCAGAACCACTGAAGACCAGACACCAGCCCAGCTCAGCCAAGTCACAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp TGCAGTTCTCAAGAACGTCCTTGGGCTCTGCTGATGACTGTGACTTGGCTGAGCCTGGTCTTTAAAGTATaGATTGCTGCTGGCTGGAAT +
Preference number: 4 (lower is better)
Translates to: CSSQERPWALLMTVTWLSLVFKV*IAAGWN
Trigger: ATTCCAGCCAGCAGCAATCCATACTTTAAAGACCAG...GCTCAGCCAAGTCACAGTCATCAGCAGAGCCCAAGGACGTTCTTGAGAACTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp TGTCTTGGCCTAGAATATCTTGACAAGAAGAGAAGCGGGAAGAAGGCCACACCCAGGTTTTCTCTTCTCTaGGTACTGGCCAGCCTCTAT +
Preference number: 4 (lower is better)
Translates to: CLGLEYLDKKRSGKKATPRFSLL*VLASLY
Trigger: ATAGAGGCTGGCCAGTACCCAGAGAAGAGAAAACCT...GGGTGTGGCCTTCTTCCCGCTTCTCTTCTTGTCAAGATATTCTAGGCCAAGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
3UTR CAA 72 bp GAAACTTCAGCTTTCCATCTTGAGCTGCTTTGTTGGTaGCTTGACGAAAGACTTTGGTCTCCTCCAGCGCAG +
Preference number: 4 (lower is better)
Translates to: ETSAFHLELLCW*LDERLWSPPAQ
Trigger: CTGCGCTGGAGGAGACCAAAGTCTTTCGTCAAGCAACCAACAAAGCAGCTCAAGATGGAAAGCTGAAGTTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
3UTR CAA 72 bp AGCACGGGAAACAGAGCCTGGTCTTTAAAGTATGGATaGCTGCTGGCTGGAATGATGATGGTGTCATGGTCA +
Preference number: 4 (lower is better)
Translates to: STGNRAWSLKYG*LLAGMMMVSWS
Trigger: TGACCATGACACCATCATCATTCCAGCCAGCAGCAATCCATACTTTAAAGACCAGGCTCTGTTTCCCGTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
CDS-3UTR TCA 90 bp TGTCCCACTTCGCCGCCTCTGTTCTGTGACTTTATGAGAAGGGGCTTCTCAGATTCTTCAACTCTGACCTaGAACTCCTTCAGAGTTATC +
Preference number: 4 (lower is better)
Translates to: CPTSPPLFCDFMRRGFSDSSTLT*NSFRVI
Trigger: GATAACTCTGAAGGAGTTTCAGGTCAGAGTTGAAGA...ATCTGAGAAGCCCCTTCTCATAAAGTCACAGAACAGAGGCGGCGAAGTGGGACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR GCA 90 bp GCTAGCCTCAAATGTATGATCCTCTCGCTCTGCCTCCCAAGTGCTAAGGCTACATCCTTCAGAGTTATCTaGAAGATAGACACATCTCCC +
Preference number: 4 (lower is better)
Translates to: ASLKCMILSLCLPSAKATSFRVI*KIDTSP
Trigger: GGGAGATGTGTCTATCTTGCAGATAACTCTGAAGGA...TGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCATACATTTGAGGCTAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR GCA 90 bp ATGATCCTCTCGCTCTGCCTCCCAAGTGCTAAGGCTACAGGCTTGAGTCACTGTATGTTGATTTTGCGCTaGAGAAGAAGCATATCTCTG +
Preference number: 4 (lower is better)
Translates to: MILSLCLPSAKATGLSHCMLILR*RRSISL
Trigger: CAGAGATATGCTTCTTCTGCAGCGCAAAATCAACAT...ACAGTGACTCAAGCCTGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR GCA 90 bp AAGTCGTGTCTTGGCCTAGAATATCTTGACAAGAAGAGAAGCGGGAAGAAGGCCCTTTCTTTCGCTTATTaGATGCCTGGAGGCTGGGTT +
Preference number: 4 (lower is better)
Translates to: KSCLGLEYLDKKRSGKKALSFAY*MPGGWV
Trigger: AACCCAGCCTCCAGGCATGCAATAAGCGAAAGAAAG...GGCCTTCTTCCCGCTTCTCTTCTTGTCAAGATATTCTAGGCCAAGACACGACTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR GCA 90 bp AGACACTTTGACTGTGATGCCCTCAAATCGTTGAGTGGAGTAGAACTTGTACTTTGCCTTCGGCTTTGGTaGTCCACAGGGTCCAGATCT +
Preference number: 4 (lower is better)
Translates to: RHFDCDALKSLSGVELVLCLRLW*STGSRS
Trigger: AGATCTGGACCCTGTGGAGCACCAAAGCCGAAGGCA...AAGTACAAGTTCTACTCCACTCAACGATTTGAGGGCATCACAGTCAAAGTGTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181017.8
CDS-3UTR GCA 90 bp TGCAGTTCTCAAGAACGTCCTTGGGCTCTGCTGATGACTGTGACTTGGCTGAGCCCACAGTTCAAGGTATaGATAGCCTATATCTTGACA +
Preference number: 4 (lower is better)
Translates to: CSSQERPWALLMTVTWLSPQFKV*IAYILT
Trigger: TGTCAAGATATAGGCTATGCATACCTTGAACTGTGG...GCTCAGCCAAGTCACAGTCATCAGCAGAGCCCAAGGACGTTCTTGAGAACTGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
CDS-3UTR GCA 90 bp ATGATCCTCTCGCTCTGCCTCCCAAGTGCTAAGGCTACAGGCTTGAGTCACTGTCCACAGTTCAAGGTATaGATAGCCTATATCTTGACA +
Preference number: 4 (lower is better)
Translates to: MILSLCLPSAKATGLSHCPQFKV*IAYILT
Trigger: TGTCAAGATATAGGCTATGCATACCTTGAACTGTGG...ACAGTGACTCAAGCCTGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
CDS-3UTR CCA 90 bp ACTGTGACTTGGCTGAGCTGGGCTGGTGTCTGGTCTTCAGTGGTTCTGGTTTCTCAGGCTTTTCAACTTTaGATGTTTTCTCAGGAGATC +
Preference number: 4 (lower is better)
Translates to: TVTWLSWAGVWSSVVLVSQAFQL*MFSQEI
Trigger: GATCTCCTGAGAAAACATCCAAAGTTGAAAAGCCTG...AGAAACCAGAACCACTGAAGACCAGACACCAGCCCAGCTCAGCCAAGTCACAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp AGTCAGTCCTCCGTCCGTCCCTTTATCAGTTCCAGATCTGCAGTTCTCAAGAACCTGAGGAAGGCATTATaGGCTGTATCCAATATTCCC +
Preference number: 4 (lower is better)
Translates to: SQSSVRPFISSRSAVLKNLRKAL*AVSNIP
Trigger: GGGAATATTGGATACAGCCCATAATGCCTTCCTCAG...GTTCTTGAGAACTGCAGATCTGGAACTGATAAAGGGACGGACGGAGGACTGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp TGTCTTGGCCTAGAATATCTTGACAAGAAGAGAAGCGGGAAGAAGGCCACACCCTTGAGCTCATTCACTTaGCTGAGGAAGGCATTATGG +
Preference number: 4 (lower is better)
Translates to: CLGLEYLDKKRSGKKATPLSSFT*LRKALW
Trigger: CCATAATGCCTTCCTCAGCCAAGTGAATGAGCTCAA...GGGTGTGGCCTTCTTCCCGCTTCTCTTCTTGTCAAGATATTCTAGGCCAAGACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp CTCATGCACATTCTGGGGTTGTTTTTGCTGCATCAGAAGACAAACACTGGCACTGAGATGAGGCTACAGTaGCAGTTGACTGAAGGCTCT +
Preference number: 4 (lower is better)
Translates to: LMHILGLFLLHQKTNTGTEMRLQ*QLTEGS
Trigger: AGAGCCTTCAGTCAACTGCCACTGTAGCCTCATCTC...AGTGCCAGTGTTTGTCTTCTGATGCAGCAAAAACAACCCCAGAATGTGCATGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp TGCTATGCAGCCATGGCTTACCTTGAAGTCACTGTAAGCCAGGCTAGCCTCAAATTTCCAGTTCCAGTGTaGTCTCTGCATGTGACACTT +
Preference number: 4 (lower is better)
Translates to: CYAAMAYLEVTVSQASLKFPVPV*SLHVTL
Trigger: AAGTGTCACATGCAGAGACCACACTGGAACTGGAAA...TTTGAGGCTAGCCTGGCTTACAGTGACTTCAAGGTAAGCCATGGCTGCATAGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp AGACACTTTGACTGTGATGCCCTCAAATCGTTGAGTGGAGTAGAACTTGTACTTCGCTTATTGCATGCCTaGAGGCTGGGTTTTAGGGGC +
Preference number: 4 (lower is better)
Translates to: RHFDCDALKSLSGVELVLRLLHA*RLGFRG
Trigger: GCCCCTAAAACCCAGCCTCCAGGCATGCAATAAGCG...AAGTACAAGTTCTACTCCACTCAACGATTTGAGGGCATCACAGTCAAAGTGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp GCTAGCCTCAAATGTATGATCCTCTCGCTCTGCCTCCCAAGTGCTAAGGCTACAATGATGATGGTGTCATaGTCAGGAAAGGTGAAGAAG +
Preference number: 4 (lower is better)
Translates to: ASLKCMILSLCLPSAKATMMMVS*SGKVKK
Trigger: CTTCTTCACCTTTCCTGACCATGACACCATCATCAT...TGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCATACATTTGAGGCTAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp AGACACTTTGACTGTGATGCCCTCAAATCGTTGAGTGGAGTAGAACTTGTACTTTTCTTCGCCTGCCCTTaGTTTCCTCAGGGACATCGG +
Preference number: 4 (lower is better)
Translates to: RHFDCDALKSLSGVELVLFFACP*FPQGHR
Trigger: CCGATGTCCCTGAGGAAACCAAGGGCAGGCGAAGAA...AAGTACAAGTTCTACTCCACTCAACGATTTGAGGGCATCACAGTCAAAGTGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181017.8
CDS-3UTR CCA 90 bp TGTCTTGGCCTAGAATATCTTGACAAGAAGAGAAGCGGGAAGAAGGCCACACCCTTGCTAAAGTGGAAGTaGATTTCTTCGCCTGCCCTT +
Preference number: 4 (lower is better)
Translates to: CLGLEYLDKKRSGKKATPLLKWK*ISSPAL
Trigger: AAGGGCAGGCGAAGAAATCCACTTCCACTTTAGCAA...GGGTGTGGCCTTCTTCCCGCTTCTCTTCTTGTCAAGATATTCTAGGCCAAGACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp GCATCTGCTGTGTGTTTCCATTCAAGATGTTACAGCTCAGATATTCCATTCTGTAGTGTGGCCAAGCCGTaGACTCTCTCCACAGTCCCT +
Preference number: 4 (lower is better)
Translates to: ASAVCFHSRCYSSDIPFCSVAKP*TLSTVP
Trigger: AGGGACTGTGGAGAGAGTCCACGGCTTGGCCACACT...ACAGAATGGAATATCTGAGCTGTAACATCTTGAATGGAAACACACAGCAGATGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181627.8
CDS-3UTR CCA 90 bp ACAGCTCTTCTGGAGATGAGGCTACAGTGGCAGTTGACTGAAGGCTCTCTTCTTAGGTTCGGTGTCAGATaGATCTTCTCTAAGAGTCTG +
Preference number: 4 (lower is better)
Translates to: TALLEMRLQWQLTEGSLLRFGVR*IFSKSL
Trigger: CAGACTCTTAGAGAAGATCCATCTGACACCGAACCT...AAGAAGAGAGCCTTCAGTCAACTGCCACTGTAGCCTCATCTCCAGAAGAGCTGT
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181709.2
CDS-3UTR TCA 90 bp AGTCAGTCCTCCGTCCGTCCCTTTATCAGTTCCAGATCTGCAGTTCTCAAGAACCCTGATAACACATGTTaGTTTTGCGCTGCAGAAGAA +
Preference number: 4 (lower is better)
Translates to: SQSSVRPFISSRSAVLKNPDNTC*FCAAEE
Trigger: TTCTTCTGCAGCGCAAAATCAACATGTGTTATCAGG...GTTCTTGAGAACTGCAGATCTGGAACTGATAAAGGGACGGACGGAGGACTGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR TCA 90 bp AGACACTTTGACTGTGATGCCCTCAAATCGTTGAGTGGAGTAGAACTTGTACTTGGCATTTCTAGGATGTaGGGGATGCTCCTGTCTCAG +
Preference number: 4 (lower is better)
Translates to: RHFDCDALKSLSGVELVLGISRM*GMLLSQ
Trigger: CTGAGACAGGAGCATCCCTCACATCCTAGAAATGCC...AAGTACAAGTTCTACTCCACTCAACGATTTGAGGGCATCACAGTCAAAGTGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181017.8
CDS-3UTR GCA 90 bp CTCATGCACATTCTGGGGTTGTTTTTGCTGCATCAGAAGACAAACACTGGCACTCTCTTCACTCAGCTCTaGCTTGAGCTCATTCACTTG +
Preference number: 4 (lower is better)
Translates to: LMHILGLFLLHQKTNTGTLFTQL*LELIHL
Trigger: CAAGTGAATGAGCTCAAGGCAGAGCTGAGTGAAGAG...AGTGCCAGTGTTTGTCTTCTGATGCAGCAAAAACAACCCCAGAATGTGCATGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR GCA 90 bp AGACACTTTGACTGTGATGCCCTCAAATCGTTGAGTGGAGTAGAACTTGTACTTGTGGATTTCTTCGCCTaGCCTTGGTTTCCTCAGGGA +
Preference number: 4 (lower is better)
Translates to: RHFDCDALKSLSGVELVLVDFFA*PWFPQG
Trigger: TCCCTGAGGAAACCAAGGGCAGGCGAAGAAATCCAC...AAGTACAAGTTCTACTCCACTCAACGATTTGAGGGCATCACAGTCAAAGTGTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181017.8
CDS-3UTR CCA 90 bp TGCTATGCAGCCATGGCTTACCTTGAAGTCACTGTAAGCCAGGCTAGCCTCAAAATCTGTGTCTCTAACTaGCAGATCCTCTGGCATATA +
Preference number: 4 (lower is better)
Translates to: CYAAMAYLEVTVSQASLKICVSN*QILWHI
Trigger: TATATGCCAGAGGATCTGCCAGTTAGAGACACAGAT...TTTGAGGCTAGCCTGGCTTACAGTGACTTCAAGGTAAGCCATGGCTGCATAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp CTCCACAGGGTCCAGATCTATCACCTTGCTAAAGTGGAAGTGGATTTCTTCGCCATCTGTGTCTCTAACTaGCAGATCCTCTGGCATATA +
Preference number: 4 (lower is better)
Translates to: LHRVQIYHLAKVEVDFFAICVSN*QILWHI
Trigger: TATATGCCAGAGGATCTGCCAGTTAGAGACACAGAT...GGCGAAGAAATCCACTTCCACTTTAGCAAGGTGATAGATCTGGACCCTGTGGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
CDS-3UTR CCA 90 bp AGACACTTTGACTGTGATGCCCTCAAATCGTTGAGTGGAGTAGAACTTGTACTTCAGTTCAGCTCCTTCTaGTTCATCCTGCCCAAGTGC +
Preference number: 4 (lower is better)
Translates to: RHFDCDALKSLSGVELVLQFSSF*FILPKC
Trigger: GCACTTGGGCAGGATGAACCAGAAGGAGCTGAACTG...AAGTACAAGTTCTACTCCACTCAACGATTTGAGGGCATCACAGTCAAAGTGTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000180646.8
CDS-3UTR CCA 90 bp AGTCAGTCCTCCGTCCGTCCCTTTATCAGTTCCAGATCTGCAGTTCTCAAGAACATGATGATGGTGTCATaGTCAGGAAAGGTGAAGAAG +
Preference number: 4 (lower is better)
Translates to: SQSSVRPFISSRSAVLKNMMMVS*SGKVKK
Trigger: CTTCTTCACCTTTCCTGACCATGACACCATCATCAT...GTTCTTGAGAACTGCAGATCTGGAACTGATAAAGGGACGGACGGAGGACTGACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp TGTCTTGGCCTAGAATATCTTGACAAGAAGAGAAGCGGGAAGAAGGCCACACCCATCACCTTGCTAAAGTaGAAGTGGATTTCTTCGCCT +
Preference number: 4 (lower is better)
Translates to: CLGLEYLDKKRSGKKATPITLLK*KWISSP
Trigger: AGGCGAAGAAATCCACTTCCACTTTAGCAAGGTGAT...GGGTGTGGCCTTCTTCCCGCTTCTCTTCTTGTCAAGATATTCTAGGCCAAGACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp GTGTCTGGTCTTCAGTGGTTCTGGTTTCTTGCCTCATGCACATTCTGGGGTTGTATCACCTTGCTAAAGTaGAAGTGGATTTCTTCGCCT +
Preference number: 4 (lower is better)
Translates to: VSGLQWFWFLASCTFWGCITLLK*KWISSP
Trigger: AGGCGAAGAAATCCACTTCCACTTTAGCAAGGTGAT...ACAACCCCAGAATGTGCATGAGGCAAGAAACCAGAACCACTGAAGACCAGACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp TGTCTTGGCCTAGAATATCTTGACAAGAAGAGAAGCGGGAAGAAGGCCACACCCCTTGAGCATGTAGCATaGCAAACAAAAACTGCCTTC +
Preference number: 4 (lower is better)
Translates to: CLGLEYLDKKRSGKKATPLEHVA*QTKTAF
Trigger: GAAGGCAGTTTTTGTTTGCCATGCTACATGCTCAAG...GGGTGTGGCCTTCTTCCCGCTTCTCTTCTTGTCAAGATATTCTAGGCCAAGACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp TGTCTTGGCCTAGAATATCTTGACAAGAAGAGAAGCGGGAAGAAGGCCACACCCAAAAAGATTCTCGCTTaGATGCAGCAGAGACATGTC +
Preference number: 4 (lower is better)
Translates to: CLGLEYLDKKRSGKKATPKKILA*MQQRHV
Trigger: GACATGTCTCTGCTGCATCCAAGCGAGAATCTTTTT...GGGTGTGGCCTTCTTCCCGCTTCTCTTCTTGTCAAGATATTCTAGGCCAAGACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111603.10
3UTR CAA 72 bp TTAGCACCTGGGATAAGTCATTCTCGTCTTGAGCTTTaGGTTCACTGGACTCTCTCTGATCTGTCTGTGGGA +
Preference number: 4 (lower is better)
Translates to: LAPGISHSRLEL*VHWTLSDLSVG
Trigger: TCCCACAGACAGATCAGAGAGAGTCCAGTGAACCAAAAGCTCAAGACGAGAATGACTTATCCCAGGTGCTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
CDS-3UTR TCA 90 bp AGACACTTTGACTGTGATGCCCTCAAATCGTTGAGTGGAGTAGAACTTGTACTTCCATTCTTCCGTGAATaGGGCCTCCAGGACATCTTT +
Preference number: 4 (lower is better)
Translates to: RHFDCDALKSLSGVELVLPFFRE*GLQDIF
Trigger: AAAGATGTCCTGGAGGCCTCATTCACGGAAGAATGG...AAGTACAAGTTCTACTCCACTCAACGATTTGAGGGCATCACAGTCAAAGTGTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181017.8
CDS-3UTR TCA 90 bp AGACACTTTGACTGTGATGCCCTCAAATCGTTGAGTGGAGTAGAACTTGTACTTTCCTCTCTCTTGTCCTaGGCTTTTAAGCCACCATCC +
Preference number: 4 (lower is better)
Translates to: RHFDCDALKSLSGVELVLSSLLS*AFKPPS
Trigger: GGATGGTGGCTTAAAAGCTCAGGACAAGAGAGAGGA...AAGTACAAGTTCTACTCCACTCAACGATTTGAGGGCATCACAGTCAAAGTGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181017.8
CDS-3UTR TCA 90 bp AGACACTTTGACTGTGATGCCCTCAAATCGTTGAGTGGAGTAGAACTTGTACTTAGGGCAGAAGGCCAGTaGGACGATTTCAATGCACAT +
Preference number: 4 (lower is better)
Translates to: RHFDCDALKSLSGVELVLRAEGQ*DDFNAH
Trigger: ATGTGCATTGAAATCGTCTCACTGGCCTTCTGCCCT...AAGTACAAGTTCTACTCCACTCAACGATTTGAGGGCATCACAGTCAAAGTGTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181017.8
CDS-3UTR GCA 90 bp AAGTCGTGTCTTGGCCTAGAATATCTTGACAAGAAGAGAAGCGGGAAGAAGGCCTCCTTCAGAGTTATCTaGAAGATAGACACATCTCCC +
Preference number: 4 (lower is better)
Translates to: KSCLGLEYLDKKRSGKKASFRVI*KIDTSP
Trigger: GGGAGATGTGTCTATCTTGCAGATAACTCTGAAGGA...GGCCTTCTTCCCGCTTCTCTTCTTGTCAAGATATTCTAGGCCAAGACACGACTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR GCA 90 bp AGACACTTTGACTGTGATGCCCTCAAATCGTTGAGTGGAGTAGAACTTGTACTTAGTGAGGCTGATGACTaGTATCCAGAGGCTGATGAC +
Preference number: 4 (lower is better)
Translates to: RHFDCDALKSLSGVELVLSEADD*YPEADD
Trigger: GTCATCAGCCTCTGGATAGCAGTCATCAGCCTCACT...AAGTACAAGTTCTACTCCACTCAACGATTTGAGGGCATCACAGTCAAAGTGTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR GCA 90 bp AGTCAGTCCTCCGTCCGTCCCTTTATCAGTTCCAGATCTGCAGTTCTCAAGAACATGTTGATTTTGCGCTaGAGAAGAAGCATATCTCTG +
Preference number: 4 (lower is better)
Translates to: SQSSVRPFISSRSAVLKNMLILR*RRSISL
Trigger: CAGAGATATGCTTCTTCTGCAGCGCAAAATCAACAT...GTTCTTGAGAACTGCAGATCTGGAACTGATAAAGGGACGGACGGAGGACTGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp AGGCAGATCACAGAATTTGTACTCCACATATACCTGCTGGATAGTCTCATCAGAGTTCCTTCACCAACGTaGGCTCTTCATGGAGGTGAA +
Preference number: 4 (lower is better)
Translates to: RQITEFVLHIYLLDSLIRVPSPT*ALHGGE
Trigger: TTCACCTCCATGAAGAGCCCACGTTGGTGAAGGAAC...TCTGATGAGACTATCCAGCAGGTATATGTGGAGTACAAATTCTGTGATCTGCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
CDS-3UTR CCA 90 bp TCTGGTCTTCAGTGGTTCTGGTTTCTTGCCTCATGCACATTCTGGGGTTGTTTTGAGCTTTTGGTTCACTaGACTCTCTCTGATCTGTCT +
Preference number: 4 (lower is better)
Translates to: SGLQWFWFLASCTFWGCFELLVH*TLSDLS
Trigger: AGACAGATCAGAGAGAGTCCAGTGAACCAAAAGCTC...AAAACAACCCCAGAATGTGCATGAGGCAAGAAACCAGAACCACTGAAGACCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp TCTGGTCTTCAGTGGTTCTGGTTTCTTGCCTCATGCACATTCTGGGGTTGTTTTTTTCCAGTTCCAGTGTaGTCTCTGCATGTGACACTT +
Preference number: 4 (lower is better)
Translates to: SGLQWFWFLASCTFWGCFFPVPV*SLHVTL
Trigger: AAGTGTCACATGCAGAGACCACACTGGAACTGGAAA...AAAACAACCCCAGAATGTGCATGAGGCAAGAAACCAGAACCACTGAAGACCAGA
46% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp CTCATGCACATTCTGGGGTTGTTTTTGCTGCATCAGAAGACAAACACTGGCACTATAGGAGCCAGGCTCTaGGTCTTCATCATCAAAAAC +
Preference number: 4 (lower is better)
Translates to: LMHILGLFLLHQKTNTGTIGARL*VFIIKN
Trigger: GTTTTTGATGATGAAGACCCAGAGCCTGGCTCCTAT...AGTGCCAGTGTTTGTCTTCTGATGCAGCAAAAACAACCCCAGAATGTGCATGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp AGACACTTTGACTGTGATGCCCTCAAATCGTTGAGTGGAGTAGAACTTGTACTTTGTTCACAGGATTCCTaGTCTGCTAGGGAGAAGGCA +
Preference number: 4 (lower is better)
Translates to: RHFDCDALKSLSGVELVLCSQDS*SAREKA
Trigger: TGCCTTCTCCCTAGCAGACCAGGAATCCTGTGAACA...AAGTACAAGTTCTACTCCACTCAACGATTTGAGGGCATCACAGTCAAAGTGTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181017.8
CDS-3UTR CCA 90 bp GTCCATATGTGGTGCAGTGCTCAAACACAAATTACCATTGTCTCTTCTGATACAGTCAGGAAGGCCTGGTaGACGTGCAGCTCAAAAAGA +
Preference number: 4 (lower is better)
Translates to: VHMWCSAQTQITIVSSDTVRKAW*TCSSKR
Trigger: TCTTTTTGAGCTGCACGTCCACCAGGCCTTCCTGAC...TGTATCAGAAGAGACAATGGTAATTTGTGTTTGAGCACTGCACCACATATGGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp ACAGCTCTTCTGGAGATGAGGCTACAGTGGCAGTTGACTGAAGGCTCTCTTCTTCATCTTGAGCTTTGTTaGTTGCTTGACGAAAGACTT +
Preference number: 4 (lower is better)
Translates to: TALLEMRLQWQLTEGSLLHLELC*LLDERL
Trigger: AAGTCTTTCGTCAAGCAACCAACAAAGCTCAAGATG...AAGAAGAGAGCCTTCAGTCAACTGCCACTGTAGCCTCATCTCCAGAAGAGCTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181709.2
CDS-3UTR TCA 90 bp CTGGTCTTCAGTGGTTCTGGTTTCTTGCCTCATGCACATTCTGGGGTTGTTTTTAGTCTAGTTGCACTTTaGTGGATCCATTGGACTTCT +
Preference number: 4 (lower is better)
Translates to: LVFSGSGFLPHAHSGVVFSLVAL*WIHWTS
Trigger: AGAAGTCCAATGGATCCATCAAAGTGCAACTAGACT...AAAAACAACCCCAGAATGTGCATGAGGCAAGAAACCAGAACCACTGAAGACCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR TCA 90 bp GTCCATATGTGGTGCAGTGCTCAAACACAAATTACCATTGTCTCTTCTGATACACCATTCTTCCGTGAATaGGGCCTCCAGGACATCTTT +
Preference number: 4 (lower is better)
Translates to: VHMWCSAQTQITIVSSDTPFFRE*GLQDIF
Trigger: AAAGATGTCCTGGAGGCCTCATTCACGGAAGAATGG...TGTATCAGAAGAGACAATGGTAATTTGTGTTTGAGCACTGCACCACATATGGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR TCA 90 bp GTCCATATGTGGTGCAGTGCTCAAACACAAATTACCATTGTCTCTTCTGATACAAGGGCAGAAGGCCAGTaGGACGATTTCAATGCACAT +
Preference number: 4 (lower is better)
Translates to: VHMWCSAQTQITIVSSDTRAEGQ*DDFNAH
Trigger: ATGTGCATTGAAATCGTCTCACTGGCCTTCTGCCCT...TGTATCAGAAGAGACAATGGTAATTTGTGTTTGAGCACTGCACCACATATGGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR TCA 90 bp AGACACTTTGACTGTGATGCCCTCAAATCGTTGAGTGGAGTAGAACTTGTACTTCCCTCATCAGAATCTTaGGCATGTAGCATGGCAAAC +
Preference number: 4 (lower is better)
Translates to: RHFDCDALKSLSGVELVLPSSES*ACSMAN
Trigger: GTTTGCCATGCTACATGCTCAAGATTCTGATGAGGG...AAGTACAAGTTCTACTCCACTCAACGATTTGAGGGCATCACAGTCAAAGTGTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181017.8
CDS-3UTR GCA 90 bp GTCCATATGTGGTGCAGTGCTCAAACACAAATTACCATTGTCTCTTCTGATACAAGCTCACAGCCTTCTTaGTCTCTTCACTCAGCTCTG +
Preference number: 4 (lower is better)
Translates to: VHMWCSAQTQITIVSSDTSSQPS*SLHSAL
Trigger: CAGAGCTGAGTGAAGAGAGCAAGAAGGCTGTGAGCT...TGTATCAGAAGAGACAATGGTAATTTGTGTTTGAGCACTGCACCACATATGGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR GCA 90 bp TCTGGTCTTCAGTGGTTCTGGTTTCTTGCCTCATGCACATTCTGGGGTTGTTTTGTGAGACGATTTCAATaGACATCTTCTCTGAATCGG +
Preference number: 4 (lower is better)
Translates to: SGLQWFWFLASCTFWGCFVRRFQ*TSSLNR
Trigger: CCGATTCAGAGAAGATGTGCATTGAAATCGTCTCAC...AAAACAACCCCAGAATGTGCATGAGGCAAGAAACCAGAACCACTGAAGACCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR GCA 90 bp AGACACTTTGACTGTGATGCCCTCAAATCGTTGAGTGGAGTAGAACTTGTACTTATGGCAAACAAAAACTaGCTTCGGCTTTGGTGCTCC +
Preference number: 4 (lower is better)
Translates to: RHFDCDALKSLSGVELVLMANKN*LRLWCS
Trigger: GGAGCACCAAAGCCGAAGGCAGTTTTTGTTTGCCAT...AAGTACAAGTTCTACTCCACTCAACGATTTGAGGGCATCACAGTCAAAGTGTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181017.8
CDS-3UTR CCA 90 bp TCTGGTCTTCAGTGGTTCTGGTTTCTTGCCTCATGCACATTCTGGGGTTGTTTTATCTGTGTCTCTAACTaGCAGATCCTCTGGCATATA +
Preference number: 4 (lower is better)
Translates to: SGLQWFWFLASCTFWGCFICVSN*QILWHI
Trigger: TATATGCCAGAGGATCTGCCAGTTAGAGACACAGAT...AAAACAACCCCAGAATGTGCATGAGGCAAGAAACCAGAACCACTGAAGACCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp GTCCATATGTGGTGCAGTGCTCAAACACAAATTACCATTGTCTCTTCTGATACAGTTCCTTCACCAACGTaGGCTCTTCATGGAGGTGAA +
Preference number: 4 (lower is better)
Translates to: VHMWCSAQTQITIVSSDTVPSPT*ALHGGE
Trigger: TTCACCTCCATGAAGAGCCCACGTTGGTGAAGGAAC...TGTATCAGAAGAGACAATGGTAATTTGTGTTTGAGCACTGCACCACATATGGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp AAGTCGTGTCTTGGCCTAGAATATCTTGACAAGAAGAGAAGCGGGAAGAAGGCCCAGGCTTTTCAACTTTaGATGTTTTCTCAGGAGATC +
Preference number: 4 (lower is better)
Translates to: KSCLGLEYLDKKRSGKKAQAFQL*MFSQEI
Trigger: GATCTCCTGAGAAAACATCCAAAGTTGAAAAGCCTG...GGCCTTCTTCCCGCTTCTCTTCTTGTCAAGATATTCTAGGCCAAGACACGACTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp TCTGGTCTTCAGTGGTTCTGGTTTCTTGCCTCATGCACATTCTGGGGTTGTTTTTCCACATATACCTGCTaGATAGTCTCATCAGACATG +
Preference number: 4 (lower is better)
Translates to: SGLQWFWFLASCTFWGCFSTYTC*IVSSDM
Trigger: CATGTCTGATGAGACTATCCAGCAGGTATATGTGGA...AAAACAACCCCAGAATGTGCATGAGGCAAGAAACCAGAACCACTGAAGACCAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp CTCATGCACATTCTGGGGTTGTTTTTGCTGCATCAGAAGACAAACACTGGCACTTCCACATATACCTGCTaGATAGTCTCATCAGACATG +
Preference number: 4 (lower is better)
Translates to: LMHILGLFLLHQKTNTGTSTYTC*IVSSDM
Trigger: CATGTCTGATGAGACTATCCAGCAGGTATATGTGGA...AGTGCCAGTGTTTGTCTTCTGATGCAGCAAAAACAACCCCAGAATGTGCATGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp AGACACTTTGACTGTGATGCCCTCAAATCGTTGAGTGGAGTAGAACTTGTACTTTTCAGCCTTCCAATTTaGATGGCCTGGTTTCTAGGG +
Preference number: 4 (lower is better)
Translates to: RHFDCDALKSLSGVELVLFSLPI*MAWFLG
Trigger: CCCTAGAAACCAGGCCATCCAAATTGGAAGGCTGAA...AAGTACAAGTTCTACTCCACTCAACGATTTGAGGGCATCACAGTCAAAGTGTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181017.8
ENSMUST00000181736.2
CDS-3UTR TCA 90 bp AGACACTTTGACTGTGATGCCCTCAAATCGTTGAGTGGAGTAGAACTTGTACTTTTCAGCTTTCCATCTTaGGCTGCTTTGTTGGTTGCT +
Preference number: 4 (lower is better)
Translates to: RHFDCDALKSLSGVELVLFSFPS*AALLVA
Trigger: AGCAACCAACAAAGCAGCTCAAGATGGAAAGCTGAA...AAGTACAAGTTCTACTCCACTCAACGATTTGAGGGCATCACAGTCAAAGTGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR GCA 90 bp AAACTTGTCTCTTATGACCATTTCTTTGCAGTTTCTGAAGTCAAGTCAAGTTCAGGAAGCTCGAAGCTCTaGAGCCTTCTGAGTGCACTC +
Preference number: 4 (lower is better)
Translates to: KLVSYDHFFAVSEVKSSSGSSKL*SLLSAL
Trigger: GAGTGCACTCAGAAGGCTGCAGAGCTTCGAGCTTCC...TGAACTTGACTTGACTTCAGAAACTGCAAAGAAATGGTCATAAGAGACAAGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000180646.8
CDS-3UTR GCA 90 bp TGTCTTGGCCTAGAATATCTTGACAAGAAGAGAAGCGGGAAGAAGGCCACACCCACAATCTCTAGTTCTTaGTCTAGGATATCTTTTCCA +
Preference number: 4 (lower is better)
Translates to: CLGLEYLDKKRSGKKATPTISSS*SRISFP
Trigger: TGGAAAAGATATCCTAGAGCAAGAACTAGAGATTGT...GGGTGTGGCCTTCTTCCCGCTTCTCTTCTTGTCAAGATATTCTAGGCCAAGACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
CDS-3UTR GCA 90 bp GTGTCTGGTCTTCAGTGGTTCTGGTTTCTTGCCTCATGCACATTCTGGGGTTGTACAATCTCTAGTTCTTaGTCTAGGATATCTTTTCCA +
Preference number: 4 (lower is better)
Translates to: VSGLQWFWFLASCTFWGCTISSS*SRISFP
Trigger: TGGAAAAGATATCCTAGAGCAAGAACTAGAGATTGT...ACAACCCCAGAATGTGCATGAGGCAAGAAACCAGAACCACTGAAGACCAGACAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
CDS-3UTR CCA 90 bp AATGATGATGGTGTCATGGTCAGGAAAGGTGAAGAAGCGGTACATGACATACGGCAGGCTTTTCAACTTTaGATGTTTTCTCAGGAGATC +
Preference number: 4 (lower is better)
Translates to: NDDGVMVRKGEEAVHDIRQAFQL*MFSQEI
Trigger: GATCTCCTGAGAAAACATCCAAAGTTGAAAAGCCTG...CCGTATGTCATGTACCGCTTCTTCACCTTTCCTGACCATGACACCATCATCATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
CDS-3UTR CCA 90 bp AGACACTTTGACTGTGATGCCCTCAAATCGTTGAGTGGAGTAGAACTTGTACTTTTGAGCTCATTCACTTaGCTGAGGAAGGCATTATGG +
Preference number: 4 (lower is better)
Translates to: RHFDCDALKSLSGVELVLLSSFT*LRKALW
Trigger: CCATAATGCCTTCCTCAGCCAAGTGAATGAGCTCAA...AAGTACAAGTTCTACTCCACTCAACGATTTGAGGGCATCACAGTCAAAGTGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp GTCCATATGTGGTGCAGTGCTCAAACACAAATTACCATTGTCTCTTCTGATACATGGATTGCTGCTGGCTaGAATGATGATGGTGTCATG +
Preference number: 4 (lower is better)
Translates to: VHMWCSAQTQITIVSSDTWIAAG*NDDGVM
Trigger: CATGACACCATCATCATTCCAGCCAGCAGCAATCCA...TGTATCAGAAGAGACAATGGTAATTTGTGTTTGAGCACTGCACCACATATGGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp AGACACTTTGACTGTGATGCCCTCAAATCGTTGAGTGGAGTAGAACTTGTACTTATAGGAGCCAGGCTCTaGGTCTTCATCATCAAAAAC +
Preference number: 4 (lower is better)
Translates to: RHFDCDALKSLSGVELVLIGARL*VFIIKN
Trigger: GTTTTTGATGATGAAGACCCAGAGCCTGGCTCCTAT...AAGTACAAGTTCTACTCCACTCAACGATTTGAGGGCATCACAGTCAAAGTGTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp AGACACTTTGACTGTGATGCCCTCAAATCGTTGAGTGGAGTAGAACTTGTACTTTTGCTAAAGTGGAAGTaGATTTCTTCGCCTGCCCTT +
Preference number: 4 (lower is better)
Translates to: RHFDCDALKSLSGVELVLLLKWK*ISSPAL
Trigger: AAGGGCAGGCGAAGAAATCCACTTCCACTTTAGCAA...AAGTACAAGTTCTACTCCACTCAACGATTTGAGGGCATCACAGTCAAAGTGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181017.8
CDS-3UTR GCA 90 bp AAACTTGTCTCTTATGACCATTTCTTTGCAGTTTCTGAAGTCAAGTCAAGTTCACTGCAGCCTTCTGAGTaGACTCCTCTGAGCTTCTCT +
Preference number: 4 (lower is better)
Translates to: KLVSYDHFFAVSEVKSSSLQPSE*TPLSFS
Trigger: AGAGAAGCTCAGAGGAGTGCACTCAGAAGGCTGCAG...TGAACTTGACTTGACTTCAGAAACTGCAAAGAAATGGTCATAAGAGACAAGTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000180646.8
CDS-3UTR GCA 90 bp ATCTGCTGTGTGTTTCCATTCAAGATGTTACAGCTCAGATATTCCATTCTGTTCCTTTCTTTCGCTTATTaGATGCCTGGAGGCTGGGTT +
Preference number: 4 (lower is better)
Translates to: ICCVFPFKMLQLRYSILFLSFAY*MPGGWV
Trigger: AACCCAGCCTCCAGGCATGCAATAAGCGAAAGAAAG...GAACAGAATGGAATATCTGAGCTGTAACATCTTGAATGGAAACACACAGCAGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181627.8
CDS-3UTR GCA 90 bp AGACACTTTGACTGTGATGCCCTCAAATCGTTGAGTGGAGTAGAACTTGTACTTGTGAGACGATTTCAATaGACATCTTCTCTGAATCGG +
Preference number: 4 (lower is better)
Translates to: RHFDCDALKSLSGVELVLVRRFQ*TSSLNR
Trigger: CCGATTCAGAGAAGATGTGCATTGAAATCGTCTCAC...AAGTACAAGTTCTACTCCACTCAACGATTTGAGGGCATCACAGTCAAAGTGTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181017.8
CDS-3UTR GCA 90 bp GCTGTGTGTTTCCATTCAAGATGTTACAGCTCAGATATTCCATTCTGTTCTTGTTTGAAATCACCTCATTaGTCTGGACCTTCCGAGCTC +
Preference number: 4 (lower is better)
Translates to: AVCFHSRCYSSDIPFCSCLKSPH*SGPSEL
Trigger: GAGCTCGGAAGGTCCAGAGCAATGAGGTGATTTCAA...ACAAGAACAGAATGGAATATCTGAGCTGTAACATCTTGAATGGAAACACACAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181627.8
CDS-3UTR CCA 90 bp GTCCATATGTGGTGCAGTGCTCAAACACAAATTACCATTGTCTCTTCTGATACAGAGCTTTTGGTTCACTaGACTCTCTCTGATCTGTCT +
Preference number: 4 (lower is better)
Translates to: VHMWCSAQTQITIVSSDTELLVH*TLSDLS
Trigger: AGACAGATCAGAGAGAGTCCAGTGAACCAAAAGCTC...TGTATCAGAAGAGACAATGGTAATTTGTGTTTGAGCACTGCACCACATATGGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp AGACACTTTGACTGTGATGCCCTCAAATCGTTGAGTGGAGTAGAACTTGTACTTTCCACATATACCTGCTaGATAGTCTCATCAGACATG +
Preference number: 4 (lower is better)
Translates to: RHFDCDALKSLSGVELVLSTYTC*IVSSDM
Trigger: CATGTCTGATGAGACTATCCAGCAGGTATATGTGGA...AAGTACAAGTTCTACTCCACTCAACGATTTGAGGGCATCACAGTCAAAGTGTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181017.8
CDS-3UTR CCA 90 bp AGACACTTTGACTGTGATGCCCTCAAATCGTTGAGTGGAGTAGAACTTGTACTTATCACCTTGCTAAAGTaGAAGTGGATTTCTTCGCCT +
Preference number: 4 (lower is better)
Translates to: RHFDCDALKSLSGVELVLITLLK*KWISSP
Trigger: AGGCGAAGAAATCCACTTCCACTTTAGCAAGGTGAT...AAGTACAAGTTCTACTCCACTCAACGATTTGAGGGCATCACAGTCAAAGTGTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181017.8
CDS-3UTR CCA 90 bp AGACACTTTGACTGTGATGCCCTCAAATCGTTGAGTGGAGTAGAACTTGTACTTCTTGAGCATGTAGCATaGCAAACAAAAACTGCCTTC +
Preference number: 4 (lower is better)
Translates to: RHFDCDALKSLSGVELVLLEHVA*QTKTAF
Trigger: GAAGGCAGTTTTTGTTTGCCATGCTACATGCTCAAG...AAGTACAAGTTCTACTCCACTCAACGATTTGAGGGCATCACAGTCAAAGTGTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181017.8
CDS-3UTR GCA 90 bp AGACACTTTGACTGTGATGCCCTCAAATCGTTGAGTGGAGTAGAACTTGTACTTCCACAGTTCAAGGTATaGATAGCCTATATCTTGACA +
Preference number: 4 (lower is better)
Translates to: RHFDCDALKSLSGVELVLPQFKV*IAYILT
Trigger: TGTCAAGATATAGGCTATGCATACCTTGAACTGTGG...AAGTACAAGTTCTACTCCACTCAACGATTTGAGGGCATCACAGTCAAAGTGTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181017.8
ENSMUST00000181736.2
CDS-3UTR CCA 90 bp AAACTTGTCTCTTATGACCATTTCTTTGCAGTTTCTGAAGTCAAGTCAAGTTCAGAGATGAGGCTACAGTaGCAGTTGACTGAAGGCTCT +
Preference number: 4 (lower is better)
Translates to: KLVSYDHFFAVSEVKSSSEMRLQ*QLTEGS
Trigger: AGAGCCTTCAGTCAACTGCCACTGTAGCCTCATCTC...TGAACTTGACTTGACTTCAGAAACTGCAAAGAAATGGTCATAAGAGACAAGTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp AAACTTGTCTCTTATGACCATTTCTTTGCAGTTTCTGAAGTCAAGTCAAGTTCACCAGTAGCAAGGACATaGTATTCACTAGCCATGGCC +
Preference number: 4 (lower is better)
Translates to: KLVSYDHFFAVSEVKSSSPVART*YSLAMA
Trigger: GGCCATGGCTAGTGAATACCATGTCCTTGCTACTGG...TGAACTTGACTTGACTTCAGAAACTGCAAAGAAATGGTCATAAGAGACAAGTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111603.10
CDS-3UTR GCA 90 bp AAACTTGTCTCTTATGACCATTTCTTTGCAGTTTCTGAAGTCAAGTCAAGTTCACTCTTCACTCAGCTCTaGCTTGAGCTCATTCACTTG +
Preference number: 4 (lower is better)
Translates to: KLVSYDHFFAVSEVKSSSLFTQL*LELIHL
Trigger: CAAGTGAATGAGCTCAAGGCAGAGCTGAGTGAAGAG...TGAACTTGACTTGACTTCAGAAACTGCAAAGAAATGGTCATAAGAGACAAGTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CCA 90 bp AAACTTGTCTCTTATGACCATTTCTTTGCAGTTTCTGAAGTCAAGTCAAGTTCAAGCTCGCTTAGCACCTaGGATAAGTCATTCTCGTCT +
Preference number: 4 (lower is better)
Translates to: KLVSYDHFFAVSEVKSSSSSLST*DKSFSS
Trigger: AGACGAGAATGACTTATCCCAGGTGCTAAGCGAGCT...TGAACTTGACTTGACTTCAGAAACTGCAAAGAAATGGTCATAAGAGACAAGTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR TCA 90 bp AAACTTGTCTCTTATGACCATTTCTTTGCAGTTTCTGAAGTCAAGTCAAGTTCATTCAGCTTTCCATCTTaGGCTGCTTTGTTGGTTGCT +
Preference number: 4 (lower is better)
Translates to: KLVSYDHFFAVSEVKSSSFSFPS*AALLVA
Trigger: AGCAACCAACAAAGCAGCTCAAGATGGAAAGCTGAA...TGAACTTGACTTGACTTCAGAAACTGCAAAGAAATGGTCATAAGAGACAAGTTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR TCA 90 bp GCATCTGCTGTGTGTTTCCATTCAAGATGTTACAGCTCAGATATTCCATTCTGTTTCAGAGTTATCTTTTaGAGCAAGTCTTCATATGCC +
Preference number: 4 (lower is better)
Translates to: ASAVCFHSRCYSSDIPFCFRVIF*SKSSYA
Trigger: GGCATATGAAGACTTGCTTCAAAAGATAACTCTGAA...ACAGAATGGAATATCTGAGCTGTAACATCTTGAATGGAAACACACAGCAGATGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
CDS-3UTR GCA 90 bp AGACACTTTGACTGTGATGCCCTCAAATCGTTGAGTGGAGTAGAACTTGTACTTACAATCTCTAGTTCTTaGTCTAGGATATCTTTTCCA +
Preference number: 4 (lower is better)
Translates to: RHFDCDALKSLSGVELVLTISSS*SRISFP
Trigger: TGGAAAAGATATCCTAGAGCAAGAACTAGAGATTGT...AAGTACAAGTTCTACTCCACTCAACGATTTGAGGGCATCACAGTCAAAGTGTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181017.8
ENSMUST00000181736.2
CDS-3UTR CCA 90 bp AAACTTGTCTCTTATGACCATTTCTTTGCAGTTTCTGAAGTCAAGTCAAGTTCACTTGAGCATGTAGCATaGCAAACAAAAACTGCCTTC +
Preference number: 4 (lower is better)
Translates to: KLVSYDHFFAVSEVKSSSLEHVA*QTKTAF
Trigger: GAAGGCAGTTTTTGTTTGCCATGCTACATGCTCAAG...TGAACTTGACTTGACTTCAGAAACTGCAAAGAAATGGTCATAAGAGACAAGTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS CCA 90 bp ATCGTCACCTCTGTGGGCTGCCAGGGGCTCCAGACACAGCGACGGTaGCAGAGTGCCATACGCGACATCTTTGAGCTGCTCTTCCAGCTG +
Preference number: 5 (lower is better)
Translates to: IVTSVGCQGLQTQRR*QSAIRDIFELLFQL
Trigger: CAGCTGGAAGAGCAGCTCAAAGATGTCGCGTATGGCACTCTGCCACCGTCGCTGTGTCTGGAGCCCCTGGCAGCCCACAGAGGTGACGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181401.8
CDS CCA 90 bp ATCGTCACCTCTGTGGGCTGCCAGGGGCTCCAGACACAGCGACGGTaGCAGAGTGCCATACGCGACATCTTTGAGCTGCTCAGATGTTGG +
Preference number: 5 (lower is better)
Translates to: IVTSVGCQGLQTQRR*QSAIRDIFELLRCW
Trigger: CCAACATCTGAGCAGCTCAAAGATGTCGCGTATGGCACTCTGCCACCGTCGCTGTGTCTGGAGCCCCTGGCAGCCCACAGAGGTGACGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp GTGGGAGTAGAGTGGGCTGAGCAGCCAGTTCACACAGCTCTTCTGGAGATGAGGCAGCAGTGGACAGACTaGCGGTGGGAGCTGCTTCCC +
Preference number: 5 (lower is better)
Translates to: VGVEWAEQPVHTALLEMRQQWTD*RWELLP
Trigger: GGGAAGCAGCTCCCACCGCAAGTCTGTCCACTGCTG...CCTCATCTCCAGAAGAGCTGTGTGAACTGGCTGCTCAGCCCACTCTACTCCCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181709.2
CDS-3UTR CAA 90 bp GACTGTGACTTGGCTGAGCTGGGCTGGTGTCTGGTCTTCAGTGGTTCTGGTTTCCAGCGCAGTGCCCATTaGGTCCAGCAGTGGACAGAC +
Preference number: 5 (lower is better)
Translates to: DCDLAELGWCLVFSGSGFQRSAH*VQQWTD
Trigger: GTCTGTCCACTGCTGGACCAAATGGGCACTGCGCTG...GAAACCAGAACCACTGAAGACCAGACACCAGCCCAGCTCAGCCAAGTCACAGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp GGGCTGCCTTCCCAGCCGTCGACTCCGGAGGCCGCAGCACCTGGTGATCTCAACTCAGGCTTTTCAACTTaGGATGTTTTCTCAGGAGAT +
Preference number: 5 (lower is better)
Translates to: GLPSQPSTPEAAAPGDLNSGFST*DVFSGD
Trigger: ATCTCCTGAGAAAACATCCAAAGTTGAAAAGCCTGA...GTTGAGATCACCAGGTGCTGCGGCCTCCGGAGTCGACGGCTGGGAAGGCAGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
CDS-3UTR CAA 90 bp GCTAGCCTCAAATGTATGATCCTCTCGCTCTGCCTCCCAAGTGCTAAGGCTACACAGCAGTGGACAGACTaGCGGTGGGAGCTGCTTCCC +
Preference number: 5 (lower is better)
Translates to: ASLKCMILSLCLPSAKATQQWTD*RWELLP
Trigger: GGGAAGCAGCTCCCACCGCAAGTCTGTCCACTGCTG...TGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCATACATTTGAGGCTAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp GAGCAGCCAGTTCACACAGCTCTTCTGGAGATGAGGCTACAGTGGCAGTTGACTCAGCGCAGTGCCCATTaGGTCCAGCAGTGGACAGAC +
Preference number: 5 (lower is better)
Translates to: EQPVHTALLEMRLQWQLTQRSAH*VQQWTD
Trigger: GTCTGTCCACTGCTGGACCAAATGGGCACTGCGCTG...AGTCAACTGCCACTGTAGCCTCATCTCCAGAAGAGCTGTGTGAACTGGCTGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181709.2
CDS-3UTR CAA 90 bp ATGATCCTCTCGCTCTGCCTCCCAAGTGCTAAGGCTACAGGCTTGAGTCACTGTGAGGGCAGCAGCTGCTaGGAGGGAAACCTTCAGCCT +
Preference number: 5 (lower is better)
Translates to: MILSLCLPSAKATGLSHCEGSSC*EGNLQP
Trigger: AGGCTGAAGGTTTCCCTCCAAGCAGCTGCTGCCCTC...ACAGTGACTCAAGCCTGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
CDS GCA 90 bp GATTCCTGGTCTGCTAGGGAGAAGGCATTTCTAGGATGTGAGGGATaGTCCTGTCTCAGTGCTGAACGGGGTGATGGCGGTTCCTCTCTC +
Preference number: 5 (lower is better)
Translates to: DSWSAREKAFLGCEG*SCLSAERGDGGSSL
Trigger: GAGAGAGGAACCGCCATCACCCCGTTCAGCACTGAGACAGGAGCATCCCTCACATCCTAGAAATGCCTTCTCCCTAGCAGACCAGGAATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181017.8
ENSMUST00000181401.8
CDS-3UTR CAA 90 bp TGCTATGCAGCCATGGCTTACCTTGAAGTCACTGTAAGCCAGGCTAGCCTCAAACAGCAGTGGACAGACTaGCGGTGGGAGCTGCTTCCC +
Preference number: 5 (lower is better)
Translates to: CYAAMAYLEVTVSQASLKQQWTD*RWELLP
Trigger: GGGAAGCAGCTCCCACCGCAAGTCTGTCCACTGCTG...TTTGAGGCTAGCCTGGCTTACAGTGACTTCAAGGTAAGCCATGGCTGCATAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp GCTAGCCTCAAATGTATGATCCTCTCGCTCTGCCTCCCAAGTGCTAAGGCTACAGAGGGCAGCAGCTGCTaGGAGGGAAACCTTCAGCCT +
Preference number: 5 (lower is better)
Translates to: ASLKCMILSLCLPSAKATEGSSC*EGNLQP
Trigger: AGGCTGAAGGTTTCCCTCCAAGCAGCTGCTGCCCTC...TGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCATACATTTGAGGCTAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
CDS TCA 90 bp GCTCCTTCCAGCTGTTTGATGCGGCTGTTCTTGAAGTCCAGGAGGTaGTTCAGCCGCTCCAGTTTCTCTTCGTGGTCCCTGTTTTCCCTG +
Preference number: 5 (lower is better)
Translates to: APSSCLMRLFLKSRR*FSRSSFSSWSLFSL
Trigger: CAGGGAAAACAGGGACCACGAAGAGAAACTGGAGCGGCTGAATCACCTCCTGGACTTCAAGAACAGCCGCATCAAACAGCTGGAAGGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111600.11
CDS-3UTR CAA 90 bp GAGCAGCCAGTTCACACAGCTCTTCTGGAGATGAGGCTACAGTGGCAGTTGACTTTGAACTCGTGTCAGTaGGGCTTCTGTGGCTGCCAG +
Preference number: 5 (lower is better)
Translates to: EQPVHTALLEMRLQWQLTLNSCQ*GFCGCQ
Trigger: CTGGCAGCCACAGAAGCCCAACTGACACGAGTTCAA...AGTCAACTGCCACTGTAGCCTCATCTCCAGAAGAGCTGTGTGAACTGGCTGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000180646.8
ENSMUST00000181709.2
CDS-3UTR CAA 90 bp GCTGAGCAGCCAGTTCACACAGCTCTTCTGGAGATGAGGCTACAGTGGCAGTTGTCACTCAGCTCTGCCTaGAGCTCATTCACTTGGCTG +
Preference number: 5 (lower is better)
Translates to: AEQPVHTALLEMRLQWQLSLSSA*SSFTWL
Trigger: CAGCCAAGTGAATGAGCTCAAGGCAGAGCTGAGTGA...CAACTGCCACTGTAGCCTCATCTCCAGAAGAGCTGTGTGAACTGGCTGCTCAGC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181709.2
CDS-3UTR CAA 90 bp GTGTCTGGTCTTCAGTGGTTCTGGTTTCTTGCCTCATGCACATTCTGGGGTTGTGAGGGCAGCAGCTGCTaGGAGGGAAACCTTCAGCCT +
Preference number: 5 (lower is better)
Translates to: VSGLQWFWFLASCTFWGCEGSSC*EGNLQP
Trigger: AGGCTGAAGGTTTCCCTCCAAGCAGCTGCTGCCCTC...ACAACCCCAGAATGTGCATGAGGCAAGAAACCAGAACCACTGAAGACCAGACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181736.2
CDS TCA 90 bp AATCACCTCATTGCTCTGGACCTTCCGAGCTCCAAGCACACTGACTaGCAGGTAGGCCTGGGCTTTCTTTCGCTTATTGCATGCCTGGAG +
Preference number: 5 (lower is better)
Translates to: NHLIALDLPSSKHTD*QVGLGFLSLIACLE
Trigger: CTCCAGGCATGCAATAAGCGAAAGAAAGCCCAGGCCTACCTGTCAGTCAGTGTGCTTGGAGCTCGGAAGGTCCAGAGCAATGAGGTGATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181627.8
CDS CCA 90 bp CCAGAGTCTGTGAGATTGAAATCACCAGCGAGTGTGGCCAAGCCGTaGACTCTCTCCACAGTCCCTAGCACCTTGTCAAGTGAGATCCAT +
Preference number: 5 (lower is better)
Translates to: PESVRLKSPASVAKP*TLSTVPSTLSSEIH
Trigger: ATGGATCTCACTTGACAAGGTGCTAGGGACTGTGGAGAGAGTCCACGGCTTGGCCACACTCGCTGGTGATTTCAATCTCACAGACTCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180513.2
CDS-3UTR CAA 90 bp TGCAGTTCTCAAGAACGTCCTTGGGCTCTGCTGATGACTGTGACTTGGCTGAGCGCTTTCTTTCGCTTATaGCATGCCTGGAGGCTGGGT +
Preference number: 5 (lower is better)
Translates to: CSSQERPWALLMTVTWLSAFFRL*HAWRLG
Trigger: ACCCAGCCTCCAGGCATGCAATAAGCGAAAGAAAGC...GCTCAGCCAAGTCACAGTCATCAGCAGAGCCCAAGGACGTTCTTGAGAACTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp AGTCAGTCCTCCGTCCGTCCCTTTATCAGTTCCAGATCTGCAGTTCTCAAGAACCCATCCTCGGCCTTCTaGAGCCCTGAGAACTTCCAC +
Preference number: 5 (lower is better)
Translates to: SQSSVRPFISSRSAVLKNPSSAF*SPENFH
Trigger: GTGGAAGTTCTCAGGGCTCAAGAAGGCCGAGGATGG...GTTCTTGAGAACTGCAGATCTGGAACTGATAAAGGGACGGACGGAGGACTGACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp TGCTATGCAGCCATGGCTTACCTTGAAGTCACTGTAAGCCAGGCTAGCCTCAAACCATCCTCGGCCTTCTaGAGCCCTGAGAACTTCCAC +
Preference number: 5 (lower is better)
Translates to: CYAAMAYLEVTVSQASLKPSSAF*SPENFH
Trigger: GTGGAAGTTCTCAGGGCTCAAGAAGGCCGAGGATGG...TTTGAGGCTAGCCTGGCTTACAGTGACTTCAAGGTAAGCCATGGCTGCATAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp AGTCAGTCCTCCGTCCGTCCCTTTATCAGTTCCAGATCTGCAGTTCTCAAGAACGCAGAAAGTGGTAGGTaGGGTGTCGCCAGCCTGTGT +
Preference number: 5 (lower is better)
Translates to: SQSSVRPFISSRSAVLKNAESGR*GVASLC
Trigger: ACACAGGCTGGCGACACCCAACCTACCACTTTCTGC...GTTCTTGAGAACTGCAGATCTGGAACTGATAAAGGGACGGACGGAGGACTGACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111603.10
CDS TCA 90 bp ATACCTTCCAGCTGTTTGATGCGGCTGTTCTTGAAGTCCAGGAGGTaGTTCAGCCGCTCCAGTTTCTCTTCGTGGTCCCTGTTTTCCCTG +
Preference number: 5 (lower is better)
Translates to: IPSSCLMRLFLKSRR*FSRSSFSSWSLFSL
Trigger: CAGGGAAAACAGGGACCACGAAGAGAAACTGGAGCGGCTGAATCACCTCCTGGACTTCAAGAACAGCCGCATCAAACAGCTGGAAGGTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp ACAGCTCTTCTGGAGATGAGGCTACAGTGGCAGTTGACTGAAGGCTCTCTTCTTTTGAACTCGTGTCAGTaGGGCTTCTGTGGCTGCCAG +
Preference number: 5 (lower is better)
Translates to: TALLEMRLQWQLTEGSLLLNSCQ*GFCGCQ
Trigger: CTGGCAGCCACAGAAGCCCAACTGACACGAGTTCAA...AAGAAGAGAGCCTTCAGTCAACTGCCACTGTAGCCTCATCTCCAGAAGAGCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000180646.8
ENSMUST00000181709.2
CDS-3UTR CAA 90 bp TCTGGTCTTCAGTGGTTCTGGTTTCTTGCCTCATGCACATTCTGGGGTTGTTTTCAGCGCAGTGCCCATTaGGTCCAGCAGTGGACAGAC +
Preference number: 5 (lower is better)
Translates to: SGLQWFWFLASCTFWGCFQRSAH*VQQWTD
Trigger: GTCTGTCCACTGCTGGACCAAATGGGCACTGCGCTG...AAAACAACCCCAGAATGTGCATGAGGCAAGAAACCAGAACCACTGAAGACCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp ATGATCCTCTCGCTCTGCCTCCCAAGTGCTAAGGCTACAGGCTTGAGTCACTGTTTTCCCTGTCAGCTTTaGTCAGTGTTGCCTCCAGCT +
Preference number: 5 (lower is better)
Translates to: MILSLCLPSAKATGLSHCFPCQL*SVLPPA
Trigger: AGCTGGAGGCAACACTGACAAAAGCTGACAGGGAAA...ACAGTGACTCAAGCCTGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS TCA 90 bp TTGAAATCACCTCATTGCTCTGGACCTTCCGAGCTCCAAGCACACTaGCTGACAGGTAGGCCTGGGCTTTCTTTCGCTTATTGCATGCCT +
Preference number: 5 (lower is better)
Translates to: LKSPHCSGPSELQAH*LTGRPGLSFAYCMP
Trigger: AGGCATGCAATAAGCGAAAGAAAGCCCAGGCCTACCTGTCAGTCAGTGTGCTTGGAGCTCGGAAGGTCCAGAGCAATGAGGTGATTTCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181627.8
CDS GCA 90 bp GGTTATTTCGATTCTGGTGTTCTTGTCCGCCACATAGTCTTTAAATaGGGGAGGGGCTGTATGGCTGCGCCTGTCATTTGGCCCAGCTAT +
Preference number: 5 (lower is better)
Translates to: GYFDSGVLVRHIVFK*GRGCMAAPVIWPSY
Trigger: ATAGCTGGGCCAAATGACAGGCGCAGCCATACAGCCCCTCCCGCATTTAAAGACTATGTGGCGGACAAGAACACCAGAATCGAAATAACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000180646.8
ENSMUST00000181401.8
CDS CCA 90 bp TCGCTGCACGTTCGTCCTTCGCCTTCTGTTTTTATCTCGTTGCTTTaGAGAAGGTTCCTTCACCAACGTGGGCTCTTCATGGAGGTGAAG +
Preference number: 5 (lower is better)
Translates to: SLHVRPSPSVFISLL*RRFLHQRGLFMEVK
Trigger: CTTCACCTCCATGAAGAGCCCACGTTGGTGAAGGAACCTTCTCCAAAGCAACGAGATAAAAACAGAAGGCGAAGGACGAACGTGCAGCGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000180646.8
ENSMUST00000181401.8
CDS-3UTR CAA 90 bp TGCTATGCAGCCATGGCTTACCTTGAAGTCACTGTAAGCCAGGCTAGCCTCAAACATGGTGTGAGTAAGTaGGCTGGGCTCCCTGGTTAT +
Preference number: 5 (lower is better)
Translates to: CYAAMAYLEVTVSQASLKHGVSK*AGLPGY
Trigger: ATAACCAGGGAGCCCAGCCAACTTACTCACACCATG...TTTGAGGCTAGCCTGGCTTACAGTGACTTCAAGGTAAGCCATGGCTGCATAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp TTATCAGTTCCAGATCTGCAGTTCTCAAGAACGTCCTTGGGCTCTGCTGATGACTTGAACTCGTGTCAGTaGGGCTTCTGTGGCTGCCAG +
Preference number: 5 (lower is better)
Translates to: LSVPDLQFSRTSLGSADDLNSCQ*GFCGCQ
Trigger: CTGGCAGCCACAGAAGCCCAACTGACACGAGTTCAA...GTCATCAGCAGAGCCCAAGGACGTTCTTGAGAACTGCAGATCTGGAACTGATAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp GACTGTGACTTGGCTGAGCTGGGCTGGTGTCTGGTCTTCAGTGGTTCTGGTTTCAAGGATGTCGGTGTCTaGAAACTTCAGCTTTCCATC +
Preference number: 5 (lower is better)
Translates to: DCDLAELGWCLVFSGSGFKDVGV*KLQLSI
Trigger: GATGGAAAGCTGAAGTTTCAAGACACCGACATCCTT...GAAACCAGAACCACTGAAGACCAGACACCAGCCCAGCTCAGCCAAGTCACAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp TGTCTTGGCCTAGAATATCTTGACAAGAAGAGAAGCGGGAAGAAGGCCACACCCCAGCTTTTGTCAGTGTaGCCTCCAGCTCCTCCTGAT +
Preference number: 5 (lower is better)
Translates to: CLGLEYLDKKRSGKKATPQLLSV*PPAPPD
Trigger: ATCAGGAGGAGCTGGAGGCAACACTGACAAAAGCTG...GGGTGTGGCCTTCTTCCCGCTTCTCTTCTTGTCAAGATATTCTAGGCCAAGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp TGTCCCACTTCGCCGCCTCTGTTCTGTGACTTTATGAGAAGGGGCTTCTCAGATTTTCCCTGTCAGCTTTaGTCAGTGTTGCCTCCAGCT +
Preference number: 5 (lower is better)
Translates to: CPTSPPLFCDFMRRGFSDFPCQL*SVLPPA
Trigger: AGCTGGAGGCAACACTGACAAAAGCTGACAGGGAAA...ATCTGAGAAGCCCCTTCTCATAAAGTCACAGAACAGAGGCGGCGAAGTGGGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp GTGTCTGGTCTTCAGTGGTTCTGGTTTCTTGCCTCATGCACATTCTGGGGTTGTGCTTTCTTTCGCTTATaGCATGCCTGGAGGCTGGGT +
Preference number: 5 (lower is better)
Translates to: VSGLQWFWFLASCTFWGCAFFRL*HAWRLG
Trigger: ACCCAGCCTCCAGGCATGCAATAAGCGAAAGAAAGC...ACAACCCCAGAATGTGCATGAGGCAAGAAACCAGAACCACTGAAGACCAGACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp TGCAGTTCTCAAGAACGTCCTTGGGCTCTGCTGATGACTGTGACTTGGCTGAGCACTTTGATGGATCCATaGGACTTCTCCCCAGAGTCT +
Preference number: 5 (lower is better)
Translates to: CSSQERPWALLMTVTWLSTLMDP*DFSPES
Trigger: AGACTCTGGGGAGAAGTCCAATGGATCCATCAAAGT...GCTCAGCCAAGTCACAGTCATCAGCAGAGCCCAAGGACGTTCTTGAGAACTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp ATGATCCTCTCGCTCTGCCTCCCAAGTGCTAAGGCTACAGGCTTGAGTCACTGTACTGACTTCAGAAGCTaGTTCACAGGATTCCTGGTC +
Preference number: 5 (lower is better)
Translates to: MILSLCLPSAKATGLSHCTDFRS*FTGFLV
Trigger: GACCAGGAATCCTGTGAACAAGCTTCTGAAGTCAGT...ACAGTGACTCAAGCCTGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS TCA 90 bp AGCTCCACGTTCTCCTTAATGGAAGCTCGAAGCTCTGCAGCCTTCTaGGTGCACTCCTCTGAGCTTCTCTGTTCAGGCTTTTCAACTTTG +
Preference number: 5 (lower is better)
Translates to: SSTFSLMEARSSAAF*VHSSELLCSGFSTL
Trigger: CAAAGTTGAAAAGCCTGAACAGAGAAGCTCAGAGGAGTGCACTCAGAAGGCTGCAGAGCTTCGAGCTTCCATTAAGGAGAACGTGGAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000180646.8
ENSMUST00000181401.8
CDS-3UTR CAA 90 bp TTATCAGTTCCAGATCTGCAGTTCTCAAGAACGTCCTTGGGCTCTGCTGATGACCATGGTGTGAGTAAGTaGGCTGGGCTCCCTGGTTAT +
Preference number: 5 (lower is better)
Translates to: LSVPDLQFSRTSLGSADDHGVSK*AGLPGY
Trigger: ATAACCAGGGAGCCCAGCCAACTTACTCACACCATG...GTCATCAGCAGAGCCCAAGGACGTTCTTGAGAACTGCAGATCTGGAACTGATAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp TTATCAGTTCCAGATCTGCAGTTCTCAAGAACGTCCTTGGGCTCTGCTGATGACTCACTCAGCTCTGCCTaGAGCTCATTCACTTGGCTG +
Preference number: 5 (lower is better)
Translates to: LSVPDLQFSRTSLGSADDSLSSA*SSFTWL
Trigger: CAGCCAAGTGAATGAGCTCAAGGCAGAGCTGAGTGA...GTCATCAGCAGAGCCCAAGGACGTTCTTGAGAACTGCAGATCTGGAACTGATAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp CCTCCGTCCGTCCCTTTATCAGTTCCAGATCTGCAGTTCTCAAGAACGTCCTTGTCTCGTCTTGAGCTTTaGGTTCACTGGACTCTCTCT +
Preference number: 5 (lower is better)
Translates to: PPSVPLSVPDLQFSRTSLSRLEL*VHWTLS
Trigger: AGAGAGAGTCCAGTGAACCAAAAGCTCAAGACGAGA...CAAGGACGTTCTTGAGAACTGCAGATCTGGAACTGATAAAGGGACGGACGGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp AAGTCGTGTCTTGGCCTAGAATATCTTGACAAGAAGAGAAGCGGGAAGAAGGCCCAGCTTTTGTCAGTGTaGCCTCCAGCTCCTCCTGAT +
Preference number: 5 (lower is better)
Translates to: KSCLGLEYLDKKRSGKKAQLLSV*PPAPPD
Trigger: ATCAGGAGGAGCTGGAGGCAACACTGACAAAAGCTG...GGCCTTCTTCCCGCTTCTCTTCTTGTCAAGATATTCTAGGCCAAGACACGACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp GCTAGCCTCAAATGTATGATCCTCTCGCTCTGCCTCCCAAGTGCTAAGGCTACAACTTTGATGGATCCATaGGACTTCTCCCCAGAGTCT +
Preference number: 5 (lower is better)
Translates to: ASLKCMILSLCLPSAKATTLMDP*DFSPES
Trigger: AGACTCTGGGGAGAAGTCCAATGGATCCATCAAAGT...TGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCATACATTTGAGGCTAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp AGACACTTTGACTGTGATGCCCTCAAATCGTTGAGTGGAGTAGAACTTGTACTTGAGGGCAGCAGCTGCTaGGAGGGAAACCTTCAGCCT +
Preference number: 5 (lower is better)
Translates to: RHFDCDALKSLSGVELVLEGSSC*EGNLQP
Trigger: AGGCTGAAGGTTTCCCTCCAAGCAGCTGCTGCCCTC...AAGTACAAGTTCTACTCCACTCAACGATTTGAGGGCATCACAGTCAAAGTGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181017.8
ENSMUST00000181736.2
CDS TCA 90 bp GATCTGGGGATCTCTTCCACATGTGTAGAATCAGTCGTCATGGTGTaGGTAAGTTGGCTGGGCTCCCTGGTTATTTCGATTCTGGTGTTC +
Preference number: 5 (lower is better)
Translates to: DLGISSTCVESVVMV*VSWLGSLVISILVF
Trigger: GAACACCAGAATCGAAATAACCAGGGAGCCCAGCCAACTTACTCACACCATGACGACTGATTCTACACATGTGGAAGAGATCCCCAGATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000180646.8
ENSMUST00000181401.8
CDS CCA 90 bp TTCTGTTTTTATCTCGTTGCTTTGGAGAAGGTTCCTTCACCAACGTaGGCTCTTCATGGAGGTGAAGGCGTCTGCAGTTCAGCTCCTTCT +
Preference number: 5 (lower is better)
Translates to: FCFYLVALEKVPSPT*ALHGGEGVCSSAPS
Trigger: AGAAGGAGCTGAACTGCAGACGCCTTCACCTCCATGAAGAGCCCACGTTGGTGAAGGAACCTTCTCCAAAGCAACGAGATAAAAACAGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000180646.8
ENSMUST00000181401.8
CDS-3UTR CAA 90 bp GAGTGGGCTGAGCAGCCAGTTCACACAGCTCTTCTGGAGATGAGGCTACAGTGGTATTCCCTGATTCTTTaGAAGCAAGTCTTCATATGC +
Preference number: 5 (lower is better)
Translates to: EWAEQPVHTALLEMRLQWYSLIL*KQVFIC
Trigger: GCATATGAAGACTTGCTTCAAAAGAATCAGGGAATA...CCACTGTAGCCTCATCTCCAGAAGAGCTGTGTGAACTGGCTGCTCAGCCCACTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181709.2
CDS-3UTR CAA 90 bp CTCATGCACATTCTGGGGTTGTTTTTGCTGCATCAGAAGACAAACACTGGCACTGCCTCCAGGACATCTTaGTTCTCATCCTCCTCCTCT +
Preference number: 5 (lower is better)
Translates to: LMHILGLFLLHQKTNTGTASRTS*FSSSSS
Trigger: AGAGGAGGAGGATGAGAACAAAGATGTCCTGGAGGC...AGTGCCAGTGTTTGTCTTCTGATGCAGCAAAAACAACCCCAGAATGTGCATGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp TGTCCCACTTCGCCGCCTCTGTTCTGTGACTTTATGAGAAGGGGCTTCTCAGATTGGACACCTGGTTTTTaGCTGTGTTTTCTTCGTGAG +
Preference number: 5 (lower is better)
Translates to: CPTSPPLFCDFMRRGFSDWTPGF*LCFLRE
Trigger: CTCACGAAGAAAACACAGCAAAAAACCAGGTGTCCA...ATCTGAGAAGCCCCTTCTCATAAAGTCACAGAACAGAGGCGGCGAAGTGGGACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp AGACACTTTGACTGTGATGCCCTCAAATCGTTGAGTGGAGTAGAACTTGTACTTCCATCCTCGGCCTTCTaGAGCCCTGAGAACTTCCAC +
Preference number: 5 (lower is better)
Translates to: RHFDCDALKSLSGVELVLPSSAF*SPENFH
Trigger: GTGGAAGTTCTCAGGGCTCAAGAAGGCCGAGGATGG...AAGTACAAGTTCTACTCCACTCAACGATTTGAGGGCATCACAGTCAAAGTGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181017.8
CDS-3UTR CAA 90 bp GTGTCTGGTCTTCAGTGGTTCTGGTTTCTTGCCTCATGCACATTCTGGGGTTGTACTGACTTCAGAAGCTaGTTCACAGGATTCCTGGTC +
Preference number: 5 (lower is better)
Translates to: VSGLQWFWFLASCTFWGCTDFRS*FTGFLV
Trigger: GACCAGGAATCCTGTGAACAAGCTTCTGAAGTCAGT...ACAACCCCAGAATGTGCATGAGGCAAGAAACCAGAACCACTGAAGACCAGACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp GCTAGCCTCAAATGTATGATCCTCTCGCTCTGCCTCCCAAGTGCTAAGGCTACAGGCAGATCACAGAATTaGTACTCCACATATACCTGC +
Preference number: 5 (lower is better)
Translates to: ASLKCMILSLCLPSAKATGRSQN*YSTYTC
Trigger: GCAGGTATATGTGGAGTACAAATTCTGTGATCTGCC...TGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCATACATTTGAGGCTAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp AGTCAGTCCTCCGTCCGTCCCTTTATCAGTTCCAGATCTGCAGTTCTCAAGAACATACCTTCCAGCTGTTaGATGCGGCTGTTCTTGAAG +
Preference number: 5 (lower is better)
Translates to: SQSSVRPFISSRSAVLKNIPSSC*MRLFLK
Trigger: CTTCAAGAACAGCCGCATCAAACAGCTGGAAGGTAT...GTTCTTGAGAACTGCAGATCTGGAACTGATAAAGGGACGGACGGAGGACTGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111603.10
CDS TCA 90 bp CTTAATGGAAGCTCGAAGCTCTGCAGCCTTCTGAGTGCACTCCTCTaGGCTTCTCTGTTCAGGCTTTTCAACTTTGGATGTTTTCTCAGG +
Preference number: 5 (lower is better)
Translates to: LNGSSKLCSLLSALL*ASLFRLFNFGCFLR
Trigger: CCTGAGAAAACATCCAAAGTTGAAAAGCCTGAACAGAGAAGCTCAGAGGAGTGCACTCAGAAGGCTGCAGAGCTTCGAGCTTCCATTAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000180646.8
ENSMUST00000181401.8
CDS-3UTR CAA 90 bp CTTGGTTTCCTCAGGGACATCGGAGTCTCTGTCTCCGATAGAGGCAGATCACAGTCTGTTTTTATCTCGTaGCTTTGGAGAAGGTTCCTT +
Preference number: 5 (lower is better)
Translates to: LGFLRDIGVSVSDRGRSQSVFIS*LWRRFL
Trigger: AAGGAACCTTCTCCAAAGCAACGAGATAAAAACAGA...CTGTGATCTGCCTCTATCGGAGACAGAGACTCCGATGTCCCTGAGGAAACCAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
CDS-3UTR CAA 90 bp ATGATCCTCTCGCTCTGCCTCCCAAGTGCTAAGGCTACAGGCTTGAGTCACTGTTCAGGCTTTTCAACTTaGGATGTTTTCTCAGGAGAT +
Preference number: 5 (lower is better)
Translates to: MILSLCLPSAKATGLSHCSGFST*DVFSGD
Trigger: ATCTCCTGAGAAAACATCCAAAGTTGAAAAGCCTGA...ACAGTGACTCAAGCCTGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp AGACACTTTGACTGTGATGCCCTCAAATCGTTGAGTGGAGTAGAACTTGTACTTTTGAACTCGTGTCAGTaGGGCTTCTGTGGCTGCCAG +
Preference number: 5 (lower is better)
Translates to: RHFDCDALKSLSGVELVLLNSCQ*GFCGCQ
Trigger: CTGGCAGCCACAGAAGCCCAACTGACACGAGTTCAA...AAGTACAAGTTCTACTCCACTCAACGATTTGAGGGCATCACAGTCAAAGTGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000180646.8
CDS-3UTR CAA 90 bp TGTCTTGGCCTAGAATATCTTGACAAGAAGAGAAGCGGGAAGAAGGCCACACCCGGCAGATCACAGAATTaGTACTCCACATATACCTGC +
Preference number: 5 (lower is better)
Translates to: CLGLEYLDKKRSGKKATPGRSQN*YSTYTC
Trigger: GCAGGTATATGTGGAGTACAAATTCTGTGATCTGCC...GGGTGTGGCCTTCTTCCCGCTTCTCTTCTTGTCAAGATATTCTAGGCCAAGACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp TGTCCCACTTCGCCGCCTCTGTTCTGTGACTTTATGAGAAGGGGCTTCTCAGATTCTGTTTTTATCTCGTaGCTTTGGAGAAGGTTCCTT +
Preference number: 5 (lower is better)
Translates to: CPTSPPLFCDFMRRGFSDSVFIS*LWRRFL
Trigger: AAGGAACCTTCTCCAAAGCAACGAGATAAAAACAGA...ATCTGAGAAGCCCCTTCTCATAAAGTCACAGAACAGAGGCGGCGAAGTGGGACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp GCTAGCCTCAAATGTATGATCCTCTCGCTCTGCCTCCCAAGTGCTAAGGCTACATCAGGCTTTTCAACTTaGGATGTTTTCTCAGGAGAT +
Preference number: 5 (lower is better)
Translates to: ASLKCMILSLCLPSAKATSGFST*DVFSGD
Trigger: ATCTCCTGAGAAAACATCCAAAGTTGAAAAGCCTGA...TGTAGCCTTAGCACTTGGGAGGCAGAGCGAGAGGATCATACATTTGAGGCTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp ACTGTGACTTGGCTGAGCTGGGCTGGTGTCTGGTCTTCAGTGGTTCTGGTTTCTTATTCCCTGATTCTTTaGAAGCAAGTCTTCATATGC +
Preference number: 5 (lower is better)
Translates to: TVTWLSWAGVWSSVVLVSYSLIL*KQVFIC
Trigger: GCATATGAAGACTTGCTTCAAAAGAATCAGGGAATA...AGAAACCAGAACCACTGAAGACCAGACACCAGCCCAGCTCAGCCAAGTCACAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp AGACACTTTGACTGTGATGCCCTCAAATCGTTGAGTGGAGTAGAACTTGTACTTTCACTCAGCTCTGCCTaGAGCTCATTCACTTGGCTG +
Preference number: 5 (lower is better)
Translates to: RHFDCDALKSLSGVELVLSLSSA*SSFTWL
Trigger: CAGCCAAGTGAATGAGCTCAAGGCAGAGCTGAGTGA...AAGTACAAGTTCTACTCCACTCAACGATTTGAGGGCATCACAGTCAAAGTGTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp TGCTATGCAGCCATGGCTTACCTTGAAGTCACTGTAAGCCAGGCTAGCCTCAAATTTGATAGATTTGTTTaGTGCAAGAGGCAGCAAGGG +
Preference number: 5 (lower is better)
Translates to: CYAAMAYLEVTVSQASLKFDRFV*CKRQQG
Trigger: CCCTTGCTGCCTCTTGCACAAAACAAATCTATCAAA...TTTGAGGCTAGCCTGGCTTACAGTGACTTCAAGGTAAGCCATGGCTGCATAGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp AGTCAGTCCTCCGTCCGTCCCTTTATCAGTTCCAGATCTGCAGTTCTCAAGAACTTTGATAGATTTGTTTaGTGCAAGAGGCAGCAAGGG +
Preference number: 5 (lower is better)
Translates to: SQSSVRPFISSRSAVLKNFDRFV*CKRQQG
Trigger: CCCTTGCTGCCTCTTGCACAAAACAAATCTATCAAA...GTTCTTGAGAACTGCAGATCTGGAACTGATAAAGGGACGGACGGAGGACTGACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp TGCTATGCAGCCATGGCTTACCTTGAAGTCACTGTAAGCCAGGCTAGCCTCAAATCACCTTTGATAGATTaGTTTTGTGCAAGAGGCAGC +
Preference number: 5 (lower is better)
Translates to: CYAAMAYLEVTVSQASLKSPLID*FCARGS
Trigger: GCTGCCTCTTGCACAAAACAAATCTATCAAAGGTGA...TTTGAGGCTAGCCTGGCTTACAGTGACTTCAAGGTAAGCCATGGCTGCATAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp AGACACTTTGACTGTGATGCCCTCAAATCGTTGAGTGGAGTAGAACTTGTACTTGCCTCCAGGACATCTTaGTTCTCATCCTCCTCCTCT +
Preference number: 5 (lower is better)
Translates to: RHFDCDALKSLSGVELVLASRTS*FSSSSS
Trigger: AGAGGAGGAGGATGAGAACAAAGATGTCCTGGAGGC...AAGTACAAGTTCTACTCCACTCAACGATTTGAGGGCATCACAGTCAAAGTGTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181017.8
CDS-3UTR CAA 90 bp AAGTCGTGTCTTGGCCTAGAATATCTTGACAAGAAGAGAAGCGGGAAGAAGGCCCAAAAAGATTCTCGCTaGGATGCAGCAGAGACATGT +
Preference number: 5 (lower is better)
Translates to: KSCLGLEYLDKKRSGKKAQKDSR*DAAETC
Trigger: ACATGTCTCTGCTGCATCCAAGCGAGAATCTTTTTG...GGCCTTCTTCCCGCTTCTCTTCTTGTCAAGATATTCTAGGCCAAGACACGACTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp TGTCTTGGCCTAGAATATCTTGACAAGAAGAGAAGCGGGAAGAAGGCCACACCCTCTGTTTTTATCTCGTaGCTTTGGAGAAGGTTCCTT +
Preference number: 5 (lower is better)
Translates to: CLGLEYLDKKRSGKKATPSVFIS*LWRRFL
Trigger: AAGGAACCTTCTCCAAAGCAACGAGATAAAAACAGA...GGGTGTGGCCTTCTTCCCGCTTCTCTTCTTGTCAAGATATTCTAGGCCAAGACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp TGTCCCACTTCGCCGCCTCTGTTCTGTGACTTTATGAGAAGGGGCTTCTCAGATTATTCCCTGATTCTTTaGAAGCAAGTCTTCATATGC +
Preference number: 5 (lower is better)
Translates to: CPTSPPLFCDFMRRGFSDYSLIL*KQVFIC
Trigger: GCATATGAAGACTTGCTTCAAAAGAATCAGGGAATA...ATCTGAGAAGCCCCTTCTCATAAAGTCACAGAACAGAGGCGGCGAAGTGGGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp TTATCAGTTCCAGATCTGCAGTTCTCAAGAACGTCCTTGGGCTCTGCTGATGACTCTTTAAAGTATGGATaGCTGCTGGCTGGAATGATG +
Preference number: 5 (lower is better)
Translates to: LSVPDLQFSRTSLGSADDSLKYG*LLAGMM
Trigger: CATCATTCCAGCCAGCAGCAATCCATACTTTAAAGA...GTCATCAGCAGAGCCCAAGGACGTTCTTGAGAACTGCAGATCTGGAACTGATAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp TTATCAGTTCCAGATCTGCAGTTCTCAAGAACGTCCTTGGGCTCTGCTGATGACTCACCTTTGATAGATTaGTTTTGTGCAAGAGGCAGC +
Preference number: 5 (lower is better)
Translates to: LSVPDLQFSRTSLGSADDSPLID*FCARGS
Trigger: GCTGCCTCTTGCACAAAACAAATCTATCAAAGGTGA...GTCATCAGCAGAGCCCAAGGACGTTCTTGAGAACTGCAGATCTGGAACTGATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp AGTCAGTCCTCCGTCCGTCCCTTTATCAGTTCCAGATCTGCAGTTCTCAAGAACCCAGAGTCTGTGAGATaGAAATCACCTTTGATAGAT +
Preference number: 5 (lower is better)
Translates to: SQSSVRPFISSRSAVLKNPESVR*KSPLID
Trigger: ATCTATCAAAGGTGATTTCAATCTCACAGACTCTGG...GTTCTTGAGAACTGCAGATCTGGAACTGATAAAGGGACGGACGGAGGACTGACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp GTCCATATGTGGTGCAGTGCTCAAACACAAATTACCATTGTCTCTTCTGATACAGCCTCCAGGACATCTTaGTTCTCATCCTCCTCCTCT +
Preference number: 5 (lower is better)
Translates to: VHMWCSAQTQITIVSSDTASRTS*FSSSSS
Trigger: AGAGGAGGAGGATGAGAACAAAGATGTCCTGGAGGC...TGTATCAGAAGAGACAATGGTAATTTGTGTTTGAGCACTGCACCACATATGGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS GCA 90 bp ATTATTTACCTCCTTCAGAGTTATCTTTTGAAGCAAGTCTTCATATaGCTCTTGAACTCGTGTCAGTTGGGCTTCTGTGGCTGCCAGCGA +
Preference number: 5 (lower is better)
Translates to: IIYLLQSYLLKQVFI*LLNSCQLGFCGCQR
Trigger: TCGCTGGCAGCCACAGAAGCCCAACTGACACGAGTTCAAGAGGCATATGAAGACTTGCTTCAAAAGATAACTCTGAAGGAGGTAAATAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
CDS-3UTR CAA 90 bp ATCTGCTGTGTGTTTCCATTCAAGATGTTACAGCTCAGATATTCCATTCTGTTCGCTTTCTTTCGCTTATaGCATGCCTGGAGGCTGGGT +
Preference number: 5 (lower is better)
Translates to: ICCVFPFKMLQLRYSILFAFFRL*HAWRLG
Trigger: ACCCAGCCTCCAGGCATGCAATAAGCGAAAGAAAGC...GAACAGAATGGAATATCTGAGCTGTAACATCTTGAATGGAAACACACAGCAGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181627.8
CDS-3UTR CAA 90 bp AGACACTTTGACTGTGATGCCCTCAAATCGTTGAGTGGAGTAGAACTTGTACTTACTGACTTCAGAAGCTaGTTCACAGGATTCCTGGTC +
Preference number: 5 (lower is better)
Translates to: RHFDCDALKSLSGVELVLTDFRS*FTGFLV
Trigger: GACCAGGAATCCTGTGAACAAGCTTCTGAAGTCAGT...AAGTACAAGTTCTACTCCACTCAACGATTTGAGGGCATCACAGTCAAAGTGTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181017.8
CDS-3UTR CAA 90 bp CTGGTCTTCAGTGGTTCTGGTTTCTTGCCTCATGCACATTCTGGGGTTGTTTTTCCAGAGTCTGTGAGATaGAAATCACCTTTGATAGAT +
Preference number: 5 (lower is better)
Translates to: LVFSGSGFLPHAHSGVVFPESVR*KSPLID
Trigger: ATCTATCAAAGGTGATTTCAATCTCACAGACTCTGG...AAAAACAACCCCAGAATGTGCATGAGGCAAGAAACCAGAACCACTGAAGACCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp GCATCTGCTGTGTGTTTCCATTCAAGATGTTACAGCTCAGATATTCCATTCTGTACTTTGATGGATCCATaGGACTTCTCCCCAGAGTCT +
Preference number: 5 (lower is better)
Translates to: ASAVCFHSRCYSSDIPFCTLMDP*DFSPES
Trigger: AGACTCTGGGGAGAAGTCCAATGGATCCATCAAAGT...ACAGAATGGAATATCTGAGCTGTAACATCTTGAATGGAAACACACAGCAGATGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181627.8
CDS-3UTR CAA 90 bp TCTGGTCTTCAGTGGTTCTGGTTTCTTGCCTCATGCACATTCTGGGGTTGTTTTTATTCCATTCTGTTCTaGTCTTGGACACCTGGTTTT +
Preference number: 5 (lower is better)
Translates to: SGLQWFWFLASCTFWGCFYSILF*SWTPGF
Trigger: AAAACCAGGTGTCCAAGACAAGAACAGAATGGAATA...AAAACAACCCCAGAATGTGCATGAGGCAAGAAACCAGAACCACTGAAGACCAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp CTGGTCTTCAGTGGTTCTGGTTTCTTGCCTCATGCACATTCTGGGGTTGTTTTTTATTCCATTCTGTTCTaGTCTTGGACACCTGGTTTT +
Preference number: 5 (lower is better)
Translates to: LVFSGSGFLPHAHSGVVFYSILF*SWTPGF
Trigger: AAAACCAGGTGTCCAAGACAAGAACAGAATGGAATA...AAAAACAACCCCAGAATGTGCATGAGGCAAGAAACCAGAACCACTGAAGACCAG
43% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp AGACACTTTGACTGTGATGCCCTCAAATCGTTGAGTGGAGTAGAACTTGTACTTGGCAGATCACAGAATTaGTACTCCACATATACCTGC +
Preference number: 5 (lower is better)
Translates to: RHFDCDALKSLSGVELVLGRSQN*YSTYTC
Trigger: GCAGGTATATGTGGAGTACAAATTCTGTGATCTGCC...AAGTACAAGTTCTACTCCACTCAACGATTTGAGGGCATCACAGTCAAAGTGTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181017.8
CDS-3UTR CAA 90 bp GTCCATATGTGGTGCAGTGCTCAAACACAAATTACCATTGTCTCTTCTGATACATCTTTAAAGTATGGATaGCTGCTGGCTGGAATGATG +
Preference number: 5 (lower is better)
Translates to: VHMWCSAQTQITIVSSDTSLKYG*LLAGMM
Trigger: CATCATTCCAGCCAGCAGCAATCCATACTTTAAAGA...TGTATCAGAAGAGACAATGGTAATTTGTGTTTGAGCACTGCACCACATATGGAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp GCTGTGTGTTTCCATTCAAGATGTTACAGCTCAGATATTCCATTCTGTTCTTGTCCAGAGTCTGTGAGATaGAAATCACCTCATTGCTCT +
Preference number: 5 (lower is better)
Translates to: AVCFHSRCYSSDIPFCSCPESVR*KSPHCS
Trigger: AGAGCAATGAGGTGATTTCAATCTCACAGACTCTGG...ACAAGAACAGAATGGAATATCTGAGCTGTAACATCTTGAATGGAAACACACAGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181627.8
CDS-3UTR CAA 90 bp AAACTTGTCTCTTATGACCATTTCTTTGCAGTTTCTGAAGTCAAGTCAAGTTCATCTCGTCTTGAGCTTTaGGTTCACTGGACTCTCTCT +
Preference number: 5 (lower is better)
Translates to: KLVSYDHFFAVSEVKSSSSRLEL*VHWTLS
Trigger: AGAGAGAGTCCAGTGAACCAAAAGCTCAAGACGAGA...TGAACTTGACTTGACTTCAGAAACTGCAAAGAAATGGTCATAAGAGACAAGTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp AAACTTGTCTCTTATGACCATTTCTTTGCAGTTTCTGAAGTCAAGTCAAGTTCAAAGGATGTCGGTGTCTaGAAACTTCAGCTTTCCATC +
Preference number: 5 (lower is better)
Translates to: KLVSYDHFFAVSEVKSSSKDVGV*KLQLSI
Trigger: GATGGAAAGCTGAAGTTTCAAGACACCGACATCCTT...TGAACTTGACTTGACTTCAGAAACTGCAAAGAAATGGTCATAAGAGACAAGTTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp AAACTTGTCTCTTATGACCATTTCTTTGCAGTTTCTGAAGTCAAGTCAAGTTCATGGACACCTGGTTTTTaGCTGTGTTTTCTTCGTGAG +
Preference number: 5 (lower is better)
Translates to: KLVSYDHFFAVSEVKSSSWTPGF*LCFLRE
Trigger: CTCACGAAGAAAACACAGCAAAAAACCAGGTGTCCA...TGAACTTGACTTGACTTCAGAAACTGCAAAGAAATGGTCATAAGAGACAAGTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
CDS-3UTR CAA 90 bp AAACTTGTCTCTTATGACCATTTCTTTGCAGTTTCTGAAGTCAAGTCAAGTTCACTTCAGAGTTATCTTTaGAAGCAAGTCTTCATATGC +
Preference number: 5 (lower is better)
Translates to: KLVSYDHFFAVSEVKSSSLQSYL*KQVFIC
Trigger: GCATATGAAGACTTGCTTCAAAAGATAACTCTGAAG...TGAACTTGACTTGACTTCAGAAACTGCAAAGAAATGGTCATAAGAGACAAGTTT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
CDS GCA 72 bp CTGCCTACCGCGGTCGAGGGACACAGGCGCTGCACATaGGCTTTCCTCCCGGGAACTGGTGCGCGCGGGGGC +
Preference number: 6 (lower is better)
Translates to: LPTAVEGHRRCT*AFLPGTGARGG
Trigger: GCCCCCGCGCGCACCAGTTCCCGGGAGGAAAGCGCATGTGCAGCGCCTGTGTCCCTCGACCGCGGTAGGCAG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000180646.8
ENSMUST00000181401.8
CDS GCA 72 bp GCAGTCTGCGTCCCGCGTGGACTCGAGGCTGTGCACTaGCTACCGCGGTCGAGGGACACAGGCGCTGCACAT +
Preference number: 6 (lower is better)
Translates to: AVCVPRGLEAVH*LPRSRDTGAAH
Trigger: ATGTGCAGCGCCTGTGTCCCTCGACCGCGGTAGGCAGTGCACAGCCTCGAGTCCACGCGGGACGCAGACTGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000180646.8
ENSMUST00000181401.8
CDS CCA 72 bp GCTGAGACCCACGGCCGCCTGCGCCTCTCTGGCTCCTaGAGCACAGCAAGTGTCCGTAGGTCCGGTTGGGTA +
Preference number: 6 (lower is better)
Translates to: AETHGRLRLSGS*STASVRRSGWV
Trigger: TACCCAACCGGACCTACGGACACTTGCTGTGCTCCAGGAGCCAGAGAGGCGCAGGCGGCCGTGGGTCTCAGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000180646.8
ENSMUST00000181401.8
CDS CCA 72 bp GGCTCCTGGAGCACAGCAAGTGTCCGTAGGTCCGGTTaGGTAGTTGTGGATCGCTGCACGTTCGTCCTTCGC +
Preference number: 6 (lower is better)
Translates to: GSWSTASVRRSG*VVVDRCTFVLR
Trigger: GCGAAGGACGAACGTGCAGCGATCCACAACTACCCAACCGGACCTACGGACACTTGCTGTGCTCCAGGAGCC
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000180646.8
ENSMUST00000181401.8
CDS CAA 72 bp CACAGCGACGGTGGCAGAGTGCCATACGCGACATCTTaGAGCTGCTCAGATGTTGGAAGGCCGTGGCTTCTT +
Preference number: 6 (lower is better)
Translates to: HSDGGRVPYATS*SCSDVGRPWLL
Trigger: AAGAAGCCACGGCCTTCCAACATCTGAGCAGCTCAAAGATGTCGCGTATGGCACTCTGCCACCGTCGCTGTG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111603.10
CDS TCA 72 bp ACAGCGACGGTGGCAGAGTGCCATACGCGACATCTTTaGGCTGCTCAGATGTTGGAAGGCCGTGGCTTCTTA +
Preference number: 6 (lower is better)
Translates to: TATVAECHTRHL*AAQMLEGRGFL
Trigger: TAAGAAGCCACGGCCTTCCAACATCTGAGCAGCTCAAAGATGTCGCGTATGGCACTCTGCCACCGTCGCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111603.10
CDS GCA 72 bp TCTGCTAGGGAGAAGGCATTTCTAGGATGTGAGGGATaGTCCTGTCTCAGTGCTGAACGGGGTGATGGCGGT +
Preference number: 6 (lower is better)
Translates to: SAREKAFLGCEG*SCLSAERGDGG
Trigger: ACCGCCATCACCCCGTTCAGCACTGAGACAGGAGCATCCCTCACATCCTAGAAATGCCTTCTCCCTAGCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181017.8
ENSMUST00000181401.8
CDS CAA 90 bp GGCTCCAGACACAGCGACGGTGGCAGAGTGCCATACGCGACATCTTaGAGCTGCTCAGATGTTGGAAGGCCGTGGCTTCTTAAAATACCT +
Preference number: 6 (lower is better)
Translates to: GSRHSDGGRVPYATS*SCSDVGRPWLLKIP
Trigger: AGGTATTTTAAGAAGCCACGGCCTTCCAACATCTGAGCAGCTCAAAGATGTCGCGTATGGCACTCTGCCACCGTCGCTGTGTCTGGAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111603.10
CDS TCA 72 bp CCTCATTGCTCTGGACCTTCCGAGCTCCAAGCACACTaGCTGACAGGTAGGCCTGGGCTTTCTTTCGCTTAT +
Preference number: 6 (lower is better)
Translates to: PHCSGPSELQAH*LTGRPGLSFAY
Trigger: ATAAGCGAAAGAAAGCCCAGGCCTACCTGTCAGTCAGTGTGCTTGGAGCTCGGAAGGTCCAGAGCAATGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181627.8
CDS GCA 72 bp GACGGTGGCAGAGTGCCATACGCGACATCTTTGAGCTaGTCTTCCAGCTGTTTGATGCGGCTGTTCTTGAAG +
Preference number: 6 (lower is better)
Translates to: DGGRVPYATSLS*SSSCLMRLFLK
Trigger: CTTCAAGAACAGCCGCATCAAACAGCTGGAAGAGCAGCTCAAAGATGTCGCGTATGGCACTCTGCCACCGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181401.8
CDS GCA 72 bp GATTCTGGTGTTCTTGTCCGCCACATAGTCTTTAAATaGGGGAGGGGCTGTATGGCTGCGCCTGTCATTTGG +
Preference number: 6 (lower is better)
Translates to: DSGVLVRHIVFK*GRGCMAAPVIW
Trigger: CCAAATGACAGGCGCAGCCATACAGCCCCTCCCGCATTTAAAGACTATGTGGCGGACAAGAACACCAGAATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000180646.8
ENSMUST00000181401.8
CDS CCA 72 bp CATATGCCTCTTGAACTCGTGTCAGTTGGGCTTCTGTaGCTGCCAGCGAGGTATTCCTCTCCTGTAAGAGCT +
Preference number: 6 (lower is better)
Translates to: HMPLELVSVGLL*LPARYSSPVRA
Trigger: AGCTCTTACAGGAGAGGAATACCTCGCTGGCAGCCACAGAAGCCCAACTGACACGAGTTCAAGAGGCATATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000180646.8
ENSMUST00000181401.8
ENSMUST00000181709.2
CDS CCA 72 bp CCCAGAGTCTGTGAGATTGAAATCACCTCATTGCTCTaGACCTTCCGAGCTCCAAGCACACTGACTGACAGG +
Preference number: 6 (lower is better)
Translates to: PRVCEIEITSLL*TFRAPSTLTDR
Trigger: CCTGTCAGTCAGTGTGCTTGGAGCTCGGAAGGTCCAGAGCAATGAGGTGATTTCAATCTCACAGACTCTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181627.8
CDS CAA 90 bp TGCACTTTGATGGATCCATTGGACTTCTCCCCAGAGTCTGTGAGATaGAAATCACCAGCGAGTGTGGCCAAGCCGTGGACTCTCTCCACA +
Preference number: 6 (lower is better)
Translates to: CTLMDPLDFSPESVR*KSPASVAKPWTLST
Trigger: TGTGGAGAGAGTCCACGGCTTGGCCACACTCGCTGGTGATTTCAATCTCACAGACTCTGGGGAGAAGTCCAATGGATCCATCAAAGTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180513.2
CDS GCA 72 bp GACGGTGGCAGAGTGCCATACGCGACATCTTTGAGCTaGTCAGATGTTGGAAGGCCGTGGCTTCTTAAAATA +
Preference number: 6 (lower is better)
Translates to: DGGRVPYATSLS*SDVGRPWLLKI
Trigger: TATTTTAAGAAGCCACGGCCTTCCAACATCTGAGCAGCTCAAAGATGTCGCGTATGGCACTCTGCCACCGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111603.10
CDS CAA 72 bp CTGCACGTTCGTCCTTCGCCTTCTGTTTTTATCTCGTaGCTTTGGAGAAGGTTCCTTCACCAACGTGGGCTC +
Preference number: 6 (lower is better)
Translates to: LHVRPSPSVFIS*LWRRFLHQRGL
Trigger: GAGCCCACGTTGGTGAAGGAACCTTCTCCAAAGCAACGAGATAAAAACAGAAGGCGAAGGACGAACGTGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000180646.8
ENSMUST00000181401.8
CDS CAA 90 bp ATCGCTGCACGTTCGTCCTTCGCCTTCTGTTTTTATCTCGTTGCTTaGGAGAAGGTTCCTTCACCAACGTGGGCTCTTCATGGAGGTGAA +
Preference number: 6 (lower is better)
Translates to: IAARSSFAFCFYLVA*EKVPSPTWALHGGE
Trigger: TTCACCTCCATGAAGAGCCCACGTTGGTGAAGGAACCTTCTCCAAAGCAACGAGATAAAAACAGAAGGCGAAGGACGAACGTGCAGCGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000180646.8
ENSMUST00000181401.8
CDS TCA 72 bp AGCTCGAAGCTCTGCAGCCTTCTGAGTGCACTCCTCTaGGCTTCTCTGTTCAGGCTTTTCAACTTTGGATGT +
Preference number: 6 (lower is better)
Translates to: SSKLCSLLSALL*ASLFRLFNFGC
Trigger: ACATCCAAAGTTGAAAAGCCTGAACAGAGAAGCTCAGAGGAGTGCACTCAGAAGGCTGCAGAGCTTCGAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000180646.8
ENSMUST00000181401.8
CDS CAA 72 bp ATGGATCCATTGGACTTCTCCCCAGAGTCTGTGAGATaGAAATCACCTCATTGCTCTGGACCTTCCGAGCTC +
Preference number: 6 (lower is better)
Translates to: MDPLDFSPESVR*KSPHCSGPSEL
Trigger: GAGCTCGGAAGGTCCAGAGCAATGAGGTGATTTCAATCTCACAGACTCTGGGGAGAAGTCCAATGGATCCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181627.8
CDS CAA 90 bp GATCTCTTCCACATGTGTAGAATCAGTCGTCATGGTGTGAGTAAGTaGGCTGGGCTCCCTGGTTATTTCGATTCTGGTGTTCTTGTCCGC +
Preference number: 6 (lower is better)
Translates to: DLFHMCRISRHGVSK*AGLPGYFDSGVLVR
Trigger: GCGGACAAGAACACCAGAATCGAAATAACCAGGGAGCCCAGCCAACTTACTCACACCATGACGACTGATTCTACACATGTGGAAGAGATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000180646.8
ENSMUST00000181401.8
CDS CAA 72 bp TCCCTGATTCTTTTGAAGCAAGTCTTCATATGCCTCTaGAACTCGTGTCAGTTGGGCTTCTGTGGCTGCCAG +
Preference number: 6 (lower is better)
Translates to: SLILLKQVFICL*NSCQLGFCGCQ
Trigger: CTGGCAGCCACAGAAGCCCAACTGACACGAGTTCAAGAGGCATATGAAGACTTGCTTCAAAAGAATCAGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181401.8
ENSMUST00000181709.2
CDS CAA 72 bp GCTCTCTTCACTCAGCTCTGCCTTGAGCTCATTCACTaGGCTGAGGAAGGCATTATGGGCTGTATCCAATAT +
Preference number: 6 (lower is better)
Translates to: ALFTQLCLELIH*AEEGIMGCIQY
Trigger: ATATTGGATACAGCCCATAATGCCTTCCTCAGCCAAGTGAATGAGCTCAAGGCAGAGCTGAGTGAAGAGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181401.8
ENSMUST00000181709.2
CDS TCA 72 bp TTCAGAGTTATCTGCAAGATAGACACATCTCCCAGCTaGGTCCTCAAGCTCACAGCCTTCTTGCTCTCTTCA +
Preference number: 6 (lower is better)
Translates to: FRVICKIDTSPS*VLKLTAFLLSS
Trigger: TGAAGAGAGCAAGAAGGCTGTGAGCTTGAGGACTCAGCTGGGAGATGTGTCTATCTTGCAGATAACTCTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181401.8
ENSMUST00000181709.2
CDS CCA 72 bp GTTTCACTGACTTCAGAAGCTTGTTCACAGGATTCCTaGTCTGCATTTCTAGGATGTGAGGGATGCTCCTGT +
Preference number: 6 (lower is better)
Translates to: VSLTSEACSQDS*SAFLGCEGCSC
Trigger: ACAGGAGCATCCCTCACATCCTAGAAATGCAGACCAGGAATCCTGTGAACAAGCTTCTGAAGTCAGTGAAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180500.8
CDS CAA 72 bp CACATGTGTAGAATCAGTCGTCATGGTGTGAGTAAGTaGGCTGGGCTCCCTGGTTATTTCGATTCTGGTGTT +
Preference number: 6 (lower is better)
Translates to: HMCRISRHGVSK*AGLPGYFDSGV
Trigger: AACACCAGAATCGAAATAACCAGGGAGCCCAGCCAACTTACTCACACCATGACGACTGATTCTACACATGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000180646.8
ENSMUST00000181401.8
CDS CAA 72 bp GCTGTCGGTAGTCTGTGTTTCACTGACTTCAGAAGCTaGTTCACAGGATTCCTGGTCTGCATTTCTAGGATG +
Preference number: 6 (lower is better)
Translates to: AVGSLCFTDFRS*FTGFLVCISRM
Trigger: CATCCTAGAAATGCAGACCAGGAATCCTGTGAACAAGCTTCTGAAGTCAGTGAAACACAGACTACCGACAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180500.8
CDS CAA 72 bp CAGAGTTATCTTTTGAAGCAAGTCTTCATATGCCTCTaGAACTCGTGTCAGTTGGGCTTCTGTGGCTGCCAG +
Preference number: 6 (lower is better)
Translates to: QSYLLKQVFICL*NSCQLGFCGCQ
Trigger: CTGGCAGCCACAGAAGCCCAACTGACACGAGTTCAAGAGGCATATGAAGACTTGCTTCAAAAGATAACTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180646.8
CDS CAA 90 bp GCTGAGGAAGGCATTATGGGCTGTATCCAATATTCCCTGATTCTTTaGAAGCAAGTCTTCATATGCCTCTTGAACTCGTGTCAGTTGGGC +
Preference number: 6 (lower is better)
Translates to: AEEGIMGCIQYSLIL*KQVFICLLNSCQLG
Trigger: GCCCAACTGACACGAGTTCAAGAGGCATATGAAGACTTGCTTCAAAAGAATCAGGGAATATTGGATACAGCCCATAATGCCTTCCTCAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181401.8
ENSMUST00000181709.2
CDS TCA 72 bp ATCTCTTCCACATGTGTAGAATCAGTCGTCATGGTGTaGGTAAGTTGGCTGGGCTCCCTGGTTATTTCGATT +
Preference number: 6 (lower is better)
Translates to: ISSTCVESVVMV*VSWLGSLVISI
Trigger: AATCGAAATAACCAGGGAGCCCAGCCAACTTACTCACACCATGACGACTGATTCTACACATGTGGAAGAGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000180646.8
ENSMUST00000181401.8
CDS CAA 72 bp GGCATTATGGGCTGTATCCAATATTCCCTGATTCTTTaGAAGCAAGTCTTCATATGCCTCTTGAACTCGTGT +
Preference number: 6 (lower is better)
Translates to: GIMGCIQYSLIL*KQVFICLLNSC
Trigger: ACACGAGTTCAAGAGGCATATGAAGACTTGCTTCAAAAGAATCAGGGAATATTGGATACAGCCCATAATGCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000111600.11
ENSMUST00000111603.10
ENSMUST00000181401.8
ENSMUST00000181709.2