Pregenerated sensors for RPF2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038510Ensembl transcript IDs: ENSMUST00000045114.13, ENSMUST00000183309.8
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TATAACCGACTCCATAATGTCTTTTGGCCACACCCACACTGTGACATACATGTGACAATATGCTGTATATaGTGGTACCTGCCTATAATC | + |
|
Preference number: 2 (lower is better) Translates to: YNRLHNVFWPHPHCDIHVTICCI*WYLPII Trigger: GATTATAGGCAGGTACCACCATATACAGCATATTGT...CACATGTATGTCACAGTGTGGGTGTGGCCAAAAGACATTATGGAGTCGGTTATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045114.13 |
||
| 3UTR CCA 72 bp | CTGTATATGGTGGTACCTGCCTATAATCACAGCACGTaGAAGGCTGAGACCAGCCCGGGCTATAGTGTGAAA | + |
|
Preference number: 3 (lower is better) Translates to: LYMVVPAYNHST*KAETSPGYSVK Trigger: TTTCACACTATAGCCCGGGCTGGTCTCAGCCTTCCACGTGCTGTGATTATAGGCAGGTACCACCATATACAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045114.13 ENSMUST00000183309.8 |
||
| CDS-3UTR GCA 90 bp | ATGGTGGTACCTGCCTATAATCACAGCACGTGGAAGGCTGAGACCAGCCCGGGCGTCTACTCCATTCTCTaGAGGTCGCTTCTTCAACCC | + |
|
Preference number: 4 (lower is better) Translates to: MVVPAYNHSTWKAETSPGVYSIL*RSLLQP Trigger: GGGTTGAAGAAGCGACCTGCAGAGAATGGAGTAGAC...GCCCGGGCTGGTCTCAGCCTTCCACGTGCTGTGATTATAGGCAGGTACCACCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045114.13 ENSMUST00000183309.8 |
||
| CDS-3UTR CCA 90 bp | TACCTGCCTATAATCACAGCACGTGGAAGGCTGAGACCAGCCCGGGCTATAGTGATTCTTTCTCTTCTTTaGCTTGAGAGCCTTGGGCAC | + |
|
Preference number: 4 (lower is better) Translates to: YLPIITARGRLRPARAIVILSLL*LESLGH Trigger: GTGCCCAAGGCTCTCAAGCCAAAGAAGAGAAAGAAT...CACTATAGCCCGGGCTGGTCTCAGCCTTCCACGTGCTGTGATTATAGGCAGGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045114.13 ENSMUST00000183309.8 |
||
| CDS-3UTR GCA 90 bp | TACCTGCCTATAATCACAGCACGTGGAAGGCTGAGACCAGCCCGGGCTATAGTGTCCTCGTTTGTAGTTTaGTTAAGTCTTGCTTTTGCA | + |
|
Preference number: 4 (lower is better) Translates to: YLPIITARGRLRPARAIVSSFVV*LSLAFA Trigger: TGCAAAAGCAAGACTTAAGCAAACTACAAACGAGGA...CACTATAGCCCGGGCTGGTCTCAGCCTTCCACGTGCTGTGATTATAGGCAGGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045114.13 ENSMUST00000183309.8 |
||
| CDS-3UTR GCA 90 bp | TATAACCGACTCCATAATGTCTTTTGGCCACACCCACACTGTGACATACATGTGGTCTACTCCATTCTCTaGAGGTCGCTTCTTCAACCC | + |
|
Preference number: 4 (lower is better) Translates to: YNRLHNVFWPHPHCDIHVVYSIL*RSLLQP Trigger: GGGTTGAAGAAGCGACCTGCAGAGAATGGAGTAGAC...CACATGTATGTCACAGTGTGGGTGTGGCCAAAAGACATTATGGAGTCGGTTATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045114.13 |
||
| CDS-3UTR CCA 90 bp | ACCGACTCCATAATGTCTTTTGGCCACACCCACACTGTGACATACATGTGCACAATTCTTTCTCTTCTTTaGCTTGAGAGCCTTGGGCAC | + |
|
Preference number: 4 (lower is better) Translates to: TDSIMSFGHTHTVTYMCTILSLL*LESLGH Trigger: GTGCCCAAGGCTCTCAAGCCAAAGAAGAGAAAGAAT...TGTGCACATGTATGTCACAGTGTGGGTGTGGCCAAAAGACATTATGGAGTCGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045114.13 |
||
| CDS-3UTR GCA 90 bp | ACCGACTCCATAATGTCTTTTGGCCACACCCACACTGTGACATACATGTGCACATCCTTCCAAATGTTGTaGCAAAAGTATCCTGAGAGA | + |
|
Preference number: 4 (lower is better) Translates to: TDSIMSFGHTHTVTYMCTSFQML*QKYPER Trigger: TCTCTCAGGATACTTTTGGCACAACATTTGGAAGGA...TGTGCACATGTATGTCACAGTGTGGGTGTGGCCAAAAGACATTATGGAGTCGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045114.13 |
||
| CDS-3UTR GCA 90 bp | ACAGGGTATAACCGACTCCATAATGTCTTTTGGCCACACCCACACTGTGACATAATATGGTTTCTTCAGTaGATACATGTCTCTGAGTAC | + |
|
Preference number: 4 (lower is better) Translates to: TGYNRLHNVFWPHPHCDIIWFLQ*IHVSEY Trigger: GTACTCAGAGACATGTATGCACTGAAGAAACCATAT...TATGTCACAGTGTGGGTGTGGCCAAAAGACATTATGGAGTCGGTTATACCCTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045114.13 |
||
| CDS-3UTR GCA 90 bp | GTAGAGCAATTCTCTTTAGTAAACAACCATAAGAAAGTGCTCGTAGTCAGTCAGTCCTTCCAAATGTTGTaGCAAAAGTATCCTGAGAGA | + |
|
Preference number: 4 (lower is better) Translates to: VEQFSLVNNHKKVLVVSQSFQML*QKYPER Trigger: TCTCTCAGGATACTTTTGGCACAACATTTGGAAGGA...CTGACTGACTACGAGCACTTTCTTATGGTTGTTTACTAAAGAGAATTGCTCTAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045114.13 ENSMUST00000183309.8 |
||
| CDS-3UTR GCA 90 bp | GTAGAGCAATTCTCTTTAGTAAACAACCATAAGAAAGTGCTCGTAGTCAGTCAGATATGGTTTCTTCAGTaGATACATGTCTCTGAGTAC | + |
|
Preference number: 4 (lower is better) Translates to: VEQFSLVNNHKKVLVVSQIWFLQ*IHVSEY Trigger: GTACTCAGAGACATGTATGCACTGAAGAAACCATAT...CTGACTGACTACGAGCACTTTCTTATGGTTGTTTACTAAAGAGAATTGCTCTAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045114.13 ENSMUST00000183309.8 |
||
| CDS-3UTR CAA 90 bp | ATGGTGGTACCTGCCTATAATCACAGCACGTGGAAGGCTGAGACCAGCCCGGGCTTTCTCTTCTTTGGCTaGAGAGCCTTGGGCACTTTC | + |
|
Preference number: 5 (lower is better) Translates to: MVVPAYNHSTWKAETSPGFLFFG*RALGTF Trigger: GAAAGTGCCCAAGGCTCTCAAGCCAAAGAAGAGAAA...GCCCGGGCTGGTCTCAGCCTTCCACGTGCTGTGATTATAGGCAGGTACCACCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045114.13 ENSMUST00000183309.8 |
||
| CDS-3UTR CAA 90 bp | ACAGGGTATAACCGACTCCATAATGTCTTTTGGCCACACCCACACTGTGACATATTTGGCTTGAGAGCCTaGGGCACTTTCATGGACAGT | + |
|
Preference number: 5 (lower is better) Translates to: TGYNRLHNVFWPHPHCDIFGLRA*GTFMDS Trigger: ACTGTCCATGAAAGTGCCCAAGGCTCTCAAGCCAAA...TATGTCACAGTGTGGGTGTGGCCAAAAGACATTATGGAGTCGGTTATACCCTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045114.13 |
||
| CDS-3UTR CAA 90 bp | TTAATCCCCACAGGGTATAACCGACTCCATAATGTCTTTTGGCCACACCCACACTTTCTCTTCTTTGGCTaGAGAGCCTTGGGCACTTTC | + |
|
Preference number: 5 (lower is better) Translates to: LIPTGYNRLHNVFWPHPHFLFFG*RALGTF Trigger: GAAAGTGCCCAAGGCTCTCAAGCCAAAGAAGAGAAA...GTGTGGGTGTGGCCAAAAGACATTATGGAGTCGGTTATACCCTGTGGGGATTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045114.13 |
||
| CDS-3UTR CAA 90 bp | ACAGGGTATAACCGACTCCATAATGTCTTTTGGCCACACCCACACTGTGACATACATGTCTCTGAGTACTaGTGTCACGGTTGCATTTGC | + |
|
Preference number: 5 (lower is better) Translates to: TGYNRLHNVFWPHPHCDIHVSEY*CHGCIC Trigger: GCAAATGCAACCGTGACACAAGTACTCAGAGACATG...TATGTCACAGTGTGGGTGTGGCCAAAAGACATTATGGAGTCGGTTATACCCTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045114.13 |
||
| CDS-3UTR CAA 90 bp | TTAATCCCCACAGGGTATAACCGACTCCATAATGTCTTTTGGCCACACCCACACAGCAGTCTGACTTCTTaGAAAAGAACTCCAGTGACG | + |
|
Preference number: 5 (lower is better) Translates to: LIPTGYNRLHNVFWPHPHSSLTS*KRTPVT Trigger: CGTCACTGGAGTTCTTTTCAAAGAAGTCAGACTGCT...GTGTGGGTGTGGCCAAAAGACATTATGGAGTCGGTTATACCCTGTGGGGATTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000045114.13 |
||
| CDS-3UTR CAA 90 bp | TTAATCCCCACAGGGTATAACCGACTCCATAATGTCTTTTGGCCACACCCACACCTATTACTAGGTTATTaGGCCTCTTCTTGTTATGGG | + |
|
Preference number: 5 (lower is better) Translates to: LIPTGYNRLHNVFWPHPHLLLGY*ASSCYG Trigger: CCCATAACAAGAAGAGGCCAAATAACCTAGTAATAG...GTGTGGGTGTGGCCAAAAGACATTATGGAGTCGGTTATACCCTGTGGGGATTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045114.13 |
||
| CDS-3UTR CAA 90 bp | GTAGAGCAATTCTCTTTAGTAAACAACCATAAGAAAGTGCTCGTAGTCAGTCAGTTTGGCTTGAGAGCCTaGGGCACTTTCATGGACAGT | + |
|
Preference number: 5 (lower is better) Translates to: VEQFSLVNNHKKVLVVSQFGLRA*GTFMDS Trigger: ACTGTCCATGAAAGTGCCCAAGGCTCTCAAGCCAAA...CTGACTGACTACGAGCACTTTCTTATGGTTGTTTACTAAAGAGAATTGCTCTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045114.13 ENSMUST00000183309.8 |
||
| CDS-3UTR CAA 90 bp | GTAGAGCAATTCTCTTTAGTAAACAACCATAAGAAAGTGCTCGTAGTCAGTCAGCATGTCTCTGAGTACTaGTGTCACGGTTGCATTTGC | + |
|
Preference number: 5 (lower is better) Translates to: VEQFSLVNNHKKVLVVSQHVSEY*CHGCIC Trigger: GCAAATGCAACCGTGACACAAGTACTCAGAGACATG...CTGACTGACTACGAGCACTTTCTTATGGTTGTTTACTAAAGAGAATTGCTCTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045114.13 ENSMUST00000183309.8 |
||
| CDS-3UTR CAA 90 bp | GTAGAGCAATTCTCTTTAGTAAACAACCATAAGAAAGTGCTCGTAGTCAGTCAGAGCAGTCTGACTTCTTaGAAAAGAACTCCAGTGACG | + |
|
Preference number: 5 (lower is better) Translates to: VEQFSLVNNHKKVLVVSQSSLTS*KRTPVT Trigger: CGTCACTGGAGTTCTTTTCAAAGAAGTCAGACTGCT...CTGACTGACTACGAGCACTTTCTTATGGTTGTTTACTAAAGAGAATTGCTCTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045114.13 ENSMUST00000183309.8 |
||