Pregenerated sensors for RPF1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028187Ensembl transcript IDs: ENSMUST00000029838.11, ENSMUST00000199079.2, ENSMUST00000199174.2
Found 95 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAGCTCTCAGGTAATGCAGCAGAACCACTGACGGGCTTAAGAGACTaGAGCTGCGGCAGCCCGGTGGGTCAGGGTTTGCGATCCTTCCAT | + |
|
Preference number: 1 (lower is better) Translates to: QLSGNAAEPLTGLRD*SCGSPVGQGLRSFH Trigger: ATGGAAGGATCGCAAACCCTGACCCACCGGGCTGCCGCAGCTTCAGTCTCTTAAGCCCGTCAGTGGTTCTGCTGCATTACCTGAGAGCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199174.2 |
||
| 3UTR TCA 90 bp | CATGGTGTCACCTGGGCCAGCGCTGTCATGCTCCTCCATTCCAAATaGCTACTCCTCTGCCTCATTCATTACCCCTTCCCATGCAGACCA | + |
|
Preference number: 1 (lower is better) Translates to: HGVTWASAVMLLHSK*LLLCLIHYPFPCRP Trigger: TGGTCTGCATGGGAAGGGGTAATGAATGAGGCAGAGGAGTAGTCATTTGGAATGGAGGAGCATGACAGCGCTGGCCCAGGTGACACCATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199079.2 |
||
| 3UTR CCA 90 bp | AGGCTGAAGGCTGGCCCTACAGTGCGAGTGTGTGGTGAAACAGGATaGGGAATGTTTCAGAGAAAAGGATGTCTGTCAGGCAGTGCAGGC | + |
|
Preference number: 1 (lower is better) Translates to: RLKAGPTVRVCGETG*GMFQRKGCLSGSAG Trigger: GCCTGCACTGCCTGACAGACATCCTTTTCTCTGAAACATTCCCCATCCTGTTTCACCACACACTCGCACTGTAGGGCCAGCCTTCAGCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199079.2 |
||
| 3UTR TCA 90 bp | AAACAGGCTAACTTCAGTGACCTGTGTAACTGCTCCAAGTCCCAGTaGCCGGCCCTCCAAGACTGGCGTATTAAGTCAGGGTTATACAAG | + |
|
Preference number: 1 (lower is better) Translates to: KQANFSDLCNCSKSQ*PALQDWRIKSGLYK Trigger: CTTGTATAACCCTGACTTAATACGCCAGTCTTGGAGGGCCGGTCACTGGGACTTGGAGCAGTTACACAGGTCACTGAAGTTAGCCTGTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029838.11 |
||
| 3UTR TCA 90 bp | CCTGAACAGTCGGTCGAGAGGTCTAGTTTCTATGTGCTGGGAGTTTaGGGTGAGGAGGTTAAAGTACAAAATGGAAAGGCTGTGCTGCTC | + |
|
Preference number: 1 (lower is better) Translates to: PEQSVERSSFYVLGV*GEEVKVQNGKAVLL Trigger: GAGCAGCACAGCCTTTCCATTTTGTACTTTAACCTCCTCACCTCAAACTCCCAGCACATAGAAACTAGACCTCTCGACCGACTGTTCAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199174.2 |
||
| 3UTR GCA 90 bp | AACAGGATGGGGAATGTTTCAGAGAAAAGGATGTCTGTCAGGCAGTaGAGGCTTTCTGAAAGCTACGTGTGCTATCACTTGTGCACCTAT | + |
|
Preference number: 1 (lower is better) Translates to: NRMGNVSEKRMSVRQ*RLSESYVCYHLCTY Trigger: ATAGGTGCACAAGTGATAGCACACGTAGCTTTCAGAAAGCCTGCACTGCCTGACAGACATCCTTTTCTCTGAAACATTCCCCATCCTGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199079.2 |
||
| 3UTR-3UTR CCA 90 bp | GTGGAATTTCCTTCGACTTGTATCCATTTCCCGTGGCTGAAAATTAAAGGGGGAGCTGCGGCAGCCCGGTaGGTCAGGGTTTGCGATCCT | + |
|
Preference number: 2 (lower is better) Translates to: VEFPSTCIHFPWLKIKGGAAAAR*VRVCDP Trigger: AGGATCGCAAACCCTGACCCACCGGGCTGCCGCAGC...TCCCCCTTTAATTTTCAGCCACGGGAAATGGATACAAGTCGAAGGAAATTCCAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000199174.2 |
||
| 3UTR-3UTR TCA 90 bp | ATGTCTGTTTCAGTAACGGAGAAGAGGCTGAAGGCTGGCCCTACAGTGCGAGTGCATCCATTCTGGAAGTaGTGGGAAGCCTTTTCCTAT | + |
|
Preference number: 2 (lower is better) Translates to: MSVSVTEKRLKAGPTVRVHPFWK*WEAFSY Trigger: ATAGGAAAAGGCTTCCCATCACTTCCAGAATGGATG...CACTCGCACTGTAGGGCCAGCCTTCAGCCTCTTCTCCGTTACTGAAACAGACAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199079.2 |
||
| 3UTR-3UTR GCA 90 bp | ACAGGATGGGGAATGTTTCAGAGAAAAGGATGTCTGTCAGGCAGTGCAGGCTTTCATTACCCCTTCCCATaGAGACCATGCTCAAGCTTC | + |
|
Preference number: 2 (lower is better) Translates to: TGWGMFQRKGCLSGSAGFHYPFP*RPCSSF Trigger: GAAGCTTGAGCATGGTCTGCATGGGAAGGGGTAATG...AAAGCCTGCACTGCCTGACAGACATCCTTTTCTCTGAAACATTCCCCATCCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000199079.2 |
||
| 3UTR-3UTR GCA 90 bp | ATGTCTGTTTCAGTAACGGAGAAGAGGCTGAAGGCTGGCCCTACAGTGCGAGTGTCTGAAAGCTACGTGTaGTATCACTTGTGCACCTAT | + |
|
Preference number: 2 (lower is better) Translates to: MSVSVTEKRLKAGPTVRVSESYV*YHLCTY Trigger: ATAGGTGCACAAGTGATAGCACACGTAGCTTTCAGA...CACTCGCACTGTAGGGCCAGCCTTCAGCCTCTTCTCCGTTACTGAAACAGACAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199079.2 |
||
| 3UTR-3UTR CCA 90 bp | AGGCTAACTTCAGTGACCTGTGTAACTGCTCCAAGTCCCAGTGACCGGCCCTCCAGCCTAACAGTCCTTTaGGAATGCAAATTAGAAAGT | + |
|
Preference number: 2 (lower is better) Translates to: RLTSVTCVTAPSPSDRPSSLTVL*ECKLES Trigger: ACTTTCTAATTTGCATTCCCAAAGGACTGTTAGGCT...GGAGGGCCGGTCACTGGGACTTGGAGCAGTTACACAGGTCACTGAAGTTAGCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029838.11 |
||
| 3UTR-3UTR CCA 90 bp | ATGTCTGTCAGGCAGTGCAGGCTTTCTGAAAGCTACGTGTGCTATCACTTGTGCCCTTGTCGTTCTATTTaGGGAAGCTGTGATACAGGC | + |
|
Preference number: 2 (lower is better) Translates to: MSVRQCRLSESYVCYHLCPCRSI*GSCDTG Trigger: GCCTGTATCACAGCTTCCCCAAATAGAACGACAAGG...GCACAAGTGATAGCACACGTAGCTTTCAGAAAGCCTGCACTGCCTGACAGACAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199079.2 |
||
| 3UTR-3UTR TCA 90 bp | AAAGGGTGTTTCATTGAATTACCAAGTTTTTCAAGACAGGCCAATCCAGCAAAAACGGGCTTAAGAGACTaGAGCTGCGGCAGCCCGGTG | + |
|
Preference number: 2 (lower is better) Translates to: KGCFIELPSFSRQANPAKTGLRD*SCGSPV Trigger: CACCGGGCTGCCGCAGCTTCAGTCTCTTAAGCCCGT...TTTTGCTGGATTGGCCTGTCTTGAAAAACTTGGTAATTCAATGAAACACCCTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000199174.2 |
||
| 3UTR-3UTR TCA 90 bp | AAAAGGATGTCTGTCAGGCAGTGCAGGCTTTCTGAAAGCTACGTGTGCTATCACTCATCTCCTAGATACTaGGATAATAGGCCCTGTTCA | + |
|
Preference number: 2 (lower is better) Translates to: KRMSVRQCRLSESYVCYHSSPRY*DNRPCS Trigger: TGAACAGGGCCTATTATCTCAGTATCTAGGAGATGA...GTGATAGCACACGTAGCTTTCAGAAAGCCTGCACTGCCTGACAGACATCCTTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199079.2 |
||
| 3UTR-3UTR TCA 90 bp | AAAAGGATGTCTGTCAGGCAGTGCAGGCTTTCTGAAAGCTACGTGTGCTATCACCATCTGTCTCAGATGTaGGACTTACAGGAAAAGTTT | + |
|
Preference number: 2 (lower is better) Translates to: KRMSVRQCRLSESYVCYHHLSQM*DLQEKF Trigger: AAACTTTTCCTGTAAGTCTCACATCTGAGACAGATG...GTGATAGCACACGTAGCTTTCAGAAAGCCTGCACTGCCTGACAGACATCCTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199079.2 |
||
| 3UTR-3UTR CCA 90 bp | AAACAGGATGGGGAATGTTTCAGAGAAAAGGATGTCTGTCAGGCAGTGCAGGCTTCAACAGAAATACCTTaGAGTCAGATGACATCTGTC | + |
|
Preference number: 2 (lower is better) Translates to: KQDGECFREKDVCQAVQASTEIP*SQMTSV Trigger: GACAGATGTCATCTGACTCCAAGGTATTTCTGTTGA...AGCCTGCACTGCCTGACAGACATCCTTTTCTCTGAAACATTCCCCATCCTGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199079.2 |
||
| 3UTR-3UTR TCA 90 bp | TTCATCTCAACAGAAATACCTTGGAGTCAGATGACATCTGTCTCAGATGTGAGACTCCTCCATTCCAAATaGCTACTCCTCTGCCTCATT | + |
|
Preference number: 2 (lower is better) Translates to: FISTEIPWSQMTSVSDVRLLHSK*LLLCLI Trigger: AATGAGGCAGAGGAGTAGTCATTTGGAATGGAGGAG...TCTCACATCTGAGACAGATGTCATCTGACTCCAAGGTATTTCTGTTGAGATGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199079.2 |
||
| 3UTR-3UTR CCA 90 bp | ATTGAATTACCAAGTTTTTCAAGACAGGCCAATCCAGCAAAATTCAGTACTGCTCTAGTTTCTATGTGCTaGGAGTTTGAGGTGAGGAGG | + |
|
Preference number: 2 (lower is better) Translates to: IELPSFSRQANPAKFSTALVSMC*EFEVRR Trigger: CCTCCTCACCTCAAACTCCCAGCACATAGAAACTAG...AGCAGTACTGAATTTTGCTGGATTGGCCTGTCTTGAAAAACTTGGTAATTCAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000199174.2 |
||
| 3UTR-3UTR TCA 90 bp | CTCCAAGACTGGCGTATTAAGTCAGGGTTATACAAGCCTTTTTCTAGCCTAACATCAGCTTATCTGAAATaGCAGCAAGTTTTAGGACTT | + |
|
Preference number: 2 (lower is better) Translates to: LQDWRIKSGLYKPFSSLTSAYLK*QQVLGL Trigger: AAGTCCTAAAACTTGCTGTCATTTCAGATAAGCTGA...TGTTAGGCTAGAAAAAGGCTTGTATAACCCTGACTTAATACGCCAGTCTTGGAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029838.11 |
||
| 3UTR-3UTR GCA 90 bp | TTCATCTCAACAGAAATACCTTGGAGTCAGATGACATCTGTCTCAGATGTGAGATTTAGCCATAGCACCTaGCTGATAAATGTTTTGATA | + |
|
Preference number: 2 (lower is better) Translates to: FISTEIPWSQMTSVSDVRFSHST*LINVLI Trigger: TATCAAAACATTTATCAGGCAGGTGCTATGGCTAAA...TCTCACATCTGAGACAGATGTCATCTGACTCCAAGGTATTTCTGTTGAGATGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199079.2 |
||
| 3UTR-3UTR CCA 90 bp | ATTGAATTACCAAGTTTTTCAAGACAGGCCAATCCAGCAAAATTCAGTACTGCTGACACTACATCATGTTaGTACTTTCTAGTTCATGGG | + |
|
Preference number: 2 (lower is better) Translates to: IELPSFSRQANPAKFSTADTTSC*YFLVHG Trigger: CCCATGAACTAGAAAGTACCAACATGATGTAGTGTC...AGCAGTACTGAATTTTGCTGGATTGGCCTGTCTTGAAAAACTTGGTAATTCAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000199174.2 |
||
| 3UTR TCA 72 bp | GGTAATGCAGCAGAACCACTGACGGGCTTAAGAGACTaGAGCTGCGGCAGCCCGGTGGGTCAGGGTTTGCGA | + |
|
Preference number: 3 (lower is better) Translates to: GNAAEPLTGLRD*SCGSPVGQGLR Trigger: TCGCAAACCCTGACCCACCGGGCTGCCGCAGCTTCAGTCTCTTAAGCCCGTCAGTGGTTCTGCTGCATTACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199174.2 |
||
| 3UTR CCA 72 bp | TTCCTGAGAGCGGAAGATGAAGCGATACCAAAGTCATaGTGTCACCTGGGCCAGCGCTGTCATGCTCCTCCA | + |
|
Preference number: 3 (lower is better) Translates to: FLRAEDEAIPKS*CHLGQRCHAPP Trigger: TGGAGGAGCATGACAGCGCTGGCCCAGGTGACACCATGACTTTGGTATCGCTTCATCTTCCGCTCTCAGGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199079.2 |
||
| 3UTR TCA 72 bp | AACTTCAGTGACCTGTGTAACTGCTCCAAGTCCCAGTaGCCGGCCCTCCAAGACTGGCGTATTAAGTCAGGG | + |
|
Preference number: 3 (lower is better) Translates to: NFSDLCNCSKSQ*PALQDWRIKSG Trigger: CCCTGACTTAATACGCCAGTCTTGGAGGGCCGGTCACTGGGACTTGGAGCAGTTACACAGGTCACTGAAGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029838.11 |
||
| 3UTR GCA 72 bp | ACCAAAGTCATGGTGTCACCTGGGCCAGCGCTGTCATaGTCCTCCATTCCAAATGACTACTCCTCTGCCTCA | + |
|
Preference number: 3 (lower is better) Translates to: TKVMVSPGPALS*SSIPNDYSSAS Trigger: TGAGGCAGAGGAGTAGTCATTTGGAATGGAGGAGCATGACAGCGCTGGCCCAGGTGACACCATGACTTTGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199079.2 |
||
| 3UTR TCA 72 bp | GAGGCTGAAGGCTGGCCCTACAGTGCGAGTGTGTGGTaGAACAGGATGGGGAATGTTTCAGAGAAAAGGATG | + |
|
Preference number: 3 (lower is better) Translates to: EAEGWPYSASVW*NRMGNVSEKRM Trigger: CATCCTTTTCTCTGAAACATTCCCCATCCTGTTTCACCACACACTCGCACTGTAGGGCCAGCCTTCAGCCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199079.2 |
||
| 3UTR-3UTR CAA 90 bp | ATGGTGTCACCTGGGCCAGCGCTGTCATGCTCCTCCATTCCAAATGACTACTCCAATTGGCAGAACTATTaGTCTGAACTATGGCTGCTT | + |
|
Preference number: 3 (lower is better) Translates to: MVSPGPALSCSSIPNDYSNWQNY*SELWLL Trigger: AAGCAGCCATAGTTCAGACAAATAGTTCTGCCAATT...GGAGTAGTCATTTGGAATGGAGGAGCATGACAGCGCTGGCCCAGGTGACACCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199079.2 |
||
| 3UTR GCA 72 bp | GGGAATGTTTCAGAGAAAAGGATGTCTGTCAGGCAGTaGAGGCTTTCTGAAAGCTACGTGTGCTATCACTTG | + |
|
Preference number: 3 (lower is better) Translates to: GNVSEKRMSVRQ*RLSESYVCYHL Trigger: CAAGTGATAGCACACGTAGCTTTCAGAAAGCCTGCACTGCCTGACAGACATCCTTTTCTCTGAAACATTCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199079.2 |
||
| 3UTR GCA 72 bp | ACCCTGAACAGTCGGTCGAGAGGTCTAGTTTCTATGTaGTGGGAGTTTGAGGTGAGGAGGTTAAAGTACAAA | + |
|
Preference number: 3 (lower is better) Translates to: TLNSRSRGLVSM*WEFEVRRLKYK Trigger: TTTGTACTTTAACCTCCTCACCTCAAACTCCCAGCACATAGAAACTAGACCTCTCGACCGACTGTTCAGGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199174.2 |
||
| 3UTR TCA 72 bp | AGAGAAAAGGATGTCTGTCAGGCAGTGCAGGCTTTCTaGAAGCTACGTGTGCTATCACTTGTGCACCTATAT | + |
|
Preference number: 3 (lower is better) Translates to: REKDVCQAVQAF*KLRVLSLVHLY Trigger: ATATAGGTGCACAAGTGATAGCACACGTAGCTTTCAGAAAGCCTGCACTGCCTGACAGACATCCTTTTCTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199079.2 |
||
| 3UTR TCA 72 bp | TCGGTCGAGAGGTCTAGTTTCTATGTGCTGGGAGTTTaGGGTGAGGAGGTTAAAGTACAAAATGGAAAGGCT | + |
|
Preference number: 3 (lower is better) Translates to: SVERSSFYVLGV*GEEVKVQNGKA Trigger: AGCCTTTCCATTTTGTACTTTAACCTCCTCACCTCAAACTCCCAGCACATAGAAACTAGACCTCTCGACCGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199174.2 |
||
| 3UTR CCA 72 bp | CTGAACAGTCGGTCGAGAGGTCTAGTTTCTATGTGCTaGGAGTTTGAGGTGAGGAGGTTAAAGTACAAAATG | + |
|
Preference number: 3 (lower is better) Translates to: LNSRSRGLVSMC*EFEVRRLKYKM Trigger: CATTTTGTACTTTAACCTCCTCACCTCAAACTCCCAGCACATAGAAACTAGACCTCTCGACCGACTGTTCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199174.2 |
||
| 3UTR-3UTR CAA 90 bp | AGGATGTCTGTCAGGCAGTGCAGGCTTTCTGAAAGCTACGTGTGCTATCACTTGACAGGAAAAGTTTCATaGTTCCTAGCAACCAAAACA | + |
|
Preference number: 3 (lower is better) Translates to: RMSVRQCRLSESYVCYHLTGKVS*FLATKT Trigger: TGTTTTGGTTGCTAGGAACAATGAAACTTTTCCTGT...CAAGTGATAGCACACGTAGCTTTCAGAAAGCCTGCACTGCCTGACAGACATCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199079.2 |
||
| 3UTR-3UTR CAA 90 bp | AAAAGGATGTCTGTCAGGCAGTGCAGGCTTTCTGAAAGCTACGTGTGCTATCACTATGAAAAGAATGTGTaGTCCTGTGCAGAACAGAAC | + |
|
Preference number: 3 (lower is better) Translates to: KRMSVRQCRLSESYVCYHYEKNV*SCAEQN Trigger: GTTCTGTTCTGCACAGGACAACACATTCTTTTCATA...GTGATAGCACACGTAGCTTTCAGAAAGCCTGCACTGCCTGACAGACATCCTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199079.2 |
||
| 3UTR-3UTR CAA 90 bp | TGTTTCATTGAATTACCAAGTTTTTCAAGACAGGCCAATCCAGCAAAATTCAGTCTCCTAGCTAGGCCTTaGGTGAGTCCAGCAGCAGCT | + |
|
Preference number: 3 (lower is better) Translates to: CFIELPSFSRQANPAKFSLLARP*VSPAAA Trigger: AGCTGCTGCTGGACTCACCAAAGGCCTAGCTAGGAG...ACTGAATTTTGCTGGATTGGCCTGTCTTGAAAAACTTGGTAATTCAATGAAACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000199174.2 |
||
| 3UTR CCA 72 bp | GCAAAATTCAGTACTGCTCCCCTAGTCCTTTATAAGTaGAATTTCCTTCGACTTGTATCCATTTCCCGTGGC | + |
|
Preference number: 3 (lower is better) Translates to: AKFSTAPLVLYK*NFLRLVSISRG Trigger: GCCACGGGAAATGGATACAAGTCGAAGGAAATTCCACTTATAAAGGACTAGGGGAGCAGTACTGAATTTTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199174.2 |
||
| 3UTR CCA 72 bp | ATAAAGTCCATGTCCCTCGAACAATGTTCTGTTAATTaGCAGAACTATTTGTCTGAACTATGGCTGCTTGAC | + |
|
Preference number: 3 (lower is better) Translates to: IKSMSLEQCSVN*QNYLSELWLLD Trigger: GTCAAGCAGCCATAGTTCAGACAAATAGTTCTGCCAATTAACAGAACATTGTTCGAGGGACATGGACTTTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199079.2 |
||
| CDS-3UTR TCA 90 bp | AGGCTGGCCCTACAGTGCGAGTGTGTGGTGAAACAGGATGGGGAATGTTTCAGAGCTGTTTCCACCGCGTaGACATCAAGTGTCGCCGCT | + |
|
Preference number: 4 (lower is better) Translates to: RLALQCECVVKQDGECFRAVSTA*TSSVAA Trigger: AGCGGCGACACTTGATGTTCACGCGGTGGAAACAGC...TCTGAAACATTCCCCATCCTGTTTCACCACACACTCGCACTGTAGGGCCAGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199079.2 |
||
| CDS-3UTR GCA 90 bp | ACTTCAGTGACCTGTGTAACTGCTCCAAGTCCCAGTGACCGGCCCTCCAAGACTTTTTCCTTCCGCTGCTaGTGTTTCCACCGCGTGAAC | + |
|
Preference number: 4 (lower is better) Translates to: TSVTCVTAPSPSDRPSKTFSFRC*CFHRVN Trigger: GTTCACGCGGTGGAAACAGCAGCAGCGGAAGGAAAA...AGTCTTGGAGGGCCGGTCACTGGGACTTGGAGCAGTTACACAGGTCACTGAAGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029838.11 |
||
| CDS-3UTR CCA 90 bp | AAAGTCATGGTGTCACCTGGGCCAGCGCTGTCATGCTCCTCCATTCCAAATGACGGTTGTCAATGGTCTTaGGAACAGGCTTTGGTGGAG | + |
|
Preference number: 4 (lower is better) Translates to: KVMVSPGPALSCSSIPNDGCQWS*EQALVE Trigger: CTCCACCAAAGCCTGTTCCCAAGACCATTGACAACC...GTCATTTGGAATGGAGGAGCATGACAGCGCTGGCCCAGGTGACACCATGACTTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199079.2 |
||
| CDS-3UTR GCA 90 bp | AGGCTGGCCCTACAGTGCGAGTGTGTGGTGAAACAGGATGGGGAATGTTTCAGAATCAAGTGTCGCCGCTaGTTGTTCTTAATCTCCGAG | + |
|
Preference number: 4 (lower is better) Translates to: RLALQCECVVKQDGECFRIKCRR*LFLISE Trigger: CTCGGAGATTAAGAACAAGCAGCGGCGACACTTGAT...TCTGAAACATTCCCCATCCTGTTTCACCACACACTCGCACTGTAGGGCCAGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199079.2 |
||
| CDS-3UTR GCA 90 bp | AAACAGGATGGGGAATGTTTCAGAGAAAAGGATGTCTGTCAGGCAGTGCAGGCTTTTTCCTTCCGCTGCTaGTGTTTCCACCGCGTGAAC | + |
|
Preference number: 4 (lower is better) Translates to: KQDGECFREKDVCQAVQAFSFRC*CFHRVN Trigger: GTTCACGCGGTGGAAACAGCAGCAGCGGAAGGAAAA...AGCCTGCACTGCCTGACAGACATCCTTTTCTCTGAAACATTCCCCATCCTGTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000199079.2 |
||
| CDS-3UTR GCA 90 bp | GGAAGGAAGGAGCAAGAAAACAGGCTAACTTCAGTGACCTGTGTAACTGCTCCAAACTTTTCCTTCCGCTaGTGCTGTTTCCACCGCGTG | + |
|
Preference number: 4 (lower is better) Translates to: GRKEQENRLTSVTCVTAPNFSFR*CCFHRV Trigger: CACGCGGTGGAAACAGCAGCAGCGGAAGGAAAAGTT...TGGAGCAGTTACACAGGTCACTGAAGTTAGCCTGTTTTCTTGCTCCTTCCTTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029838.11 |
||
| CDS-3UTR CCA 90 bp | AAAAGGATGTCTGTCAGGCAGTGCAGGCTTTCTGAAAGCTACGTGTGCTATCACCGCGCTGGTTGTCAATaGTCTTGGGAACAGGCTTTG | + |
|
Preference number: 4 (lower is better) Translates to: KRMSVRQCRLSESYVCYHRAGCQ*SWEQAL Trigger: CAAAGCCTGTTCCCAAGACCATTGACAACCAGCGCG...GTGATAGCACACGTAGCTTTCAGAAAGCCTGCACTGCCTGACAGACATCCTTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199079.2 |
||
| CDS-3UTR TCA 90 bp | AAACAGGATGGGGAATGTTTCAGAGAAAAGGATGTCTGTCAGGCAGTGCAGGCTATCTGGTATAACTGTTaGGAGCTGCTCACAGAGTCG | + |
|
Preference number: 4 (lower is better) Translates to: KQDGECFREKDVCQAVQAIWYNC*ELLTES Trigger: CGACTCTGTGAGCAGCTCTCAACAGTTATACCAGAT...AGCCTGCACTGCCTGACAGACATCCTTTTCTCTGAAACATTCCCCATCCTGTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199079.2 |
||
| CDS-3UTR GCA 90 bp | ATGTCTGTTTCAGTAACGGAGAAGAGGCTGAAGGCTGGCCCTACAGTGCGAGTGGTCTGTGAAATCTCTTaGAATGCACTGTGGGATAAT | + |
|
Preference number: 4 (lower is better) Translates to: MSVSVTEKRLKAGPTVRVVCEIS*NALWDN Trigger: ATTATCCCACAGTGCATTGCAAGAGATTTCACAGAC...CACTCGCACTGTAGGGCCAGCCTTCAGCCTCTTCTCCGTTACTGAAACAGACAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199079.2 |
||
| CDS-3UTR TCA 90 bp | GGGTGTTTCATTGAATTACCAAGTTTTTCAAGACAGGCCAATCCAGCAAAATTCGCTGTTTCCACCGCGTaGACATCAAGTGTCGCCGCT | + |
|
Preference number: 4 (lower is better) Translates to: GCFIELPSFSRQANPAKFAVSTA*TSSVAA Trigger: AGCGGCGACACTTGATGTTCACGCGGTGGAAACAGC...GAATTTTGCTGGATTGGCCTGTCTTGAAAAACTTGGTAATTCAATGAAACACCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029838.11 |
||
| CDS-3UTR TCA 90 bp | CAGGCCAATCCAGCAAAATTCAGTACTGCTCCCCTAGTCCTTTATAAGTGGAATCGTGGTCCGAGTTCCTaGATTCCCACTTTCTTCTCA | + |
|
Preference number: 4 (lower is better) Translates to: QANPAKFSTAPLVLYKWNRGPSS*IPTFFS Trigger: TGAGAAGAAAGTGGGAATTCAGGAACTCGGACCACG...ATTCCACTTATAAAGGACTAGGGGAGCAGTACTGAATTTTGCTGGATTGGCCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199174.2 |
||
| CDS-3UTR TCA 90 bp | GTGGAATTTCCTTCGACTTGTATCCATTTCCCGTGGCTGAAAATTAAAGGGGGACTGCTCATTTTAAAATaGGCGGTTGGACCGTTTGGC | + |
|
Preference number: 4 (lower is better) Translates to: VEFPSTCIHFPWLKIKGGLLILK*AVGPFG Trigger: GCCAAACGGTCCAACCGCTCATTTTAAAATGAGCAG...TCCCCCTTTAATTTTCAGCCACGGGAAATGGATACAAGTCGAAGGAAATTCCAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000199174.2 |
||
| CDS-3UTR GCA 90 bp | ACAGGATGGGGAATGTTTCAGAGAAAAGGATGTCTGTCAGGCAGTGCAGGCTTTATAACTGTTGAGAGCTaGTCACAGAGTCGAACTGTT | + |
|
Preference number: 4 (lower is better) Translates to: TGWGMFQRKGCLSGSAGFITVES*SQSRTV Trigger: AACAGTTCGACTCTGTGAGCAGCTCTCAACAGTTAT...AAAGCCTGCACTGCCTGACAGACATCCTTTTCTCTGAAACATTCCCCATCCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199079.2 |
||
| CDS-3UTR CCA 90 bp | TGCTGGGAGTTTGAGGTGAGGAGGTTAAAGTACAAAATGGAAAGGCTGTGCTGCAGCGGTTGGACCGTTTaGCAAATGACTCAAAATAAG | + |
|
Preference number: 4 (lower is better) Translates to: CWEFEVRRLKYKMERLCCSGWTV*QMTQNK Trigger: CTTATTTTGAGTCATTTGCCAAACGGTCCAACCGCT...GCAGCACAGCCTTTCCATTTTGTACTTTAACCTCCTCACCTCAAACTCCCAGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199174.2 |
||
| CDS-3UTR CCA 90 bp | GGGTGTTTCATTGAATTACCAAGTTTTTCAAGACAGGCCAATCCAGCAAAATTCCGCGCTGGTTGTCAATaGTCTTGGGAACAGGCTTTG | + |
|
Preference number: 4 (lower is better) Translates to: GCFIELPSFSRQANPAKFRAGCQ*SWEQAL Trigger: CAAAGCCTGTTCCCAAGACCATTGACAACCAGCGCG...GAATTTTGCTGGATTGGCCTGTCTTGAAAAACTTGGTAATTCAATGAAACACCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029838.11 |
||
| CDS-3UTR TCA 90 bp | GGGTGTTTCATTGAATTACCAAGTTTTTCAAGACAGGCCAATCCAGCAAAATTCCGTGGTCCGAGTTCCTaGATTCCCACTTTCTTCTCA | + |
|
Preference number: 4 (lower is better) Translates to: GCFIELPSFSRQANPAKFRGPSS*IPTFFS Trigger: TGAGAAGAAAGTGGGAATTCAGGAACTCGGACCACG...GAATTTTGCTGGATTGGCCTGTCTTGAAAAACTTGGTAATTCAATGAAACACCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029838.11 ENSMUST00000199174.2 |
||
| CDS-3UTR TCA 90 bp | TGCTGGGAGTTTGAGGTGAGGAGGTTAAAGTACAAAATGGAAAGGCTGTGCTGCTCAAAAGTGCCCTTCTaGAGAGATCGTAATTTTAAG | + |
|
Preference number: 4 (lower is better) Translates to: CWEFEVRRLKYKMERLCCSKVPF*RDRNFK Trigger: CTTAAAATTACGATCTCTTCAGAAGGGCACTTTTGA...GCAGCACAGCCTTTCCATTTTGTACTTTAACCTCCTCACCTCAAACTCCCAGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000199174.2 |
||
| CDS-3UTR CCA 90 bp | GGTAGCTGCTTCCATCTGGAAATAAGAGAGAGTTCCATTAAAAGAATCAAGAACGGTTGTCAATGGTCTTaGGAACAGGCTTTGGTGGAG | + |
|
Preference number: 4 (lower is better) Translates to: GSCFHLEIRESSIKRIKNGCQWS*EQALVE Trigger: CTCCACCAAAGCCTGTTCCCAAGACCATTGACAACC...GTTCTTGATTCTTTTAATGGAACTCTCTCTTATTTCCAGATGGAAGCAGCTACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029838.11 |
||
| CDS-3UTR CCA 90 bp | GGGTGTTTCATTGAATTACCAAGTTTTTCAAGACAGGCCAATCCAGCAAAATTCCCACCTCTTCATCATTaGGGTCTACTGTGGTCTCGT | + |
|
Preference number: 4 (lower is better) Translates to: GCFIELPSFSRQANPAKFPPLHH*GLLWSR Trigger: ACGAGACCACAGTAGACCCCAATGATGAAGAGGTGG...GAATTTTGCTGGATTGGCCTGTCTTGAAAAACTTGGTAATTCAATGAAACACCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029838.11 |
||
| CDS-3UTR TCA 90 bp | GGTAGCTGCTTCCATCTGGAAATAAGAGAGAGTTCCATTAAAAGAATCAAGAACCTGCTCATTTTAAAATaGGCGGTTGGACCGTTTGGC | + |
|
Preference number: 4 (lower is better) Translates to: GSCFHLEIRESSIKRIKNLLILK*AVGPFG Trigger: GCCAAACGGTCCAACCGCTCATTTTAAAATGAGCAG...GTTCTTGATTCTTTTAATGGAACTCTCTCTTATTTCCAGATGGAAGCAGCTACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029838.11 |
||
| CDS-3UTR CCA 90 bp | CTCCAAGACTGGCGTATTAAGTCAGGGTTATACAAGCCTTTTTCTAGCCTAACAAGCGGTTGGACCGTTTaGCAAATGACTCAAAATAAG | + |
|
Preference number: 4 (lower is better) Translates to: LQDWRIKSGLYKPFSSLTSGWTV*QMTQNK Trigger: CTTATTTTGAGTCATTTGCCAAACGGTCCAACCGCT...TGTTAGGCTAGAAAAAGGCTTGTATAACCCTGACTTAATACGCCAGTCTTGGAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029838.11 |
||
| CDS-3UTR TCA 90 bp | TCATTGAATTACCAAGTTTTTCAAGACAGGCCAATCCAGCAAAATTCAGTACTGATCTGGTATAACTGTTaGGAGCTGCTCACAGAGTCG | + |
|
Preference number: 4 (lower is better) Translates to: SLNYQVFQDRPIQQNSVLIWYNC*ELLTES Trigger: CGACTCTGTGAGCAGCTCTCAACAGTTATACCAGAT...CAGTACTGAATTTTGCTGGATTGGCCTGTCTTGAAAAACTTGGTAATTCAATGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029838.11 |
||
| CDS-3UTR TCA 90 bp | CATTCACGGTTATACCAAGAGGGTAGCTGCTTCCATCTGGAAATAAGAGAGAGTTCAAAAGTGCCCTTCTaGAGAGATCGTAATTTTAAG | + |
|
Preference number: 4 (lower is better) Translates to: HSRLYQEGSCFHLEIRESSKVPF*RDRNFK Trigger: CTTAAAATTACGATCTCTTCAGAAGGGCACTTTTGA...ACTCTCTCTTATTTCCAGATGGAAGCAGCTACCCTCTTGGTATAACCGTGAATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029838.11 |
||
| CDS-3UTR GCA 90 bp | ATTGAATTACCAAGTTTTTCAAGACAGGCCAATCCAGCAAAATTCAGTACTGCTATCAAGTGTCGCCGCTaGTTGTTCTTAATCTCCGAG | + |
|
Preference number: 4 (lower is better) Translates to: IELPSFSRQANPAKFSTAIKCRR*LFLISE Trigger: CTCGGAGATTAAGAACAAGCAGCGGCGACACTTGAT...AGCAGTACTGAATTTTGCTGGATTGGCCTGTCTTGAAAAACTTGGTAATTCAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029838.11 |
||
| CDS-3UTR TCA 90 bp | TTCATCTCAACAGAAATACCTTGGAGTCAGATGACATCTGTCTCAGATGTGAGAGAGACGTCTGTCTGTTaGAGTAAGAAGCAAATTCAT | + |
|
Preference number: 4 (lower is better) Translates to: FISTEIPWSQMTSVSDVRETSVC*SKKQIH Trigger: ATGAATTTGCTTCTTACTTCAACAGACAGACGTCTC...TCTCACATCTGAGACAGATGTCATCTGACTCCAAGGTATTTCTGTTGAGATGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199079.2 |
||
| CDS-3UTR TCA 90 bp | GGGTGTTTCATTGAATTACCAAGTTTTTCAAGACAGGCCAATCCAGCAAAATTCCCCATGAGGTCTATCTaGCGTTGTGATAAGAATCTT | + |
|
Preference number: 4 (lower is better) Translates to: GCFIELPSFSRQANPAKFPMRSI*RCDKNL Trigger: AAGATTCTTATCACAACGTCAGATAGACCTCATGGG...GAATTTTGCTGGATTGGCCTGTCTTGAAAAACTTGGTAATTCAATGAAACACCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029838.11 |
||
| CDS-3UTR TCA 90 bp | GCCAATCCAGCAAAATTCAGTACTGCTCCCCTAGTCCTTTATAAGTGGAATTTCCTTTCTTCTCACTCTTaGATATGTATCTGTGAAACC | + |
|
Preference number: 4 (lower is better) Translates to: ANPAKFSTAPLVLYKWNFLSSHS*ICICET Trigger: GGTTTCACAGATACATATTCAAGAGTGAGAAGAAAG...GAAATTCCACTTATAAAGGACTAGGGGAGCAGTACTGAATTTTGCTGGATTGGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199174.2 |
||
| CDS-3UTR GCA 90 bp | GAGGGTAGCTGCTTCCATCTGGAAATAAGAGAGAGTTCCATTAAAAGAATCAAGGTCTGTGAAATCTCTTaGAATGCACTGTGGGATAAT | + |
|
Preference number: 4 (lower is better) Translates to: EGSCFHLEIRESSIKRIKVCEIS*NALWDN Trigger: ATTATCCCACAGTGCATTGCAAGAGATTTCACAGAC...CTTGATTCTTTTAATGGAACTCTCTCTTATTTCCAGATGGAAGCAGCTACCCTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029838.11 |
||
| CDS-3UTR CCA 90 bp | TTCATTGAATTACCAAGTTTTTCAAGACAGGCCAATCCAGCAAAATTCAGTACTTGTATCCATTTCCCGTaGCTTGTGGACCCATTCGTA | + |
|
Preference number: 4 (lower is better) Translates to: FIELPSFSRQANPAKFSTCIHFP*LVDPFV Trigger: TACGAATGGGTCCACAAGCCACGGGAAATGGATACA...AGTACTGAATTTTGCTGGATTGGCCTGTCTTGAAAAACTTGGTAATTCAATGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029838.11 |
||
| CDS-3UTR TCA 90 bp | GGGTGTTTCATTGAATTACCAAGTTTTTCAAGACAGGCCAATCCAGCAAAATTCGAGACGTCTGTCTGTTaGAGTAAGAAGCAAATTCAT | + |
|
Preference number: 4 (lower is better) Translates to: GCFIELPSFSRQANPAKFETSVC*SKKQIH Trigger: ATGAATTTGCTTCTTACTTCAACAGACAGACGTCTC...GAATTTTGCTGGATTGGCCTGTCTTGAAAAACTTGGTAATTCAATGAAACACCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029838.11 |
||
| CDS-3UTR TCA 90 bp | GAGGGTAGCTGCTTCCATCTGGAAATAAGAGAGAGTTCCATTAAAAGAATCAAGCTTTCTTCTCACTCTTaGATATGTATCTGTGAAACC | + |
|
Preference number: 4 (lower is better) Translates to: EGSCFHLEIRESSIKRIKLSSHS*ICICET Trigger: GGTTTCACAGATACATATTCAAGAGTGAGAAGAAAG...CTTGATTCTTTTAATGGAACTCTCTCTTATTTCCAGATGGAAGCAGCTACCCTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029838.11 |
||
| 3UTR CAA 72 bp | TCCCTCGAACAATGTTCTGTTAATTGGCAGAACTATTaGTCTGAACTATGGCTGCTTGACTATTATATCTGC | + |
|
Preference number: 4 (lower is better) Translates to: SLEQCSVNWQNY*SELWLLDYYIC Trigger: GCAGATATAATAGTCAAGCAGCCATAGTTCAGACAAATAGTTCTGCCAATTAACAGAACATTGTTCGAGGGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199079.2 |
||
| CDS-3UTR TCA 90 bp | TTCATTGAATTACCAAGTTTTTCAAGACAGGCCAATCCAGCAAAATTCAGTACTGGACCGTTTGGCAAATaGCTCAAAATAAGTCCATTC | + |
|
Preference number: 4 (lower is better) Translates to: FIELPSFSRQANPAKFSTGPFGK*LKISPF Trigger: GAATGGACTTATTTTGAGTCATTTGCCAAACGGTCC...AGTACTGAATTTTGCTGGATTGGCCTGTCTTGAAAAACTTGGTAATTCAATGAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029838.11 |
||
| CDS-3UTR GCA 90 bp | TTCATTGAATTACCAAGTTTTTCAAGACAGGCCAATCCAGCAAAATTCAGTACTATAACTGTTGAGAGCTaGTCACAGAGTCGAACTGTT | + |
|
Preference number: 4 (lower is better) Translates to: FIELPSFSRQANPAKFSTITVES*SQSRTV Trigger: AACAGTTCGACTCTGTGAGCAGCTCTCAACAGTTAT...AGTACTGAATTTTGCTGGATTGGCCTGTCTTGAAAAACTTGGTAATTCAATGAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029838.11 |
||
| CDS-3UTR CCA 90 bp | TCATTGAATTACCAAGTTTTTCAAGACAGGCCAATCCAGCAAAATTCAGTACTGTTTAAAATGAGCGGTTaGACCGTTTGGCAAATGACT | + |
|
Preference number: 4 (lower is better) Translates to: SLNYQVFQDRPIQQNSVLFKMSG*TVWQMT Trigger: AGTCATTTGCCAAACGGTCCAACCGCTCATTTTAAA...CAGTACTGAATTTTGCTGGATTGGCCTGTCTTGAAAAACTTGGTAATTCAATGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000029838.11 ENSMUST00000199174.2 |
||
| CDS-3UTR CCA 90 bp | TGTTTCATTGAATTACCAAGTTTTTCAAGACAGGCCAATCCAGCAAAATTCAGTTTTAAAATGAGCGGTTaGACCGTTTGGCAAATGACT | + |
|
Preference number: 4 (lower is better) Translates to: CFIELPSFSRQANPAKFSFKMSG*TVWQMT Trigger: AGTCATTTGCCAAACGGTCCAACCGCTCATTTTAAA...ACTGAATTTTGCTGGATTGGCCTGTCTTGAAAAACTTGGTAATTCAATGAAACA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000029838.11 ENSMUST00000199174.2 |
||
| CDS-3UTR CAA 90 bp | ACTTCAGTGACCTGTGTAACTGCTCCAAGTCCCAGTGACCGGCCCTCCAAGACTCGCGGCCGCAGCCTCTaGAGGCTCTTCAGCGGCAGC | + |
|
Preference number: 5 (lower is better) Translates to: TSVTCVTAPSPSDRPSKTRGRSL*RLFSGS Trigger: GCTGCCGCTGAAGAGCCTCAAGAGGCTGCGGCCGCG...AGTCTTGGAGGGCCGGTCACTGGGACTTGGAGCAGTTACACAGGTCACTGAAGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029838.11 |
||
| CDS-3UTR CAA 90 bp | AAAAGGATGTCTGTCAGGCAGTGCAGGCTTTCTGAAAGCTACGTGTGCTATCACCGCGGCCGCAGCCTCTaGAGGCTCTTCAGCGGCAGC | + |
|
Preference number: 5 (lower is better) Translates to: KRMSVRQCRLSESYVCYHRGRSL*RLFSGS Trigger: GCTGCCGCTGAAGAGCCTCAAGAGGCTGCGGCCGCG...GTGATAGCACACGTAGCTTTCAGAAAGCCTGCACTGCCTGACAGACATCCTTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199079.2 |
||
| CDS-3UTR CAA 90 bp | AGGCTAACTTCAGTGACCTGTGTAACTGCTCCAAGTCCCAGTGACCGGCCCTCCGCCACCTCTTCATCATaGGGGTCTACTGTGGTCTCG | + |
|
Preference number: 5 (lower is better) Translates to: RLTSVTCVTAPSPSDRPSATSSS*GSTVVS Trigger: CGAGACCACAGTAGACCCCAATGATGAAGAGGTGGC...GGAGGGCCGGTCACTGGGACTTGGAGCAGTTACACAGGTCACTGAAGTTAGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029838.11 |
||
| CDS CCA 90 bp | GGTCTACTGTGGTCTCGTCGTAAACGCGCTGGTTGTCAATGGTCTTaGGAACAGGCTTTGGTGGAGCCTTATCGCCAAGAGCCTCTCTCT | + |
|
Preference number: 5 (lower is better) Translates to: GLLWSRRKRAGCQWS*EQALVEPYRQEPLS Trigger: AGAGAGAGGCTCTTGGCGATAAGGCTCCACCAAAGCCTGTTCCCAAGACCATTGACAACCAGCGCGTTTACGACGAGACCACAGTAGACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029838.11 ENSMUST00000199079.2 |
||
| CDS CCA 90 bp | CATTGGGGTCTACTGTGGTCTCGTCGTAAACGCGCTGGTTGTCAATaGTCTTGGGAACAGGCTTTGGTGGAGCCTTATCGCCAAGAGCCT | + |
|
Preference number: 5 (lower is better) Translates to: HWGLLWSRRKRAGCQ*SWEQALVEPYRQEP Trigger: AGGCTCTTGGCGATAAGGCTCCACCAAAGCCTGTTCCCAAGACCATTGACAACCAGCGCGTTTACGACGAGACCACAGTAGACCCCAATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029838.11 ENSMUST00000199079.2 |
||
| CDS CCA 90 bp | CCGTCGCTTCATCGTAAGCCACCTCTTCATCATTGGGGTCTACTGTaGTCTCGTCGTAAACGCGCTGGTTGTCAATGGTCTTGGGAACAG | + |
|
Preference number: 5 (lower is better) Translates to: PSLHRKPPLHHWGLL*SRRKRAGCQWSWEQ Trigger: CTGTTCCCAAGACCATTGACAACCAGCGCGTTTACGACGAGACCACAGTAGACCCCAATGATGAAGAGGTGGCTTACGATGAAGCGACGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029838.11 ENSMUST00000199079.2 |
||
| CDS-3UTR CAA 90 bp | ACCTGTGTAACTGCTCCAAGTCCCAGTGACCGGCCCTCCAAGACTGGCGTATTATGGTTGTCAATGGTCTaGGGAACAGGCTTTGGTGGA | + |
|
Preference number: 5 (lower is better) Translates to: TCVTAPSPSDRPSKTGVLWLSMV*GTGFGG Trigger: TCCACCAAAGCCTGTTCCCAAGACCATTGACAACCA...TAATACGCCAGTCTTGGAGGGCCGGTCACTGGGACTTGGAGCAGTTACACAGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029838.11 |
||
| CDS-3UTR CAA 90 bp | ATGTCTGTCAGGCAGTGCAGGCTTTCTGAAAGCTACGTGTGCTATCACTTGTGCGCCACCTCTTCATCATaGGGGTCTACTGTGGTCTCG | + |
|
Preference number: 5 (lower is better) Translates to: MSVRQCRLSESYVCYHLCATSSS*GSTVVS Trigger: CGAGACCACAGTAGACCCCAATGATGAAGAGGTGGC...GCACAAGTGATAGCACACGTAGCTTTCAGAAAGCCTGCACTGCCTGACAGACAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199079.2 |
||
| CDS-3UTR CAA 90 bp | AAAAGGATGTCTGTCAGGCAGTGCAGGCTTTCTGAAAGCTACGTGTGCTATCACAAGTGTCGCCGCTGCTaGTTCTTAATCTCCGAGATA | + |
|
Preference number: 5 (lower is better) Translates to: KRMSVRQCRLSESYVCYHKCRRC*FLISEI Trigger: TATCTCGGAGATTAAGAACAAGCAGCGGCGACACTT...GTGATAGCACACGTAGCTTTCAGAAAGCCTGCACTGCCTGACAGACATCCTTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199079.2 |
||
| CDS-3UTR CAA 90 bp | CATTCACGGTTATACCAAGAGGGTAGCTGCTTCCATCTGGAAATAAGAGAGAGTGGAATTTCCTTCGACTaGTATCCATTTCCCGTGGCT | + |
|
Preference number: 5 (lower is better) Translates to: HSRLYQEGSCFHLEIRESGISFD*YPFPVA Trigger: AGCCACGGGAAATGGATACAAGTCGAAGGAAATTCC...ACTCTCTCTTATTTCCAGATGGAAGCAGCTACCCTCTTGGTATAACCGTGAATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029838.11 |
||
| CDS-3UTR CAA 90 bp | CTCCAAGACTGGCGTATTAAGTCAGGGTTATACAAGCCTTTTTCTAGCCTAACAAAGTGTCGCCGCTGCTaGTTCTTAATCTCCGAGATA | + |
|
Preference number: 5 (lower is better) Translates to: LQDWRIKSGLYKPFSSLTKCRRC*FLISEI Trigger: TATCTCGGAGATTAAGAACAAGCAGCGGCGACACTT...TGTTAGGCTAGAAAAAGGCTTGTATAACCCTGACTTAATACGCCAGTCTTGGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029838.11 |
||
| CDS-3UTR CAA 90 bp | GTGGAATTTCCTTCGACTTGTATCCATTTCCCGTGGCTGAAAATTAAAGGGGGATGTTCTGTGGGGTCTTaGCCTCTTCGCTTAATTTCT | + |
|
Preference number: 5 (lower is better) Translates to: VEFPSTCIHFPWLKIKGGCSVGS*PLRLIS Trigger: AGAAATTAAGCGAAGAGGCAAAGACCCCACAGAACA...TCCCCCTTTAATTTTCAGCCACGGGAAATGGATACAAGTCGAAGGAAATTCCAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000199174.2 |
||
| CDS-3UTR CAA 90 bp | CTCCAAGACTGGCGTATTAAGTCAGGGTTATACAAGCCTTTTTCTAGCCTAACATGTTCTGTGGGGTCTTaGCCTCTTCGCTTAATTTCT | + |
|
Preference number: 5 (lower is better) Translates to: LQDWRIKSGLYKPFSSLTCSVGS*PLRLIS Trigger: AGAAATTAAGCGAAGAGGCAAAGACCCCACAGAACA...TGTTAGGCTAGAAAAAGGCTTGTATAACCCTGACTTAATACGCCAGTCTTGGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029838.11 |
||
| CDS-3UTR CAA 90 bp | GGTAGCTGCTTCCATCTGGAAATAAGAGAGAGTTCCATTAAAAGAATCAAGAACGTGGAACGTGGCAACTaGTCTTCCAATAAATTGAGG | + |
|
Preference number: 5 (lower is better) Translates to: GSCFHLEIRESSIKRIKNVERGN*SSNKLR Trigger: CCTCAATTTATTGGAAGACAAGTTGCCACGTTCCAC...GTTCTTGATTCTTTTAATGGAACTCTCTCTTATTTCCAGATGGAAGCAGCTACC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029838.11 |
||
| CDS-3UTR CAA 90 bp | TTCATTGAATTACCAAGTTTTTCAAGACAGGCCAATCCAGCAAAATTCAGTACTGTGGAACGTGGCAACTaGTCTTCCAATAAATTGAGG | + |
|
Preference number: 5 (lower is better) Translates to: FIELPSFSRQANPAKFSTVERGN*SSNKLR Trigger: CCTCAATTTATTGGAAGACAAGTTGCCACGTTCCAC...AGTACTGAATTTTGCTGGATTGGCCTGTCTTGAAAAACTTGGTAATTCAATGAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029838.11 ENSMUST00000199174.2 |
||
| CDS GCA 72 bp | TGCTGTTTCCACCGCGTGAACATCAAGTGTCGCCGCTaGTTGTTCTTAATCTCCGAGATACTGAAGCCCGGG | + |
|
Preference number: 6 (lower is better) Translates to: CCFHRVNIKCRR*LFLISEILKPG Trigger: CCCGGGCTTCAGTATCTCGGAGATTAAGAACAAGCAGCGGCGACACTTGATGTTCACGCGGTGGAAACAGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029838.11 ENSMUST00000199079.2 |
||
| CDS CCA 72 bp | TGGTCTCGTCGTAAACGCGCTGGTTGTCAATGGTCTTaGGAACAGGCTTTGGTGGAGCCTTATCGCCAAGAG | + |
|
Preference number: 6 (lower is better) Translates to: WSRRKRAGCQWS*EQALVEPYRQE Trigger: CTCTTGGCGATAAGGCTCCACCAAAGCCTGTTCCCAAGACCATTGACAACCAGCGCGTTTACGACGAGACCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029838.11 ENSMUST00000199079.2 |
||
| CDS CCA 72 bp | CTACTGTGGTCTCGTCGTAAACGCGCTGGTTGTCAATaGTCTTGGGAACAGGCTTTGGTGGAGCCTTATCGC | + |
|
Preference number: 6 (lower is better) Translates to: LLWSRRKRAGCQ*SWEQALVEPYR Trigger: GCGATAAGGCTCCACCAAAGCCTGTTCCCAAGACCATTGACAACCAGCGCGTTTACGACGAGACCACAGTAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029838.11 ENSMUST00000199079.2 |
||
| CDS CCA 72 bp | CATCCGTCGCTTCATCGTAAGCCACCTCTTCATCATTaGGGTCTACTGTGGTCTCGTCGTAAACGCGCTGGT | + |
|
Preference number: 6 (lower is better) Translates to: HPSLHRKPPLHH*GLLWSRRKRAG Trigger: ACCAGCGCGTTTACGACGAGACCACAGTAGACCCCAATGATGAAGAGGTGGCTTACGATGAAGCGACGGATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029838.11 ENSMUST00000199079.2 |
||
| CDS CAA 72 bp | AAACGCGCTGGTTGTCAATGGTCTTGGGAACAGGCTTaGGTGGAGCCTTATCGCCAAGAGCCTCTCTCTCCT | + |
|
Preference number: 6 (lower is better) Translates to: KRAGCQWSWEQA*VEPYRQEPLSP Trigger: AGGAGAGAGAGGCTCTTGGCGATAAGGCTCCACCAAAGCCTGTTCCCAAGACCATTGACAACCAGCGCGTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029838.11 ENSMUST00000199079.2 |
||
| CDS CCA 72 bp | CATCGTAAGCCACCTCTTCATCATTGGGGTCTACTGTaGTCTCGTCGTAAACGCGCTGGTTGTCAATGGTCT | + |
|
Preference number: 6 (lower is better) Translates to: HRKPPLHHWGLL*SRRKRAGCQWS Trigger: AGACCATTGACAACCAGCGCGTTTACGACGAGACCACAGTAGACCCCAATGATGAAGAGGTGGCTTACGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029838.11 ENSMUST00000199079.2 |
||
| CDS TCA 72 bp | CTCACAGAGTCGAACTGTTCTCCCATGAGGTCTATCTaGCGTTGTGATAAGAATCTTAGGAGACGTCTGTCT | + |
|
Preference number: 6 (lower is better) Translates to: LTESNCSPMRSI*RCDKNLRRRLS Trigger: AGACAGACGTCTCCTAAGATTCTTATCACAACGTCAGATAGACCTCATGGGAGAACAGTTCGACTCTGTGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029838.11 ENSMUST00000199079.2 |
||