Pregenerated sensors for RPE65 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028174Ensembl transcript IDs: ENSMUST00000029824.9, ENSMUST00000196999.5, ENSMUST00000197771.5
Found 111 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCATTGGATTCCGTCTCAGATGGAAGTGAGTCACCAGGTGATCTTTaGGAATTGAACACACGATCTGTAGAAGGGCAGTCAGTGTTGTAC | + |
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Preference number: 1 (lower is better) Translates to: ALDSVSDGSESPGDL*ELNTRSVEGQSVLY Trigger: GTACAACACTGACTGCCCTTCTACAGATCGTGTGTTCAATTCCCAAAGATCACCTGGTGACTCACTTCCATCTGAGACGGAATCCAATGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
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| 3UTR CCA 90 bp | TATGAGTACACTTTTGCTGTCTTCAGAAACAGCATAAGAGGGCATTaGATTCCGTCTCAGATGGAAGTGAGTCACCAGGTGATCTTTGGG | + |
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Preference number: 1 (lower is better) Translates to: YEYTFAVFRNSIRGH*IPSQMEVSHQVIFG Trigger: CCCAAAGATCACCTGGTGACTCACTTCCATCTGAGACGGAATCCAATGCCCTCTTATGCTGTTTCTGAAGACAGCAAAAGTGTACTCATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
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| 3UTR CCA 90 bp | AATATAGTTGCAAAGATCAACCTGCTTAATTGTCTCCAAGGTCTCTaGGTTAATCTTTGTGATAAAGTTGGTCTCTGTGCATGCATAGTA | + |
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Preference number: 1 (lower is better) Translates to: NIVAKINLLNCLQGL*VNLCDKVGLCACIV Trigger: TACTATGCATGCACAGAGACCAACTTTATCACAAAGATTAACCCAGAGACCTTGGAGACAATTAAGCAGGTTGATCTTTGCAACTATATT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197771.5 |
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| 3UTR-3UTR TCA 90 bp | GTCTTCAGAAACAGCATAAGAGGGCATTGGATTCCGTCTCAGATGGAAGTGAGTTCAGTGTTGTACTGCTaGGCCATCTCTGGAATATGT | + |
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Preference number: 2 (lower is better) Translates to: VFRNSIRGHWIPSQMEVSSVLYC*AISGIC Trigger: ACATATTCCAGAGATGGCTCAGCAGTACAACACTGA...ACTCACTTCCATCTGAGACGGAATCCAATGCCCTCTTATGCTGTTTCTGAAGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
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| 3UTR-3UTR CCA 90 bp | AGATCAACCTGCTTAATTGTCTCCAAGGTCTCTGGGTTAATCTTTGTGATAAAGATTCTTGCAGGGGTCTaGGAAAGCACAGGTGCCAAA | + |
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Preference number: 2 (lower is better) Translates to: RSTCLIVSKVSGLIFVIKILAGV*ESTGAK Trigger: TTTGGCACCTGTGCTTTCCCAGACCCCTGCAAGAAT...CTTTATCACAAAGATTAACCCAGAGACCTTGGAGACAATTAAGCAGGTTGATCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197771.5 |
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| 3UTR-3UTR CCA 90 bp | AGATCAACCTGCTTAATTGTCTCCAAGGTCTCTGGGTTAATCTTTGTGATAAAGGTAATCTTCTCCCACTaGGTAGATATTTACAAGGGC | + |
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Preference number: 2 (lower is better) Translates to: RSTCLIVSKVSGLIFVIKVIFSH*VDIYKG Trigger: GCCCTTGTAAATATCTACCCAGTGGGAGAAGATTAC...CTTTATCACAAAGATTAACCCAGAGACCTTGGAGACAATTAAGCAGGTTGATCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197771.5 |
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| 3UTR CCA 72 bp | TCCGTCTCAGATGGAAGTGAGTCACCAGGTGATCTTTaGGAATTGAACACACGATCTGTAGAAGGGCAGTCA | + |
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Preference number: 3 (lower is better) Translates to: SVSDGSESPGDL*ELNTRSVEGQS Trigger: TGACTGCCCTTCTACAGATCGTGTGTTCAATTCCCAAAGATCACCTGGTGACTCACTTCCATCTGAGACGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
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| 3UTR CCA 72 bp | ACTTTTGCTGTCTTCAGAAACAGCATAAGAGGGCATTaGATTCCGTCTCAGATGGAAGTGAGTCACCAGGTG | + |
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Preference number: 3 (lower is better) Translates to: TFAVFRNSIRGH*IPSQMEVSHQV Trigger: CACCTGGTGACTCACTTCCATCTGAGACGGAATCCAATGCCCTCTTATGCTGTTTCTGAAGACAGCAAAAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
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| 3UTR-3UTR CAA 90 bp | GTCTTCAGAAACAGCATAAGAGGGCATTGGATTCCGTCTCAGATGGAAGTGAGTGGTGATCTTTGGGAATaGAACACACGATCTGTAGAA | + |
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Preference number: 3 (lower is better) Translates to: VFRNSIRGHWIPSQMEVSGDLWE*NTRSVE Trigger: TTCTACAGATCGTGTGTTCAATTCCCAAAGATCACC...ACTCACTTCCATCTGAGACGGAATCCAATGCCCTCTTATGCTGTTTCTGAAGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
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| 3UTR CCA 72 bp | GCAAAGATCAACCTGCTTAATTGTCTCCAAGGTCTCTaGGTTAATCTTTGTGATAAAGTTGGTCTCTGTGCA | + |
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Preference number: 3 (lower is better) Translates to: AKINLLNCLQGL*VNLCDKVGLCA Trigger: TGCACAGAGACCAACTTTATCACAAAGATTAACCCAGAGACCTTGGAGACAATTAAGCAGGTTGATCTTTGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197771.5 |
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| 3UTR-3UTR CAA 90 bp | TCAACCTGCTTAATTGTCTCCAAGGTCTCTGGGTTAATCTTTGTGATAAAGTTGATATTTACAAGGGCATaGTCAGTAACCTCTACTCCT | + |
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Preference number: 3 (lower is better) Translates to: STCLIVSKVSGLIFVIKLIFTRA*SVTSTP Trigger: AGGAGTAGAGGTTACTGACAATGCCCTTGTAAATAT...CAACTTTATCACAAAGATTAACCCAGAGACCTTGGAGACAATTAAGCAGGTTGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197771.5 |
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| CDS-3UTR TCA 90 bp | AGGGCATTGGATTCCGTCTCAGATGGAAGTGAGTCACCAGGTGATCTTTGGGAAGGAGGAGACTGCCAGTaGGCCAGAGGGGAATCCTGC | + |
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Preference number: 4 (lower is better) Translates to: RALDSVSDGSESPGDLWEGGDCQ*ARGESC Trigger: GCAGGATTCCCCTCTGGCTCACTGGCAGTCTCCTCC...TTCCCAAAGATCACCTGGTGACTCACTTCCATCTGAGACGGAATCCAATGCCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
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| CDS-3UTR TCA 90 bp | CAGGGGTCTGGGAAAGCACAGGTGCCAAATTCTGTTATGACAATCCTCTTCTCAGGAGGAGACTGCCAGTaGGCCAGAGGGGAATCCTGC | + |
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Preference number: 4 (lower is better) Translates to: QGSGKAQVPNSVMTILFSGGDCQ*ARGESC Trigger: GCAGGATTCCCCTCTGGCTCACTGGCAGTCTCCTCC...TGAGAAGAGGATTGTCATAACAGAATTTGGCACCTGTGCTTTCCCAGACCCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197771.5 |
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| CDS-3UTR GCA 90 bp | GATTCCGTCTCAGATGGAAGTGAGTCACCAGGTGATCTTTGGGAATTGAACACATGCAGGCTTTTGCCCTaGCCCAGGGCTCACCACCAC | + |
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Preference number: 4 (lower is better) Translates to: DSVSDGSESPGDLWELNTCRLLP*PRAHHH Trigger: GTGGTGGTGAGCCCTGGGGCAGGGCAAAAGCCTGCA...TGTGTTCAATTCCCAAAGATCACCTGGTGACTCACTTCCATCTGAGACGGAATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
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| CDS-3UTR TCA 90 bp | CAGCATAAGAGGGCATTGGATTCCGTCTCAGATGGAAGTGAGTCACCAGGTGATATCCTGCCTGTGACATaGGCTGTTAGTGGTGAGGAC | + |
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Preference number: 4 (lower is better) Translates to: QHKRALDSVSDGSESPGDILPVT*AVSGED Trigger: GTCCTCACCACTAACAGCTCATGTCACAGGCAGGAT...ATCACCTGGTGACTCACTTCCATCTGAGACGGAATCCAATGCCCTCTTATGCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
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| CDS-3UTR GCA 90 bp | TTTGCTGTCTTCAGAAACAGCATAAGAGGGCATTGGATTCCGTCTCAGATGGAAAGATATGCAGGCTTTTaGCCTGCCCCAGGGCTCACC | + |
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Preference number: 4 (lower is better) Translates to: FAVFRNSIRGHWIPSQMERYAGF*PAPGLT Trigger: GGTGAGCCCTGGGGCAGGGCAAAAGCCTGCATATCT...TTCCATCTGAGACGGAATCCAATGCCCTCTTATGCTGTTTCTGAAGACAGCAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
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| CDS-3UTR GCA 90 bp | CTTCAGAAACAGCATAAGAGGGCATTGGATTCCGTCTCAGATGGAAGTGAGTCACAGAACCAGGAGATATaGAGGCTTTTGCCCTGCCCC | + |
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Preference number: 4 (lower is better) Translates to: LQKQHKRALDSVSDGSESQNQEI*RLLPCP Trigger: GGGGCAGGGCAAAAGCCTGCATATCTCCTGGTTCTG...TGACTCACTTCCATCTGAGACGGAATCCAATGCCCTCTTATGCTGTTTCTGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
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| CDS-3UTR CCA 90 bp | CAGCATAAGAGGGCATTGGATTCCGTCTCAGATGGAAGTGAGTCACCAGGTGATATTCTTGCAGGGGTCTaGGAAAGCACAGGTGCCAAA | + |
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Preference number: 4 (lower is better) Translates to: QHKRALDSVSDGSESPGDILAGV*ESTGAK Trigger: TTTGGCACCTGTGCTTTCCCAGACCCCTGCAAGAAT...ATCACCTGGTGACTCACTTCCATCTGAGACGGAATCCAATGCCCTCTTATGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
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| CDS-3UTR TCA 90 bp | AGCATAAGAGGGCATTGGATTCCGTCTCAGATGGAAGTGAGTCACCAGGTGATCGTACATAAGATGGCTTaGAACGATCACTGCAGGGGA | + |
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Preference number: 4 (lower is better) Translates to: SIRGHWIPSQMEVSHQVIVHKMA*NDHCRG Trigger: TCCCCTGCAGTGATCGTTTCAAGCCATCTTATGTAC...GATCACCTGGTGACTCACTTCCATCTGAGACGGAATCCAATGCCCTCTTATGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
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| CDS-3UTR TCA 90 bp | ACTTTTGCTGTCTTCAGAAACAGCATAAGAGGGCATTGGATTCCGTCTCAGATGGGCTTGACGAGGCCCTaGAAAGAGAACCTCAGGTTC | + |
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Preference number: 4 (lower is better) Translates to: TFAVFRNSIRGHWIPSQMGLTRP*KENLRF Trigger: GAACCTGAGGTTCTCTTTTCAGGGCCTCGTCAAGCC...CATCTGAGACGGAATCCAATGCCCTCTTATGCTGTTTCTGAAGACAGCAAAAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
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| CDS-3UTR TCA 90 bp | CAGGGGTCTGGGAAAGCACAGGTGCCAAATTCTGTTATGACAATCCTCTTCTCACTGTGTTCCATGTTCTaGTTCCTTCCTGCCTTGGCT | + |
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Preference number: 4 (lower is better) Translates to: QGSGKAQVPNSVMTILFSLCSMF*FLPALA Trigger: AGCCAAGGCAGGAAGGAATCAGAACATGGAACACAG...TGAGAAGAGGATTGTCATAACAGAATTTGGCACCTGTGCTTTCCCAGACCCCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197771.5 |
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| CDS-3UTR CCA 90 bp | TTTGCTGTCTTCAGAAACAGCATAAGAGGGCATTGGATTCCGTCTCAGATGGAACATCACTGCGCAGAGTaGCTGTGGCAGTTGTATGGG | + |
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Preference number: 4 (lower is better) Translates to: FAVFRNSIRGHWIPSQMEHHCAE*LWQLYG Trigger: CCCATACAACTGCCACAGCCACTCTGCGCAGTGATG...TTCCATCTGAGACGGAATCCAATGCCCTCTTATGCTGTTTCTGAAGACAGCAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
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| CDS-3UTR CCA 90 bp | GTCTCCAAGGTCTCTGGGTTAATCTTTGTGATAAAGTTGGTCTCTGTGCATGCATGGCTTCCCCTTCTGTaGTATGTGACATGGCCCTCC | + |
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Preference number: 4 (lower is better) Translates to: VSKVSGLIFVIKLVSVHAWLPLL*YVTWPS Trigger: GGAGGGCCATGTCACATACCACAGAAGGGGAAGCCA...TGCATGCACAGAGACCAACTTTATCACAAAGATTAACCCAGAGACCTTGGAGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197771.5 |
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| CDS-3UTR TCA 90 bp | CAGCATAAGAGGGCATTGGATTCCGTCTCAGATGGAAGTGAGTCACCAGGTGATCTTTCAATATGTGGATaGGCAGTGGCACCATTGACA | + |
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Preference number: 4 (lower is better) Translates to: QHKRALDSVSDGSESPGDLSICG*AVAPLT Trigger: TGTCAATGGTGCCACTGCTCATCCACATATTGAAAG...ATCACCTGGTGACTCACTTCCATCTGAGACGGAATCCAATGCCCTCTTATGCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
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| CDS-3UTR TCA 90 bp | GTCTCAGATGGAAGTGAGTCACCAGGTGATCTTTGGGAATTGAACACACGATCTCTCCTGACTTCAGGCTaGGGAGCCTTCATAGCATTT | + |
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Preference number: 4 (lower is better) Translates to: VSDGSESPGDLWELNTRSLLTSG*GAFIAF Trigger: AAATGCTATGAAGGCTCCTCAGCCTGAAGTCAGGAG...AGATCGTGTGTTCAATTCCCAAAGATCACCTGGTGACTCACTTCCATCTGAGAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
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| CDS-3UTR TCA 90 bp | TTCAGAAACAGCATAAGAGGGCATTGGATTCCGTCTCAGATGGAAGTGAGTCACGAAGTACATATCTCCTaGCTTCAGGCTGAGGAGCCT | + |
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Preference number: 4 (lower is better) Translates to: FRNSIRGHWIPSQMEVSHEVHIS*LQAEEP Trigger: AGGCTCCTCAGCCTGAAGTCAGGAGATATGTACTTC...GTGACTCACTTCCATCTGAGACGGAATCCAATGCCCTCTTATGCTGTTTCTGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
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| CDS-3UTR CCA 90 bp | AGGGCATTGGATTCCGTCTCAGATGGAAGTGAGTCACCAGGTGATCTTTGGGAAGCTGTGGCAGTTGTATaGGGCAGTGTGACTAAATTT | + |
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Preference number: 4 (lower is better) Translates to: RALDSVSDGSESPGDLWEAVAVV*GSVTKF Trigger: AAATTTAGTCACACTGCCCCATACAACTGCCACAGC...TTCCCAAAGATCACCTGGTGACTCACTTCCATCTGAGACGGAATCCAATGCCCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
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| CDS-3UTR TCA 90 bp | AGGGCATTGGATTCCGTCTCAGATGGAAGTGAGTCACCAGGTGATCTTTGGGAAGAGCAGTGGCACCATTaGCAGAAATATAGTTGCAAA | + |
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Preference number: 4 (lower is better) Translates to: RALDSVSDGSESPGDLWEEQWHH*QKYSCK Trigger: TTTGCAACTATATTTCTGTCAATGGTGCCACTGCTC...TTCCCAAAGATCACCTGGTGACTCACTTCCATCTGAGACGGAATCCAATGCCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
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| CDS-3UTR TCA 90 bp | TTCAGAAACAGCATAAGAGGGCATTGGATTCCGTCTCAGATGGAAGTGAGTCACGGAAATTCAAAGGCTTaGCGAGGCCCTGAAAAGAGA | + |
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Preference number: 4 (lower is better) Translates to: FRNSIRGHWIPSQMEVSHGNSKA*RGPEKR Trigger: TCTCTTTTCAGGGCCTCGTCAAGCCTTTGAATTTCC...GTGACTCACTTCCATCTGAGACGGAATCCAATGCCCTCTTATGCTGTTTCTGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
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| CDS-3UTR TCA 90 bp | CAGCATAAGAGGGCATTGGATTCCGTCTCAGATGGAAGTGAGTCACCAGGTGATTTGTCAGGAACAAAGTaGTTCAACCCAAGTCCGTAT | + |
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Preference number: 4 (lower is better) Translates to: QHKRALDSVSDGSESPGDLSGTK*FNPSPY Trigger: ATACGGACTTGGGTTGAATCACTTTGTTCCTGACAA...ATCACCTGGTGACTCACTTCCATCTGAGACGGAATCCAATGCCCTCTTATGCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
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| CDS-3UTR CCA 90 bp | TTGGATTCCGTCTCAGATGGAAGTGAGTCACCAGGTGATCTTTGGGAATTGAACCTGTGGTATGTGACATaGCCCTCCTTGAAGTCAAAC | + |
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Preference number: 4 (lower is better) Translates to: LDSVSDGSESPGDLWELNLWYVT*PSLKSN Trigger: GTTTGACTTCAAGGAGGGCCATGTCACATACCACAG...GTTCAATTCCCAAAGATCACCTGGTGACTCACTTCCATCTGAGACGGAATCCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
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| CDS-3UTR CCA 90 bp | AGGGCATTGGATTCCGTCTCAGATGGAAGTGAGTCACCAGGTGATCTTTGGGAAAAAGATGGGTTCAGATaGGTAAGAATCTGGCTCTTG | + |
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Preference number: 4 (lower is better) Translates to: RALDSVSDGSESPGDLWEKDGFR*VRIWLL Trigger: CAAGAGCCAGATTCTTACCCATCTGAACCCATCTTT...TTCCCAAAGATCACCTGGTGACTCACTTCCATCTGAGACGGAATCCAATGCCCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
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| 3UTR CAA 72 bp | TCAGATGGAAGTGAGTCACCAGGTGATCTTTGGGAATaGAACACACGATCTGTAGAAGGGCAGTCAGTGTTG | + |
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Preference number: 4 (lower is better) Translates to: SDGSESPGDLWE*NTRSVEGQSVL Trigger: CAACACTGACTGCCCTTCTACAGATCGTGTGTTCAATTCCCAAAGATCACCTGGTGACTCACTTCCATCTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
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| 3UTR CAA 72 bp | CACTTTTGCTGTCTTCAGAAACAGCATAAGAGGGCATaGGATTCCGTCTCAGATGGAAGTGAGTCACCAGGT | + |
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Preference number: 4 (lower is better) Translates to: HFCCLQKQHKRA*DSVSDGSESPG Trigger: ACCTGGTGACTCACTTCCATCTGAGACGGAATCCAATGCCCTCTTATGCTGTTTCTGAAGACAGCAAAAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
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| CDS-3UTR TCA 90 bp | TTGGATTCCGTCTCAGATGGAAGTGAGTCACCAGGTGATCTTTGGGAATTGAACTTGTATGGGGCAGTGTaGCTAAATTTCTGCCTGTGT | + |
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Preference number: 4 (lower is better) Translates to: LDSVSDGSESPGDLWELNLYGAV*LNFCLC Trigger: ACACAGGCAGAAATTTAGTCACACTGCCCCATACAA...GTTCAATTCCCAAAGATCACCTGGTGACTCACTTCCATCTGAGACGGAATCCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
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| CDS-3UTR TCA 90 bp | TGCTGTCTTCAGAAACAGCATAAGAGGGCATTGGATTCCGTCTCAGATGGAAGTTCCAGAGCATCTGGTTaGGAAACAAAGATGGGTTCA | + |
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Preference number: 4 (lower is better) Translates to: CCLQKQHKRALDSVSDGSSRASG*ETKMGS Trigger: TGAACCCATCTTTGTTTCTCAACCAGATGCTCTGGA...ACTTCCATCTGAGACGGAATCCAATGCCCTCTTATGCTGTTTCTGAAGACAGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
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| CDS-3UTR GCA 90 bp | CTTCAGAAACAGCATAAGAGGGCATTGGATTCCGTCTCAGATGGAAGTGAGTCAGTTGGTCTCTGTGCATaGATAGTAATCTTCTCCCAC | + |
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Preference number: 4 (lower is better) Translates to: LQKQHKRALDSVSDGSESVGLCA*IVIFSH Trigger: GTGGGAGAAGATTACTATGCATGCACAGAGACCAAC...TGACTCACTTCCATCTGAGACGGAATCCAATGCCCTCTTATGCTGTTTCTGAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
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| CDS-3UTR GCA 90 bp | TGCTGTCTTCAGAAACAGCATAAGAGGGCATTGGATTCCGTCTCAGATGGAAGTTGGATCTTCCTTGTCTaGTTTCAGTGGAGGGATCTT | + |
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Preference number: 4 (lower is better) Translates to: CCLQKQHKRALDSVSDGSWIFLV*FQWRDL Trigger: AAGATCCCTCCACTGAAAGCAGACAAGGAAGATCCA...ACTTCCATCTGAGACGGAATCCAATGCCCTCTTATGCTGTTTCTGAAGACAGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
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| CDS-3UTR CCA 90 bp | CTGCTTAATTGTCTCCAAGGTCTCTGGGTTAATCTTTGTGATAAAGTTGGTCTCAACTTCAAAGAGCCCTaGCCCACATCGGAGGAGACT | + |
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Preference number: 4 (lower is better) Translates to: LLNCLQGLWVNLCDKVGLNFKEP*PTSEET Trigger: AGTCTCCTCCGATGTGGGCCAGGGCTCTTTGAAGTT...GAGACCAACTTTATCACAAAGATTAACCCAGAGACCTTGGAGACAATTAAGCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197771.5 |
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| CDS-3UTR CCA 90 bp | TTGGATTCCGTCTCAGATGGAAGTGAGTCACCAGGTGATCTTTGGGAATTGAACAGATGGGTAAGAATCTaGCTCTTGCCACATCCAGAT | + |
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Preference number: 4 (lower is better) Translates to: LDSVSDGSESPGDLWELNRWVRI*LLPHPD Trigger: ATCTGGATGTGGCAAGAGCCAGATTCTTACCCATCT...GTTCAATTCCCAAAGATCACCTGGTGACTCACTTCCATCTGAGACGGAATCCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
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| CDS-3UTR GCA 90 bp | GTCTCAGATGGAAGTGAGTCACCAGGTGATCTTTGGGAATTGAACACACGATCTCCTCTTCTCAGTCATTaGTCGAACATAAGCATCAGT | + |
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Preference number: 4 (lower is better) Translates to: VSDGSESPGDLWELNTRSPLLSH*SNISIS Trigger: ACTGATGCTTATGTTCGAGCAATGACTGAGAAGAGG...AGATCGTGTGTTCAATTCCCAAAGATCACCTGGTGACTCACTTCCATCTGAGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
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| CDS-3UTR CCA 90 bp | TGCATGCATAGTAATCTTCTCCCACTGGGTAGATATTTACAAGGGCATTGTCAGCTGTGGTATGTGACATaGCCCTCCTTGAAGTCAAAC | + |
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Preference number: 4 (lower is better) Translates to: CMHSNLLPLGRYLQGHCQLWYVT*PSLKSN Trigger: GTTTGACTTCAAGGAGGGCCATGTCACATACCACAG...CTGACAATGCCCTTGTAAATATCTACCCAGTGGGAGAAGATTACTATGCATGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197771.5 |
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| CDS-3UTR CCA 90 bp | GTCTCAGATGGAAGTGAGTCACCAGGTGATCTTTGGGAATTGAACACACGATCTTTCTTCCAGAGCATCTaGTTGAGAAACAAAGATGGG | + |
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Preference number: 4 (lower is better) Translates to: VSDGSESPGDLWELNTRSFFQSI*LRNKDG Trigger: CCCATCTTTGTTTCTCAACCAGATGCTCTGGAAGAA...AGATCGTGTGTTCAATTCCCAAAGATCACCTGGTGACTCACTTCCATCTGAGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
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| CDS-3UTR TCA 90 bp | TGGGTAGATATTTACAAGGGCATTGTCAGTAACCTCTACTCCTTTAAAGTAAGAATCCTGCCTGTGACATaGGCTGTTAGTGGTGAGGAC | + |
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Preference number: 4 (lower is better) Translates to: WVDIYKGIVSNLYSFKVRILPVT*AVSGED Trigger: GTCCTCACCACTAACAGCTCATGTCACAGGCAGGAT...TCTTACTTTAAAGGAGTAGAGGTTACTGACAATGCCCTTGTAAATATCTACCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197771.5 |
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| CDS-3UTR TCA 90 bp | GATTCCGTCTCAGATGGAAGTGAGTCACCAGGTGATCTTTGGGAATTGAACACATATGATGGAAGAGATTaGAAGGGGAAGTCCTGTATT | + |
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Preference number: 4 (lower is better) Translates to: DSVSDGSESPGDLWELNTYDGRD*KGKSCI Trigger: AATACAGGACTTCCCCTTTCAATCTCTTCCATCATA...TGTGTTCAATTCCCAAAGATCACCTGGTGACTCACTTCCATCTGAGACGGAATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
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| CDS-3UTR GCA 90 bp | GATTCCGTCTCAGATGGAAGTGAGTCACCAGGTGATCTTTGGGAATTGAACACATTGAAGTCAAACTTGTaGAAAAGGGCTTGTCCATCA | + |
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Preference number: 4 (lower is better) Translates to: DSVSDGSESPGDLWELNTLKSNL*KRACPS Trigger: TGATGGACAAGCCCTTTTGCACAAGTTTGACTTCAA...TGTGTTCAATTCCCAAAGATCACCTGGTGACTCACTTCCATCTGAGACGGAATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
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| CDS-3UTR GCA 90 bp | GTCTTCAGAAACAGCATAAGAGGGCATTGGATTCCGTCTCAGATGGAAGTGAGTTTGCAAAGATCAACCTaGTTAATTGTCTCCAAGGTC | + |
|
Preference number: 4 (lower is better) Translates to: VFRNSIRGHWIPSQMEVSLQRST*LIVSKV Trigger: GACCTTGGAGACAATTAAGCAGGTTGATCTTTGCAA...ACTCACTTCCATCTGAGACGGAATCCAATGCCCTCTTATGCTGTTTCTGAAGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
||
| CDS-3UTR GCA 90 bp | TGCTTAATTGTCTCCAAGGTCTCTGGGTTAATCTTTGTGATAAAGTTGGTCTCTGTTCTGATTCCTTCCTaGCTTGGCTTCCCCTTCTGT | + |
|
Preference number: 4 (lower is better) Translates to: CLIVSKVSGLIFVIKLVSVLIPS*LGFPFC Trigger: ACAGAAGGGGAAGCCAAGGCAGGAAGGAATCAGAAC...AGAGACCAACTTTATCACAAAGATTAACCCAGAGACCTTGGAGACAATTAAGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197771.5 |
||
| CDS-3UTR CCA 90 bp | ACTTTTGCTGTCTTCAGAAACAGCATAAGAGGGCATTGGATTCCGTCTCAGATGGTAATCTTCTCCCACTaGGTAGATATTTACAAGGGC | + |
|
Preference number: 4 (lower is better) Translates to: TFAVFRNSIRGHWIPSQMVIFSH*VDIYKG Trigger: GCCCTTGTAAATATCTACCCAGTGGGAGAAGATTAC...CATCTGAGACGGAATCCAATGCCCTCTTATGCTGTTTCTGAAGACAGCAAAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
||
| CDS-3UTR CCA 90 bp | GTCTTCAGAAACAGCATAAGAGGGCATTGGATTCCGTCTCAGATGGAAGTGAGTATCACTTTCAATATGTaGATGAGCAGTGGCACCATT | + |
|
Preference number: 4 (lower is better) Translates to: VFRNSIRGHWIPSQMEVSITFNM*MSSGTI Trigger: AATGGTGCCACTGCTCATCCACATATTGAAAGTGAT...ACTCACTTCCATCTGAGACGGAATCCAATGCCCTCTTATGCTGTTTCTGAAGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
||
| CDS-3UTR CCA 90 bp | TGCTGTCTTCAGAAACAGCATAAGAGGGCATTGGATTCCGTCTCAGATGGAAGTTTTCACTCAAGTCTTTaGCATTCAGAACCAGGAGAT | + |
|
Preference number: 4 (lower is better) Translates to: CCLQKQHKRALDSVSDGSFHSSL*HSEPGD Trigger: ATCTCCTGGTTCTGAATGCCAAAGACTTGAGTGAAA...ACTTCCATCTGAGACGGAATCCAATGCCCTCTTATGCTGTTTCTGAAGACAGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
||
| CDS-3UTR CCA 90 bp | GTCTCAGATGGAAGTGAGTCACCAGGTGATCTTTGGGAATTGAACACACGATCTCTTTTGAACAGTCCATaGAAGGTCACAGGGATATTA | + |
|
Preference number: 4 (lower is better) Translates to: VSDGSESPGDLWELNTRSLLNSP*KVTGIL Trigger: TAATATCCCTGTGACCTTCCATGGACTGTTCAAAAG...AGATCGTGTGTTCAATTCCCAAAGATCACCTGGTGACTCACTTCCATCTGAGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
||
| CDS-3UTR GCA 90 bp | TGTATATATGAGTACACTTTTGCTGTCTTCAGAAACAGCATAAGAGGGCATTGGGAAGCCAAACCCCCATaGTTTCATTGGACTCGAAAC | + |
|
Preference number: 4 (lower is better) Translates to: CIYEYTFAVFRNSIRGHWEAKPP*FHWTRN Trigger: GTTTCGAGTCCAATGAAAGCATGGGGGTTTGGCTTC...CCAATGCCCTCTTATGCTGTTTCTGAAGACAGCAAAAGTGTACTCATATATACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
||
| CDS-3UTR CCA 90 bp | ATATGTATATATGAGTACACTTTTGCTGTCTTCAGAAACAGCATAAGAGGGCATAACTTCAAAGAGCCCTaGCCCACATCGGAGGAGACT | + |
|
Preference number: 4 (lower is better) Translates to: ICIYEYTFAVFRNSIRGHNFKEP*PTSEET Trigger: AGTCTCCTCCGATGTGGGCCAGGGCTCTTTGAAGTT...ATGCCCTCTTATGCTGTTTCTGAAGACAGCAAAAGTGTACTCATATATACATAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
||
| CDS-3UTR CCA 90 bp | CTTCAGAAACAGCATAAGAGGGCATTGGATTCCGTCTCAGATGGAAGTGAGTCACAAAAACGATATAGTTaGGAGTCAGACCAAAACTGT | + |
|
Preference number: 4 (lower is better) Translates to: LQKQHKRALDSVSDGSESQKRYS*ESDQNC Trigger: ACAGTTTTGGTCTGACTCCCAACTATATCGTTTTTG...TGACTCACTTCCATCTGAGACGGAATCCAATGCCCTCTTATGCTGTTTCTGAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
||
| CDS-3UTR CCA 90 bp | TTTGCTGTCTTCAGAAACAGCATAAGAGGGCATTGGATTCCGTCTCAGATGGAATGTCTCCAAGGTCTCTaGGTTAATCTTTGTGATAAA | + |
|
Preference number: 4 (lower is better) Translates to: FAVFRNSIRGHWIPSQMECLQGL*VNLCDK Trigger: TTTATCACAAAGATTAACCCAGAGACCTTGGAGACA...TTCCATCTGAGACGGAATCCAATGCCCTCTTATGCTGTTTCTGAAGACAGCAAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
||
| CDS-3UTR CCA 90 bp | ACTTTTGCTGTCTTCAGAAACAGCATAAGAGGGCATTGGATTCCGTCTCAGATGCTTGTCTGCTTTCAGTaGAGGGATCTTAATAATGTT | + |
|
Preference number: 4 (lower is better) Translates to: TFAVFRNSIRGHWIPSQMLVCFQ*RDLNNV Trigger: AACATTATTAAGATCCCTCCACTGAAAGCAGACAAG...CATCTGAGACGGAATCCAATGCCCTCTTATGCTGTTTCTGAAGACAGCAAAAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
||
| CDS-3UTR GCA 90 bp | ATATGTATATATGAGTACACTTTTGCTGTCTTCAGAAACAGCATAAGAGGGCATTCACTGCAGGGGAACTaGACAACAACTTCTGACTTG | + |
|
Preference number: 4 (lower is better) Translates to: ICIYEYTFAVFRNSIRGHSLQGN*TTTSDL Trigger: CAAGTCAGAAGTTGTTGTGCAGTTCCCCTGCAGTGA...ATGCCCTCTTATGCTGTTTCTGAAGACAGCAAAAGTGTACTCATATATACATAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
||
| CDS-3UTR GCA 90 bp | TGGGTAGATATTTACAAGGGCATTGTCAGTAACCTCTACTCCTTTAAAGTAAGATTGAAGTCAAACTTGTaGAAAAGGGCTTGTCCATCA | + |
|
Preference number: 4 (lower is better) Translates to: WVDIYKGIVSNLYSFKVRLKSNL*KRACPS Trigger: TGATGGACAAGCCCTTTTGCACAAGTTTGACTTCAA...TCTTACTTTAAAGGAGTAGAGGTTACTGACAATGCCCTTGTAAATATCTACCCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197771.5 |
||
| CDS-3UTR CCA 90 bp | TGCTTAATTGTCTCCAAGGTCTCTGGGTTAATCTTTGTGATAAAGTTGGTCTCTAACAATATTCCTTCATaGTCTGTGTTCCATGTTCTG | + |
|
Preference number: 4 (lower is better) Translates to: CLIVSKVSGLIFVIKLVSNNIPS*SVFHVL Trigger: CAGAACATGGAACACAGACCATGAAGGAATATTGTT...AGAGACCAACTTTATCACAAAGATTAACCCAGAGACCTTGGAGACAATTAAGCA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197771.5 |
||
| CDS CCA 90 bp | AGGCTTGACGAGGCCCTGAAAAGAGAACCTCAGGTTCCAGCCATATaGTCTCATCACTGCGCAGAGTGGCTGTGGCAGTTGTATGGGGCA | + |
|
Preference number: 5 (lower is better) Translates to: RLDEALKREPQVPAI*SHHCAEWLWQLYGA Trigger: TGCCCCATACAACTGCCACAGCCACTCTGCGCAGTGATGAGACCATATGGCTGGAACCTGAGGTTCTCTTTTCAGGGCCTCGTCAAGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029824.9 ENSMUST00000196999.5 |
||
| CDS-3UTR CAA 90 bp | CAGCATAAGAGGGCATTGGATTCCGTCTCAGATGGAAGTGAGTCACCAGGTGATGAGATATGCAGGCTTTaGCCCTGCCCCAGGGCTCAC | + |
|
Preference number: 5 (lower is better) Translates to: QHKRALDSVSDGSESPGDEICRL*PCPRAH Trigger: GTGAGCCCTGGGGCAGGGCAAAAGCCTGCATATCTC...ATCACCTGGTGACTCACTTCCATCTGAGACGGAATCCAATGCCCTCTTATGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
||
| CDS GCA 90 bp | CAAGTCTTTGGCATTCAGAACCAGGAGATATGCAGGCTTTTGCCCTaGCCCAGGGCTCACCACCACACTCAGAACCACACCATCATCTTC | + |
|
Preference number: 5 (lower is better) Translates to: QVFGIQNQEICRLLP*PRAHHHTQNHTIIF Trigger: GAAGATGATGGTGTGGTTCTGAGTGTGGTGGTGAGCCCTGGGGCAGGGCAAAAGCCTGCATATCTCCTGGTTCTGAATGCCAAAGACTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029824.9 ENSMUST00000196999.5 |
||
| CDS GCA 90 bp | TCACTCAAGTCTTTGGCATTCAGAACCAGGAGATATGCAGGCTTTTaGCCTGCCCCAGGGCTCACCACCACACTCAGAACCACACCATCA | + |
|
Preference number: 5 (lower is better) Translates to: SLKSLAFRTRRYAGF*PAPGLTTTLRTTPS Trigger: TGATGGTGTGGTTCTGAGTGTGGTGGTGAGCCCTGGGGCAGGGCAAAAGCCTGCATATCTCCTGGTTCTGAATGCCAAAGACTTGAGTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029824.9 ENSMUST00000196999.5 |
||
| CDS GCA 90 bp | CCTGGCAATTTCACTCAAGTCTTTGGCATTCAGAACCAGGAGATATaGAGGCTTTTGCCCTGCCCCAGGGCTCACCACCACACTCAGAAC | + |
|
Preference number: 5 (lower is better) Translates to: PGNFTQVFGIQNQEI*RLLPCPRAHHHTQN Trigger: GTTCTGAGTGTGGTGGTGAGCCCTGGGGCAGGGCAAAAGCCTGCATATCTCCTGGTTCTGAATGCCAAAGACTTGAGTGAAATTGCCAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029824.9 ENSMUST00000196999.5 |
||
| CDS CCA 90 bp | AGCCATATGGTCTCATCACTGCGCAGAGTGGCTGTGGCAGTTGTATaGGGCAGTGTGACTAAATTTCTGCCTGTGTCGACCTTGTCAATT | + |
|
Preference number: 5 (lower is better) Translates to: SHMVSSLRRVAVAVV*GSVTKFLPVSTLSI Trigger: AATTGACAAGGTCGACACAGGCAGAAATTTAGTCACACTGCCCCATACAACTGCCACAGCCACTCTGCGCAGTGATGAGACCATATGGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029824.9 ENSMUST00000196999.5 |
||
| CDS CCA 90 bp | TCTGATTCCTTCCTGCCTTGGCTTCCCCTTCTGTGGTATGTGACATaGCCCTCCTTGAAGTCAAACTTGTGCAAAAGGGCTTGTCCATCA | + |
|
Preference number: 5 (lower is better) Translates to: SDSFLPWLPLLWYVT*PSLKSNLCKRACPS Trigger: TGATGGACAAGCCCTTTTGCACAAGTTTGACTTCAAGGAGGGCCATGTCACATACCACAGAAGGGGAAGCCAAGGCAGGAAGGAATCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197771.5 |
||
| CDS-3UTR CAA 90 bp | AACAGCATAAGAGGGCATTGGATTCCGTCTCAGATGGAAGTGAGTCACCAGGTGACCCCCATGCTTTCATaGGACTCGAAACAGTCCATG | + |
|
Preference number: 5 (lower is better) Translates to: NSIRGHWIPSQMEVSHQVTPMLS*DSKQSM Trigger: CATGGACTGTTTCGAGTCCAATGAAAGCATGGGGGT...CACCTGGTGACTCACTTCCATCTGAGACGGAATCCAATGCCCTCTTATGCTGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
||
| CDS TCA 90 bp | TCTCATCACTGCGCAGAGTGGCTGTGGCAGTTGTATGGGGCAGTGTaGCTAAATTTCTGCCTGTGTCGACCTTGTCAATTGTCAAAGGAA | + |
|
Preference number: 5 (lower is better) Translates to: SHHCAEWLWQLYGAV*LNFCLCRPCQLSKE Trigger: TTCCTTTGACAATTGACAAGGTCGACACAGGCAGAAATTTAGTCACACTGCCCCATACAACTGCCACAGCCACTCTGCGCAGTGATGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029824.9 ENSMUST00000196999.5 |
||
| CDS CCA 90 bp | TGTGTTCCATGTTCTGATTCCTTCCTGCCTTGGCTTCCCCTTCTGTaGTATGTGACATGGCCCTCCTTGAAGTCAAACTTGTGCAAAAGG | + |
|
Preference number: 5 (lower is better) Translates to: CVPCSDSFLPWLPLL*YVTWPSLKSNLCKR Trigger: CCTTTTGCACAAGTTTGACTTCAAGGAGGGCCATGTCACATACCACAGAAGGGGAAGCCAAGGCAGGAAGGAATCAGAACATGGAACACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197771.5 |
||
| CDS CCA 90 bp | TATTCCTTCATGGTCTGTGTTCCATGTTCTGATTCCTTCCTGCCTTaGCTTCCCCTTCTGTGGTATGTGACATGGCCCTCCTTGAAGTCA | + |
|
Preference number: 5 (lower is better) Translates to: YSFMVCVPCSDSFLP*LPLLWYVTWPSLKS Trigger: TGACTTCAAGGAGGGCCATGTCACATACCACAGAAGGGGAAGCCAAGGCAGGAAGGAATCAGAACATGGAACACAGACCATGAAGGAATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197771.5 |
||
| CDS-3UTR CAA 90 bp | AGCATAAGAGGGCATTGGATTCCGTCTCAGATGGAAGTGAGTCACCAGGTGATCGTGACATGGCCCTCCTaGAAGTCAAACTTGTGCAAA | + |
|
Preference number: 5 (lower is better) Translates to: SIRGHWIPSQMEVSHQVIVTWPS*KSNLCK Trigger: TTTGCACAAGTTTGACTTCAAGGAGGGCCATGTCAC...GATCACCTGGTGACTCACTTCCATCTGAGACGGAATCCAATGCCCTCTTATGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
||
| CDS TCA 90 bp | AGATGGCTTGAAACGATCACTGCAGGGGAACTGCACAACAACTTCTaGCTTGTTTATTGGATCTTCCTTGTCTGCTTTCAGTGGAGGGAT | + |
|
Preference number: 5 (lower is better) Translates to: RWLETITAGELHNNF*LVYWIFLVCFQWRD Trigger: ATCCCTCCACTGAAAGCAGACAAGGAAGATCCAATAAACAAGTCAGAAGTTGTTGTGCAGTTCCCCTGCAGTGATCGTTTCAAGCCATCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029824.9 ENSMUST00000196999.5 |
||
| CDS-3UTR CAA 90 bp | GTCTCAGATGGAAGTGAGTCACCAGGTGATCTTTGGGAATTGAACACACGATCTCTTGTGCAAAAGGGCTaGTCCATCAAACAGGTGATA | + |
|
Preference number: 5 (lower is better) Translates to: VSDGSESPGDLWELNTRSLVQKG*SIKQVI Trigger: TATCACCTGTTTGATGGACAAGCCCTTTTGCACAAG...AGATCGTGTGTTCAATTCCCAAAGATCACCTGGTGACTCACTTCCATCTGAGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
||
| CDS-3UTR CAA 90 bp | AACAGCATAAGAGGGCATTGGATTCCGTCTCAGATGGAAGTGAGTCACCAGGTGATATTTACAAGGGCATaGTCAGTAACCTCTACTCCT | + |
|
Preference number: 5 (lower is better) Translates to: NSIRGHWIPSQMEVSHQVIFTRA*SVTSTP Trigger: AGGAGTAGAGGTTACTGACAATGCCCTTGTAAATAT...CACCTGGTGACTCACTTCCATCTGAGACGGAATCCAATGCCCTCTTATGCTGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
||
| CDS-3UTR CAA 90 bp | TGCTGTCTTCAGAAACAGCATAAGAGGGCATTGGATTCCGTCTCAGATGGAAGTTTTATTGGATCTTCCTaGTCTGCTTTCAGTGGAGGG | + |
|
Preference number: 5 (lower is better) Translates to: CCLQKQHKRALDSVSDGSFIGSS*SAFSGG Trigger: CCCTCCACTGAAAGCAGACAAGGAAGATCCAATAAA...ACTTCCATCTGAGACGGAATCCAATGCCCTCTTATGCTGTTTCTGAAGACAGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
||
| CDS-3UTR CAA 90 bp | GTCTCCAAGGTCTCTGGGTTAATCTTTGTGATAAAGTTGGTCTCTGTGCATGCACTTGTGCAAAAGGGCTaGTCCATCAAACAGGTGATA | + |
|
Preference number: 5 (lower is better) Translates to: VSKVSGLIFVIKLVSVHALVQKG*SIKQVI Trigger: TATCACCTGTTTGATGGACAAGCCCTTTTGCACAAG...TGCATGCACAGAGACCAACTTTATCACAAAGATTAACCCAGAGACCTTGGAGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197771.5 |
||
| CDS-3UTR CAA 90 bp | AGCATAAGAGGGCATTGGATTCCGTCTCAGATGGAAGTGAGTCACCAGGTGATCCAGATTTCTTTAGTTTaGACGTTCATCTTACAGAGC | + |
|
Preference number: 5 (lower is better) Translates to: SIRGHWIPSQMEVSHQVIQISLV*TFILQS Trigger: GCTCTGTAAGATGAACGTCAAAACTAAAGAAATCTG...GATCACCTGGTGACTCACTTCCATCTGAGACGGAATCCAATGCCCTCTTATGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
||
| CDS-3UTR CAA 90 bp | GATTCCGTCTCAGATGGAAGTGAGTCACCAGGTGATCTTTGGGAATTGAACACAATTTCACTCAAGTCTTaGGCATTCAGAACCAGGAGA | + |
|
Preference number: 5 (lower is better) Translates to: DSVSDGSESPGDLWELNTISLKS*AFRTRR Trigger: TCTCCTGGTTCTGAATGCCAAAGACTTGAGTGAAAT...TGTGTTCAATTCCCAAAGATCACCTGGTGACTCACTTCCATCTGAGACGGAATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
||
| CDS GCA 90 bp | AGCACAGGTGCCAAATTCTGTTATGACAATCCTCTTCTCAGTCATTaGTCGAACATAAGCATCAGTGCGGATGAATCTTCTGTGGTATGT | + |
|
Preference number: 5 (lower is better) Translates to: STGAKFCYDNPLLSH*SNISISADESSVVC Trigger: ACATACCACAGAAGATTCATCCGCACTGATGCTTATGTTCGAGCAATGACTGAGAAGAGGATTGTCATAACAGAATTTGGCACCTGTGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029824.9 ENSMUST00000196999.5 |
||
| CDS-3UTR CAA 90 bp | ATAGTAATCTTCTCCCACTGGGTAGATATTTACAAGGGCATTGTCAGTAACCTCGTGACATGGCCCTCCTaGAAGTCAAACTTGTGCAAA | + |
|
Preference number: 5 (lower is better) Translates to: IVIFSHWVDIYKGIVSNLVTWPS*KSNLCK Trigger: TTTGCACAAGTTTGACTTCAAGGAGGGCCATGTCAC...GAGGTTACTGACAATGCCCTTGTAAATATCTACCCAGTGGGAGAAGATTACTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197771.5 |
||
| CDS-3UTR CAA 90 bp | TTCAGAAACAGCATAAGAGGGCATTGGATTCCGTCTCAGATGGAAGTGAGTCACTGTCGACCTTGTCAATaGTCAAAGGAAGTACATATC | + |
|
Preference number: 5 (lower is better) Translates to: FRNSIRGHWIPSQMEVSHCRPCQ*SKEVHI Trigger: GATATGTACTTCCTTTGACAATTGACAAGGTCGACA...GTGACTCACTTCCATCTGAGACGGAATCCAATGCCCTCTTATGCTGTTTCTGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
||
| CDS-3UTR CAA 90 bp | TTTGCTGTCTTCAGAAACAGCATAAGAGGGCATTGGATTCCGTCTCAGATGGAACTTCTGACTTGTTTATaGGATCTTCCTTGTCTGCTT | + |
|
Preference number: 5 (lower is better) Translates to: FAVFRNSIRGHWIPSQMELLTCL*DLPCLL Trigger: AAGCAGACAAGGAAGATCCAATAAACAAGTCAGAAG...TTCCATCTGAGACGGAATCCAATGCCCTCTTATGCTGTTTCTGAAGACAGCAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
||
| CDS CCA 90 bp | AGCATCTGGTTGAGAAACAAAGATGGGTTCAGATGGGTAAGAATCTaGCTCTTGCCACATCCAGATTTCTTTAGTTTTGACGTTCATCTT | + |
|
Preference number: 5 (lower is better) Translates to: SIWLRNKDGFRWVRI*LLPHPDFFSFDVHL Trigger: AAGATGAACGTCAAAACTAAAGAAATCTGGATGTGGCAAGAGCCAGATTCTTACCCATCTGAACCCATCTTTGTTTCTCAACCAGATGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029824.9 ENSMUST00000196999.5 |
||
| CDS CCA 90 bp | ATCTTCTTCCAGAGCATCTGGTTGAGAAACAAAGATGGGTTCAGATaGGTAAGAATCTGGCTCTTGCCACATCCAGATTTCTTTAGTTTT | + |
|
Preference number: 5 (lower is better) Translates to: IFFQSIWLRNKDGFR*VRIWLLPHPDFFSF Trigger: AAAACTAAAGAAATCTGGATGTGGCAAGAGCCAGATTCTTACCCATCTGAACCCATCTTTGTTTCTCAACCAGATGCTCTGGAAGAAGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029824.9 ENSMUST00000196999.5 |
||
| CDS-3UTR CAA 90 bp | TGTATATATGAGTACACTTTTGCTGTCTTCAGAAACAGCATAAGAGGGCATTGGTCCTCTTCTCAGTCATaGCTCGAACATAAGCATCAG | + |
|
Preference number: 5 (lower is better) Translates to: CIYEYTFAVFRNSIRGHWSSSQS*LEHKHQ Trigger: CTGATGCTTATGTTCGAGCAATGACTGAGAAGAGGA...CCAATGCCCTCTTATGCTGTTTCTGAAGACAGCAAAAGTGTACTCATATATACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
||
| CDS TCA 90 bp | ACCTTGTCAATTGTCAAAGGAAGTACATATCTCCTGACTTCAGGCTaGGGAGCCTTCATAGCATTTCTTTTAACTTCTTCCCAATTCTCA | + |
|
Preference number: 5 (lower is better) Translates to: TLSIVKGSTYLLTSG*GAFIAFLLTSSQFS Trigger: TGAGAATTGGGAAGAAGTTAAAAGAAATGCTATGAAGGCTCCTCAGCCTGAAGTCAGGAGATATGTACTTCCTTTGACAATTGACAAGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029824.9 ENSMUST00000196999.5 |
||
| CDS-3UTR CAA 90 bp | TGTATATATGAGTACACTTTTGCTGTCTTCAGAAACAGCATAAGAGGGCATTGGGTAAGAATCTGGCTCTaGCCACATCCAGATTTCTTT | + |
|
Preference number: 5 (lower is better) Translates to: CIYEYTFAVFRNSIRGHWVRIWL*PHPDFF Trigger: AAAGAAATCTGGATGTGGCAAGAGCCAGATTCTTAC...CCAATGCCCTCTTATGCTGTTTCTGAAGACAGCAAAAGTGTACTCATATATACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196999.5 |
||
| CDS GCA 90 bp | CTTACAGAGCTTGTCAGGAACAAAGTGATTCAACCCAAGTCCGTATaGATAAGTATAAGGTTTCCCTCCAAATTTCTGGTAATTGATTTG | + |
|
Preference number: 5 (lower is better) Translates to: LTELVRNKVIQPKSV*ISIRFPSKFLVIDL Trigger: CAAATCAATTACCAGAAATTTGGAGGGAAACCTTATACTTATGCATACGGACTTGGGTTGAATCACTTTGTTCCTGACAAGCTCTGTAAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029824.9 ENSMUST00000196999.5 |
||
| CDS GCA 72 bp | GGCATTCAGAACCAGGAGATATGCAGGCTTTTGCCCTaGCCCAGGGCTCACCACCACACTCAGAACCACACC | + |
|
Preference number: 6 (lower is better) Translates to: GIQNQEICRLLP*PRAHHHTQNHT Trigger: GGTGTGGTTCTGAGTGTGGTGGTGAGCCCTGGGGCAGGGCAAAAGCCTGCATATCTCCTGGTTCTGAATGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029824.9 ENSMUST00000196999.5 |
||
| CDS GCA 72 bp | AGAGAACCTCAGGTTCCAGCCATATGGTCTCATCACTaGGCAGAGTGGCTGTGGCAGTTGTATGGGGCAGTG | + |
|
Preference number: 6 (lower is better) Translates to: REPQVPAIWSHH*AEWLWQLYGAV Trigger: CACTGCCCCATACAACTGCCACAGCCACTCTGCGCAGTGATGAGACCATATGGCTGGAACCTGAGGTTCTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029824.9 ENSMUST00000196999.5 |
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| CDS CCA 72 bp | GTCTCATCACTGCGCAGAGTGGCTGTGGCAGTTGTATaGGGCAGTGTGACTAAATTTCTGCCTGTGTCGACC | + |
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Preference number: 6 (lower is better) Translates to: VSSLRRVAVAVV*GSVTKFLPVST Trigger: GGTCGACACAGGCAGAAATTTAGTCACACTGCCCCATACAACTGCCACAGCCACTCTGCGCAGTGATGAGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029824.9 ENSMUST00000196999.5 |
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| CDS TCA 72 bp | TGCGCAGAGTGGCTGTGGCAGTTGTATGGGGCAGTGTaGCTAAATTTCTGCCTGTGTCGACCTTGTCAATTG | + |
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Preference number: 6 (lower is better) Translates to: CAEWLWQLYGAV*LNFCLCRPCQL Trigger: CAATTGACAAGGTCGACACAGGCAGAAATTTAGTCACACTGCCCCATACAACTGCCACAGCCACTCTGCGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029824.9 ENSMUST00000196999.5 |
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| CDS CCA 72 bp | TTCCTGCCTTGGCTTCCCCTTCTGTGGTATGTGACATaGCCCTCCTTGAAGTCAAACTTGTGCAAAAGGGCT | + |
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Preference number: 6 (lower is better) Translates to: FLPWLPLLWYVT*PSLKSNLCKRA Trigger: AGCCCTTTTGCACAAGTTTGACTTCAAGGAGGGCCATGTCACATACCACAGAAGGGGAAGCCAAGGCAGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197771.5 |
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| CDS CAA 90 bp | GGGATATTAGTCTCCACTTCAGCCCTGGCAATTTCACTCAAGTCTTaGGCATTCAGAACCAGGAGATATGCAGGCTTTTGCCCTGCCCCA | + |
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Preference number: 6 (lower is better) Translates to: GILVSTSALAISLKS*AFRTRRYAGFCPAP Trigger: TGGGGCAGGGCAAAAGCCTGCATATCTCCTGGTTCTGAATGCCAAAGACTTGAGTGAAATTGCCAGGGCTGAAGTGGAGACTAATATCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029824.9 ENSMUST00000196999.5 |
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| CDS CAA 72 bp | TGGCTTCCCCTTCTGTGGTATGTGACATGGCCCTCCTaGAAGTCAAACTTGTGCAAAAGGGCTTGTCCATCA | + |
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Preference number: 6 (lower is better) Translates to: WLPLLWYVTWPS*KSNLCKRACPS Trigger: TGATGGACAAGCCCTTTTGCACAAGTTTGACTTCAAGGAGGGCCATGTCACATACCACAGAAGGGGAAGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197771.5 |
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| CDS CCA 72 bp | GCATCAGTGCGGATGAATCTTCTGTGGTATGTGACATaGCCCTCCTTGAAGTCAAACTTGTGCAAAAGGGCT | + |
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Preference number: 6 (lower is better) Translates to: ASVRMNLLWYVT*PSLKSNLCKRA Trigger: AGCCCTTTTGCACAAGTTTGACTTCAAGGAGGGCCATGTCACATACCACAGAAGATTCATCCGCACTGATGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029824.9 ENSMUST00000196999.5 |
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| CDS CAA 72 bp | GTCTCCACTTCAGCCCTGGCAATTTCACTCAAGTCTTaGGCATTCAGAACCAGGAGATATGCAGGCTTTTGC | + |
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Preference number: 6 (lower is better) Translates to: VSTSALAISLKS*AFRTRRYAGFC Trigger: GCAAAAGCCTGCATATCTCCTGGTTCTGAATGCCAAAGACTTGAGTGAAATTGCCAGGGCTGAAGTGGAGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029824.9 ENSMUST00000196999.5 |
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| CDS CAA 90 bp | CACCACACTCAGAACCACACCATCATCTTCTTCCAGAGCATCTGGTaGAGAAACAAAGATGGGTTCAGATGGGTAAGAATCTGGCTCTTG | + |
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Preference number: 6 (lower is better) Translates to: HHTQNHTIIFFQSIW*RNKDGFRWVRIWLL Trigger: CAAGAGCCAGATTCTTACCCATCTGAACCCATCTTTGTTTCTCAACCAGATGCTCTGGAAGAAGATGATGGTGTGGTTCTGAGTGTGGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029824.9 ENSMUST00000196999.5 |
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| CDS CCA 72 bp | TATCAGCAACATGAAGCCAAACCCCCATGCTTTCATTaGACTCGAAACAGTCCATGTAGTTGGCTCCCCAAA | + |
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Preference number: 6 (lower is better) Translates to: YQQHEAKPPCFH*TRNSPCSWLPK Trigger: TTTGGGGAGCCAACTACATGGACTGTTTCGAGTCCAATGAAAGCATGGGGGTTTGGCTTCATGTTGCTGATA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029824.9 ENSMUST00000196999.5 |
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| CDS CAA 72 bp | ATGGCCCTCCTTGAAGTCAAACTTGTGCAAAAGGGCTaGTCCATCAAACAGGTGATAGAAAGGCTCAGATCC | + |
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Preference number: 6 (lower is better) Translates to: MALLEVKLVQKG*SIKQVIERLRS Trigger: GGATCTGAGCCTTTCTATCACCTGTTTGATGGACAAGCCCTTTTGCACAAGTTTGACTTCAAGGAGGGCCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029824.9 ENSMUST00000196999.5 ENSMUST00000197771.5 |
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| CDS CAA 72 bp | CGGATGAATCTTCTGTGGTATGTGACATGGCCCTCCTaGAAGTCAAACTTGTGCAAAAGGGCTTGTCCATCA | + |
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Preference number: 6 (lower is better) Translates to: RMNLLWYVTWPS*KSNLCKRACPS Trigger: TGATGGACAAGCCCTTTTGCACAAGTTTGACTTCAAGGAGGGCCATGTCACATACCACAGAAGATTCATCCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029824.9 ENSMUST00000196999.5 |
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| CDS CAA 90 bp | GGCTTGAAACGATCACTGCAGGGGAACTGCACAACAACTTCTGACTaGTTTATTGGATCTTCCTTGTCTGCTTTCAGTGGAGGGATCTTA | + |
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Preference number: 6 (lower is better) Translates to: GLKRSLQGNCTTTSD*FIGSSLSAFSGGIL Trigger: TAAGATCCCTCCACTGAAAGCAGACAAGGAAGATCCAATAAACAAGTCAGAAGTTGTTGTGCAGTTCCCCTGCAGTGATCGTTTCAAGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029824.9 ENSMUST00000196999.5 |
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| CDS TCA 72 bp | TGGGAGTCAGACCAAAACTGTGTACATAAGATGGCTTaGAACGATCACTGCAGGGGAACTGCACAACAACTT | + |
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Preference number: 6 (lower is better) Translates to: WESDQNCVHKMA*NDHCRGTAQQL Trigger: AAGTTGTTGTGCAGTTCCCCTGCAGTGATCGTTTCAAGCCATCTTATGTACACAGTTTTGGTCTGACTCCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029824.9 ENSMUST00000196999.5 |
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| CDS CAA 72 bp | TGCAGGGGAACTGCACAACAACTTCTGACTTGTTTATaGGATCTTCCTTGTCTGCTTTCAGTGGAGGGATCT | + |
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Preference number: 6 (lower is better) Translates to: CRGTAQQLLTCL*DLPCLLSVEGS Trigger: AGATCCCTCCACTGAAAGCAGACAAGGAAGATCCAATAAACAAGTCAGAAGTTGTTGTGCAGTTCCCCTGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029824.9 ENSMUST00000196999.5 |
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| CDS CAA 72 bp | CGATCACTGCAGGGGAACTGCACAACAACTTCTGACTaGTTTATTGGATCTTCCTTGTCTGCTTTCAGTGGA | + |
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Preference number: 6 (lower is better) Translates to: RSLQGNCTTTSD*FIGSSLSAFSG Trigger: TCCACTGAAAGCAGACAAGGAAGATCCAATAAACAAGTCAGAAGTTGTTGTGCAGTTCCCCTGCAGTGATCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029824.9 ENSMUST00000196999.5 |
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| CDS CAA 90 bp | GTATGTGACATGGCCCTCCTTGAAGTCAAACTTGTGCAAAAGGGCTaGTCCATCAAACAGGTGATAGAAAGGCTCAGATCCAACTTCAAA | + |
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Preference number: 6 (lower is better) Translates to: VCDMALLEVKLVQKG*SIKQVIERLRSNFK Trigger: TTTGAAGTTGGATCTGAGCCTTTCTATCACCTGTTTGATGGACAAGCCCTTTTGCACAAGTTTGACTTCAAGGAGGGCCATGTCACATAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029824.9 ENSMUST00000196999.5 ENSMUST00000197771.5 |
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| CDS CAA 90 bp | TGGTTGAGAAACAAAGATGGGTTCAGATGGGTAAGAATCTGGCTCTaGCCACATCCAGATTTCTTTAGTTTTGACGTTCATCTTACAGAG | + |
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Preference number: 6 (lower is better) Translates to: WLRNKDGFRWVRIWL*PHPDFFSFDVHLTE Trigger: CTCTGTAAGATGAACGTCAAAACTAAAGAAATCTGGATGTGGCAAGAGCCAGATTCTTACCCATCTGAACCCATCTTTGTTTCTCAACCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029824.9 ENSMUST00000196999.5 |
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| CDS TCA 72 bp | ATTGTCAAAGGAAGTACATATCTCCTGACTTCAGGCTaGGGAGCCTTCATAGCATTTCTTTTAACTTCTTCC | + |
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Preference number: 6 (lower is better) Translates to: IVKGSTYLLTSG*GAFIAFLLTSS Trigger: GGAAGAAGTTAAAAGAAATGCTATGAAGGCTCCTCAGCCTGAAGTCAGGAGATATGTACTTCCTTTGACAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029824.9 ENSMUST00000196999.5 |
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| CDS GCA 72 bp | CTTGTCAGGAACAAAGTGATTCAACCCAAGTCCGTATaGATAAGTATAAGGTTTCCCTCCAAATTTCTGGTA | + |
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Preference number: 6 (lower is better) Translates to: LVRNKVIQPKSV*ISIRFPSKFLV Trigger: TACCAGAAATTTGGAGGGAAACCTTATACTTATGCATACGGACTTGGGTTGAATCACTTTGTTCCTGACAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029824.9 ENSMUST00000196999.5 |
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| CDS CAA 72 bp | AACAAAGATGGGTTCAGATGGGTAAGAATCTGGCTCTaGCCACATCCAGATTTCTTTAGTTTTGACGTTCAT | + |
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Preference number: 6 (lower is better) Translates to: NKDGFRWVRIWL*PHPDFFSFDVH Trigger: ATGAACGTCAAAACTAAAGAAATCTGGATGTGGCAAGAGCCAGATTCTTACCCATCTGAACCCATCTTTGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029824.9 ENSMUST00000196999.5 |
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