Pregenerated sensors for RPE (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026005Ensembl transcript IDs: ENSMUST00000027157.10, ENSMUST00000113995.2, ENSMUST00000142920.8, ENSMUST00000151016.2
Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGCCCGTCGTCGCACAGGGGCGCCGTGCACCCAACAGGCGCTCGCTaGGGTGCAGCGACGCCGACCCGCGCGGCCAGCCCGCCCCGAGCC | + |
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Preference number: 1 (lower is better) Translates to: SPSSHRGAVHPTGAR*GAATPTRAASPPRA Trigger: GGCTCGGGGCGGGCTGGCCGCGCGGGTCGGCGTCGCTGCACCTCAGCGAGCGCCTGTTGGGTGCACGGCGCCCCTGTGCGACGACGGGCT 79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000151016.2 |
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| 3UTR CCA 90 bp | GTTCTATTGGTGTCCAACCCAGTGGCACTTCCAAGAGAAACTGTATaGTTCCTTTCTGCCTCTGGCTATTTCATTCCCCTCAGAAGGGTG | + |
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Preference number: 1 (lower is better) Translates to: VLLVSNPVALPRETV*FLSASGYFIPLRRV Trigger: CACCCTTCTGAGGGGAATGAAATAGCCAGAGGCAGAAAGGAACCATACAGTTTCTCTTGGAAGTGCCACTGGGTTGGACACCAATAGAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR CCA 90 bp | GTTTGTAGTCAGAGCAGTAGTACACACCAGAAAACTGCTTCTGACTaGACCCTTTCTATGTGCCAGGCTACTGGAGAGCTTTACGGTTTT | + |
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Preference number: 1 (lower is better) Translates to: VCSQSSSTHQKTASD*TLSMCQATGELYGF Trigger: AAAACCGTAAAGCTCTCCAGTAGCCTGGCACATAGAAAGGGTCCAGTCAGAAGCAGTTTTCTGGTGTGTACTACTGCTCTGACTACAAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR-3UTR TCA 90 bp | CACCAGAAAACTGCTTCTGACTGGACCCTTTCTATGTGCCAGGCTACTGGAGAGAGAAGGGTGGTTGAGTaGGACCCAGGGGCAGGAAGG | + |
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Preference number: 2 (lower is better) Translates to: HQKTASDWTLSMCQATGERRVVE*DPGAGR Trigger: CCTTCCTGCCCCTGGGTCTCACTCAACCACCCTTCT...CTCTCCAGTAGCCTGGCACATAGAAAGGGTCCAGTCAGAAGCAGTTTTCTGGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR-3UTR TCA 90 bp | ATAGGGTACTCTGTTCTATTGGTGTCCAACCCAGTGGCACTTCCAAGAGAAACTAGAAGGGTGGTTGAGTaGGACCCAGGGGCAGGAAGG | + |
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Preference number: 2 (lower is better) Translates to: IGYSVLLVSNPVALPRETRRVVE*DPGAGR Trigger: CCTTCCTGCCCCTGGGTCTCACTCAACCACCCTTCT...AGTTTCTCTTGGAAGTGCCACTGGGTTGGACACCAATAGAACAGAGTACCCTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR-3UTR TCA 90 bp | CACCAGAAAACTGCTTCTGACTGGACCCTTTCTATGTGCCAGGCTACTGGAGAGTGGGTCCTCAACCAGTaGACCTTGGGCATCATGTCT | + |
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Preference number: 2 (lower is better) Translates to: HQKTASDWTLSMCQATGEWVLNQ*TLGIMS Trigger: AGACATGATGCCCAAGGTTCACTGGTTGAGGACCCA...CTCTCCAGTAGCCTGGCACATAGAAAGGGTCCAGTCAGAAGCAGTTTTCTGGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142920.8 |
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| 3UTR-3UTR GCA 90 bp | TGTCCAACCCAGTGGCACTTCCAAGAGAAACTGTATGGTTCCTTTCTGCCTCTGTGGACCCTTTCTATGTaGCAGGCTACTGGAGAGCTT | + |
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Preference number: 2 (lower is better) Translates to: CPTQWHFQEKLYGSFLPLWTLSM*QATGEL Trigger: AAGCTCTCCAGTAGCCTGGCACATAGAAAGGGTCCA...CAGAGGCAGAAAGGAACCATACAGTTTCTCTTGGAAGTGCCACTGGGTTGGACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR-3UTR CCA 90 bp | CACCAGAAAACTGCTTCTGACTGGACCCTTTCTATGTGCCAGGCTACTGGAGAGCCAAGAGAAACTGTATaGTTCCTTTCTGCCTCTGGC | + |
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Preference number: 2 (lower is better) Translates to: HQKTASDWTLSMCQATGEPRETV*FLSASG Trigger: GCCAGAGGCAGAAAGGAACCATACAGTTTCTCTTGG...CTCTCCAGTAGCCTGGCACATAGAAAGGGTCCAGTCAGAAGCAGTTTTCTGGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR-3UTR GCA 90 bp | TTGGTGTCCAACCCAGTGGCACTTCCAAGAGAAACTGTATGGTTCCTTTCTGCCTGTATGGTTCCTTTCTaGCTCTGGCTATTTCATTCC | + |
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Preference number: 2 (lower is better) Translates to: LVSNPVALPRETVWFLSACMVPF*LWLFHS Trigger: GGAATGAAATAGCCAGAGGCAGAAAGGAACCATACA...GGCAGAAAGGAACCATACAGTTTCTCTTGGAAGTGCCACTGGGTTGGACACCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR-3UTR GCA 90 bp | AACTGTATGGTTCCTTTCTGCCTCTGGCTATTTCATTCCCCTCAGAAGGGTGGTTGTATGGTTCCTTTCTaGCTCTGGCTATTTCATTCC | + |
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Preference number: 2 (lower is better) Translates to: NCMVPFCLWLFHSPQKGGCMVPF*LWLFHS Trigger: GGAATGAAATAGCCAGAGGCAGAAAGGAACCATACA...ACCACCCTTCTGAGGGGAATGAAATAGCCAGAGGCAGAAAGGAACCATACAGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR-3UTR CCA 90 bp | TTCCAAGAGAAACTGTATGGTTCCTTTCTGCCTCTGGCTATTTCATTCCCCTCAGAAAGGTATATTGATTaGCACCTGCCACAGCCATTG | + |
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Preference number: 2 (lower is better) Translates to: FQEKLYGSFLPLAISFPSERYID*HLPQPL Trigger: CAATGGCTGTGGCAGGTGCCAATCAATATACCTTTC...TGAGGGGAATGAAATAGCCAGAGGCAGAAAGGAACCATACAGTTTCTCTTGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142920.8 |
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| 3UTR-3UTR TCA 90 bp | TTCCAAGAGAAACTGTATGGTTCCTTTCTGCCTCTGGCTATTTCATTCCCCTCACAGAGTAGTCTGCTGTaGCAAAGTAAATACCTTGAT | + |
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Preference number: 2 (lower is better) Translates to: FQEKLYGSFLPLAISFPSQSSLL*QSKYLD Trigger: ATCAAGGTATTTACTTTGTCACAGCAGACTACTCTG...TGAGGGGAATGAAATAGCCAGAGGCAGAAAGGAACCATACAGTTTCTCTTGGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR-3UTR GCA 90 bp | AGAATAGGGTACTCTGTTCTATTGGTGTCCAACCCAGTGGCACTTCCAAGAGAAAATGACAGAGTAGTCTaGTGTGACAAAGTAAATACC | + |
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Preference number: 2 (lower is better) Translates to: RIGYSVLLVSNPVALPRENDRVV*CDKVNT Trigger: GGTATTTACTTTGTCACAGCAGACTACTCTGTCATT...TTCTCTTGGAAGTGCCACTGGGTTGGACACCAATAGAACAGAGTACCCTATTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR-3UTR GCA 90 bp | TTCCAAGAGAAACTGTATGGTTCCTTTCTGCCTCTGGCTATTTCATTCCCCTCAAATGTGGATGTCATTTaGTTTAGGAATAAACCAGGG | + |
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Preference number: 2 (lower is better) Translates to: FQEKLYGSFLPLAISFPSNVDVI*FRNKPG Trigger: CCCTGGTTTATTCCTAAAGCAAATGACATCCACATT...TGAGGGGAATGAAATAGCCAGAGGCAGAAAGGAACCATACAGTTTCTCTTGGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR-3UTR GCA 90 bp | TTCCAAGAGAAACTGTATGGTTCCTTTCTGCCTCTGGCTATTTCATTCCCCTCAAATGACAGAGTAGTCTaGTGTGACAAAGTAAATACC | + |
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Preference number: 2 (lower is better) Translates to: FQEKLYGSFLPLAISFPSNDRVV*CDKVNT Trigger: GGTATTTACTTTGTCACAGCAGACTACTCTGTCATT...TGAGGGGAATGAAATAGCCAGAGGCAGAAAGGAACCATACAGTTTCTCTTGGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR-3UTR CCA 90 bp | TTCCAAGAGAAACTGTATGGTTCCTTTCTGCCTCTGGCTATTTCATTCCCCTCAATTGATTTTAATCACTaGAATGCAGCACTGCTTCGA | + |
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Preference number: 2 (lower is better) Translates to: FQEKLYGSFLPLAISFPSIDFNH*NAALLR Trigger: TCGAAGCAGTGCTGCATTCCAGTGATTAAAATCAAT...TGAGGGGAATGAAATAGCCAGAGGCAGAAAGGAACCATACAGTTTCTCTTGGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR-3UTR CCA 90 bp | AGGAATGACAGAGTAGTCTGCTGTGACAAAGTAAATACCTTGATAAGTCTGTGCTATGTGCCAGGCTACTaGAGAGCTTTACGGTTTTTA | + |
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Preference number: 2 (lower is better) Translates to: RNDRVVCCDKVNTLISLCYVPGY*RALRFL Trigger: TAAAAACCGTAAAGCTCTCCAGTAGCCTGGCACATA...GCACAGACTTATCAAGGTATTTACTTTGTCACAGCAGACTACTCTGTCATTCCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR-3UTR CCA 90 bp | CAAAGAAAGGTTACTCAATTTGTAGTTCCCATACTACTGAAAATCCTGGCCACTAAAACTGCTTCTGACTaGACCCTTTCTATGTGCCAG | + |
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Preference number: 2 (lower is better) Translates to: QRKVTQFVVPILLKILATKTASD*TLSMCQ Trigger: CTGGCACATAGAAAGGGTCCAGTCAGAAGCAGTTTT...AGTGGCCAGGATTTTCAGTAGTATGGGAACTACAAATTGAGTAACCTTTCTTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR-3UTR CCA 90 bp | AGAGTAGTCTGCTGTGACAAAGTAAATACCTTGATAAGTCTGTGCTTGCATTTCTTCATGAGCAGAAACTaGGTTCCTTGTGGCTTCATC | + |
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Preference number: 2 (lower is better) Translates to: RVVCCDKVNTLISLCLHFFMSRN*VPCGFI Trigger: GATGAAGCCACAAGGAACCCAGTTTCTGCTCATGAA...GAAATGCAAGCACAGACTTATCAAGGTATTTACTTTGTCACAGCAGACTACTCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142920.8 |
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| 3UTR-3UTR TCA 90 bp | GCAGGAAGGAATGACAGAGTAGTCTGCTGTGACAAAGTAAATACCTTGATAAGTCAGAGTAGTCTGCTGTaGCAAAGTAAATACCTTGAT | + |
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Preference number: 2 (lower is better) Translates to: AGRNDRVVCCDKVNTLISQSSLL*QSKYLD Trigger: ATCAAGGTATTTACTTTGTCACAGCAGACTACTCTG...ACTTATCAAGGTATTTACTTTGTCACAGCAGACTACTCTGTCATTCCTTCCTGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR-3UTR TCA 90 bp | AGGAATGACAGAGTAGTCTGCTGTGACAAAGTAAATACCTTGATAAGTCTGTGCCAGAGTAGTCTGCTGTaGCAAAGTAAATACCTTGAT | + |
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Preference number: 2 (lower is better) Translates to: RNDRVVCCDKVNTLISLCQSSLL*QSKYLD Trigger: ATCAAGGTATTTACTTTGTCACAGCAGACTACTCTG...GCACAGACTTATCAAGGTATTTACTTTGTCACAGCAGACTACTCTGTCATTCCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR-3UTR GCA 90 bp | CAAAGAAAGGTTACTCAATTTGTAGTTCCCATACTACTGAAAATCCTGGCCACTTGTATGGTTCCTTTCTaGCTCTGGCTATTTCATTCC | + |
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Preference number: 2 (lower is better) Translates to: QRKVTQFVVPILLKILATCMVPF*LWLFHS Trigger: GGAATGAAATAGCCAGAGGCAGAAAGGAACCATACA...AGTGGCCAGGATTTTCAGTAGTATGGGAACTACAAATTGAGTAACCTTTCTTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR-3UTR CCA 90 bp | TTCTATTGGTGTCCAACCCAGTGGCACTTCCAAGAGAAACTGTATGGTTCCTTTGAACTAGAGAAAATGTaGATGTCATTTGCTTTAGGA | + |
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Preference number: 2 (lower is better) Translates to: FYWCPTQWHFQEKLYGSFELEKM*MSFALG Trigger: TCCTAAAGCAAATGACATCCACATTTTCTCTAGTTC...AAAGGAACCATACAGTTTCTCTTGGAAGTGCCACTGGGTTGGACACCAATAGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR-3UTR GCA 90 bp | GCAGGAAGGAATGACAGAGTAGTCTGCTGTGACAAAGTAAATACCTTGATAAGTAATGTGGATGTCATTTaGTTTAGGAATAAACCAGGG | + |
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Preference number: 2 (lower is better) Translates to: AGRNDRVVCCDKVNTLISNVDVI*FRNKPG Trigger: CCCTGGTTTATTCCTAAAGCAAATGACATCCACATT...ACTTATCAAGGTATTTACTTTGTCACAGCAGACTACTCTGTCATTCCTTCCTGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR-3UTR CCA 90 bp | AAAGCCCAAGCAAGCTCTCTATTCCATGCCTATTTGTCAGTGTTCTTATTTTATTATGTGCCAGGCTACTaGAGAGCTTTACGGTTTTTA | + |
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Preference number: 2 (lower is better) Translates to: KAQASSLFHAYLSVFLFYYVPGY*RALRFL Trigger: TAAAAACCGTAAAGCTCTCCAGTAGCCTGGCACATA...ATAAAATAAGAACACTGACAAATAGGCATGGAATAGAGAGCTTGCTTGGGCTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR-3UTR TCA 90 bp | CAAAGAAAGGTTACTCAATTTGTAGTTCCCATACTACTGAAAATCCTGGCCACTCTCATAAAACAGACATaGTGCTTGCCATTTTGTGTT | + |
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Preference number: 2 (lower is better) Translates to: QRKVTQFVVPILLKILATLIKQT*CLPFCV Trigger: AACACAAAATGGCAAGCATCATGTCTGTTTTATGAG...AGTGGCCAGGATTTTCAGTAGTATGGGAACTACAAATTGAGTAACCTTTCTTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR-3UTR GCA 90 bp | CAAAGAAAGGTTACTCAATTTGTAGTTCCCATACTACTGAAAATCCTGGCCACTAAGCTCTCTATTCCATaGCTATTTGTCAGTGTTCTT | + |
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Preference number: 2 (lower is better) Translates to: QRKVTQFVVPILLKILATKLSIP*LFVSVL Trigger: AAGAACACTGACAAATAGGCATGGAATAGAGAGCTT...AGTGGCCAGGATTTTCAGTAGTATGGGAACTACAAATTGAGTAACCTTTCTTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR-3UTR GCA 90 bp | CCAAGCAAGCTCTCTATTCCATGCCTATTTGTCAGTGTTCTTATTTTATTACTAATATTGATTGGCACCTaGCACAGCCATTGGTTTTAC | + |
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Preference number: 2 (lower is better) Translates to: PSKLSIPCLFVSVLILLLILIGT*HSHWFY Trigger: GTAAAACCAATGGCTGTGGCAGGTGCCAATCAATAT...TAGTAATAAAATAAGAACACTGACAAATAGGCATGGAATAGAGAGCTTGCTTGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000142920.8 |
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| 3UTR-3UTR CCA 90 bp | CAAAGAAAGGTTACTCAATTTGTAGTTCCCATACTACTGAAAATCCTGGCCACTATTGATTTTAATCACTaGAATGCAGCACTGCTTCGA | + |
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Preference number: 2 (lower is better) Translates to: QRKVTQFVVPILLKILATIDFNH*NAALLR Trigger: TCGAAGCAGTGCTGCATTCCAGTGATTAAAATCAAT...AGTGGCCAGGATTTTCAGTAGTATGGGAACTACAAATTGAGTAACCTTTCTTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR-3UTR CCA 90 bp | AGGAATGACAGAGTAGTCTGCTGTGACAAAGTAAATACCTTGATAAGTCTGTGCGAACTAGAGAAAATGTaGATGTCATTTGCTTTAGGA | + |
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Preference number: 2 (lower is better) Translates to: RNDRVVCCDKVNTLISLCELEKM*MSFALG Trigger: TCCTAAAGCAAATGACATCCACATTTTCTCTAGTTC...GCACAGACTTATCAAGGTATTTACTTTGTCACAGCAGACTACTCTGTCATTCCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR-3UTR GCA 90 bp | GTCTCATTCCATTCATATTCTCAGGCATATAAGCAAATCACAAATGACATGAACAATGTGGATGTCATTTaGTTTAGGAATAAACCAGGG | + |
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Preference number: 2 (lower is better) Translates to: VSFHSYSQAYKQITNDMNNVDVI*FRNKPG Trigger: CCCTGGTTTATTCCTAAAGCAAATGACATCCACATT...GTTCATGTCATTTGTGATTTGCTTATATGCCTGAGAATATGAATGGAATGAGAC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR-3UTR CCA 90 bp | GTCTCATTCCATTCATATTCTCAGGCATATAAGCAAATCACAAATGACATGAACATTGATTTTAATCACTaGAATGCAGCACTGCTTCGA | + |
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Preference number: 2 (lower is better) Translates to: VSFHSYSQAYKQITNDMNIDFNH*NAALLR Trigger: TCGAAGCAGTGCTGCATTCCAGTGATTAAAATCAAT...GTTCATGTCATTTGTGATTTGCTTATATGCCTGAGAATATGAATGGAATGAGAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR-3UTR CCA 90 bp | CCAAGCAAGCTCTCTATTCCATGCCTATTTGTCAGTGTTCTTATTTTATTACTACCATCTATCCATTCTTaGAGTCAAAATCTATACTTC | + |
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Preference number: 2 (lower is better) Translates to: PSKLSIPCLFVSVLILLLPSIHS*SQNLYF Trigger: GAAGTATAGATTTTGACTCCAAGAATGGATAGATGG...TAGTAATAAAATAAGAACACTGACAAATAGGCATGGAATAGAGAGCTTGCTTGG 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR TCA 72 bp | TCGCACAGGGGCGCCGTGCACCCAACAGGCGCTCGCTaGGGTGCAGCGACGCCGACCCGCGCGGCCAGCCCG | + |
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Preference number: 3 (lower is better) Translates to: SHRGAVHPTGAR*GAATPTRAASP Trigger: CGGGCTGGCCGCGCGGGTCGGCGTCGCTGCACCTCAGCGAGCGCCTGTTGGGTGCACGGCGCCCCTGTGCGA 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151016.2 |
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| 3UTR GCA 72 bp | AGGACCGGGCCCCAAAGTCAGCCAGGGCCGGCTCGGTaGCCTCGGCAGCGCGCTTGGCCAGGCAGCCCGTCG | + |
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Preference number: 3 (lower is better) Translates to: RTGPQSQPGPAR*PRQRAWPGSPS Trigger: CGACGGGCTGCCTGGCCAAGCGCGCTGCCGAGGGCACCGAGCCGGCCCTGGCTGACTTTGGGGCCCGGTCCT 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151016.2 |
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| 3UTR-3UTR CAA 90 bp | TTGGGCCTCAGTTTCTCTACGAGTTCACCAGAGGAAGATCCTGAACACTGGAGGCCCTCGGCAGCGCGCTaGGCCAGGCAGCCCGTCGTC | + |
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Preference number: 3 (lower is better) Translates to: LGLSFSTSSPEEDPEHWRPSAAR*ARQPVV Trigger: GACGACGGGCTGCCTGGCCAAGCGCGCTGCCGAGGG...CCTCCAGTGTTCAGGATCTTCCTCTGGTGAACTCGTAGAGAAACTGAGGCCCAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151016.2 |
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| 3UTR CCA 72 bp | ACGAGTTCACCAGAGGAAGATCCTGAACACTGGAGGTaGCTCCCGGGTCCTATCACCACAGGTTACGGGGTG | + |
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Preference number: 3 (lower is better) Translates to: TSSPEEDPEHWR*LPGPITTGYGV Trigger: CACCCCGTAACCTGTGGTGATAGGACCCGGGAGCCACCTCCAGTGTTCAGGATCTTCCTCTGGTGAACTCGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151016.2 |
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| 3UTR-3UTR CAA 90 bp | TGTCCAACCCAGTGGCACTTCCAAGAGAAACTGTATGGTTCCTTTCTGCCTCTGCCCTCAGAAGGGTGGTaGAGTGAGACCCAGGGGCAG | + |
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Preference number: 3 (lower is better) Translates to: CPTQWHFQEKLYGSFLPLPSEGW*SETQGQ Trigger: CTGCCCCTGGGTCTCACTCAACCACCCTTCTGAGGG...CAGAGGCAGAAAGGAACCATACAGTTTCTCTTGGAAGTGCCACTGGGTTGGACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR TCA 72 bp | CCTCAGTTTCTCTACGAGTTCACCAGAGGAAGATCCTaGACACTGGAGGTGGCTCCCGGGTCCTATCACCAC | + |
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Preference number: 3 (lower is better) Translates to: PQFLYEFTRGRS*TLEVAPGSYHH Trigger: GTGGTGATAGGACCCGGGAGCCACCTCCAGTGTTCAGGATCTTCCTCTGGTGAACTCGTAGAGAAACTGAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151016.2 |
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| 3UTR CCA 72 bp | TTCTCTACGAGTTCACCAGAGGAAGATCCTGAACACTaGAGGTGGCTCCCGGGTCCTATCACCACAGGTTAC | + |
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Preference number: 3 (lower is better) Translates to: FSTSSPEEDPEH*RWLPGPITTGY Trigger: GTAACCTGTGGTGATAGGACCCGGGAGCCACCTCCAGTGTTCAGGATCTTCCTCTGGTGAACTCGTAGAGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151016.2 |
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| 3UTR-3UTR CAA 90 bp | ATAGGGTACTCTGTTCTATTGGTGTCCAACCCAGTGGCACTTCCAAGAGAAACTCCCTCAGAAGGGTGGTaGAGTGAGACCCAGGGGCAG | + |
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Preference number: 3 (lower is better) Translates to: IGYSVLLVSNPVALPRETPSEGW*SETQGQ Trigger: CTGCCCCTGGGTCTCACTCAACCACCCTTCTGAGGG...AGTTTCTCTTGGAAGTGCCACTGGGTTGGACACCAATAGAACAGAGTACCCTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR TCA 72 bp | TCTGGCTATTTCATTCCCCTCAGAAGGGTGGTTGAGTaGGACCCAGGGGCAGGAAGGAATGACAGAGTAGTC | + |
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Preference number: 3 (lower is better) Translates to: SGYFIPLRRVVE*DPGAGRNDRVV Trigger: GACTACTCTGTCATTCCTTCCTGCCCCTGGGTCTCACTCAACCACCCTTCTGAGGGGAATGAAATAGCCAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR CCA 72 bp | TTTCTGCCTCTGGCTATTTCATTCCCCTCAGAAGGGTaGTTGAGTGAGACCCAGGGGCAGGAAGGAATGACA | + |
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Preference number: 3 (lower is better) Translates to: FLPLAISFPSEG*LSETQGQEGMT Trigger: TGTCATTCCTTCCTGCCCCTGGGTCTCACTCAACCACCCTTCTGAGGGGAATGAAATAGCCAGAGGCAGAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR-3UTR CAA 90 bp | CACCAGAAAACTGCTTCTGACTGGACCCTTTCTATGTGCCAGGCTACTGGAGAGCAGAAACTGGGTTCCTaGTGGCTTCATCGATCAAGG | + |
|
Preference number: 3 (lower is better) Translates to: HQKTASDWTLSMCQATGEQKLGS*WLHRSR Trigger: CCTTGATCGATGAAGCCACAAGGAACCCAGTTTCTG...CTCTCCAGTAGCCTGGCACATAGAAAGGGTCCAGTCAGAAGCAGTTTTCTGGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142920.8 |
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| 3UTR CCA 72 bp | GTGTCCAACCCAGTGGCACTTCCAAGAGAAACTGTATaGTTCCTTTCTGCCTCTGGCTATTTCATTCCCCTC | + |
|
Preference number: 3 (lower is better) Translates to: VSNPVALPRETV*FLSASGYFIPL Trigger: GAGGGGAATGAAATAGCCAGAGGCAGAAAGGAACCATACAGTTTCTCTTGGAAGTGCCACTGGGTTGGACAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR CCA 72 bp | CAGAGCAGTAGTACACACCAGAAAACTGCTTCTGACTaGACCCTTTCTATGTGCCAGGCTACTGGAGAGCTT | + |
|
Preference number: 3 (lower is better) Translates to: QSSSTHQKTASD*TLSMCQATGEL Trigger: AAGCTCTCCAGTAGCCTGGCACATAGAAAGGGTCCAGTCAGAAGCAGTTTTCTGGTGTGTACTACTGCTCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR GCA 72 bp | AGTGGCACTTCCAAGAGAAACTGTATGGTTCCTTTCTaGCTCTGGCTATTTCATTCCCCTCAGAAGGGTGGT | + |
|
Preference number: 3 (lower is better) Translates to: SGTSKRNCMVPF*LWLFHSPQKGG Trigger: ACCACCCTTCTGAGGGGAATGAAATAGCCAGAGGCAGAAAGGAACCATACAGTTTCTCTTGGAAGTGCCACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR-3UTR CAA 90 bp | CACCAGAAAACTGCTTCTGACTGGACCCTTTCTATGTGCCAGGCTACTGGAGAGTTGATAAGTCTGTGCTaGCATTTCAGAAACCCTAGG | + |
|
Preference number: 3 (lower is better) Translates to: HQKTASDWTLSMCQATGELISLC*HFRNPR Trigger: CCTAGGGTTTCTGAAATGCAAGCACAGACTTATCAA...CTCTCCAGTAGCCTGGCACATAGAAAGGGTCCAGTCAGAAGCAGTTTTCTGGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR-3UTR CAA 90 bp | AAAGCCCAAGCAAGCTCTCTATTCCATGCCTATTTGTCAGTGTTCTTATTTTATCCCTCAGAAGGGTGGTaGAGTGAGACCCAGGGGCAG | + |
|
Preference number: 3 (lower is better) Translates to: KAQASSLFHAYLSVFLFYPSEGW*SETQGQ Trigger: CTGCCCCTGGGTCTCACTCAACCACCCTTCTGAGGG...ATAAAATAAGAACACTGACAAATAGGCATGGAATAGAGAGCTTGCTTGGGCTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR-3UTR CAA 90 bp | CACCAGAAAACTGCTTCTGACTGGACCCTTTCTATGTGCCAGGCTACTGGAGAGGCTTGCCATTTTGTGTaGAGCATCTTCTACAGTCTA | + |
|
Preference number: 3 (lower is better) Translates to: HQKTASDWTLSMCQATGEACHFV*SIFYSL Trigger: TAGACTGTAGAAGATGCTCAACACAAAATGGCAAGC...CTCTCCAGTAGCCTGGCACATAGAAAGGGTCCAGTCAGAAGCAGTTTTCTGGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
||
| 3UTR-3UTR CAA 90 bp | TGTCCAACCCAGTGGCACTTCCAAGAGAAACTGTATGGTTCCTTTCTGCCTCTGTTGATAAGTCTGTGCTaGCATTTCAGAAACCCTAGG | + |
|
Preference number: 3 (lower is better) Translates to: CPTQWHFQEKLYGSFLPLLISLC*HFRNPR Trigger: CCTAGGGTTTCTGAAATGCAAGCACAGACTTATCAA...CAGAGGCAGAAAGGAACCATACAGTTTCTCTTGGAAGTGCCACTGGGTTGGACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
||
| 3UTR-3UTR CAA 90 bp | TGTCCAACCCAGTGGCACTTCCAAGAGAAACTGTATGGTTCCTTTCTGCCTCTGACGTTTCTTAGTAAGTaGATAACAGCTCTGGGGTCA | + |
|
Preference number: 3 (lower is better) Translates to: CPTQWHFQEKLYGSFLPLTFLSK*ITALGS Trigger: TGACCCCAGAGCTGTTATCAACTTACTAAGAAACGT...CAGAGGCAGAAAGGAACCATACAGTTTCTCTTGGAAGTGCCACTGGGTTGGACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142920.8 |
||
| 3UTR-3UTR CAA 90 bp | TTCTATTGGTGTCCAACCCAGTGGCACTTCCAAGAGAAACTGTATGGTTCCTTTGCAGCACTGCTTCGATaGCAATGTGATTTGGTAGTC | + |
|
Preference number: 3 (lower is better) Translates to: FYWCPTQWHFQEKLYGSFAALLR*QCDLVV Trigger: GACTACCAAATCACATTGCAATCGAAGCAGTGCTGC...AAAGGAACCATACAGTTTCTCTTGGAAGTGCCACTGGGTTGGACACCAATAGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR-3UTR CAA 90 bp | CACCAGAAAACTGCTTCTGACTGGACCCTTTCTATGTGCCAGGCTACTGGAGAGGACAAAGTAAATACCTaGATAAGTCTGTGCTTGCAT | + |
|
Preference number: 3 (lower is better) Translates to: HQKTASDWTLSMCQATGEDKVNT*ISLCLH Trigger: ATGCAAGCACAGACTTATCAAGGTATTTACTTTGTC...CTCTCCAGTAGCCTGGCACATAGAAAGGGTCCAGTCAGAAGCAGTTTTCTGGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR-3UTR CAA 90 bp | AACTGTATGGTTCCTTTCTGCCTCTGGCTATTTCATTCCCCTCAGAAGGGTGGTGCTTGCCATTTTGTGTaGAGCATCTTCTACAGTCTA | + |
|
Preference number: 3 (lower is better) Translates to: NCMVPFCLWLFHSPQKGGACHFV*SIFYSL Trigger: TAGACTGTAGAAGATGCTCAACACAAAATGGCAAGC...ACCACCCTTCTGAGGGGAATGAAATAGCCAGAGGCAGAAAGGAACCATACAGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR-3UTR CAA 90 bp | AGAATAGGGTACTCTGTTCTATTGGTGTCCAACCCAGTGGCACTTCCAAGAGAATTGATAAGTCTGTGCTaGCATTTCAGAAACCCTAGG | + |
|
Preference number: 3 (lower is better) Translates to: RIGYSVLLVSNPVALPRELISLC*HFRNPR Trigger: CCTAGGGTTTCTGAAATGCAAGCACAGACTTATCAA...TTCTCTTGGAAGTGCCACTGGGTTGGACACCAATAGAACAGAGTACCCTATTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR-3UTR CAA 90 bp | AGGAATGACAGAGTAGTCTGCTGTGACAAAGTAAATACCTTGATAAGTCTGTGCGCAGCACTGCTTCGATaGCAATGTGATTTGGTAGTC | + |
|
Preference number: 3 (lower is better) Translates to: RNDRVVCCDKVNTLISLCAALLR*QCDLVV Trigger: GACTACCAAATCACATTGCAATCGAAGCAGTGCTGC...GCACAGACTTATCAAGGTATTTACTTTGTCACAGCAGACTACTCTGTCATTCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR GCA 72 bp | GTCTGCTGTGACAAAGTAAATACCTTGATAAGTCTGTaGTTGCATTTCAGAAACCCTAGGCTTCATACATTG | + |
|
Preference number: 3 (lower is better) Translates to: VCCDKVNTLISL*LHFRNPRLHTL Trigger: CAATGTATGAAGCCTAGGGTTTCTGAAATGCAAGCACAGACTTATCAAGGTATTTACTTTGTCACAGCAGAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR GCA 72 bp | AGGGCAGGAAAAAGCCCAAGCAAGCTCTCTATTCCATaGCTATTTGTCAGTGTTCTTATTTTATTACTACTT | + |
|
Preference number: 3 (lower is better) Translates to: RAGKSPSKLSIP*LFVSVLILLLL Trigger: AAGTAGTAATAAAATAAGAACACTGACAAATAGGCATGGAATAGAGAGCTTGCTTGGGCTTTTTCCTGCCCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR-3UTR CAA 90 bp | CCAAGCAAGCTCTCTATTCCATGCCTATTTGTCAGTGTTCTTATTTTATTACTAGCTTGCCATTTTGTGTaGAGCATCTTCTACAGTCTA | + |
|
Preference number: 3 (lower is better) Translates to: PSKLSIPCLFVSVLILLLACHFV*SIFYSL Trigger: TAGACTGTAGAAGATGCTCAACACAAAATGGCAAGC...TAGTAATAAAATAAGAACACTGACAAATAGGCATGGAATAGAGAGCTTGCTTGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR TCA 72 bp | CTTGGACTCTATGGGATTAGATATATAAGGTTTTGTTaGGGATTAGAAATTAAACTGATCCCTGCAGAAGGG | + |
|
Preference number: 3 (lower is better) Translates to: LGLYGIRYIRFC*GLEIKLIPAEG Trigger: CCCTTCTGCAGGGATCAGTTTAATTTCTAATCCTCAACAAAACCTTATATATCTAATCCCATAGAGTCCAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR CAA 72 bp | TCAGCCAGGGCCGGCTCGGTGCCCTCGGCAGCGCGCTaGGCCAGGCAGCCCGTCGTCGCACAGGGGCGCCGT | + |
|
Preference number: 4 (lower is better) Translates to: SARAGSVPSAAR*ARQPVVAQGRR Trigger: ACGGCGCCCCTGTGCGACGACGGGCTGCCTGGCCAAGCGCGCTGCCGAGGGCACCGAGCCGGCCCTGGCTGA 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151016.2 |
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| CDS-3UTR GCA 90 bp | CCGGCTCGGTGCCCTCGGCAGCGCGCTTGGCCAGGCAGCCCGTCGTCGCACAGGCCCCCGAGTCCAGCATaGGCAGGCACTCGGCCCCCA | + |
|
Preference number: 4 (lower is better) Translates to: PARCPRQRAWPGSPSSHRPPSPA*AGTRPP Trigger: TGGGGGCCGAGTGCCTGCGCATGCTGGACTCGGGGG...CCTGTGCGACGACGGGCTGCCTGGCCAAGCGCGCTGCCGAGGGCACCGAGCCGG 76% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000151016.2 |
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| CDS-3UTR GCA 90 bp | AGAATAGGGTACTCTGTTCTATTGGTGTCCAACCCAGTGGCACTTCCAAGAGAACCCCCGAGTCCAGCATaGGCAGGCACTCGGCCCCCA | + |
|
Preference number: 4 (lower is better) Translates to: RIGYSVLLVSNPVALPREPPSPA*AGTRPP Trigger: TGGGGGCCGAGTGCCTGCGCATGCTGGACTCGGGGG...TTCTCTTGGAAGTGCCACTGGGTTGGACACCAATAGAACAGAGTACCCTATTCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| CDS-3UTR GCA 90 bp | TTCCAAGAGAAACTGTATGGTTCCTTTCTGCCTCTGGCTATTTCATTCCCCTCACCCCCGAGTCCAGCATaGGCAGGCACTCGGCCCCCA | + |
|
Preference number: 4 (lower is better) Translates to: FQEKLYGSFLPLAISFPSPPSPA*AGTRPP Trigger: TGGGGGCCGAGTGCCTGCGCATGCTGGACTCGGGGG...TGAGGGGAATGAAATAGCCAGAGGCAGAAAGGAACCATACAGTTTCTCTTGGAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR CAA 72 bp | CTGCCTCTGGCTATTTCATTCCCCTCAGAAGGGTGGTaGAGTGAGACCCAGGGGCAGGAAGGAATGACAGAG | + |
|
Preference number: 4 (lower is better) Translates to: LPLAISFPSEGW*SETQGQEGMTE Trigger: CTCTGTCATTCCTTCCTGCCCCTGGGTCTCACTCAACCACCCTTCTGAGGGGAATGAAATAGCCAGAGGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| 3UTR CAA 72 bp | TATCTGAGTTCGATCGAGCAAGTCGCGCCTGTCCCGTaGGGCCTCAGTTTCTCTACGAGTTCACCAGAGGAA | + |
|
Preference number: 4 (lower is better) Translates to: YLSSIEQVAPVP*GLSFSTSSPEE Trigger: TTCCTCTGGTGAACTCGTAGAGAAACTGAGGCCCAACGGGACAGGCGCGACTTGCTCGATCGAACTCAGATA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151016.2 |
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| CDS-3UTR GCA 90 bp | AAAGCCCAAGCAAGCTCTCTATTCCATGCCTATTTGTCAGTGTTCTTATTTTATCCCCCGAGTCCAGCATaGGCAGGCACTCGGCCCCCA | + |
|
Preference number: 4 (lower is better) Translates to: KAQASSLFHAYLSVFLFYPPSPA*AGTRPP Trigger: TGGGGGCCGAGTGCCTGCGCATGCTGGACTCGGGGG...ATAAAATAAGAACACTGACAAATAGGCATGGAATAGAGAGCTTGCTTGGGCTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| CDS-3UTR TCA 90 bp | TTGGTGTCCAACCCAGTGGCACTTCCAAGAGAAACTGTATGGTTCCTTTCTGCCCTTTCAACCACAGGGTaGCCAAAAGTGATATTGGGA | + |
|
Preference number: 4 (lower is better) Translates to: LVSNPVALPRETVWFLSALSTTG*PKVILG Trigger: TCCCAATATCACTTTTGGTCACCCTGTGGTTGAAAG...GGCAGAAAGGAACCATACAGTTTCTCTTGGAAGTGCCACTGGGTTGGACACCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| CDS-3UTR TCA 90 bp | TGTCCAACCCAGTGGCACTTCCAAGAGAAACTGTATGGTTCCTTTCTGCCTCTGCTTTCAACCACAGGGTaGCCAAAAGTGATATTGGGA | + |
|
Preference number: 4 (lower is better) Translates to: CPTQWHFQEKLYGSFLPLLSTTG*PKVILG Trigger: TCCCAATATCACTTTTGGTCACCCTGTGGTTGAAAG...CAGAGGCAGAAAGGAACCATACAGTTTCTCTTGGAAGTGCCACTGGGTTGGACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| CDS-3UTR TCA 90 bp | TTCCAAGAGAAACTGTATGGTTCCTTTCTGCCTCTGGCTATTTCATTCCCCTCATGGGTCCTCAACCAGTaGACCTTGGGCATCATGTCT | + |
|
Preference number: 4 (lower is better) Translates to: FQEKLYGSFLPLAISFPSWVLNQ*TLGIMS Trigger: AGACATGATGCCCAAGGTTCACTGGTTGAGGACCCA...TGAGGGGAATGAAATAGCCAGAGGCAGAAAGGAACCATACAGTTTCTCTTGGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 |
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| CDS-3UTR CCA 90 bp | AGAATAGGGTACTCTGTTCTATTGGTGTCCAACCCAGTGGCACTTCCAAGAGAAGAAAGGTATATTGATTaGCACCTGCCACAGCCATTG | + |
|
Preference number: 4 (lower is better) Translates to: RIGYSVLLVSNPVALPREERYID*HLPQPL Trigger: CAATGGCTGTGGCAGGTGCCAATCAATATACCTTTC...TTCTCTTGGAAGTGCCACTGGGTTGGACACCAATAGAACAGAGTACCCTATTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 |
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| CDS-3UTR TCA 90 bp | TTCCAAGAGAAACTGTATGGTTCCTTTCTGCCTCTGGCTATTTCATTCCCCTCACTTTCAACCACAGGGTaGCCAAAAGTGATATTGGGA | + |
|
Preference number: 4 (lower is better) Translates to: FQEKLYGSFLPLAISFPSLSTTG*PKVILG Trigger: TCCCAATATCACTTTTGGTCACCCTGTGGTTGAAAG...TGAGGGGAATGAAATAGCCAGAGGCAGAAAGGAACCATACAGTTTCTCTTGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 ENSMUST00000142920.8 |
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| CDS-3UTR TCA 90 bp | AGAGTAGTCTGCTGTGACAAAGTAAATACCTTGATAAGTCTGTGCTTGCATTTCTGGGTCCTCAACCAGTaGACCTTGGGCATCATGTCT | + |
|
Preference number: 4 (lower is better) Translates to: RVVCCDKVNTLISLCLHFWVLNQ*TLGIMS Trigger: AGACATGATGCCCAAGGTTCACTGGTTGAGGACCCA...GAAATGCAAGCACAGACTTATCAAGGTATTTACTTTGTCACAGCAGACTACTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 |
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| CDS-3UTR CCA 90 bp | TTCTATTGGTGTCCAACCCAGTGGCACTTCCAAGAGAAACTGTATGGTTCCTTTGAAAGGTATATTGATTaGCACCTGCCACAGCCATTG | + |
|
Preference number: 4 (lower is better) Translates to: FYWCPTQWHFQEKLYGSFERYID*HLPQPL Trigger: CAATGGCTGTGGCAGGTGCCAATCAATATACCTTTC...AAAGGAACCATACAGTTTCTCTTGGAAGTGCCACTGGGTTGGACACCAATAGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 |
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| CDS-3UTR GCA 90 bp | TTCCAAGAGAAACTGTATGGTTCCTTTCTGCCTCTGGCTATTTCATTCCCCTCAATATTGATTGGCACCTaGCACAGCCATTGGTTTTAC | + |
|
Preference number: 4 (lower is better) Translates to: FQEKLYGSFLPLAISFPSILIGT*HSHWFY Trigger: GTAAAACCAATGGCTGTGGCAGGTGCCAATCAATAT...TGAGGGGAATGAAATAGCCAGAGGCAGAAAGGAACCATACAGTTTCTCTTGGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 |
||
| CDS-3UTR CAA 90 bp | GTCTCATTCCATTCATATTCTCAGGCATATAAGCAAATCACAAATGACATGAACACGTTTCTTAGTAAGTaGATAACAGCTCTGGGGTCA | + |
|
Preference number: 5 (lower is better) Translates to: VSFHSYSQAYKQITNDMNTFLSK*ITALGS Trigger: TGACCCCAGAGCTGTTATCAACTTACTAAGAAACGT...GTTCATGTCATTTGTGATTTGCTTATATGCCTGAGAATATGAATGGAATGAGAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027157.10 ENSMUST00000113995.2 |
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