Pregenerated sensors for RPAIN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000018449Ensembl transcript IDs: ENSMUST00000018593.10, ENSMUST00000154430.2, ENSMUST00000167509.2, ENSMUST00000169965.8, ENSMUST00000171254.8, ENSMUST00000178822.8
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCATTACTTCTTGCACAAGAAGTCTGTCTGAGGCTGTCCCCGGCGTaGTACCTGCAGCCTGGCGATATTTGTTCAGGAGCCTGTGCCTGC | + |
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Preference number: 1 (lower is better) Translates to: PLLLAQEVCLRLSPA*YLQPGDICSGACAC Trigger: GCAGGCACAGGCTCCTGAACAAATATCGCCAGGCTGCAGGTAGCACGCCGGGGACAGCCTCAGACAGACTTCTTGTGCAAGAAGTAATGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154430.2 |
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| 3UTR CCA 90 bp | ACAAGAAGTCTGTCTGAGGCTGTCCCCGGCGTGCTACCTGCAGCCTaGCGATATTTGTTCAGGAGCCTGTGCCTGCTGTTTCTCATTCTC | + |
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Preference number: 1 (lower is better) Translates to: TRSLSEAVPGVLPAA*RYLFRSLCLLFLIL Trigger: GAGAATGAGAAACAGCAGGCACAGGCTCCTGAACAAATATCGCCAGGCTGCAGGTAGCACGCCGGGGACAGCCTCAGACAGACTTCTTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154430.2 |
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| 3UTR TCA 90 bp | ATTTTCTTCCAAACAGGCTCGAAGCTTCTGCTCTGTCAGGTCTGTTaGGTGAACAGGGATGTGCAGGCCACATGGACACGTGACCACACT | + |
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Preference number: 1 (lower is better) Translates to: IFFQTGSKLLLCQVC*VNRDVQATWTRDHT Trigger: AGTGTGGTCACGTGTCCATGTGGCCTGCACATCCCTGTTCACTCAACAGACCTGACAGAGCAGAAGCTTCGAGCCTGTTTGGAAGAAAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171254.8 |
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| 3UTR GCA 90 bp | GCGTGCTACCTGCAGCCTGGCGATATTTGTTCAGGAGCCTGTGCCTaGTGTTTCTCATTCTCTCCAGACATCCTGTTGAGAAACACTACT | + |
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Preference number: 1 (lower is better) Translates to: ACYLQPGDICSGACA*CFSFSPDILLRNTT Trigger: AGTAGTGTTTCTCAACAGGATGTCTGGAGAGAATGAGAAACAGCAGGCACAGGCTCCTGAACAAATATCGCCAGGCTGCAGGTAGCACGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154430.2 |
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| 3UTR CCA 90 bp | CACTACTCCACACAACATGTTCAGCATGAAGATTGTTTTTCTGGGTaGTTCTTCTGGAATACACCCACCCTTTTGAGACTGCTGAACAGG | + |
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Preference number: 1 (lower is better) Translates to: HYSTQHVQHEDCFSG*FFWNTPTLLRLLNR Trigger: CCTGTTCAGCAGTCTCAAAAGGGTGGGTGTATTCCAGAAGAACCACCCAGAAAAACAATCTTCATGCTGAACATGTTGTGTGGAGTAGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154430.2 |
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| 3UTR-3UTR CCA 90 bp | AGGATCACAGCCCAGGTGTCACAAGTCAGGCAGTTCATCAGAAGACTGGGCTTCGATGTGCAGGCCACATaGACACGTGACCACACTGTT | + |
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Preference number: 2 (lower is better) Translates to: RITAQVSQVRQFIRRLGFDVQAT*TRDHTV Trigger: AACAGTGTGGTCACGTGTCCATGTGGCCTGCACATC...GAAGCCCAGTCTTCTGATGAACTGCCTGACTTGTGACACCTGGGCTGTGATCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171254.8 |
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| 3UTR-3UTR GCA 90 bp | ACAGCCCAGGTGTCACAAGTCAGGCAGTTCATCAGAAGACTGGGCTTCTCTTCTGGACAGTGTACACTGTaGTCATTCACATTTTCTTCC | + |
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Preference number: 2 (lower is better) Translates to: TAQVSQVRQFIRRLGFSSGQCTL*SFTFSS Trigger: GGAAGAAAATGTGAATGAGCACAGTGTACACTGTCC...AGAAGAGAAGCCCAGTCTTCTGATGAACTGCCTGACTTGTGACACCTGGGCTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171254.8 |
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| 3UTR CAA 90 bp | GAAGATTGTTTTTCTGGGTGGTTCTTCTGGAATACACCCACCCTTTaGAGACTGCTGAACAGGGAGATAAGCTGCTTCTTAGAAGGAACT | + |
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Preference number: 2 (lower is better) Translates to: EDCFSGWFFWNTPTL*RLLNREISCFLEGT Trigger: AGTTCCTTCTAAGAAGCAGCTTATCTCCCTGTTCAGCAGTCTCAAAAGGGTGGGTGTATTCCAGAAGAACCACCCAGAAAAACAATCTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154430.2 |
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| 3UTR-3UTR CCA 90 bp | TTCTCATTCTCTCCAGACATCCTGTTGAGAAACACTACTCCACACAACATGTTCTCTGGGTGGTTCTTCTaGAATACACCCACCCTTTTG | + |
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Preference number: 2 (lower is better) Translates to: FSFSPDILLRNTTPHNMFSGWFF*NTPTLL Trigger: CAAAAGGGTGGGTGTATTCCAGAAGAACCACCCAGA...GAACATGTTGTGTGGAGTAGTGTTTCTCAACAGGATGTCTGGAGAGAATGAGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154430.2 |
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| 3UTR TCA 72 bp | CAGGCTCGAAGCTTCTGCTCTGTCAGGTCTGTTGAGTaGACAGGGATGTGCAGGCCACATGGACACGTGACC | + |
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Preference number: 3 (lower is better) Translates to: QARSFCSVRSVE*TGMCRPHGHVT Trigger: GGTCACGTGTCCATGTGGCCTGCACATCCCTGTTCACTCAACAGACCTGACAGAGCAGAAGCTTCGAGCCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171254.8 |
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| 3UTR TCA 72 bp | CAAACAGGCTCGAAGCTTCTGCTCTGTCAGGTCTGTTaGGTGAACAGGGATGTGCAGGCCACATGGACACGT | + |
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Preference number: 3 (lower is better) Translates to: QTGSKLLLCQVC*VNRDVQATWTR Trigger: ACGTGTCCATGTGGCCTGCACATCCCTGTTCACTCAACAGACCTGACAGAGCAGAAGCTTCGAGCCTGTTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171254.8 |
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| 3UTR GCA 72 bp | GACTGCAAAGAAGCCCACTCTTCCTCCATTACTTCTTaGACAAGAAGTCTGTCTGAGGCTGTCCCCGGCGTG | + |
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Preference number: 3 (lower is better) Translates to: DCKEAHSSSITS*TRSLSEAVPGV Trigger: CACGCCGGGGACAGCCTCAGACAGACTTCTTGTGCAAGAAGTAATGGAGGAAGAGTGGGCTTCTTTGCAGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154430.2 |
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| 3UTR-3UTR CAA 90 bp | AGGATCACAGCCCAGGTGTCACAAGTCAGGCAGTTCATCAGAAGACTGGGCTTCGCTCTGTCAGGTCTGTaGAGTGAACAGGGATGTGCA | + |
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Preference number: 3 (lower is better) Translates to: RITAQVSQVRQFIRRLGFALSGL*SEQGCA Trigger: TGCACATCCCTGTTCACTCAACAGACCTGACAGAGC...GAAGCCCAGTCTTCTGATGAACTGCCTGACTTGTGACACCTGGGCTGTGATCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171254.8 |
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| 3UTR CCA 72 bp | GTTCAGCATGAAGATTGTTTTTCTGGGTGGTTCTTCTaGAATACACCCACCCTTTTGAGACTGCTGAACAGG | + |
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Preference number: 3 (lower is better) Translates to: VQHEDCFSGWFF*NTPTLLRLLNR Trigger: CCTGTTCAGCAGTCTCAAAAGGGTGGGTGTATTCCAGAAGAACCACCCAGAAAAACAATCTTCATGCTGAAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154430.2 |
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| 3UTR CCA 72 bp | ACACAACATGTTCAGCATGAAGATTGTTTTTCTGGGTaGTTCTTCTGGAATACACCCACCCTTTTGAGACTG | + |
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Preference number: 3 (lower is better) Translates to: TQHVQHEDCFSG*FFWNTPTLLRL Trigger: CAGTCTCAAAAGGGTGGGTGTATTCCAGAAGAACCACCCAGAAAAACAATCTTCATGCTGAACATGTTGTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154430.2 |
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| 3UTR CAA 72 bp | GCTGTCCCCGGCGTGCTACCTGCAGCCTGGCGATATTaGTTCAGGAGCCTGTGCCTGCTGTTTCTCATTCTC | + |
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Preference number: 4 (lower is better) Translates to: AVPGVLPAAWRY*FRSLCLLFLIL Trigger: GAGAATGAGAAACAGCAGGCACAGGCTCCTGAACAAATATCGCCAGGCTGCAGGTAGCACGCCGGGGACAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154430.2 |
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| 3UTR CAA 72 bp | CCAAACAGGCTCGAAGCTTCTGCTCTGTCAGGTCTGTaGAGTGAACAGGGATGTGCAGGCCACATGGACACG | + |
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Preference number: 4 (lower is better) Translates to: PNRLEASALSGL*SEQGCAGHMDT Trigger: CGTGTCCATGTGGCCTGCACATCCCTGTTCACTCAACAGACCTGACAGAGCAGAAGCTTCGAGCCTGTTTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171254.8 |
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| CDS-3UTR TCA 90 bp | CACAGCCCAGGTGTCACAAGTCAGGCAGTTCATCAGAAGACTGGGCTTCTCTTCAGTGGCAATTCCAACTaGAGCAAGGCCTCCGGACAA | + |
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Preference number: 4 (lower is better) Translates to: HSPGVTSQAVHQKTGLLFSGNSN*SKASGQ Trigger: TTGTCCGGAGGCCTTGCTTCAGTTGGAATTGCCACT...GAAGAGAAGCCCAGTCTTCTGATGAACTGCCTGACTTGTGACACCTGGGCTGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171254.8 |
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| CDS-3UTR GCA 90 bp | CACAGCCCAGGTGTCACAAGTCAGGCAGTTCATCAGAAGACTGGGCTTCTCTTCTCAGGAGCCTGTGCCTaGTGTTTCTCATTCTCTCCA | + |
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Preference number: 4 (lower is better) Translates to: HSPGVTSQAVHQKTGLLFSGACA*CFSFSP Trigger: TGGAGAGAATGAGAAACAGCAGGCACAGGCTCCTGA...GAAGAGAAGCCCAGTCTTCTGATGAACTGCCTGACTTGTGACACCTGGGCTGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171254.8 |
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| CDS-3UTR GCA 90 bp | CACAGCCCAGGTGTCACAAGTCAGGCAGTTCATCAGAAGACTGGGCTTCTCTTCCTCTCCAGACATCCCTaGCTGAAAGTTTCTTTCCAG | + |
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Preference number: 4 (lower is better) Translates to: HSPGVTSQAVHQKTGLLFLSRHP*LKVSFQ Trigger: CTGGAAAGAAACTTTCAGGCAGGGATGTCTGGAGAG...GAAGAGAAGCCCAGTCTTCTGATGAACTGCCTGACTTGTGACACCTGGGCTGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171254.8 |
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| CDS-3UTR TCA 90 bp | CTTCTGGAATACACCCACCCTTTTGAGACTGCTGAACAGGGAGATAAGCTGCTTGTGCTTCCCTCTGCCTaGAAGTTTCTTTCCAGTGGG | + |
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Preference number: 4 (lower is better) Translates to: LLEYTHPFETAEQGDKLLVLPSA*KFLSSG Trigger: CCCACTGGAAAGAAACTTTCAGGCAGAGGGAAGCAC...AAGCAGCTTATCTCCCTGTTCAGCAGTCTCAAAAGGGTGGGTGTATTCCAGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154430.2 |
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| CDS-3UTR GCA 90 bp | CATTTTCTTCCAAACAGGCTCGAAGCTTCTGCTCTGTCAGGTCTGTTGAGTGAATCCTGCTCGATGTCCTaGAGCACAGCTAGGTCCAGT | + |
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Preference number: 4 (lower is better) Translates to: HFLPNRLEASALSGLLSESCSMS*STARSS Trigger: ACTGGACCTAGCTGTGCTGCAGGACATCGAGCAGGA...TTCACTCAACAGACCTGACAGAGCAGAAGCTTCGAGCCTGTTTGGAAGAAAATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171254.8 |
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| CDS-3UTR CCA 90 bp | CACTGTGCTCATTCACATTTTCTTCCAAACAGGCTCGAAGCTTCTGCTCTGTCAAAAGTTTCTTTCCAGTaGGGCGAGCCCACCTGCTTG | + |
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Preference number: 4 (lower is better) Translates to: HCAHSHFLPNRLEASALSKVSFQ*GEPTCL Trigger: CAAGCAGGTGGGCTCGCCCCACTGGAAAGAAACTTT...TGACAGAGCAGAAGCTTCGAGCCTGTTTGGAAGAAAATGTGAATGAGCACAGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171254.8 |
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| CDS-3UTR GCA 90 bp | AAAATCCGTTATATACAAAAGGCTTGTGCATACAGGGCCCTCTCAGGAAATGAGTCCTGCTCGATGTCCTaGAGCACAGCTAGGTCCAGT | + |
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Preference number: 4 (lower is better) Translates to: KIRYIQKACAYRALSGNESCSMS*STARSS Trigger: ACTGGACCTAGCTGTGCTGCAGGACATCGAGCAGGA...CTCATTTCCTGAGAGGGCCCTGTATGCACAAGCCTTTTGTATATAACGGATTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018593.10 |
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| CDS-3UTR CCA 90 bp | ATCCGTTATATACAAAAGGCTTGTGCATACAGGGCCCTCTCAGGAAATGAGTTGGATGTGCAGGCCACATaGACACGTGACCACACTGTT | + |
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Preference number: 4 (lower is better) Translates to: IRYIQKACAYRALSGNELDVQAT*TRDHTV Trigger: AACAGTGTGGTCACGTGTCCATGTGGCCTGCACATC...CAACTCATTTCCTGAGAGGGCCCTGTATGCACAAGCCTTTTGTATATAACGGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018593.10 |
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| CDS-3UTR TCA 90 bp | GTTATATACAAAAGGCTTGTGCATACAGGGCCCTCTCAGGAAATGAGTTGTTCTAGTGGCAATTCCAACTaGAGCAAGGCCTCCGGACAA | + |
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Preference number: 4 (lower is better) Translates to: VIYKRLVHTGPSQEMSCSSGNSN*SKASGQ Trigger: TTGTCCGGAGGCCTTGCTTCAGTTGGAATTGCCACT...AGAACAACTCATTTCCTGAGAGGGCCCTGTATGCACAAGCCTTTTGTATATAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018593.10 |
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| CDS-3UTR TCA 90 bp | GTTATATACAAAAGGCTTGTGCATACAGGGCCCTCTCAGGAAATGAGTTGTTCTCTCTGTCAGGTCTGTTaGGTGAACAGGGATGTGCAG | + |
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Preference number: 4 (lower is better) Translates to: VIYKRLVHTGPSQEMSCSLCQVC*VNRDVQ Trigger: CTGCACATCCCTGTTCACTCAACAGACCTGACAGAG...AGAACAACTCATTTCCTGAGAGGGCCCTGTATGCACAAGCCTTTTGTATATAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018593.10 |
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| CDS-3UTR GCA 90 bp | GGGACAGTGTACACTGTGCTCATTCACATTTTCTTCCAAACAGGCTCGAAGCTTCAATTCTCCACAGACTaGAAAGAAGCCCACTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: GTVYTVLIHIFFQTGSKLQFSTD*KEAHSS Trigger: GGAAGAGTGGGCTTCTTTGCAGTCTGTGGAGAATTG...AAGCTTCGAGCCTGTTTGGAAGAAAATGTGAATGAGCACAGTGTACACTGTCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171254.8 |
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| CDS-3UTR GCA 90 bp | ATCCGTTATATACAAAAGGCTTGTGCATACAGGGCCCTCTCAGGAAATGAGTTGTCATTACACAGCTCCTaGTCGATGTCCTGCAGCACA | + |
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Preference number: 4 (lower is better) Translates to: IRYIQKACAYRALSGNELSLHSS*SMSCST Trigger: TGTGCTGCAGGACATCGAGCAGGAGCTGTGTAATGA...CAACTCATTTCCTGAGAGGGCCCTGTATGCACAAGCCTTTTGTATATAACGGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018593.10 |
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| CDS-3UTR GCA 90 bp | ACAGTGTACACTGTGCTCATTCACATTTTCTTCCAAACAGGCTCGAAGCTTCTGTCATTACACAGCTCCTaGTCGATGTCCTGCAGCACA | + |
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Preference number: 4 (lower is better) Translates to: TVYTVLIHIFFQTGSKLLSLHSS*SMSCST Trigger: TGTGCTGCAGGACATCGAGCAGGAGCTGTGTAATGA...CAGAAGCTTCGAGCCTGTTTGGAAGAAAATGTGAATGAGCACAGTGTACACTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171254.8 |
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| CDS-3UTR CCA 90 bp | GTTATATACAAAAGGCTTGTGCATACAGGGCCCTCTCAGGAAATGAGTTGTTCTAAAGTTTCTTTCCAGTaGGGCGAGCCCACCTGCTTG | + |
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Preference number: 4 (lower is better) Translates to: VIYKRLVHTGPSQEMSCSKVSFQ*GEPTCL Trigger: CAAGCAGGTGGGCTCGCCCCACTGGAAAGAAACTTT...AGAACAACTCATTTCCTGAGAGGGCCCTGTATGCACAAGCCTTTTGTATATAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018593.10 |
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| CDS-3UTR TCA 90 bp | GTTATATACAAAAGGCTTGTGCATACAGGGCCCTCTCAGGAAATGAGTTGTTCTTACACACAGGACAGATaGGGGAGTTTGCTTCCCACT | + |
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Preference number: 4 (lower is better) Translates to: VIYKRLVHTGPSQEMSCSYTQDR*GSLLPT Trigger: AGTGGGAAGCAAACTCCCTCATCTGTCCTGTGTGTA...AGAACAACTCATTTCCTGAGAGGGCCCTGTATGCACAAGCCTTTTGTATATAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018593.10 |
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| CDS-3UTR GCA 90 bp | ATCCGTTATATACAAAAGGCTTGTGCATACAGGGCCCTCTCAGGAAATGAGTTGCTCTCCAGACATCCCTaGCTGAAAGTTTCTTTCCAG | + |
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Preference number: 4 (lower is better) Translates to: IRYIQKACAYRALSGNELLSRHP*LKVSFQ Trigger: CTGGAAAGAAACTTTCAGGCAGGGATGTCTGGAGAG...CAACTCATTTCCTGAGAGGGCCCTGTATGCACAAGCCTTTTGTATATAACGGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018593.10 |
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| CDS-3UTR GCA 90 bp | AAAATCCGTTATATACAAAAGGCTTGTGCATACAGGGCCCTCTCAGGAAATGAGTCAGGAGCCTGTGCCTaGTGTTTCTCATTCTCTCCA | + |
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Preference number: 4 (lower is better) Translates to: KIRYIQKACAYRALSGNESGACA*CFSFSP Trigger: TGGAGAGAATGAGAAACAGCAGGCACAGGCTCCTGA...CTCATTTCCTGAGAGGGCCCTGTATGCACAAGCCTTTTGTATATAACGGATTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018593.10 |
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| CDS-3UTR GCA 90 bp | ATCCGTTATATACAAAAGGCTTGTGCATACAGGGCCCTCTCAGGAAATGAGTTGACAGATGAGGGAGTTTaGTTCCCACTCAGCCAACAT | + |
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Preference number: 4 (lower is better) Translates to: IRYIQKACAYRALSGNELTDEGV*FPLSQH Trigger: ATGTTGGCTGAGTGGGAAGCAAACTCCCTCATCTGT...CAACTCATTTCCTGAGAGGGCCCTGTATGCACAAGCCTTTTGTATATAACGGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018593.10 |
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| CDS-3UTR CCA 90 bp | AAACACTACTCCACACAACATGTTCAGCATGAAGATTGTTTTTCTGGGTGGTTCAAAGTTTCTTTCCAGTaGGGCGAGCCCACCTGCTTG | + |
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Preference number: 4 (lower is better) Translates to: KHYSTQHVQHEDCFSGWFKVSFQ*GEPTCL Trigger: CAAGCAGGTGGGCTCGCCCCACTGGAAAGAAACTTT...GAACCACCCAGAAAAACAATCTTCATGCTGAACATGTTGTGTGGAGTAGTGTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154430.2 |
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| 3UTR CAA 72 bp | TTTTCTGGGTGGTTCTTCTGGAATACACCCACCCTTTaGAGACTGCTGAACAGGGAGATAAGCTGCTTCTTA | + |
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Preference number: 4 (lower is better) Translates to: FSGWFFWNTPTL*RLLNREISCFL Trigger: TAAGAAGCAGCTTATCTCCCTGTTCAGCAGTCTCAAAAGGGTGGGTGTATTCCAGAAGAACCACCCAGAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154430.2 |
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| CDS-3UTR GCA 90 bp | GTTATATACAAAAGGCTTGTGCATACAGGGCCCTCTCAGGAAATGAGTTGTTCTTTGTTCAGGAGCCTGTaGCTGCTGTTTCTCATTCTC | + |
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Preference number: 4 (lower is better) Translates to: VIYKRLVHTGPSQEMSCSLFRSL*LLFLIL Trigger: GAGAATGAGAAACAGCAGGCACAGGCTCCTGAACAA...AGAACAACTCATTTCCTGAGAGGGCCCTGTATGCACAAGCCTTTTGTATATAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018593.10 |
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| CDS-3UTR GCA 90 bp | CACTGTGCTCATTCACATTTTCTTCCAAACAGGCTCGAAGCTTCTGCTCTGTCATCCTCCATTACTTCTTaGACAAGAAGTCTGTCTGAG | + |
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Preference number: 4 (lower is better) Translates to: HCAHSHFLPNRLEASALSSSITS*TRSLSE Trigger: CTCAGACAGACTTCTTGTGCAAGAAGTAATGGAGGA...TGACAGAGCAGAAGCTTCGAGCCTGTTTGGAAGAAAATGTGAATGAGCACAGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171254.8 |
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| CDS-3UTR GCA 90 bp | GTTATATACAAAAGGCTTGTGCATACAGGGCCCTCTCAGGAAATGAGTTGTTCTCAATTCTCCACAGACTaGAAAGAAGCCCACTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: VIYKRLVHTGPSQEMSCSQFSTD*KEAHSS Trigger: GGAAGAGTGGGCTTCTTTGCAGTCTGTGGAGAATTG...AGAACAACTCATTTCCTGAGAGGGCCCTGTATGCACAAGCCTTTTGTATATAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018593.10 |
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| CDS-3UTR GCA 90 bp | ATCCGTTATATACAAAAGGCTTGTGCATACAGGGCCCTCTCAGGAAATGAGTTGTCCTCCATTACTTCTTaGACAAGAAGTCTGTCTGAG | + |
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Preference number: 4 (lower is better) Translates to: IRYIQKACAYRALSGNELSSITS*TRSLSE Trigger: CTCAGACAGACTTCTTGTGCAAGAAGTAATGGAGGA...CAACTCATTTCCTGAGAGGGCCCTGTATGCACAAGCCTTTTGTATATAACGGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018593.10 |
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| CDS-3UTR CCA 90 bp | GTTATATACAAAAGGCTTGTGCATACAGGGCCCTCTCAGGAAATGAGTTGTTCTAGTTCATCAGAAGACTaGGCTTCTCTTCTGTTCCAC | + |
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Preference number: 4 (lower is better) Translates to: VIYKRLVHTGPSQEMSCSSSSED*ASLLFH Trigger: GTGGAACAGAAGAGAAGCCCAGTCTTCTGATGAACT...AGAACAACTCATTTCCTGAGAGGGCCCTGTATGCACAAGCCTTTTGTATATAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018593.10 |
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| CDS-3UTR TCA 90 bp | AAAATCCGTTATATACAAAAGGCTTGTGCATACAGGGCCCTCTCAGGAAATGAGCAGCCAACATTCTCCTaGGACAACTTTCATCAAACT | + |
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Preference number: 4 (lower is better) Translates to: KIRYIQKACAYRALSGNEQPTFS*DNFHQT Trigger: AGTTTGATGAAAGTTGTCTCAGGAGAATGTTGGCTG...CTCATTTCCTGAGAGGGCCCTGTATGCACAAGCCTTTTGTATATAACGGATTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018593.10 |
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| CDS-3UTR GCA 90 bp | GTTATATACAAAAGGCTTGTGCATACAGGGCCCTCTCAGGAAATGAGTTGTTCTGGACAGTGTACACTGTaGTCATTCACATTTTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: VIYKRLVHTGPSQEMSCSGQCTL*SFTFSS Trigger: GGAAGAAAATGTGAATGAGCACAGTGTACACTGTCC...AGAACAACTCATTTCCTGAGAGGGCCCTGTATGCACAAGCCTTTTGTATATAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018593.10 |
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| CDS-3UTR TCA 90 bp | GTTATATACAAAAGGCTTGTGCATACAGGGCCCTCTCAGGAAATGAGTTGTTCTCTTCATACTCGCTTATaGTGGACTTTTCTTCATTAC | + |
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Preference number: 4 (lower is better) Translates to: VIYKRLVHTGPSQEMSCSLHTRL*WTFLHY Trigger: GTAATGAAGAAAAGTCCATCATAAGCGAGTATGAAG...AGAACAACTCATTTCCTGAGAGGGCCCTGTATGCACAAGCCTTTTGTATATAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018593.10 |
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| CDS TCA 90 bp | CTTCTATCTCACGTGACGTATACATACGGAGTGCTTCCCTCTGCCTaGAAGTTTCTTTCCAGTGGGGCGAGCCCACCTGCTTGTACAACA | + |
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Preference number: 5 (lower is better) Translates to: LLSHVTYTYGVLPSA*KFLSSGASPPACTT Trigger: TGTTGTACAAGCAGGTGGGCTCGCCCCACTGGAAAGAAACTTTCAGGCAGAGGGAAGCACTCCGTATGTATACGTCACGTGAGATAGAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154430.2 |
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| CDS TCA 90 bp | GTTCCACCGGTGAGTGAACAGGGATGTGCAGGCCACATGGACACGTaGCCACACTGTTCATTATTCTCAGGTTGTACTTTATACACACAG | + |
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Preference number: 5 (lower is better) Translates to: VPPVSEQGCAGHMDT*PHCSLFSGCTLYTQ Trigger: CTGTGTGTATAAAGTACAACCTGAGAATAATGAACAGTGTGGTCACGTGTCCATGTGGCCTGCACATCCCTGTTCACTCACCGGTGGAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178822.8 |
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| CDS CCA 90 bp | CACAGCCCAGGTGTCACAAGTGTGAACAGGGATGTGCAGGCCACATaGACACGTGACCACACTGTTCATTATTCTCAGGTTGTACTTTAT | + |
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Preference number: 5 (lower is better) Translates to: HSPGVTSVNRDVQAT*TRDHTVHYSQVVLY Trigger: ATAAAGTACAACCTGAGAATAATGAACAGTGTGGTCACGTGTCCATGTGGCCTGCACATCCCTGTTCACACTTGTGACACCTGGGCTGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167509.2 |
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| CDS GCA 90 bp | TCTTCATACTCGCTTATGATGGACTTTTCTTCATTACACAGCTCCTaGTCGATGTCCTGCAGCACAGCTAGGTCCAGTGGCAATTCCAAC | + |
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Preference number: 5 (lower is better) Translates to: SSYSLMMDFSSLHSS*SMSCSTARSSGNSN Trigger: GTTGGAATTGCCACTGGACCTAGCTGTGCTGCAGGACATCGAGCAGGAGCTGTGTAATGAAGAAAAGTCCATCATAAGCGAGTATGAAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018593.10 ENSMUST00000167509.2 ENSMUST00000178822.8 |
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| CDS-3UTR CAA 90 bp | ATCCGTTATATACAAAAGGCTTGTGCATACAGGGCCCTCTCAGGAAATGAGTTGGCTCTGTCAGGTCTGTaGAGTGAACAGGGATGTGCA | + |
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Preference number: 5 (lower is better) Translates to: IRYIQKACAYRALSGNELALSGL*SEQGCA Trigger: TGCACATCCCTGTTCACTCAACAGACCTGACAGAGC...CAACTCATTTCCTGAGAGGGCCCTGTATGCACAAGCCTTTTGTATATAACGGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018593.10 |
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| CDS TCA 90 bp | TCAGGTCTGTTGAGTGAACAGGGATGTGCAGGCCACATGGACACGTaGCCACACTGTTCATTATTCTCAGGTTGTACTTTATACACACAG | + |
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Preference number: 5 (lower is better) Translates to: SGLLSEQGCAGHMDT*PHCSLFSGCTLYTQ Trigger: CTGTGTGTATAAAGTACAACCTGAGAATAATGAACAGTGTGGTCACGTGTCCATGTGGCCTGCACATCCCTGTTCACTCAACAGACCTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018593.10 |
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| CDS TCA 90 bp | AGGTGTCACAAGTGTGAACAGGGATGTGCAGGCCACATGGACACGTaGCCACACTGTTCATTATTCTCAGGTTGTACTTTATACACACAG | + |
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Preference number: 5 (lower is better) Translates to: RCHKCEQGCAGHMDT*PHCSLFSGCTLYTQ Trigger: CTGTGTGTATAAAGTACAACCTGAGAATAATGAACAGTGTGGTCACGTGTCCATGTGGCCTGCACATCCCTGTTCACACTTGTGACACCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167509.2 |
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| CDS TCA 90 bp | ACCGTGTCTGATGTTCTTCAGGAGAGAAATAACTTCTATCTCACGTaGCGTATACATACGGAGTGCTTCCCTCTGCCTGAAAGTTTCTTT | + |
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Preference number: 5 (lower is better) Translates to: TVSDVLQERNNFYLT*RIHTECFPLPESFF Trigger: AAAGAAACTTTCAGGCAGAGGGAAGCACTCCGTATGTATACGTCACGTGAGATAGAAGTTATTTCTCTCCTGAAGAACATCAGACACGGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154430.2 |
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| CDS GCA 90 bp | TATTCTCAGGTTGTACTTTATACACACAGGACAGATGAGGGAGTTTaGTTCCCACTCAGCCAACATTCTCCTGAGACAACTTTCATCAAA | + |
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Preference number: 5 (lower is better) Translates to: YSQVVLYTHRTDEGV*FPLSQHSPETTFIK Trigger: TTTGATGAAAGTTGTCTCAGGAGAATGTTGGCTGAGTGGGAAGCAAACTCCCTCATCTGTCCTGTGTGTATAAAGTACAACCTGAGAATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018593.10 ENSMUST00000167509.2 ENSMUST00000178822.8 |
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| CDS TCA 72 bp | TCCTGCAGCACAGCTAGGTCCAGTGGCAATTCCAACTaGAGCAAGGCCTCCGGACAATTCTCCACAGACTGC | + |
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Preference number: 6 (lower is better) Translates to: SCSTARSSGNSN*SKASGQFSTDC Trigger: GCAGTCTGTGGAGAATTGTCCGGAGGCCTTGCTTCAGTTGGAATTGCCACTGGACCTAGCTGTGCTGCAGGA 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000018593.10 ENSMUST00000167509.2 ENSMUST00000169965.8 ENSMUST00000171254.8 ENSMUST00000178822.8 |
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| CDS TCA 72 bp | CACGTGACGTATACATACGGAGTGCTTCCCTCTGCCTaGAAGTTTCTTTCCAGTGGGGCGAGCCCACCTGCT | + |
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Preference number: 6 (lower is better) Translates to: HVTYTYGVLPSA*KFLSSGASPPA Trigger: AGCAGGTGGGCTCGCCCCACTGGAAAGAAACTTTCAGGCAGAGGGAAGCACTCCGTATGTATACGTCACGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154430.2 |
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| CDS GCA 72 bp | TCGCTTATGATGGACTTTTCTTCATTACACAGCTCCTaGTCGATGTCCTGCAGCACAGCTAGGTCCAGTGGC | + |
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Preference number: 6 (lower is better) Translates to: SLMMDFSSLHSS*SMSCSTARSSG Trigger: GCCACTGGACCTAGCTGTGCTGCAGGACATCGAGCAGGAGCTGTGTAATGAAGAAAAGTCCATCATAAGCGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018593.10 ENSMUST00000167509.2 ENSMUST00000178822.8 |
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| CDS CAA 90 bp | TGCAGGCCACATGGACACGTGACCACACTGTTCATTATTCTCAGGTaGTACTTTATACACACAGGACAGATGAGGGAGTTTGCTTCCCAC | + |
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Preference number: 6 (lower is better) Translates to: CRPHGHVTTLFIILR*YFIHTGQMREFASH Trigger: GTGGGAAGCAAACTCCCTCATCTGTCCTGTGTGTATAAAGTACAACCTGAGAATAATGAACAGTGTGGTCACGTGTCCATGTGGCCTGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018593.10 ENSMUST00000167509.2 ENSMUST00000178822.8 |
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| CDS TCA 72 bp | GTGAGTGAACAGGGATGTGCAGGCCACATGGACACGTaGCCACACTGTTCATTATTCTCAGGTTGTACTTTA | + |
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Preference number: 6 (lower is better) Translates to: VSEQGCAGHMDT*PHCSLFSGCTL Trigger: TAAAGTACAACCTGAGAATAATGAACAGTGTGGTCACGTGTCCATGTGGCCTGCACATCCCTGTTCACTCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178822.8 |
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| CDS TCA 72 bp | TTGAGTGAACAGGGATGTGCAGGCCACATGGACACGTaGCCACACTGTTCATTATTCTCAGGTTGTACTTTA | + |
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Preference number: 6 (lower is better) Translates to: LSEQGCAGHMDT*PHCSLFSGCTL Trigger: TAAAGTACAACCTGAGAATAATGAACAGTGTGGTCACGTGTCCATGTGGCCTGCACATCCCTGTTCACTCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018593.10 |
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| CDS TCA 72 bp | AAGTGTGAACAGGGATGTGCAGGCCACATGGACACGTaGCCACACTGTTCATTATTCTCAGGTTGTACTTTA | + |
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Preference number: 6 (lower is better) Translates to: KCEQGCAGHMDT*PHCSLFSGCTL Trigger: TAAAGTACAACCTGAGAATAATGAACAGTGTGGTCACGTGTCCATGTGGCCTGCACATCCCTGTTCACACTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167509.2 |
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| CDS TCA 72 bp | TTATTCTCAGGTTGTACTTTATACACACAGGACAGATaGGGGAGTTTGCTTCCCACTCAGCCAACATTCTCC | + |
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Preference number: 6 (lower is better) Translates to: LFSGCTLYTQDR*GSLLPTQPTFS Trigger: GGAGAATGTTGGCTGAGTGGGAAGCAAACTCCCTCATCTGTCCTGTGTGTATAAAGTACAACCTGAGAATAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018593.10 ENSMUST00000167509.2 ENSMUST00000178822.8 |
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| CDS TCA 72 bp | GATGTTCTTCAGGAGAGAAATAACTTCTATCTCACGTaGCGTATACATACGGAGTGCTTCCCTCTGCCTGAA | + |
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Preference number: 6 (lower is better) Translates to: DVLQERNNFYLT*RIHTECFPLPE Trigger: TTCAGGCAGAGGGAAGCACTCCGTATGTATACGTCACGTGAGATAGAAGTTATTTCTCTCCTGAAGAACATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154430.2 |
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