Pregenerated sensors for RPA3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000012483

Ensembl transcript IDs: ENSMUST00000012627.5

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR CCA 90 bp	TCCATTAAACTGCAGGAGTCTTCCTTAATAGCCTTCAGTGTAGCTTCCTGGCAAGATTTCCTCGTCAAGTaGCTCCATCAATTCAATGGT	+
Preference number: 4 (lower is better) Translates to: SIKLQESSLIAFSVASWQDFLVK*LHQFNG Trigger: ACCATTGAATTGATGGAGCCACTTGACGAGGAAATC...TTGCCAGGAAGCTACACTGAAGGCTATTAAGGAAGACTCCTGCAGTTTAATGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012627.5
CDS GCA 90 bp	TTCAAGATCAAAGCGATTAGTATCTTCCTTAAACAGGGTATAAGATaGACAGAGCACGGTCGCCTTGGCTGTGACTTTTCCAACTACTTC	+
Preference number: 5 (lower is better) Translates to: FKIKAISIFLKQGIR*TEHGRLGCDFSNYF Trigger: GAAGTAGTTGGAAAAGTCACAGCCAAGGCGACCGTGCTCTGTGCATCTTATACCCTGTTTAAGGAAGATACTAATCGCTTTGATCTTGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012627.5
CDS TCA 72 bp	GGGTATAAGATGCACAGAGCACGGTCGCCTTGGCTGTaGCTTTTCCAACTACTTCTACAATCCCAGAGATTT	+
Preference number: 6 (lower is better) Translates to: GYKMHRARSPWL*LFQLLLQSQRF Trigger: AAATCTCTGGGATTGTAGAAGTAGTTGGAAAAGTCACAGCCAAGGCGACCGTGCTCTGTGCATCTTATACCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012627.5

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