Pregenerated sensors for RP9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032239Ensembl transcript IDs: ENSMUST00000034763.10, ENSMUST00000215715.2, ENSMUST00000216973.2
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTCCTCCACCTTGCGCTGCCAGTCCTGCCCCATCTGGTCTCGAGCTaGCTTACGGGAGTTTTCGTCGGTGCGGCCCGCCGGCCTTGGCCT | + |
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Preference number: 1 (lower is better) Translates to: VLHLALPVLPHLVSS*LTGVFVGAARRPWP Trigger: AGGCCAAGGCCGGCGGGCCGCACCGACGAAAACTCCCGTAAGGCAGCTCGAGACCAGATGGGGCAGGACTGGCAGCGCAAGGTGGAGGAC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000215715.2 |
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| 3UTR TCA 90 bp | AGGAGCCCACCTGCTCTGCAGTGGTCACTTGGCACCAGGAGGCGGTaGGGGCCCAGGGCTGTGCTAGATGTCCAGTCTCTCACTCTCGGC | + |
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Preference number: 1 (lower is better) Translates to: RSPPALQWSLGTRRR*GPRAVLDVQSLTLG Trigger: GCCGAGAGTGAGAGACTGGACATCTAGCACAGCCCTGGGCCCTCACCGCCTCCTGGTGCCAAGTGACCACTGCAGAGCAGGTGGGCTCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034763.10 ENSMUST00000216973.2 |
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| 3UTR GCA 90 bp | GGGACGATGCTGGAGTCTATTCGCGTAACGGGTGAGTGTAGGCACTaGTGGCCCAAGTGGCGCGGCTGCAGCGGGTGGAGACCGTTGGGT | + |
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Preference number: 1 (lower is better) Translates to: GTMLESIRVTGECRH*WPKWRGCSGWRPLG Trigger: ACCCAACGGTCTCCACCCGCTGCAGCCGCGCCACTTGGGCCAGCAGTGCCTACACTCACCCGTTACGCGAATAGACTCCAGCATCGTCCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215715.2 |
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| 3UTR GCA 90 bp | AGCCTCATACAGATCCCGACCTCCCCACACAAACACCCCAGCCTCTaGGGACCAGCTCCTTGCACGGGTCCGCGTTGTGCACGCTGGGAG | + |
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Preference number: 1 (lower is better) Translates to: SLIQIPTSPHKHPSL*GPAPCTGPRCARWE Trigger: CTCCCAGCGTGCACAACGCGGACCCGTGCAAGGAGCTGGTCCGCAGAGGCTGGGGTGTTTGTGTGGGGAGGTCGGGATCTGTATGAGGCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000215715.2 |
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| 3UTR GCA 90 bp | ACACCCCAGCCTCTGCGGACCAGCTCCTTGCACGGGTCCGCGTTGTaGACGCTGGGAGTTGTAGTTCGCTTCCCTTCTCTCCCTACGAGC | + |
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Preference number: 1 (lower is better) Translates to: TPQPLRTSSLHGSAL*TLGVVVRFPSLPTS Trigger: GCTCGTAGGGAGAGAAGGGAAGCGAACTACAACTCCCAGCGTGCACAACGCGGACCCGTGCAAGGAGCTGGTCCGCAGAGGCTGGGGTGT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215715.2 |
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| 3UTR CCA 90 bp | ACGATGCTGGAGTCTATTCGCGTAACGGGTGAGTGTAGGCACTGCTaGCCCAAGTGGCGCGGCTGCAGCGGGTGGAGACCGTTGGGTCTG | + |
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Preference number: 1 (lower is better) Translates to: TMLESIRVTGECRHC*PKWRGCSGWRPLGL Trigger: CAGACCCAACGGTCTCCACCCGCTGCAGCCGCGCCACTTGGGCCAGCAGTGCCTACACTCACCCGTTACGCGAATAGACTCCAGCATCGT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215715.2 |
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| 3UTR CCA 90 bp | ACTAGGTGGAACCGCCAGAGCGCTTTCCAGCCTCTGGGTAAGACGTaGTCCTCCACCTTGCGCTGCCAGTCCTGCCCCATCTGGTCTCGA | + |
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Preference number: 1 (lower is better) Translates to: TRWNRQSAFQPLGKT*SSTLRCQSCPIWSR Trigger: TCGAGACCAGATGGGGCAGGACTGGCAGCGCAAGGTGGAGGACCACGTCTTACCCAGAGGCTGGAAAGCGCTCTGGCGGTTCCACCTAGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215715.2 |
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| 3UTR TCA 90 bp | CCTATTTATTTCATACCATGTAAATTAGCTGGAAGGTCAGGGGTCTaGATTTGCTCTGGTCAACTAAAACTCAGAATTATTACACCATTT | + |
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Preference number: 1 (lower is better) Translates to: PIYFIPCKLAGRSGV*ICSGQLKLRIITPF Trigger: AAATGGTGTAATAATTCTGAGTTTTAGTTGACCAGAGCAAATTCAGACCCCTGACCTTCCAGCTAATTTACATGGTATGAAATAAATAGG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000215715.2 |
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| 3UTR CAA 90 bp | CCCGACCTCCCCACACAAACACCCCAGCCTCTGCGGACCAGCTCCTaGCACGGGTCCGCGTTGTGCACGCTGGGAGTTGTAGTTCGCTTC | + |
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Preference number: 2 (lower is better) Translates to: PDLPTQTPQPLRTSS*HGSALCTLGVVVRF Trigger: GAAGCGAACTACAACTCCCAGCGTGCACAACGCGGACCCGTGCAAGGAGCTGGTCCGCAGAGGCTGGGGTGTTTGTGTGGGGAGGTCGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000215715.2 |
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| 3UTR-3UTR TCA 90 bp | GCCTCCAGCGGCGAGCATGTTTGGTGGCGTGGAGTGCGGGAAGAAGGCAGGATCCTAGCCCAGCAGAGGTaGGGGGCAAGAGCTGTGCAA | + |
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Preference number: 2 (lower is better) Translates to: ASSGEHVWWRGVREEGRILAQQR*GARAVQ Trigger: TTGCACAGCTCTTGCCCCTCACCTCTGCTGGGCTAG...GATCCTGCCTTCTTCCCGCACTCCACGCCACCAAACATGCTCGCCGCTGGAGGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000215715.2 |
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| 3UTR CAA 90 bp | CAAACACCCCAGCCTCTGCGGACCAGCTCCTTGCACGGGTCCGCGTaGTGCACGCTGGGAGTTGTAGTTCGCTTCCCTTCTCTCCCTACG | + |
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Preference number: 2 (lower is better) Translates to: QTPQPLRTSSLHGSA*CTLGVVVRFPSLPT Trigger: CGTAGGGAGAGAAGGGAAGCGAACTACAACTCCCAGCGTGCACAACGCGGACCCGTGCAAGGAGCTGGTCCGCAGAGGCTGGGGTGTTTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215715.2 |
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| 3UTR-3UTR GCA 90 bp | GTTGTAGTTCGCTTCCCTTCTCTCCCTACGAGCAGGGTGTCAGTCGCAGGAGCGGGTGAGTGTAGGCACTaGTGGCCCAAGTGGCGCGGC | + |
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Preference number: 2 (lower is better) Translates to: VVVRFPSLPTSRVSVAGAGECRH*WPKWRG Trigger: GCCGCGCCACTTGGGCCAGCAGTGCCTACACTCACC...CGCTCCTGCGACTGACACCCTGCTCGTAGGGAGAGAAGGGAAGCGAACTACAAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215715.2 |
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| 3UTR-3UTR CCA 90 bp | TCTCATCACCTCCCACTGCAGCGGCCTACTGAAGCAGTCACAGACACGGTGACCCCACCTGCTCTGCAGTaGTCACTTGGCACCAGGAGG | + |
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Preference number: 2 (lower is better) Translates to: SHHLPLQRPTEAVTDTVTPPALQ*SLGTRR Trigger: CCTCCTGGTGCCAAGTGACCACTGCAGAGCAGGTGG...GGTCACCGTGTCTGTGACTGCTTCAGTAGGCCGCTGCAGTGGGAGGTGATGAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034763.10 |
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| 3UTR-3UTR CCA 90 bp | CTTAAGTTCATGGAAAATGAGTTACCACACCATGGAGGGCAAACGCCGCCGTGGTCTGCAGTGGTCACTTaGCACCAGGAGGCGGTGAGG | + |
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Preference number: 2 (lower is better) Translates to: LKFMENELPHHGGQTPPWSAVVT*HQEAVR Trigger: CCTCACCGCCTCCTGGTGCCAAGTGACCACTGCAGA...CCACGGCGGCGTTTGCCCTCCATGGTGTGGTAACTCATTTTCCATGAACTTAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034763.10 |
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| 3UTR-3UTR GCA 90 bp | CATCATGAAATGAAGCCCTTTGAGCCTCATACAGATCCCGACCTCCCCACACAATTGCGCTGCCAGTCCTaGCCCATCTGGTCTCGAGCT | + |
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Preference number: 2 (lower is better) Translates to: HHEMKPFEPHTDPDLPTQLRCQS*PIWSRA Trigger: AGCTCGAGACCAGATGGGGCAGGACTGGCAGCGCAA...TTGTGTGGGGAGGTCGGGATCTGTATGAGGCTCAAAGGGCTTCATTTCATGATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215715.2 |
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| 3UTR-3UTR GCA 90 bp | CATGAAATGAAGCCCTTTGAGCCTCATACAGATCCCGACCTCCCCACACAAACATTTGGTGGCGTGGAGTaGGGGAAGAAGGCAGGATCG | + |
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Preference number: 2 (lower is better) Translates to: HEMKPFEPHTDPDLPTQTFGGVE*GKKAGS Trigger: CGATCCTGCCTTCTTCCCGCACTCCACGCCACCAAA...TGTTTGTGTGGGGAGGTCGGGATCTGTATGAGGCTCAAAGGGCTTCATTTCATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000215715.2 |
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| 3UTR-3UTR GCA 90 bp | ATCTTTGCTGCACATCTCAAGTGTTTGGATAACAGGAGTGTGCCACCATACCTGGAGGGGCAAGAGCTGTaGAATCTAGAGAGTGTAGAG | + |
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Preference number: 2 (lower is better) Translates to: IFAAHLKCLDNRSVPPYLEGQEL*NLESVE Trigger: CTCTACACTCTCTAGATTGCACAGCTCTTGCCCCTC...CAGGTATGGTGGCACACTCCTGTTATCCAAACACTTGAGATGTGCAGCAAAGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215715.2 |
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| 3UTR GCA 72 bp | TCTGGTCTCGAGCTGCCTTACGGGAGTTTTCGTCGGTaGGGCCCGCCGGCCTTGGCCTTGGCCTTGGCGGGA | + |
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Preference number: 3 (lower is better) Translates to: SGLELPYGSFRR*GPPALALALAG Trigger: TCCCGCCAAGGCCAAGGCCAAGGCCGGCGGGCCGCACCGACGAAAACTCCCGTAAGGCAGCTCGAGACCAGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215715.2 |
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| 3UTR CCA 72 bp | CGCGTAACGGGTGAGTGTAGGCACTGCTGGCCCAAGTaGCGCGGCTGCAGCGGGTGGAGACCGTTGGGTCTG | + |
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Preference number: 3 (lower is better) Translates to: RVTGECRHCWPK*RGCSGWRPLGL Trigger: CAGACCCAACGGTCTCCACCCGCTGCAGCCGCGCCACTTGGGCCAGCAGTGCCTACACTCACCCGTTACGCG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215715.2 |
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| 3UTR-3UTR CAA 90 bp | GCATGTTTGGTGGCGTGGAGTGCGGGAAGAAGGCAGGATCGTCTCCTAGCAACGTGCGGCCCGCCGGCCTaGGCCTTGGCCTTGGCGGGA | + |
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Preference number: 3 (lower is better) Translates to: ACLVAWSAGRRQDRLLATCGPPA*ALALAG Trigger: TCCCGCCAAGGCCAAGGCCAAGGCCGGCGGGCCGCA...CGTTGCTAGGAGACGATCCTGCCTTCTTCCCGCACTCCACGCCACCAAACATGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215715.2 |
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| 3UTR CCA 72 bp | GGAGTTTTCGTCGGTGCGGCCCGCCGGCCTTGGCCTTaGCCTTGGCGGGACGATGCTGGAGTCTATTCGCGT | + |
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Preference number: 3 (lower is better) Translates to: GVFVGAARRPWP*PWRDDAGVYSR Trigger: ACGCGAATAGACTCCAGCATCGTCCCGCCAAGGCCAAGGCCAAGGCCGGCGGGCCGCACCGACGAAAACTCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215715.2 |
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| 3UTR GCA 72 bp | GTAGAGGACACAGGTGTCGCAGGAGCCCACCTGCTCTaGAGTGGTCACTTGGCACCAGGAGGCGGTGAGGGC | + |
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Preference number: 3 (lower is better) Translates to: VEDTGVAGAHLL*SGHLAPGGGEG Trigger: GCCCTCACCGCCTCCTGGTGCCAAGTGACCACTGCAGAGCAGGTGGGCTCCTGCGACACCTGTGTCCTCTAC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034763.10 ENSMUST00000216973.2 |
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| 3UTR GCA 72 bp | GCGCCTCCAGCGGCGAGCATGTTTGGTGGCGTGGAGTaGGGGAAGAAGGCAGGATCGTCTCCTAGCAACGGG | + |
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Preference number: 3 (lower is better) Translates to: APPAASMFGGVE*GKKAGSSPSNG Trigger: CCCGTTGCTAGGAGACGATCCTGCCTTCTTCCCGCACTCCACGCCACCAAACATGCTCGCCGCTGGAGGCGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215715.2 |
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| 3UTR CCA 72 bp | GAGTCTATTCGCGTAACGGGTGAGTGTAGGCACTGCTaGCCCAAGTGGCGCGGCTGCAGCGGGTGGAGACCG | + |
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Preference number: 3 (lower is better) Translates to: ESIRVTGECRHC*PKWRGCSGWRP Trigger: CGGTCTCCACCCGCTGCAGCCGCGCCACTTGGGCCAGCAGTGCCTACACTCACCCGTTACGCGAATAGACTC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215715.2 |
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| 3UTR CCA 72 bp | CTTACGGGAGTTTTCGTCGGTGCGGCCCGCCGGCCTTaGCCTTGGCCTTGGCGGGACGATGCTGGAGTCTAT | + |
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Preference number: 3 (lower is better) Translates to: LTGVFVGAARRP*PWPWRDDAGVY Trigger: ATAGACTCCAGCATCGTCCCGCCAAGGCCAAGGCCAAGGCCGGCGGGCCGCACCGACGAAAACTCCCGTAAG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215715.2 |
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| 3UTR TCA 72 bp | CCTGCTCTGCAGTGGTCACTTGGCACCAGGAGGCGGTaGGGGCCCAGGGCTGTGCTAGATGTCCAGTCTCTC | + |
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Preference number: 3 (lower is better) Translates to: PALQWSLGTRRR*GPRAVLDVQSL Trigger: GAGAGACTGGACATCTAGCACAGCCCTGGGCCCTCACCGCCTCCTGGTGCCAAGTGACCACTGCAGAGCAGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034763.10 ENSMUST00000216973.2 |
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| 3UTR CCA 72 bp | AACCGCCAGAGCGCTTTCCAGCCTCTGGGTAAGACGTaGTCCTCCACCTTGCGCTGCCAGTCCTGCCCCATC | + |
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Preference number: 3 (lower is better) Translates to: NRQSAFQPLGKT*SSTLRCQSCPI Trigger: GATGGGGCAGGACTGGCAGCGCAAGGTGGAGGACCACGTCTTACCCAGAGGCTGGAAAGCGCTCTGGCGGTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215715.2 |
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| 3UTR GCA 72 bp | CCTCTGCGGACCAGCTCCTTGCACGGGTCCGCGTTGTaGACGCTGGGAGTTGTAGTTCGCTTCCCTTCTCTC | + |
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Preference number: 3 (lower is better) Translates to: PLRTSSLHGSAL*TLGVVVRFPSL Trigger: GAGAGAAGGGAAGCGAACTACAACTCCCAGCGTGCACAACGCGGACCCGTGCAAGGAGCTGGTCCGCAGAGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215715.2 |
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| 3UTR CCA 72 bp | AATGAGTTACCACACCATGGAGGGCAAACGCCGCCGTaGCAGTGCCCTAGAGTGTCTGCCCCTTCAGGGTCT | + |
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Preference number: 3 (lower is better) Translates to: NELPHHGGQTPP*QCPRVSAPSGS Trigger: AGACCCTGAAGGGGCAGACACTCTAGGGCACTGCCACGGCGGCGTTTGCCCTCCATGGTGTGGTAACTCATT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034763.10 |
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| 3UTR TCA 72 bp | AGGGTCTTCTCATCACCTCCCACTGCAGCGGCCTACTaGAGCAGTCACAGACACGGTGACCATAAGGTAGAG | + |
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Preference number: 3 (lower is better) Translates to: RVFSSPPTAAAY*SSHRHGDHKVE Trigger: CTCTACCTTATGGTCACCGTGTCTGTGACTGCTTCAGTAGGCCGCTGCAGTGGGAGGTGATGAGAAGACCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034763.10 |
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| 3UTR CCA 72 bp | TCCCAAACCACAAAGAAGGGTGAAGCCTTAAGTTCATaGAAAATGAGTTACCACACCATGGAGGGCAAACGC | + |
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Preference number: 3 (lower is better) Translates to: SQTTKKGEALSS*KMSYHTMEGKR Trigger: GCGTTTGCCCTCCATGGTGTGGTAACTCATTTTCCATGAACTTAAGGCTTCACCCTTCTTTGTGGTTTGGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034763.10 |
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| 3UTR TCA 72 bp | ATTACACCATTTCTATTTCCCTCTACCATCATGAAATaGAGCCCTTTGAGCCTCATACAGATCCCGACCTCC | + |
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Preference number: 3 (lower is better) Translates to: ITPFLFPSTIMK*SPLSLIQIPTS Trigger: GGAGGTCGGGATCTGTATGAGGCTCAAAGGGCTTCATTTCATGATGGTAGAGGGAAATAGAAATGGTGTAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215715.2 |
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| 3UTR TCA 72 bp | ACATGGACTTTTATTATCCCAAACCACAAAGAAGGGTaGAGCCTTAAGTTCATGGAAAATGAGTTACCACAC | + |
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Preference number: 3 (lower is better) Translates to: TWTFIIPNHKEG*SLKFMENELPH Trigger: GTGTGGTAACTCATTTTCCATGAACTTAAGGCTTCACCCTTCTTTGTGGTTTGGGATAATAAAAGTCCATGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034763.10 |
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| 3UTR TCA 72 bp | AAAATTCACTATATAGCAATGATGGTCTTGAACCCCTaGTCATCTTTGCTGCACATCTCAAGTGTTTGGATA | + |
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Preference number: 3 (lower is better) Translates to: KIHYIAMMVLNP*SSLLHISSVWI Trigger: TATCCAAACACTTGAGATGTGCAGCAAAGATGATCAGGGGTTCAAGACCATCATTGCTATATAGTGAATTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000215715.2 |
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| CDS-3UTR GCA 90 bp | AGTTTTCGTCGGTGCGGCCCGCCGGCCTTGGCCTTGGCCTTGGCGGGACGATGCAGCTGCTGCAGCTGCTaGGCGTCGTGCCGCCGCCGT | + |
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Preference number: 4 (lower is better) Translates to: SFRRCGPPALALALAGRCSCCSC*ASCRRR Trigger: ACGGCGGCGGCACGACGCGCAGCAGCTGCAGCAGCT...GCATCGTCCCGCCAAGGCCAAGGCCAAGGCCGGCGGGCCGCACCGACGAAAACT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215715.2 |
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| 3UTR CAA 72 bp | GGGAGTTTTCGTCGGTGCGGCCCGCCGGCCTTGGCCTaGGCCTTGGCGGGACGATGCTGGAGTCTATTCGCG | + |
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Preference number: 4 (lower is better) Translates to: GSFRRCGPPALA*ALAGRCWSLFA Trigger: CGCGAATAGACTCCAGCATCGTCCCGCCAAGGCCAAGGCCAAGGCCGGCGGGCCGCACCGACGAAAACTCCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215715.2 |
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| CDS-3UTR GCA 90 bp | ACAGGTGTCGCAGGAGCCCACCTGCTCTGCAGTGGTCACTTGGCACCAGGAGGCAGCTGCTGCGCGTCGTaGCGCCGCCGTTTCTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: TGVAGAHLLCSGHLAPGGSCCAS*RRRFCS Trigger: GGAGCAGAAACGGCGGCGGCACGACGCGCAGCAGCT...GCCTCCTGGTGCCAAGTGACCACTGCAGAGCAGGTGGGCTCCTGCGACACCTGT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034763.10 |
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| CDS-3UTR CCA 90 bp | CAGGAGCCCACCTGCTCTGCAGTGGTCACTTGGCACCAGGAGGCGGTGAGGGCCTGTCCCCCGAGGAGCTaGAGCTGCTCCCGTCGTCAT | + |
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Preference number: 4 (lower is better) Translates to: QEPTCSAVVTWHQEAVRACPPRS*SCSRRH Trigger: ATGACGACGGGAGCAGCTCCAGCTCCTCGGGGGACA...GGCCCTCACCGCCTCCTGGTGCCAAGTGACCACTGCAGAGCAGGTGGGCTCCTG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034763.10 ENSMUST00000216973.2 |
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| CDS-3UTR CCA 90 bp | CACCTGCTCTGCAGTGGTCACTTGGCACCAGGAGGCGGTGAGGGCCCAGGGCTGTGTCCCCCGAGGAGCTaGAGCTGCTCCCGTCGTCAT | + |
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Preference number: 4 (lower is better) Translates to: HLLCSGHLAPGGGEGPGLCPPRS*SCSRRH Trigger: ATGACGACGGGAGCAGCTCCAGCTCCTCGGGGGACA...CAGCCCTGGGCCCTCACCGCCTCCTGGTGCCAAGTGACCACTGCAGAGCAGGTG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034763.10 ENSMUST00000216973.2 |
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| CDS-3UTR GCA 90 bp | ACACAGGTGTCGCAGGAGCCCACCTGCTCTGCAGTGGTCACTTGGCACCAGGAGTTGAGCTGCTGCAGCTaGTGCGCGTCGTGCCGCCGC | + |
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Preference number: 4 (lower is better) Translates to: TQVSQEPTCSAVVTWHQELSCCS*CASCRR Trigger: GCGGCGGCACGACGCGCAGCAGCTGCAGCAGCTCAA...CTCCTGGTGCCAAGTGACCACTGCAGAGCAGGTGGGCTCCTGCGACACCTGTGT 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034763.10 |
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| CDS-3UTR GCA 90 bp | ATGGAGGGCAAACGCCGCCGTGGCAGTGCCCTAGAGTGTCTGCCCCTTCAGGGTAGGTGCTTGAGCTGCTaGAGCTGCTGCGCGTCGTGC | + |
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Preference number: 4 (lower is better) Translates to: MEGKRRRGSALECLPLQGRCLSC*SCCASC Trigger: GCACGACGCGCAGCAGCTGCAGCAGCTCAAGCACCT...ACCCTGAAGGGGCAGACACTCTAGGGCACTGCCACGGCGGCGTTTGCCCTCCAT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034763.10 |
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| 3UTR CAA 72 bp | TGTCAGTCGCAGGAGCGCCTCCAGCGGCGAGCATGTTaGGTGGCGTGGAGTGCGGGAAGAAGGCAGGATCGT | + |
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Preference number: 4 (lower is better) Translates to: CQSQERLQRRAC*VAWSAGRRQDR Trigger: ACGATCCTGCCTTCTTCCCGCACTCCACGCCACCAAACATGCTCGCCGCTGGAGGCGCTCCTGCGACTGACA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215715.2 |
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| CDS-3UTR GCA 90 bp | CGTGGCGGGTTCTTAGCTCTGAGACTAGGTGGAACCGCCAGAGCGCTTTCCAGCTCCAGGTGCTTGAGCTaGTGCAGCTGCTGCGCGTCG | + |
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Preference number: 4 (lower is better) Translates to: RGGFLALRLGGTARALSSSRCLS*CSCCAS Trigger: CGACGCGCAGCAGCTGCAGCAGCTCAAGCACCTGGA...GCTGGAAAGCGCTCTGGCGGTTCCACCTAGTCTCAGAGCTAAGAACCCGCCACG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215715.2 |
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| CDS-3UTR GCA 90 bp | GGGAGTTGTAGTTCGCTTCCCTTCTCTCCCTACGAGCAGGGTGTCAGTCGCAGGAGGTGCTTGAGCTGCTaGAGCTGCTGCGCGTCGTGC | + |
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Preference number: 4 (lower is better) Translates to: GSCSSLPFSPYEQGVSRRRCLSC*SCCASC Trigger: GCACGACGCGCAGCAGCTGCAGCAGCTCAAGCACCT...CCTGCGACTGACACCCTGCTCGTAGGGAGAGAAGGGAAGCGAACTACAACTCCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215715.2 |
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| CDS-3UTR GCA 90 bp | GAAGCCTTAAGTTCATGGAAAATGAGTTACCACACCATGGAGGGCAAACGCCGCAGCTGCTGCAGCTGCTaGGCGTCGTGCCGCCGCCGT | + |
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Preference number: 4 (lower is better) Translates to: EALSSWKMSYHTMEGKRRSCCSC*ASCRRR Trigger: ACGGCGGCGGCACGACGCGCAGCAGCTGCAGCAGCT...GCGGCGTTTGCCCTCCATGGTGTGGTAACTCATTTTCCATGAACTTAAGGCTTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034763.10 |
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| CDS-3UTR GCA 90 bp | CATGAAATGAAGCCCTTTGAGCCTCATACAGATCCCGACCTCCCCACACAAACAAGCTGCTGCGCGTCGTaGCGCCGCCGTTTCTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: HEMKPFEPHTDPDLPTQTSCCAS*RRRFCS Trigger: GGAGCAGAAACGGCGGCGGCACGACGCGCAGCAGCT...TGTTTGTGTGGGGAGGTCGGGATCTGTATGAGGCTCAAAGGGCTTCATTTCATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215715.2 |
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| CDS-3UTR CCA 90 bp | AGAGGACACAGGTGTCGCAGGAGCCCACCTGCTCTGCAGTGGTCACTTGGCACCAGCTCTCACTGGACTTaGAAGCCTTGTGCTTCCGTT | + |
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Preference number: 4 (lower is better) Translates to: RGHRCRRSPPALQWSLGTSSHWT*KPCASV Trigger: AACGGAAGCACAAGGCTTCCAAGTCCAGTGAGAGCT...GGTGCCAAGTGACCACTGCAGAGCAGGTGGGCTCCTGCGACACCTGTGTCCTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034763.10 ENSMUST00000216973.2 |
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| CDS-3UTR CCA 90 bp | ACACAGGTGTCGCAGGAGCCCACCTGCTCTGCAGTGGTCACTTGGCACCAGGAGAGTCAGAGCTCTCACTaGACTTGGAAGCCTTGTGCT | + |
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Preference number: 4 (lower is better) Translates to: TQVSQEPTCSAVVTWHQESQSSH*TWKPCA Trigger: AGCACAAGGCTTCCAAGTCCAGTGAGAGCTCTGACT...CTCCTGGTGCCAAGTGACCACTGCAGAGCAGGTGGGCTCCTGCGACACCTGTGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034763.10 ENSMUST00000216973.2 |
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| CDS-3UTR GCA 90 bp | CTTAAGTTCATGGAAAATGAGTTACCACACCATGGAGGGCAAACGCCGCCGTGGTCCAGGTGCTTGAGCTaGTGCAGCTGCTGCGCGTCG | + |
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Preference number: 4 (lower is better) Translates to: LKFMENELPHHGGQTPPWSRCLS*CSCCAS Trigger: CGACGCGCAGCAGCTGCAGCAGCTCAAGCACCTGGA...CCACGGCGGCGTTTGCCCTCCATGGTGTGGTAACTCATTTTCCATGAACTTAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034763.10 |
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| CDS-3UTR CCA 90 bp | CAGGAGCCCACCTGCTCTGCAGTGGTCACTTGGCACCAGGAGGCGGTGAGGGCCAACTGCTTTAACTGCTaGATCCTTACATCCTTTTCA | + |
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Preference number: 4 (lower is better) Translates to: QEPTCSAVVTWHQEAVRANCFNC*ILTSFS Trigger: TGAAAAGGATGTAAGGATCCAGCAGTTAAAGCAGTT...GGCCCTCACCGCCTCCTGGTGCCAAGTGACCACTGCAGAGCAGGTGGGCTCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034763.10 ENSMUST00000216973.2 |
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| CDS-3UTR CCA 90 bp | GACCATAAGGTAGAGGACACAGGTGTCGCAGGAGCCCACCTGCTCTGCAGTGGTAGTCAGAGCTCTCACTaGACTTGGAAGCCTTGTGCT | + |
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Preference number: 4 (lower is better) Translates to: DHKVEDTGVAGAHLLCSGSQSSH*TWKPCA Trigger: AGCACAAGGCTTCCAAGTCCAGTGAGAGCTCTGACT...ACCACTGCAGAGCAGGTGGGCTCCTGCGACACCTGTGTCCTCTACCTTATGGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034763.10 ENSMUST00000216973.2 |
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| CDS-3UTR GCA 90 bp | GGTAGAGGACACAGGTGTCGCAGGAGCCCACCTGCTCTGCAGTGGTCACTTGGCAGTAACTGCTTTAACTaGTGGATCCTTACATCCTTT | + |
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Preference number: 4 (lower is better) Translates to: GRGHRCRRSPPALQWSLGSNCFN*WILTSF Trigger: AAAGGATGTAAGGATCCAGCAGTTAAAGCAGTTACT...GCCAAGTGACCACTGCAGAGCAGGTGGGCTCCTGCGACACCTGTGTCCTCTACC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034763.10 ENSMUST00000216973.2 |
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| CDS-3UTR GCA 90 bp | AGAGGACACAGGTGTCGCAGGAGCCCACCTGCTCTGCAGTGGTCACTTGGCACCAGTAACTGCTTTAACTaGTGGATCCTTACATCCTTT | + |
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Preference number: 4 (lower is better) Translates to: RGHRCRRSPPALQWSLGTSNCFN*WILTSF Trigger: AAAGGATGTAAGGATCCAGCAGTTAAAGCAGTTACT...GGTGCCAAGTGACCACTGCAGAGCAGGTGGGCTCCTGCGACACCTGTGTCCTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034763.10 ENSMUST00000216973.2 |
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| CDS-3UTR CCA 90 bp | GAAGCCTTAAGTTCATGGAAAATGAGTTACCACACCATGGAGGGCAAACGCCGCAACTGCTTTAACTGCTaGATCCTTACATCCTTTTCA | + |
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Preference number: 4 (lower is better) Translates to: EALSSWKMSYHTMEGKRRNCFNC*ILTSFS Trigger: TGAAAAGGATGTAAGGATCCAGCAGTTAAAGCAGTT...GCGGCGTTTGCCCTCCATGGTGTGGTAACTCATTTTCCATGAACTTAAGGCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034763.10 |
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| CDS-3UTR CAA 90 bp | GCCCAGGGCTGTGCTAGATGTCCAGTCTCTCACTCTCGGCGGCGGCTCTGTCCTCTGGACTTGGAAGCCTaGTGCTTCCGTTTCTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: AQGCARCPVSHSRRRLCPLDLEA*CFRFFF Trigger: GAAGAAGAAACGGAAGCACAAGGCTTCCAAGTCCAG...AGGACAGAGCCGCCGCCGAGAGTGAGAGACTGGACATCTAGCACAGCCCTGGGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034763.10 ENSMUST00000216973.2 |
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| CDS-3UTR CAA 90 bp | GAGGACACAGGTGTCGCAGGAGCCCACCTGCTCTGCAGTGGTCACTTGGCACCACTGGACTTGGAAGCCTaGTGCTTCCGTTTCTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: EDTGVAGAHLLCSGHLAPLDLEA*CFRFFF Trigger: GAAGAAGAAACGGAAGCACAAGGCTTCCAAGTCCAG...TGGTGCCAAGTGACCACTGCAGAGCAGGTGGGCTCCTGCGACACCTGTGTCCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034763.10 ENSMUST00000216973.2 |
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| CDS-3UTR CAA 90 bp | CACGGTGACCATAAGGTAGAGGACACAGGTGTCGCAGGAGCCCACCTGCTCTGCCGATGGCCATACCGTTaGCAACGCCAACATTGCATA | + |
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Preference number: 5 (lower is better) Translates to: HGDHKVEDTGVAGAHLLCRWPYR*QRQHCI Trigger: TATGCAATGTTGGCGTTGCAAACGGTATGGCCATCG...GCAGAGCAGGTGGGCTCCTGCGACACCTGTGTCCTCTACCTTATGGTCACCGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034763.10 ENSMUST00000216973.2 |
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| CDS-3UTR CAA 90 bp | CGTGGCGGGTTCTTAGCTCTGAGACTAGGTGGAACCGCCAGAGCGCTTTCCAGCCGATGGCCATACCGTTaGCAACGCCAACATTGCATA | + |
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Preference number: 5 (lower is better) Translates to: RGGFLALRLGGTARALSSRWPYR*QRQHCI Trigger: TATGCAATGTTGGCGTTGCAAACGGTATGGCCATCG...GCTGGAAAGCGCTCTGGCGGTTCCACCTAGTCTCAGAGCTAAGAACCCGCCACG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215715.2 |
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| CDS-3UTR CAA 90 bp | TTGCAGCGACGTCACCGTGGCGGGTTCTTAGCTCTGAGACTAGGTGGAACCGCCTTTGCAACGCCAACATaGCATAACTTTGACCTCTCT | + |
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Preference number: 5 (lower is better) Translates to: LQRRHRGGFLALRLGGTAFATPT*HNFDLS Trigger: AGAGAGGTCAAAGTTATGCAATGTTGGCGTTGCAAA...GGCGGTTCCACCTAGTCTCAGAGCTAAGAACCCGCCACGGTGACGTCGCTGCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215715.2 |
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| CDS-3UTR CAA 90 bp | GACCATAAGGTAGAGGACACAGGTGTCGCAGGAGCCCACCTGCTCTGCAGTGGTTTTGCAACGCCAACATaGCATAACTTTGACCTCTCT | + |
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Preference number: 5 (lower is better) Translates to: DHKVEDTGVAGAHLLCSGFATPT*HNFDLS Trigger: AGAGAGGTCAAAGTTATGCAATGTTGGCGTTGCAAA...ACCACTGCAGAGCAGGTGGGCTCCTGCGACACCTGTGTCCTCTACCTTATGGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034763.10 ENSMUST00000216973.2 |
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| CDS-3UTR CAA 90 bp | CTTAAGTTCATGGAAAATGAGTTACCACACCATGGAGGGCAAACGCCGCCGTGGTTTGCAACGCCAACATaGCATAACTTTGACCTCTCT | + |
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Preference number: 5 (lower is better) Translates to: LKFMENELPHHGGQTPPWFATPT*HNFDLS Trigger: AGAGAGGTCAAAGTTATGCAATGTTGGCGTTGCAAA...CCACGGCGGCGTTTGCCCTCCATGGTGTGGTAACTCATTTTCCATGAACTTAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034763.10 |
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| CDS GCA 72 bp | TCTTGCGCTTCTCTCTGTCCCCCGAGGAGCTGGAGCTaGTCCCGTCGTCATCTGAGGTGGAGTCCTCCAGTA | + |
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Preference number: 6 (lower is better) Translates to: SCASLCPPRSWS*SRRHLRWSPPV Trigger: TACTGGAGGACTCCACCTCAGATGACGACGGGAGCAGCTCCAGCTCCTCGGGGGACAGAGAGAAGCGCAAGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034763.10 ENSMUST00000216973.2 |
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| CDS CAA 72 bp | TGGCCATACCGTTTGCAACGCCAACATTGCATAACTTaGACCTCTCTCCCCAGGGGCATCCACAGTCCTTTA | + |
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Preference number: 6 (lower is better) Translates to: WPYRLQRQHCIT*TSLPRGIHSPL Trigger: TAAAGGACTGTGGATGCCCCTGGGGAGAGAGGTCAAAGTTATGCAATGTTGGCGTTGCAAACGGTATGGCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034763.10 ENSMUST00000215715.2 |
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