RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025900

Ensembl transcript IDs: ENSMUST00000027032.6, ENSMUST00000208660.2

Found 204 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp CATGCGTGCTTATGGAGCGACTACTCAGCCAGGGCCGAGGGCGCCTaGGGGCCTTGTCCAGGTCAACTGGCAGCACCTTCTTATTGTGGG +
Preference number: 5 (lower is better)
Translates to: HACLWSDYSARAEGA*GPCPGQLAAPSYCG
Trigger: CCCACAATAAGAAGGTGCTGCCAGTTGACCTGGACAAGGCCCGCAGGCGCCCTCGGCCCTGGCTGAGTAGTCGCTCCATAAGCACGCATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS GCA 90 bp GGTGCCATGGTGGACATATTGGCAGTTGCAGGACAGAGCTGCACATaGGTGCTTATGGAGCGACTACTCAGCCAGGGCCGAGGGCGCCTG +
Preference number: 5 (lower is better)
Translates to: GAMVDILAVAGQSCT*VLMERLLSQGRGRL
Trigger: CAGGCGCCCTCGGCCCTGGCTGAGTAGTCGCTCCATAAGCACGCATGTGCAGCTCTGTCCTGCAACTGCCAATATGTCCACCATGGCACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS CCA 90 bp ACTCAGCCAGGGCCGAGGGCGCCTGCGGGCCTTGTCCAGGTCAACTaGCAGCACCTTCTTATTGTGGGAGCACACATAAGACTTGCCGTC +
Preference number: 5 (lower is better)
Translates to: TQPGPRAPAGLVQVN*QHLLIVGAHIRLAV
Trigger: GACGGCAAGTCTTATGTGTGCTCCCACAATAAGAAGGTGCTGCCAGTTGACCTGGACAAGGCCCGCAGGCGCCCTCGGCCCTGGCTGAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS CCA 90 bp TGGACATATTGGCAGTTGCAGGACAGAGCTGCACATGCGTGCTTATaGAGCGACTACTCAGCCAGGGCCGAGGGCGCCTGCGGGCCTTGT +
Preference number: 5 (lower is better)
Translates to: WTYWQLQDRAAHACL*SDYSARAEGACGPC
Trigger: ACAAGGCCCGCAGGCGCCCTCGGCCCTGGCTGAGTAGTCGCTCCATAAGCACGCATGTGCAGCTCTGTCCTGCAACTGCCAATATGTCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS GCA 90 bp GGTCACCATTCCGGAAGACCACGAGCCTCCTTGGGGCACGGAGCATaGCAGGTGCCATGGTGGACATATTGGCAGTTGCAGGACAGAGCT +
Preference number: 5 (lower is better)
Translates to: GHHSGRPRASLGHGA*QVPWWTYWQLQDRA
Trigger: AGCTCTGTCCTGCAACTGCCAATATGTCCACCATGGCACCTGGCATGCTCCGTGCCCCAAGGAGGCTCGTGGTCTTCCGGAATGGTGACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS CCA 90 bp GCCTCCTTGGGGCACGGAGCATGCCAGGTGCCATGGTGGACATATTaGCAGTTGCAGGACAGAGCTGCACATGCGTGCTTATGGAGCGAC +
Preference number: 5 (lower is better)
Translates to: ASLGHGACQVPWWTY*QLQDRAAHACLWSD
Trigger: GTCGCTCCATAAGCACGCATGTGCAGCTCTGTCCTGCAACTGCCAATATGTCCACCATGGCACCTGGCATGCTCCGTGCCCCAAGGAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS GCA 90 bp ATGCCAGGTGCCATGGTGGACATATTGGCAGTTGCAGGACAGAGCTaGACATGCGTGCTTATGGAGCGACTACTCAGCCAGGGCCGAGGG +
Preference number: 5 (lower is better)
Translates to: MPGAMVDILAVAGQS*TCVLMERLLSQGRG
Trigger: CCCTCGGCCCTGGCTGAGTAGTCGCTCCATAAGCACGCATGTGCAGCTCTGTCCTGCAACTGCCAATATGTCCACCATGGCACCTGGCAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS CCA 90 bp AGACCACGAGCCTCCTTGGGGCACGGAGCATGCCAGGTGCCATGGTaGACATATTGGCAGTTGCAGGACAGAGCTGCACATGCGTGCTTA +
Preference number: 5 (lower is better)
Translates to: RPRASLGHGACQVPW*TYWQLQDRAAHACL
Trigger: TAAGCACGCATGTGCAGCTCTGTCCTGCAACTGCCAATATGTCCACCATGGCACCTGGCATGCTCCGTGCCCCAAGGAGGCTCGTGGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS GCA 90 bp TGGGGCACGGAGCATGCCAGGTGCCATGGTGGACATATTGGCAGTTaGAGGACAGAGCTGCACATGCGTGCTTATGGAGCGACTACTCAG +
Preference number: 5 (lower is better)
Translates to: WGTEHARCHGGHIGS*RTELHMRAYGATTQ
Trigger: CTGAGTAGTCGCTCCATAAGCACGCATGTGCAGCTCTGTCCTGCAACTGCCAATATGTCCACCATGGCACCTGGCATGCTCCGTGCCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS CCA 90 bp GGGTGTGCCCAGGAAGCAGCACTGACTCAAGAAGCACACAACGGTTaGGCTGATAAATCACCTGCAGCTCAGAGTGGCCTCCTCCACCAA +
Preference number: 5 (lower is better)
Translates to: GCAQEAALTQEAHNG*ADKSPAAQSGLLHQ
Trigger: TTGGTGGAGGAGGCCACTCTGAGCTGCAGGTGATTTATCAGCCCAACCGTTGTGTGCTTCTTGAGTCAGTGCTGCTTCCTGGGCACACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS TCA 90 bp GCAGATCCCAGAACTGATTCTATGCACTCTCCAGTGGGATTGTTCTaGTTGGTTCCCTGCTCCTGTGCAGGTCCCATTGGGCTGCAGACA +
Preference number: 5 (lower is better)
Translates to: ADPRTDSMHSPVGLF*LVPCSCAGPIGLQT
Trigger: TGTCTGCAGCCCAATGGGACCTGCACAGGAGCAGGGAACCAATCAGAACAATCCCACTGGAGAGTGCATAGAATCAGTTCTGGGATCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CCA 90 bp ATCCCAGAACTGATTCTATGCACTCTCCAGTGGGATTGTTCTGATTaGTTCCCTGCTCCTGTGCAGGTCCCATTGGGCTGCAGACACAGG +
Preference number: 5 (lower is better)
Translates to: IPELILCTLQWDCSD*FPAPVQVPLGCRHR
Trigger: CCTGTGTCTGCAGCCCAATGGGACCTGCACAGGAGCAGGGAACCAATCAGAACAATCCCACTGGAGAGTGCATAGAATCAGTTCTGGGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CCA 90 bp CTGATGATGATGGTGAGGAACATCTGGCCTTGGATTCTGGTGGTGTaGTCTTGTCCTCCCCTTGGCTGGGTGTTGCAGACATTCCCATTG +
Preference number: 5 (lower is better)
Translates to: LMMMVRNIWPWILVV*SCPPLGWVLQTFPL
Trigger: CAATGGGAATGTCTGCAACACCCAGCCAAGGGGAGGACAAGACCACACCACCAGAATCCAAGGCCAGATGTTCCTCACCATCATCATCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS GCA 90 bp CTTGGATTCTGGTGGTGTGGTCTTGTCCTCCCCTTGGCTGGGTGTTaGAGACATTCCCATTGGGTTTTCTCTGCCAAATTGGATGACACG +
Preference number: 5 (lower is better)
Translates to: LGFWWCGLVLPLAGC*RHSHWVFSAKLDDT
Trigger: CGTGTCATCCAATTTGGCAGAGAAAACCCAATGGGAATGTCTGCAACACCCAGCCAAGGGGAGGACAAGACCACACCACCAGAATCCAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CCA 90 bp CTTAAAGGAACGAGGGTTGACCACCACCCGAACGCCGCCAAACTGTaGGTCTCCACTCTTATAGAAACTGATGCGTTTAGCCACTACAGG +
Preference number: 5 (lower is better)
Translates to: LKGTRVDHHPNAAKL*VSTLIETDAFSHYR
Trigger: CCTGTAGTGGCTAAACGCATCAGTTTCTATAAGAGTGGAGACCCACAGTTTGGCGGCGTTCGGGTGGTGGTCAACCCTCGTTCCTTTAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS CCA 90 bp ACCATATCTGTCTGTCTGCTCCCCAGCAGCATCGACCGTGCCATCTaGATGAAGACGGACAAACCCTCCACTGAGCTTGTTGTAAAACTG +
Preference number: 5 (lower is better)
Translates to: TISVCLLPSSIDRAI*MKTDKPSTELVVKL
Trigger: CAGTTTTACAACAAGCTCAGTGGAGGGTTTGTCCGTCTTCATCCAGATGGCACGGTCGATGCTGCTGGGGAGCAGACAGACAGATATGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CCA 90 bp GAACATCTGGCCTTGGATTCTGGTGGTGTGGTCTTGTCCTCCCCTTaGCTGGGTGTTGCAGACATTCCCATTGGGTTTTCTCTGCCAAAT +
Preference number: 5 (lower is better)
Translates to: EHLALDSGGVVLSSP*LGVADIPIGFSLPN
Trigger: ATTTGGCAGAGAAAACCCAATGGGAATGTCTGCAACACCCAGCCAAGGGGAGGACAAGACCACACCACCAGAATCCAAGGCCAGATGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CCA 90 bp GAGCTGCCTGGATCTTTGACGATGATCTTCTCACAGTACCAGTACTaGGATTTGTCACTGGCCTCACAGTGCAACAGCGCCTTCTGTAGG +
Preference number: 5 (lower is better)
Translates to: ELPGSLTMIFSQYQY*DLSLASQCNSAFCR
Trigger: CCTACAGAAGGCGCTGTTGCACTGTGAGGCCAGTGACAAATCCCAGTACTGGTACTGTGAGAAGATCATCGTCAAAGATCCAGGCAGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CCA 90 bp TTTTGTAAGTTACCACCGGAAGTGGCCCTCTGTGTGCCCTTACAGTaGGCACCTCTTTCCATGTGTCCCCATCGTCTTCACTCTCAGATA +
Preference number: 5 (lower is better)
Translates to: FCKLPPEVALCVPLQ*APLSMCPHRLHSQI
Trigger: TATCTGAGAGTGAAGACGATGGGGACACATGGAAAGAGGTGCCCACTGTAAGGGCACACAGAGGGCCACTTCCGGTGGTAACTTACAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS GCA 90 bp ATCTTCTCACAGTACCAGTACTGGGATTTGTCACTGGCCTCACAGTaGAACAGCGCCTTCTGTAGGTTTCCTAGAGACACTGCTTCGATC +
Preference number: 5 (lower is better)
Translates to: IFSQYQYWDLSLASQ*NSAFCRFPRDTASI
Trigger: GATCGAAGCAGTGTCTCTAGGAAACCTACAGAAGGCGCTGTTGCACTGTGAGGCCAGTGACAAATCCCAGTACTGGTACTGTGAGAAGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS TCA 90 bp ATCTGTGACAGAAGAAGGCATACTCATGGTTGGTTGTGGGATCCCTaGCCACAACATCCTCAAGAAACCAGCCATTTCCTTGCCCAAGTC +
Preference number: 5 (lower is better)
Translates to: ICDRRRHTHGWLWDP*PQHPQETSHFLAQV
Trigger: GACTTGGGCAAGGAAATGGCTGGTTTCTTGAGGATGTTGTGGTCAGGGATCCCACAACCAACCATGAGTATGCCTTCTTCTGTCACAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS TCA 90 bp TTCGGACATGAAGGGAATCCACCTCTCACAGGTGAAGATGGATTCTaGGGAGCTGCCTGGATCTTTGACGATGATCTTCTCACAGTACCA +
Preference number: 5 (lower is better)
Translates to: FGHEGNPPLTGEDGF*GAAWIFDDDLLTVP
Trigger: TGGTACTGTGAGAAGATCATCGTCAAAGATCCAGGCAGCTCCTCAGAATCCATCTTCACCTGTGAGAGGTGGATTCCCTTCATGTCCGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS GCA 90 bp GCAACAGCAGCCTTCAAGTCATCAGCTTCCTCTGTGATGGCAACATaGTTCAGAACTTCCAACAATGCAGCAGTTTCCGAAGGTCTGTTG +
Preference number: 5 (lower is better)
Translates to: ATAAFKSSASSVMAT*FRTSNNAAVSEGLL
Trigger: CAACAGACCTTCGGAAACTGCTGCATTGTTGGAAGTTCTGAAGCATGTTGCCATCACAGAGGAAGCTGATGACTTGAAGGCTGCTGTTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CCA 90 bp CTTTCAAACATGCAGATCCCAGAACTGATTCTATGCACTCTCCAGTaGGATTGTTCTGATTGGTTCCCTGCTCCTGTGCAGGTCCCATTG +
Preference number: 5 (lower is better)
Translates to: LSNMQIPELILCTLQ*DCSDWFPAPVQVPL
Trigger: CAATGGGACCTGCACAGGAGCAGGGAACCAATCAGAACAATCCCACTGGAGAGTGCATAGAATCAGTTCTGGGATCTGCATGTTTGAAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS TCA 90 bp GCATTGCCGTACATGCCAGGATTGTCCGATGACACCCGCCACAAATaGTTTTCTCTCAGGAGCCATTTGCCATTGTCAATCAGTTTTCCA +
Preference number: 5 (lower is better)
Translates to: ALPYMPGLSDDTRHK*FSLRSHLPLSISFP
Trigger: TGGAAAACTGATTGACAATGGCAAATGGCTCCTGAGAGAAAATCATTTGTGGCGGGTGTCATCGGACAATCCTGGCATGTACGGCAATGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS GCA 90 bp GAGCCTGCTGCTCTGTCATTTGAGTATTTTCTTCCTCTGTCAAACTaGCCTGCTGAGTGGTATCTACGATGTCTTCAGGCAACGAACATG +
Preference number: 5 (lower is better)
Translates to: EPAALSFEYFLPLSN*PAEWYLRCLQATNM
Trigger: CATGTTCGTTGCCTGAAGACATCGTAGATACCACTCAGCAGGGCAGTTTGACAGAGGAAGAAAATACTCAAATGACAGAGCAGCAGGCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CCA 90 bp CTGGTAGCATATCTTGTTCTCTCCCACTGGACCCACTGCAAGTTTTaGTTGATTCCATCAAGTTGGCAACAGCAGCCTTCAAGTCATCAG +
Preference number: 5 (lower is better)
Translates to: LVAYLVLSHWTHCKF*LIPSSWQQQPSSHQ
Trigger: CTGATGACTTGAAGGCTGCTGTTGCCAACTTGATGGAATCAACCAAAACTTGCAGTGGGTCCAGTGGGAGAGAACAAGATATGCTACCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CCA 90 bp ATGGCACCTCAATGCTGTTCTTATCTATTAGAGTATCCACTGATGTaGTGTCTGCATTGCCGTACATGCCAGGATTGTCCGATGACACCC +
Preference number: 5 (lower is better)
Translates to: MAPQCCSYLLEYPLM*CLHCRTCQDCPMTP
Trigger: GGGTGTCATCGGACAATCCTGGCATGTACGGCAATGCAGACACCACATCAGTGGATACTCTAATAGATAAGAACAGCATTGAGGTGCCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS GCA 90 bp CCCTGCTCACAAACTCTTCCTCCTTTATCAGGACAGTCTGATTCTTaGAATAGTCTTTCCTGTGCAGTTGTTCCAGCTCTGGGTATCTTC +
Preference number: 5 (lower is better)
Translates to: PCSQTLPPLSGQSDS*NSLSCAVVPALGIF
Trigger: GAAGATACCCAGAGCTGGAACAACTGCACAGGAAAGACTATTGCAAGAATCAGACTGTCCTGATAAAGGAGGAAGAGTTTGTGAGCAGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS GCA 90 bp TGCTGTTCTTATCTATTAGAGTATCCACTGATGTGGTGTCTGCATTaGCGTACATGCCAGGATTGTCCGATGACACCCGCCACAAATGAT +
Preference number: 5 (lower is better)
Translates to: CCSYLLEYPLMWCLH*RTCQDCPMTPATND
Trigger: ATCATTTGTGGCGGGTGTCATCGGACAATCCTGGCATGTACGGCAATGCAGACACCACATCAGTGGATACTCTAATAGATAAGAACAGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS GCA 90 bp GCAGTTTTCACACTTTCAAACATGCAGATCCCAGAACTGATTCTATaGACTCTCCAGTGGGATTGTTCTGATTGGTTCCCTGCTCCTGTG +
Preference number: 5 (lower is better)
Translates to: AVFTLSNMQIPELIL*TLQWDCSDWFPAPV
Trigger: CACAGGAGCAGGGAACCAATCAGAACAATCCCACTGGAGAGTGCATAGAATCAGTTCTGGGATCTGCATGTTTGAAAGTGTGAAAACTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CCA 90 bp TCCTGGAAGGAAGAGCTTTTCTTGGCTGTCCTTGGTAAGGCTGATTaGTCCAGTGACACCTTCATATCCATACACCCACAATGTGACATT +
Preference number: 5 (lower is better)
Translates to: SWKEELFLAVLGKAD*SSDTFISIHPQCDI
Trigger: AATGTCACATTGTGGGTGTATGGATATGAAGGTGTCACTGGACCAATCAGCCTTACCAAGGACAGCCAAGAAAAGCTCTTCCTTCCAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CCA 90 bp TCTGAAATGCATCAATCTGTCCTCTTTGAAATCGTACAGGCATGTTaGATCTGTGCAACAGTCGAAGACCAGAGTCTCCCCTTTCCCCAT +
Preference number: 5 (lower is better)
Translates to: SEMHQSVLFEIVQAC*ICATVEDQSLPFPH
Trigger: ATGGGGAAAGGGGAGACTCTGGTCTTCGACTGTTGCACAGATCCAACATGCCTGTACGATTTCAAAGAGGACAGATTGATGCATTTCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS TCA 90 bp CCAGTGACACCTTCATATCCATACACCCACAATGTGACATTGGCCTaGGTACCTGTGTTTCCAGTCACCACTAAGACCTTCCATTTTTCT +
Preference number: 5 (lower is better)
Translates to: PVTPSYPYTHNVTLA*VPVFPVTTKTFHFS
Trigger: AGAAAAATGGAAGGTCTTAGTGGTGACTGGAAACACAGGTACTCAGGCCAATGTCACATTGTGGGTGTATGGATATGAAGGTGTCACTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS TCA 90 bp AAAAATGTCCACCTGTCCACGCTGAAACATAGCTTTCCTGCTCCCTaGTTGATGAAGTCTTCGTTTTCCAGAATCGCCATTGGTGCCAAT +
Preference number: 5 (lower is better)
Translates to: KNVHLSTLKHSFPAP*LMKSSFSRIAIGAN
Trigger: ATTGGCACCAATGGCGATTCTGGAAAACGAAGACTTCATCAATCAGGGAGCAGGAAAGCTATGTTTCAGCGTGGACAGGTGGACATTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS GCA 90 bp TATCTATTAGAGTATCCACTGATGTGGTGTCTGCATTGCCGTACATaGCAGGATTGTCCGATGACACCCGCCACAAATGATTTTCTCTCA +
Preference number: 5 (lower is better)
Translates to: YLLEYPLMWCLHCRT*QDCPMTPATNDFLS
Trigger: TGAGAGAAAATCATTTGTGGCGGGTGTCATCGGACAATCCTGGCATGTACGGCAATGCAGACACCACATCAGTGGATACTCTAATAGATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS GCA 90 bp TTGGACCAGGAGCCAGCTCTCCGAAATGTGAATATGGCACCTCAATaGTGTTCTTATCTATTAGAGTATCCACTGATGTGGTGTCTGCAT +
Preference number: 5 (lower is better)
Translates to: LDQEPALRNVNMAPQ*CSYLLEYPLMWCLH
Trigger: ATGCAGACACCACATCAGTGGATACTCTAATAGATAAGAACAGCATTGAGGTGCCATATTCACATTTCGGAGAGCTGGCTCCTGGTCCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS GCA 90 bp CTCTTCACGTTTTCCATTGTCACCCTCTGTAAGGTCCACTCTGGTTaGCCACCAGTTCCATCATGTCCTATTCTGATCTTGTATATCTCT +
Preference number: 5 (lower is better)
Translates to: LFTFSIVTLCKVHSG*PPVPSCPILILYIS
Trigger: AGAGATATACAAGATCAGAATAGGACATGATGGAACTGGTGGGCAACCAGAGTGGACCTTACAGAGGGTGACAATGGAAAACGTGAAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS TCA 90 bp ACATTCGTGCAGTTTTCACACTTTCAAACATGCAGATCCCAGAACTaGTTCTATGCACTCTCCAGTGGGATTGTTCTGATTGGTTCCCTG +
Preference number: 5 (lower is better)
Translates to: TFVQFSHFQTCRSQN*FYALSSGIVLIGSL
Trigger: CAGGGAACCAATCAGAACAATCCCACTGGAGAGTGCATAGAATCAGTTCTGGGATCTGCATGTTTGAAAGTGTGAAAACTGCACGAATGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CCA 90 bp AGTCTGATTCTTGCAATAGTCTTTCCTGTGCAGTTGTTCCAGCTCTaGGTATCTTCCCAGCTATATTTGGGGGTCCTTTGGTTTCAATCA +
Preference number: 5 (lower is better)
Translates to: SLILAIVFPVQLFQL*VSSQLYLGVLWFQS
Trigger: TGATTGAAACCAAAGGACCCCCAAATATAGCTGGGAAGATACCCAGAGCTGGAACAACTGCACAGGAAAGACTATTGCAAGAATCAGACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CCA 90 bp TGGATGCTGTACAATTTACTGGTAGCATATCTTGTTCTCTCCCACTaGACCCACTGCAAGTTTTGGTTGATTCCATCAAGTTGGCAACAG +
Preference number: 5 (lower is better)
Translates to: WMLYNLLVAYLVLSH*THCKFWLIPSSWQQ
Trigger: CTGTTGCCAACTTGATGGAATCAACCAAAACTTGCAGTGGGTCCAGTGGGAGAGAACAAGATATGCTACCAGTAAATTGTACAGCATCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CCA 90 bp TCTGAGCACTCCCATTTTCATTACACTCGTCCACACTATGAAGGCTaGATGCTGTACAATTTACTGGTAGCATATCTTGTTCTCTCCCAC +
Preference number: 5 (lower is better)
Translates to: SEHSHFHYTRPHYEG*MLYNLLVAYLVLSH
Trigger: GTGGGAGAGAACAAGATATGCTACCAGTAAATTGTACAGCATCCAGCCTTCATAGTGTGGACGAGTGTAATGAAAATGGGAGTGCTCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CCA 90 bp GACAGGTTTTGCCTGTCCATCTGGTTGAAGTCCAACAAACAGTCCTaGGCTCTTCAGAGATTCCAGACTTATAGATGCATTTTCCAGATT +
Preference number: 5 (lower is better)
Translates to: DRFCLSIWLKSNKQS*ALQRFQTYRCIFQI
Trigger: AATCTGGAAAATGCATCTATAAGTCTGGAATCTCTGAAGAGCCCAGGACTGTTTGTTGGACTTCAACCAGATGGACAGGCAAAACCTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CCA 90 bp CCTTCTTTCATTACAGGAAGCTCACAGACAATGTCTCCATCAGCCTaGTTCCGAGAAAGACACACATTTGCAACAAAATGTAGGGTCTTC +
Preference number: 5 (lower is better)
Translates to: PSFITGSSQTMSPSA*FRERHTFATKCRVF
Trigger: GAAGACCCTACATTTTGTTGCAAATGTGTGTCTTTCTCGGAACCAGGCTGATGGAGACATTGTCTGTGAGCTTCCTGTAATGAAAGAAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS TCA 90 bp ACAATTCCTCTTGTGGGCTCTTTCTCTTGGCCAGAGTCATCATTGTaGCTATTGCTCGATGCTTTACAAGGATATCCACTCTCACTATCT +
Preference number: 5 (lower is better)
Translates to: TIPLVGSFSWPESSL*LLLDALQGYPLSLS
Trigger: AGATAGTGAGAGTGGATATCCTTGTAAAGCATCGAGCAATAGTCACAATGATGACTCTGGCCAAGAGAAAGAGCCCACAAGAGGAATTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS TCA 90 bp GTAAGGTCCACTCTGGTTGCCCACCAGTTCCATCATGTCCTATTCTaGTCTTGTATATCTCTCCAATGCCTCTTAGTACAACCTGAAATT +
Preference number: 5 (lower is better)
Translates to: VRSTLVAHQFHHVLF*SCISLQCLLVQPEI
Trigger: AATTTCAGGTTGTACTAAGAGGCATTGGAGAGATATACAAGATCAGAATAGGACATGATGGAACTGGTGGGCAACCAGAGTGGACCTTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CCA 90 bp CTGTCATTTGAGTATTTTCTTCCTCTGTCAAACTGCCCTGCTGAGTaGTATCTACGATGTCTTCAGGCAACGAACATGCTTCAAGCTTTA +
Preference number: 5 (lower is better)
Translates to: LSFEYFLPLSNCPAE*YLRCLQATNMLQAL
Trigger: TAAAGCTTGAAGCATGTTCGTTGCCTGAAGACATCGTAGATACCACTCAGCAGGGCAGTTTGACAGAGGAAGAAAATACTCAAATGACAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CCA 90 bp AACACTCTCATCTTTAGTATAAATGACAGGTTTTGCCTGTCCATCTaGTTGAAGTCCAACAAACAGTCCTGGGCTCTTCAGAGATTCCAG +
Preference number: 5 (lower is better)
Translates to: NTLIFSINDRFCLSI*LKSNKQSWALQRFQ
Trigger: CTGGAATCTCTGAAGAGCCCAGGACTGTTTGTTGGACTTCAACCAGATGGACAGGCAAAACCTGTCATTTATACTAAAGATGAGAGTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CCA 90 bp GGTGCCAATGAGGTTGATGAATACATTAGATTCTGTTTCTGCTCCTaGCTTTGTCCCAGTGTGTATGTGAATTTTGTAAGTTACCACCGG +
Preference number: 5 (lower is better)
Translates to: GANEVDEYIRFCFCS*LCPSVYVNFVSYHR
Trigger: CCGGTGGTAACTTACAAAATTCACATACACACTGGGACAAAGCCAGGAGCAGAAACAGAATCTAATGTATTCATCAACCTCATTGGCACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS TCA 90 bp CTTATAGAAACTGATGCGTTTAGCCACTACAGGATGAGTGATATTTaGATGGCGAGGGGAAGGAACTTGACCTTCAGAAGTCAGATGAAT +
Preference number: 5 (lower is better)
Translates to: LIETDAFSHYRMSDI*MARGRNLTFRSQMN
Trigger: ATTCATCTGACTTCTGAAGGTCAAGTTCCTTCCCCTCGCCATTCAAATATCACTCATCCTGTAGTGGCTAAACGCATCAGTTTCTATAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS TCA 90 bp GCAGTTGACGGTAAAGCATTGTTGTGGCACATCTTTAAGACCTTCTaGCTTGTAATTTCAATAGCACCAGCATTTATGGCCTGTGACTTG +
Preference number: 5 (lower is better)
Translates to: AVDGKALLWHIFKTF*LVISIAPAFMACDL
Trigger: CAAGTCACAGGCCATAAATGCTGGTGCTATTGAAATTACAAGTCAGAAGGTCTTAAAGATGTGCCACAACAATGCTTTACCGTCAACTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS TCA 90 bp ATAATGTTCTCGAGAAACCATCCATTACCTGGACCTGTCCCATCATaGCTAATCAGAACTTTCTTCAGGTTTCCAAGAGACACAGCCTTA +
Preference number: 5 (lower is better)
Translates to: IMFSRNHPLPGPVPS*LIRTFFRFPRDTAL
Trigger: TAAGGCTGTGTCTCTTGGAAACCTGAAGAAAGTTCTGATTAGTCATGATGGGACAGGTCCAGGTAATGGATGGTTTCTCGAGAACATTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS GCA 90 bp GCCCATTCCATTACAGTACCCATCCTTAATCCTCAGATACATTCGTaGAGTTTTCACACTTTCAAACATGCAGATCCCAGAACTGATTCT +
Preference number: 5 (lower is better)
Translates to: AHSITVPILNPQIHS*SFHTFKHADPRTDS
Trigger: AGAATCAGTTCTGGGATCTGCATGTTTGAAAGTGTGAAAACTGCACGAATGTATCTGAGGATTAAGGATGGGTACTGTAATGGAATGGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS GCA 90 bp TCCATTTTTCTTCTAACAGAAGTGTCTCAATCCTGCACAGATGCTTaGTTTCTTTTTCTGATGATGATGGTGAGGAACATCTGGCCTTGG +
Preference number: 5 (lower is better)
Translates to: SIFLLTEVSQSCTDA*FLFLMMMVRNIWPW
Trigger: CCAAGGCCAGATGTTCCTCACCATCATCATCAGAAAAAGAAAGCAAGCATCTGTGCAGGATTGAGACACTTCTGTTAGAAGAAAAATGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CCA 90 bp AGCAGAAACAAAGGCTTGAGTAACAGATGTACACAGTCTTTCCGATaGATAATTACCCTTCTCCTCTGTGTGATGGTTGGGTATTTTCTC +
Preference number: 5 (lower is better)
Translates to: SRNKGLSNRCTQSFR*IITLLLCVMVGYFL
Trigger: GAGAAAATACCCAACCATCACACAGAGGAGAAGGGTAATTATCCATCGGAAAGACTGTGTACATCTGTTACTCAAGCCTTTGTTTCTGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS GCA 90 bp CCACTAAGACCTTCCATTTTTCTTCTAACAGAAGTGTCTCAATCCTaGACAGATGCTTGCTTTCTTTTTCTGATGATGATGGTGAGGAAC +
Preference number: 5 (lower is better)
Translates to: PLRPSIFLLTEVSQS*TDACFLFLMMMVRN
Trigger: GTTCCTCACCATCATCATCAGAAAAAGAAAGCAAGCATCTGTGCAGGATTGAGACACTTCTGTTAGAAGAAAAATGGAAGGTCTTAGTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS GCA 90 bp GCCATTGGTGCCAATGAGGTTGATGAATACATTAGATTCTGTTTCTaGTCCTGGCTTTGTCCCAGTGTGTATGTGAATTTTGTAAGTTAC +
Preference number: 5 (lower is better)
Translates to: AIGANEVDEYIRFCF*SWLCPSVYVNFVSY
Trigger: GTAACTTACAAAATTCACATACACACTGGGACAAAGCCAGGAGCAGAAACAGAATCTAATGTATTCATCAACCTCATTGGCACCAATGGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CCA 90 bp TCTGAAAAGCAATCATATGTTTTCTCCGAGATCAGGGAATCAGTCTaGGGTCTTAGGTCTGAAGGCATATGTGTGCTCATCTTTCTTTTT +
Preference number: 5 (lower is better)
Translates to: SEKQSYVFSEIRESV*GLRSEGICVLIFLF
Trigger: AAAAAGAAAGATGAGCACACATATGCCTTCAGACCTAAGACCCCAGACTGATTCCCTGATCTCGGAGAAAACATATGATTGCTTTTCAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CCA 90 bp ACAGTCTTTCCGATGGATAATTACCCTTCTCCTCTGTGTGATGGTTaGGTATTTTCTCTTTGGGACAAGTTTTATTCTGTGCATCTGGAA +
Preference number: 5 (lower is better)
Translates to: TVFPMDNYPSPLCDG*VFSLWDKFYSVHLE
Trigger: TTCCAGATGCACAGAATAAAACTTGTCCCAAAGAGAAAATACCCAACCATCACACAGAGGAGAAGGGTAATTATCCATCGGAAAGACTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CCA 90 bp GACTCAGTTTTTGCTTGTTTCAACTGTCCCGTATACACATCAACATaGTATCTCACCAATGGAAAAACAGGCTCTCCTTCTTTCATTACA +
Preference number: 5 (lower is better)
Translates to: DSVFACFNCPVYTST*YLTNGKTGSPSFIT
Trigger: TGTAATGAAAGAAGGAGAGCCTGTTTTTCCATTGGTGAGATACCATGTTGATGTGTATACGGGACAGTTGAAACAAGCAAAAACTGAGTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS GCA 90 bp AAATGGTGGTTTGATAATCTCTGCTTTGCCATAAAGCTTTTCTATTaGTCTTTTAACAATTCCTCTTGTGGGCTCTTTCTCTTGGCCAGA +
Preference number: 5 (lower is better)
Translates to: KWWFDNLCFAIKLFY*SFNNSSCGLFLLAR
Trigger: TCTGGCCAAGAGAAAGAGCCCACAAGAGGAATTGTTAAAAGAGCAATAGAAAAGCTTTATGGCAAAGCAGAGATTATCAAACCACCATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CCA 90 bp TTCTCTTTAGGTTTAGTACCAAAAGCCAAGCCAGAAGGAGATTTGTaGATGAATTATCTATTACAGAAGGGAAGACAACCTCTGCTAATG +
Preference number: 5 (lower is better)
Translates to: FSLGLVPKAKPEGDL*MNYLLQKGRQPLLM
Trigger: CATTAGCAGAGGTTGTCTTCCCTTCTGTAATAGATAATTCATCCACAAATCTCCTTCTGGCTTGGCTTTTGGTACTAAACCTAAAGAGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CCA 90 bp GGCTTAGTGAAACAGAATTCCTATTCTCCACCACTAGCAATGACGTaGACAAAGGATCGGAAAAGCTTTTCTTTAAATATAGTTGGAATT +
Preference number: 5 (lower is better)
Translates to: GLVKQNSYSPPLAMT*TKDRKSFSLNIVGI
Trigger: AATTCCAACTATATTTAAAGAAAAGCTTTTCCGATCCTTTGTCCACGTCATTGCTAGTGGTGGAGAATAGGAATTCTGTTTCACTAAGCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS TCA 90 bp CTTTCACAGAGTTTCGAGTCACTATGGAGAAGTATTTTATCTTCTTaGCCAATCTCTTGTTTTCTGAGTCTTTCTGTGCTTACAATCTTT +
Preference number: 5 (lower is better)
Translates to: LSQSFESLWRSILSS*PISCFLSLSVLTIF
Trigger: AAAGATTGTAAGCACAGAAAGACTCAGAAAACAAGAGATTGGTCAAGAAGATAAAATACTTCTCCATAGTGACTCGAAACTCTGTGAAAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CCA 90 bp ATAAGGACAAACTTGAGATTTGTGTATAGACCCATGGAAAAATGGTaGTTTGATAATCTCTGCTTTGCCATAAAGCTTTTCTATTGCTCT +
Preference number: 5 (lower is better)
Translates to: IRTNLRFVYRPMEKW*FDNLCFAIKLFYCS
Trigger: AGAGCAATAGAAAAGCTTTATGGCAAAGCAGAGATTATCAAACCACCATTTTTCCATGGGTCTATACACAAATCTCAAGTTTGTCCTTAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS GCA 72 bp TTATGGAGCGACTACTCAGCCAGGGCCGAGGGCGCCTaGGGGCCTTGTCCAGGTCAACTGGCAGCACCTTCT +
Preference number: 6 (lower is better)
Translates to: LWSDYSARAEGA*GPCPGQLAAPS
Trigger: AGAAGGTGCTGCCAGTTGACCTGGACAAGGCCCGCAGGCGCCCTCGGCCCTGGCTGAGTAGTCGCTCCATAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS CCA 72 bp TGGCAGTTGCAGGACAGAGCTGCACATGCGTGCTTATaGAGCGACTACTCAGCCAGGGCCGAGGGCGCCTGC +
Preference number: 6 (lower is better)
Translates to: WQLQDRAAHACL*SDYSARAEGAC
Trigger: GCAGGCGCCCTCGGCCCTGGCTGAGTAGTCGCTCCATAAGCACGCATGTGCAGCTCTGTCCTGCAACTGCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS CAA 72 bp CGACTACTCAGCCAGGGCCGAGGGCGCCTGCGGGCCTaGTCCAGGTCAACTGGCAGCACCTTCTTATTGTGG +
Preference number: 6 (lower is better)
Translates to: RLLSQGRGRLRA*SRSTGSTFLLW
Trigger: CCACAATAAGAAGGTGCTGCCAGTTGACCTGGACAAGGCCCGCAGGCGCCCTCGGCCCTGGCTGAGTAGTCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS CAA 90 bp CTTATGGAGCGACTACTCAGCCAGGGCCGAGGGCGCCTGCGGGCCTaGTCCAGGTCAACTGGCAGCACCTTCTTATTGTGGGAGCACACA +
Preference number: 6 (lower is better)
Translates to: LMERLLSQGRGRLRA*SRSTGSTFLLWEHT
Trigger: TGTGTGCTCCCACAATAAGAAGGTGCTGCCAGTTGACCTGGACAAGGCCCGCAGGCGCCCTCGGCCCTGGCTGAGTAGTCGCTCCATAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS GCA 72 bp GACCACGAGCCTCCTTGGGGCACGGAGCATGCCAGGTaGCATGGTGGACATATTGGCAGTTGCAGGACAGAG +
Preference number: 6 (lower is better)
Translates to: DHEPPWGTEHAR*HGGHIGSCRTE
Trigger: CTCTGTCCTGCAACTGCCAATATGTCCACCATGGCACCTGGCATGCTCCGTGCCCCAAGGAGGCTCGTGGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS GCA 72 bp TCCGGAAGACCACGAGCCTCCTTGGGGCACGGAGCATaGCAGGTGCCATGGTGGACATATTGGCAGTTGCAG +
Preference number: 6 (lower is better)
Translates to: SGRPRASLGHGA*QVPWWTYWQLQ
Trigger: CTGCAACTGCCAATATGTCCACCATGGCACCTGGCATGCTCCGTGCCCCAAGGAGGCTCGTGGTCTTCCGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS CCA 72 bp GGGCCGAGGGCGCCTGCGGGCCTTGTCCAGGTCAACTaGCAGCACCTTCTTATTGTGGGAGCACACATAAGA +
Preference number: 6 (lower is better)
Translates to: GPRAPAGLVQVN*QHLLIVGAHIR
Trigger: TCTTATGTGTGCTCCCACAATAAGAAGGTGCTGCCAGTTGACCTGGACAAGGCCCGCAGGCGCCCTCGGCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS CCA 72 bp GCCTCCTTGGGGCACGGAGCATGCCAGGTGCCATGGTaGACATATTGGCAGTTGCAGGACAGAGCTGCACAT +
Preference number: 6 (lower is better)
Translates to: ASLGHGACQVPW*TYWQLQDRAAH
Trigger: ATGTGCAGCTCTGTCCTGCAACTGCCAATATGTCCACCATGGCACCTGGCATGCTCCGTGCCCCAAGGAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS CAA 72 bp GGGGCACGGAGCATGCCAGGTGCCATGGTGGACATATaGGCAGTTGCAGGACAGAGCTGCACATGCGTGCTT +
Preference number: 6 (lower is better)
Translates to: GARSMPGAMVDI*AVAGQSCTCVL
Trigger: AAGCACGCATGTGCAGCTCTGTCCTGCAACTGCCAATATGTCCACCATGGCACCTGGCATGCTCCGTGCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS CAA 90 bp AGCCTCCTTGGGGCACGGAGCATGCCAGGTGCCATGGTGGACATATaGGCAGTTGCAGGACAGAGCTGCACATGCGTGCTTATGGAGCGA +
Preference number: 6 (lower is better)
Translates to: SLLGARSMPGAMVDI*AVAGQSCTCVLMER
Trigger: TCGCTCCATAAGCACGCATGTGCAGCTCTGTCCTGCAACTGCCAATATGTCCACCATGGCACCTGGCATGCTCCGTGCCCCAAGGAGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS CAA 90 bp TTGGGGCACGGAGCATGCCAGGTGCCATGGTGGACATATTGGCAGTaGCAGGACAGAGCTGCACATGCGTGCTTATGGAGCGACTACTCA +
Preference number: 6 (lower is better)
Translates to: LGHGACQVPWWTYWQ*QDRAAHACLWSDYS
Trigger: TGAGTAGTCGCTCCATAAGCACGCATGTGCAGCTCTGTCCTGCAACTGCCAATATGTCCACCATGGCACCTGGCATGCTCCGTGCCCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS GCA 72 bp GTGGACATATTGGCAGTTGCAGGACAGAGCTGCACATaGGTGCTTATGGAGCGACTACTCAGCCAGGGCCGA +
Preference number: 6 (lower is better)
Translates to: VDILAVAGQSCT*VLMERLLSQGR
Trigger: TCGGCCCTGGCTGAGTAGTCGCTCCATAAGCACGCATGTGCAGCTCTGTCCTGCAACTGCCAATATGTCCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS GCA 72 bp GAGCATGCCAGGTGCCATGGTGGACATATTGGCAGTTaGAGGACAGAGCTGCACATGCGTGCTTATGGAGCG +
Preference number: 6 (lower is better)
Translates to: EHARCHGGHIGS*RTELHMRAYGA
Trigger: CGCTCCATAAGCACGCATGTGCAGCTCTGTCCTGCAACTGCCAATATGTCCACCATGGCACCTGGCATGCTC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS CCA 72 bp GTCTGTCTGCTCCCCAGCAGCATCGACCGTGCCATCTaGATGAAGACGGACAAACCCTCCACTGAGCTTGTT +
Preference number: 6 (lower is better)
Translates to: VCLLPSSIDRAI*MKTDKPSTELV
Trigger: AACAAGCTCAGTGGAGGGTTTGTCCGTCTTCATCCAGATGGCACGGTCGATGCTGCTGGGGAGCAGACAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CAA 72 bp GGAGCATGCCAGGTGCCATGGTGGACATATTGGCAGTaGCAGGACAGAGCTGCACATGCGTGCTTATGGAGC +
Preference number: 6 (lower is better)
Translates to: GACQVPWWTYWQ*QDRAAHACLWS
Trigger: GCTCCATAAGCACGCATGTGCAGCTCTGTCCTGCAACTGCCAATATGTCCACCATGGCACCTGGCATGCTCC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS CAA 72 bp GAGGAACATCTGGCCTTGGATTCTGGTGGTGTGGTCTaGTCCTCCCCTTGGCTGGGTGTTGCAGACATTCCC +
Preference number: 6 (lower is better)
Translates to: EEHLALDSGGVV*SSPWLGVADIP
Trigger: GGGAATGTCTGCAACACCCAGCCAAGGGGAGGACAAGACCACACCACCAGAATCCAAGGCCAGATGTTCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS GCA 72 bp GCCATGGTGGACATATTGGCAGTTGCAGGACAGAGCTaGACATGCGTGCTTATGGAGCGACTACTCAGCCAG +
Preference number: 6 (lower is better)
Translates to: AMVDILAVAGQS*TCVLMERLLSQ
Trigger: CTGGCTGAGTAGTCGCTCCATAAGCACGCATGTGCAGCTCTGTCCTGCAACTGCCAATATGTCCACCATGGC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS CAA 72 bp TCCAGCAGAGCGTCAAAAGTCTTAAAGGAACGAGGGTaGACCACCACCCGAACGCCGCCAAACTGTGGGTCT +
Preference number: 6 (lower is better)
Translates to: SSRASKVLKERG*TTTRTPPNCGS
Trigger: AGACCCACAGTTTGGCGGCGTTCGGGTGGTGGTCAACCCTCGTTCCTTTAAGACTTTTGACGCTCTGCTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS CAA 72 bp GGCCTTGGATTCTGGTGGTGTGGTCTTGTCCTCCCCTaGGCTGGGTGTTGCAGACATTCCCATTGGGTTTTC +
Preference number: 6 (lower is better)
Translates to: GLGFWWCGLVLP*AGCCRHSHWVF
Trigger: GAAAACCCAATGGGAATGTCTGCAACACCCAGCCAAGGGGAGGACAAGACCACACCACCAGAATCCAAGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS TCA 72 bp ACCCCATCTGTAAGGAAACAGGCCCCTGTGGAGCGCTaGCTCACAGTGCAGCTATTGCTAGTAAGAAGGCCA +
Preference number: 6 (lower is better)
Translates to: TPSVRKQAPVER*LTVQLLLVRRP
Trigger: TGGCCTTCTTACTAGCAATAGCTGCACTGTGAGTCAGCGCTCCACAGGGGCCTGTTTCCTTACAGATGGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS GCA 72 bp TCCAGCTGCCACCACAGCTCCAGAGCTGAGTATCACTaGCTGGAGACTAGGAACTTTTCTTCCATCTGTGGC +
Preference number: 6 (lower is better)
Translates to: SSCHHSSRAEYH*LETRNFSSICG
Trigger: GCCACAGATGGAAGAAAAGTTCCTAGTCTCCAGGCAGTGATACTCAGCTCTGGAGCTGTGGTGGCAGCTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS CCA 72 bp ACGAGGGTTGACCACCACCCGAACGCCGCCAAACTGTaGGTCTCCACTCTTATAGAAACTGATGCGTTTAGC +
Preference number: 6 (lower is better)
Translates to: TRVDHHPNAAKL*VSTLIETDAFS
Trigger: GCTAAACGCATCAGTTTCTATAAGAGTGGAGACCCACAGTTTGGCGGCGTTCGGGTGGTGGTCAACCCTCGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS CCA 72 bp CAGGAAGCAGCACTGACTCAAGAAGCACACAACGGTTaGGCTGATAAATCACCTGCAGCTCAGAGTGGCCTC +
Preference number: 6 (lower is better)
Translates to: QEAALTQEAHNG*ADKSPAAQSGL
Trigger: GAGGCCACTCTGAGCTGCAGGTGATTTATCAGCCCAACCGTTGTGTGCTTCTTGAGTCAGTGCTGCTTCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CCA 72 bp CTGATTCTATGCACTCTCCAGTGGGATTGTTCTGATTaGTTCCCTGCTCCTGTGCAGGTCCCATTGGGCTGC +
Preference number: 6 (lower is better)
Translates to: LILCTLQWDCSD*FPAPVQVPLGC
Trigger: GCAGCCCAATGGGACCTGCACAGGAGCAGGGAACCAATCAGAACAATCCCACTGGAGAGTGCATAGAATCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CCA 72 bp GCCTTGGATTCTGGTGGTGTGGTCTTGTCCTCCCCTTaGCTGGGTGTTGCAGACATTCCCATTGGGTTTTCT +
Preference number: 6 (lower is better)
Translates to: ALDSGGVVLSSP*LGVADIPIGFS
Trigger: AGAAAACCCAATGGGAATGTCTGCAACACCCAGCCAAGGGGAGGACAAGACCACACCACCAGAATCCAAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CAA 90 bp GGAACATCTGGCCTTGGATTCTGGTGGTGTGGTCTTGTCCTCCCCTaGGCTGGGTGTTGCAGACATTCCCATTGGGTTTTCTCTGCCAAA +
Preference number: 6 (lower is better)
Translates to: GTSGLGFWWCGLVLP*AGCCRHSHWVFSAK
Trigger: TTTGGCAGAGAAAACCCAATGGGAATGTCTGCAACACCCAGCCAAGGGGAGGACAAGACCACACCACCAGAATCCAAGGCCAGATGTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CAA 90 bp GATGATGGTGAGGAACATCTGGCCTTGGATTCTGGTGGTGTGGTCTaGTCCTCCCCTTGGCTGGGTGTTGCAGACATTCCCATTGGGTTT +
Preference number: 6 (lower is better)
Translates to: DDGEEHLALDSGGVV*SSPWLGVADIPIGF
Trigger: AAACCCAATGGGAATGTCTGCAACACCCAGCCAAGGGGAGGACAAGACCACACCACCAGAATCCAAGGCCAGATGTTCCTCACCATCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS TCA 72 bp GGTGTCTGCATTGCCGTACATGCCAGGATTGTCCGATaGCACCCGCCACAAATGATTTTCTCTCAGGAGCCA +
Preference number: 6 (lower is better)
Translates to: GVCIAVHARIVR*HPPQMIFSQEP
Trigger: TGGCTCCTGAGAGAAAATCATTTGTGGCGGGTGTCATCGGACAATCCTGGCATGTACGGCAATGCAGACACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS GCA 72 bp TGGTGGTGTGGTCTTGTCCTCCCCTTGGCTGGGTGTTaGAGACATTCCCATTGGGTTTTCTCTGCCAAATTG +
Preference number: 6 (lower is better)
Translates to: WWCGLVLPLAGC*RHSHWVFSAKL
Trigger: CAATTTGGCAGAGAAAACCCAATGGGAATGTCTGCAACACCCAGCCAAGGGGAGGACAAGACCACACCACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CCA 72 bp GCTGCCACCACAGCTCCAGAGCTGAGTATCACTGCCTaGAGACTAGGAACTTTTCTTCCATCTGTGGCATAC +
Preference number: 6 (lower is better)
Translates to: AATTAPELSITA*RLGTFLPSVAY
Trigger: GTATGCCACAGATGGAAGAAAAGTTCCTAGTCTCCAGGCAGTGATACTCAGCTCTGGAGCTGTGGTGGCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS CAA 90 bp GATAAACTGTCCAGCAGAGCGTCAAAAGTCTTAAAGGAACGAGGGTaGACCACCACCCGAACGCCGCCAAACTGTGGGTCTCCACTCTTA +
Preference number: 6 (lower is better)
Translates to: DKLSSRASKVLKERG*TTTRTPPNCGSPLL
Trigger: TAAGAGTGGAGACCCACAGTTTGGCGGCGTTCGGGTGGTGGTCAACCCTCGTTCCTTTAAGACTTTTGACGCTCTGCTGGACAGTTTATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS TCA 72 bp ACGATCAACAGTCAGGGTGTGCCCAGGAAGCAGCACTaGCTCAAGAAGCACACAACGGTTGGGCTGATAAAT +
Preference number: 6 (lower is better)
Translates to: TINSQGVPRKQH*LKKHTTVGLIN
Trigger: ATTTATCAGCCCAACCGTTGTGTGCTTCTTGAGTCAGTGCTGCTTCCTGGGCACACCCTGACTGTTGATCGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS TCA 72 bp AGAACTGATTCTATGCACTCTCCAGTGGGATTGTTCTaGTTGGTTCCCTGCTCCTGTGCAGGTCCCATTGGG +
Preference number: 6 (lower is better)
Translates to: RTDSMHSPVGLF*LVPCSCAGPIG
Trigger: CCCAATGGGACCTGCACAGGAGCAGGGAACCAATCAGAACAATCCCACTGGAGAGTGCATAGAATCAGTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS TCA 72 bp GTCTTGCCATCTTCTTGGTATTCATCTAGCCATCTGTaGCACGGAAACAGCACCTCTGGACAGCTCCCATCC +
Preference number: 6 (lower is better)
Translates to: VLPSSWYSSSHL*HGNSTSGQLPS
Trigger: GGATGGGAGCTGTCCAGAGGTGCTGTTTCCGTGTCACAGATGGCTAGATGAATACCAAGAAGATGGCAAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS GCA 72 bp GAGTATCCACTGATGTGGTGTCTGCATTGCCGTACATaGCAGGATTGTCCGATGACACCCGCCACAAATGAT +
Preference number: 6 (lower is better)
Translates to: EYPLMWCLHCRT*QDCPMTPATND
Trigger: ATCATTTGTGGCGGGTGTCATCGGACAATCCTGGCATGTACGGCAATGCAGACACCACATCAGTGGATACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS GCA 72 bp CAGTACCAGTACTGGGATTTGTCACTGGCCTCACAGTaGAACAGCGCCTTCTGTAGGTTTCCTAGAGACACT +
Preference number: 6 (lower is better)
Translates to: QYQYWDLSLASQ*NSAFCRFPRDT
Trigger: AGTGTCTCTAGGAAACCTACAGAAGGCGCTGTTGCACTGTGAGGCCAGTGACAAATCCCAGTACTGGTACTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CCA 72 bp CTTTTTCTGATGATGATGGTGAGGAACATCTGGCCTTaGATTCTGGTGGTGTGGTCTTGTCCTCCCCTTGGC +
Preference number: 6 (lower is better)
Translates to: LFLMMMVRNIWP*ILVVWSCPPLG
Trigger: GCCAAGGGGAGGACAAGACCACACCACCAGAATCCAAGGCCAGATGTTCCTCACCATCATCATCAGAAAAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CCA 72 bp GGATCTTTGACGATGATCTTCTCACAGTACCAGTACTaGGATTTGTCACTGGCCTCACAGTGCAACAGCGCC +
Preference number: 6 (lower is better)
Translates to: GSLTMIFSQYQY*DLSLASQCNSA
Trigger: GGCGCTGTTGCACTGTGAGGCCAGTGACAAATCCCAGTACTGGTACTGTGAGAAGATCATCGTCAAAGATCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CAA 90 bp ACTGCCTGGAGACTAGGAACTTTTCTTCCATCTGTGGCATACAGCTaGGCCACAGGACACTGCATAACCTGTGTCAGGTACTGCAGAAAG +
Preference number: 6 (lower is better)
Translates to: TAWRLGTFLPSVAYS*ATGHCITCVRYCRK
Trigger: CTTTCTGCAGTACCTGACACAGGTTATGCAGTGTCCTGTGGCCAAGCTGTATGCCACAGATGGAAGAAAAGTTCCTAGTCTCCAGGCAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS CAA 90 bp CAAGTTCTGAAGTGCTTGATAGTGGCTGTGCCTGATACTGCACTGTaGTCTGTGCCTTCTTCCACGACTGAGTTCTCTGGTGCAGTTGAC +
Preference number: 6 (lower is better)
Translates to: QVLKCLIVAVPDTAL*SVPSSTTEFSGAVD
Trigger: GTCAACTGCACCAGAGAACTCAGTCGTGGAAGAAGGCACAGACAACAGTGCAGTATCAGGCACAGCCACTATCAAGCACTTCAGAACTTG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CAA 90 bp CCTGGATCTTTGACGATGATCTTCTCACAGTACCAGTACTGGGATTaGTCACTGGCCTCACAGTGCAACAGCGCCTTCTGTAGGTTTCCT +
Preference number: 6 (lower is better)
Translates to: PGSLTMIFSQYQYWD*SLASQCNSAFCRFP
Trigger: AGGAAACCTACAGAAGGCGCTGTTGCACTGTGAGGCCAGTGACAAATCCCAGTACTGGTACTGTGAGAAGATCATCGTCAAAGATCCAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS TCA 72 bp GAAGGGAATCCACCTCTCACAGGTGAAGATGGATTCTaGGGAGCTGCCTGGATCTTTGACGATGATCTTCTC +
Preference number: 6 (lower is better)
Translates to: EGNPPLTGEDGF*GAAWIFDDDLL
Trigger: GAGAAGATCATCGTCAAAGATCCAGGCAGCTCCTCAGAATCCATCTTCACCTGTGAGAGGTGGATTCCCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS GCA 72 bp TATCTATTAGAGTATCCACTGATGTGGTGTCTGCATTaGCGTACATGCCAGGATTGTCCGATGACACCCGCC +
Preference number: 6 (lower is better)
Translates to: YLLEYPLMWCLH*RTCQDCPMTPA
Trigger: GGCGGGTGTCATCGGACAATCCTGGCATGTACGGCAATGCAGACACCACATCAGTGGATACTCTAATAGATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CCA 72 bp ATGCAGATCCCAGAACTGATTCTATGCACTCTCCAGTaGGATTGTTCTGATTGGTTCCCTGCTCCTGTGCAG +
Preference number: 6 (lower is better)
Translates to: MQIPELILCTLQ*DCSDWFPAPVQ
Trigger: CTGCACAGGAGCAGGGAACCAATCAGAACAATCCCACTGGAGAGTGCATAGAATCAGTTCTGGGATCTGCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CAA 72 bp AAGTGCTTGATAGTGGCTGTGCCTGATACTGCACTGTaGTCTGTGCCTTCTTCCACGACTGAGTTCTCTGGT +
Preference number: 6 (lower is better)
Translates to: KCLIVAVPDTAL*SVPSSTTEFSG
Trigger: ACCAGAGAACTCAGTCGTGGAAGAAGGCACAGACAACAGTGCAGTATCAGGCACAGCCACTATCAAGCACTT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CAA 72 bp TCTTTTTCTGATGATGATGGTGAGGAACATCTGGCCTaGGATTCTGGTGGTGTGGTCTTGTCCTCCCCTTGG +
Preference number: 6 (lower is better)
Translates to: SFSDDDGEEHLA*DSGGVVLSSPW
Trigger: CCAAGGGGAGGACAAGACCACACCACCAGAATCCAAGGCCAGATGTTCCTCACCATCATCATCAGAAAAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CAA 72 bp TTGACGATGATCTTCTCACAGTACCAGTACTGGGATTaGTCACTGGCCTCACAGTGCAACAGCGCCTTCTGT +
Preference number: 6 (lower is better)
Translates to: LTMIFSQYQYWD*SLASQCNSAFC
Trigger: ACAGAAGGCGCTGTTGCACTGTGAGGCCAGTGACAAATCCCAGTACTGGTACTGTGAGAAGATCATCGTCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CAA 90 bp GGGGTTGAGTCATTTCCTCTATTTCTGAAGAGGACAGTTCAGCCATaGTTGGACCAGGAGCCAGCTCTCCGAAATGTGAATATGGCACCT +
Preference number: 6 (lower is better)
Translates to: GVESFPLFLKRTVQP*LDQEPALRNVNMAP
Trigger: AGGTGCCATATTCACATTTCGGAGAGCTGGCTCCTGGTCCAACAATGGCTGAACTGTCCTCTTCAGAAATAGAGGAAATGACTCAACCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CAA 90 bp CACCTCTCACAGGTGAAGATGGATTCTGAGGAGCTGCCTGGATCTTaGACGATGATCTTCTCACAGTACCAGTACTGGGATTTGTCACTG +
Preference number: 6 (lower is better)
Translates to: HLSQVKMDSEELPGS*TMIFSQYQYWDLSL
Trigger: CAGTGACAAATCCCAGTACTGGTACTGTGAGAAGATCATCGTCAAAGATCCAGGCAGCTCCTCAGAATCCATCTTCACCTGTGAGAGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CCA 72 bp GGCAGGAAGCAAGTACTTTTGTATGTCGTAATTTCCTaGTTTAAATGGCTCCCTTCCAGCTGCCACCACAGC +
Preference number: 6 (lower is better)
Translates to: GRKQVLLYVVIS*FKWLPSSCHHS
Trigger: GCTGTGGTGGCAGCTGGAAGGGAGCCATTTAAACCAGGAAATTACGACATACAAAAGTACTTGCTTCCTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS CCA 72 bp TGCTTTCTTTTTCTGATGATGATGGTGAGGAACATCTaGCCTTGGATTCTGGTGGTGTGGTCTTGTCCTCCC +
Preference number: 6 (lower is better)
Translates to: CFLFLMMMVRNI*PWILVVWSCPP
Trigger: GGGAGGACAAGACCACACCACCAGAATCCAAGGCCAGATGTTCCTCACCATCATCATCAGAAAAAGAAAGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CCA 72 bp CATCAATCTGTCCTCTTTGAAATCGTACAGGCATGTTaGATCTGTGCAACAGTCGAAGACCAGAGTCTCCCC +
Preference number: 6 (lower is better)
Translates to: HQSVLFEIVQAC*ICATVEDQSLP
Trigger: GGGGAGACTCTGGTCTTCGACTGTTGCACAGATCCAACATGCCTGTACGATTTCAAAGAGGACAGATTGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CCA 72 bp AGTGTGTATGTGAATTTTGTAAGTTACCACCGGAAGTaGCCCTCTGTGTGCCCTTACAGTGGGCACCTCTTT +
Preference number: 6 (lower is better)
Translates to: SVYVNFVSYHRK*PSVCPYSGHLF
Trigger: AAAGAGGTGCCCACTGTAAGGGCACACAGAGGGCCACTTCCGGTGGTAACTTACAAAATTCACATACACACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CAA 72 bp AGACTAGGAACTTTTCTTCCATCTGTGGCATACAGCTaGGCCACAGGACACTGCATAACCTGTGTCAGGTAC +
Preference number: 6 (lower is better)
Translates to: RLGTFLPSVAYS*ATGHCITCVRY
Trigger: GTACCTGACACAGGTTATGCAGTGTCCTGTGGCCAAGCTGTATGCCACAGATGGAAGAAAAGTTCCTAGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS CAA 72 bp TTATCTATTAGAGTATCCACTGATGTGGTGTCTGCATaGCCGTACATGCCAGGATTGTCCGATGACACCCGC +
Preference number: 6 (lower is better)
Translates to: LSIRVSTDVVSA*PYMPGLSDDTR
Trigger: GCGGGTGTCATCGGACAATCCTGGCATGTACGGCAATGCAGACACCACATCAGTGGATACTCTAATAGATAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CAA 72 bp CAAAATGTAGGGTCTTCTTGCTCTTCACGTTTTCCATaGTCACCCTCTGTAAGGTCCACTCTGGTTGCCCAC +
Preference number: 6 (lower is better)
Translates to: QNVGSSCSSRFP*SPSVRSTLVAH
Trigger: GTGGGCAACCAGAGTGGACCTTACAGAGGGTGACAATGGAAAACGTGAAGAGCAAGAAGACCCTACATTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CAA 72 bp CAGGTGAAGATGGATTCTGAGGAGCTGCCTGGATCTTaGACGATGATCTTCTCACAGTACCAGTACTGGGAT +
Preference number: 6 (lower is better)
Translates to: QVKMDSEELPGS*TMIFSQYQYWD
Trigger: ATCCCAGTACTGGTACTGTGAGAAGATCATCGTCAAAGATCCAGGCAGCTCCTCAGAATCCATCTTCACCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CAA 90 bp CACTGTTGTCTGTGCCTTCTTCCACGACTGAGTTCTCTGGTGCAGTaGACGGTAAAGCATTGTTGTGGCACATCTTTAAGACCTTCTGAC +
Preference number: 6 (lower is better)
Translates to: HCCLCLLPRLSSLVQ*TVKHCCGTSLRPSD
Trigger: GTCAGAAGGTCTTAAAGATGTGCCACAACAATGCTTTACCGTCAACTGCACCAGAGAACTCAGTCGTGGAAGAAGGCACAGACAACAGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CAA 90 bp GTAGCATATCTTGTTCTCTCCCACTGGACCCACTGCAAGTTTTGGTaGATTCCATCAAGTTGGCAACAGCAGCCTTCAAGTCATCAGCTT +
Preference number: 6 (lower is better)
Translates to: VAYLVLSHWTHCKFW*IPSSWQQQPSSHQL
Trigger: AAGCTGATGACTTGAAGGCTGCTGTTGCCAACTTGATGGAATCAACCAAAACTTGCAGTGGGTCCAGTGGGAGAGAACAAGATATGCTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CAA 90 bp ACTGGTAGCATATCTTGTTCTCTCCCACTGGACCCACTGCAAGTTTaGGTTGATTCCATCAAGTTGGCAACAGCAGCCTTCAAGTCATCA +
Preference number: 6 (lower is better)
Translates to: TGSISCSLPLDPLQV*VDSIKLATAAFKSS
Trigger: TGATGACTTGAAGGCTGCTGTTGCCAACTTGATGGAATCAACCAAAACTTGCAGTGGGTCCAGTGGGAGAGAACAAGATATGCTACCAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CAA 90 bp GTTGAGTCATTTCCTCTATTTCTGAAGAGGACAGTTCAGCCATTGTaGGACCAGGAGCCAGCTCTCCGAAATGTGAATATGGCACCTCAA +
Preference number: 6 (lower is better)
Translates to: VESFPLFLKRTVQPL*DQEPALRNVNMAPQ
Trigger: TTGAGGTGCCATATTCACATTTCGGAGAGCTGGCTCCTGGTCCAACAATGGCTGAACTGTCCTCTTCAGAAATAGAGGAAATGACTCAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CAA 90 bp AATTCATCTGTCTGTCCTGGAAGGAAGAGCTTTTCTTGGCTGTCCTaGGTAAGGCTGATTGGTCCAGTGACACCTTCATATCCATACACC +
Preference number: 6 (lower is better)
Translates to: NSSVCPGRKSFSWLS*VRLIGPVTPSYPYT
Trigger: GGTGTATGGATATGAAGGTGTCACTGGACCAATCAGCCTTACCAAGGACAGCCAAGAAAAGCTCTTCCTTCCAGGACAGACAGATGAATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS TCA 72 bp TACATGCCAGGATTGTCCGATGACACCCGCCACAAATaGTTTTCTCTCAGGAGCCATTTGCCATTGTCAATC +
Preference number: 6 (lower is better)
Translates to: YMPGLSDDTRHK*FSLRSHLPLSI
Trigger: GATTGACAATGGCAAATGGCTCCTGAGAGAAAATCATTTGTGGCGGGTGTCATCGGACAATCCTGGCATGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS TCA 72 bp AGAAGAAGGCATACTCATGGTTGGTTGTGGGATCCCTaGCCACAACATCCTCAAGAAACCAGCCATTTCCTT +
Preference number: 6 (lower is better)
Translates to: RRRHTHGWLWDP*PQHPQETSHFL
Trigger: AAGGAAATGGCTGGTTTCTTGAGGATGTTGTGGTCAGGGATCCCACAACCAACCATGAGTATGCCTTCTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS TCA 72 bp CCTTCATATCCATACACCCACAATGTGACATTGGCCTaGGTACCTGTGTTTCCAGTCACCACTAAGACCTTC +
Preference number: 6 (lower is better)
Translates to: PSYPYTHNVTLA*VPVFPVTTKTF
Trigger: GAAGGTCTTAGTGGTGACTGGAAACACAGGTACTCAGGCCAATGTCACATTGTGGGTGTATGGATATGAAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS TCA 72 bp CACCTGTCCACGCTGAAACATAGCTTTCCTGCTCCCTaGTTGATGAAGTCTTCGTTTTCCAGAATCGCCATT +
Preference number: 6 (lower is better)
Translates to: HLSTLKHSFPAP*LMKSSFSRIAI
Trigger: AATGGCGATTCTGGAAAACGAAGACTTCATCAATCAGGGAGCAGGAAAGCTATGTTTCAGCGTGGACAGGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS GCA 72 bp CTGAAGCTGTCATTGGCATTACCACAAGTTCTGAAGTaGTTGATAGTGGCTGTGCCTGATACTGCACTGTTG +
Preference number: 6 (lower is better)
Translates to: LKLSLALPQVLK*LIVAVPDTALL
Trigger: CAACAGTGCAGTATCAGGCACAGCCACTATCAAGCACTTCAGAACTTGTGGTAATGCCAATGACAGCTTCAG
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS GCA 72 bp GCCTTCAAGTCATCAGCTTCCTCTGTGATGGCAACATaGTTCAGAACTTCCAACAATGCAGCAGTTTCCGAA +
Preference number: 6 (lower is better)
Translates to: AFKSSASSVMAT*FRTSNNAAVSE
Trigger: TTCGGAAACTGCTGCATTGTTGGAAGTTCTGAAGCATGTTGCCATCACAGAGGAAGCTGATGACTTGAAGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS GCA 72 bp TTTTCCATTGTCACCCTCTGTAAGGTCCACTCTGGTTaGCCACCAGTTCCATCATGTCCTATTCTGATCTTG +
Preference number: 6 (lower is better)
Translates to: FSIVTLCKVHSG*PPVPSCPILIL
Trigger: CAAGATCAGAATAGGACATGATGGAACTGGTGGGCAACCAGAGTGGACCTTACAGAGGGTGACAATGGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CCA 72 bp GAAGAGCTTTTCTTGGCTGTCCTTGGTAAGGCTGATTaGTCCAGTGACACCTTCATATCCATACACCCACAA +
Preference number: 6 (lower is better)
Translates to: EELFLAVLGKAD*SSDTFISIHPQ
Trigger: TTGTGGGTGTATGGATATGAAGGTGTCACTGGACCAATCAGCCTTACCAAGGACAGCCAAGAAAAGCTCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CCA 72 bp AATTCATCTGTCTGTCCTGGAAGGAAGAGCTTTTCTTaGCTGTCCTTGGTAAGGCTGATTGGTCCAGTGACA +
Preference number: 6 (lower is better)
Translates to: NSSVCPGRKSFS*LSLVRLIGPVT
Trigger: TGTCACTGGACCAATCAGCCTTACCAAGGACAGCCAAGAAAAGCTCTTCCTTCCAGGACAGACAGATGAATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CAA 72 bp CTGTGCCTTCTTCCACGACTGAGTTCTCTGGTGCAGTaGACGGTAAAGCATTGTTGTGGCACATCTTTAAGA +
Preference number: 6 (lower is better)
Translates to: LCLLPRLSSLVQ*TVKHCCGTSLR
Trigger: TCTTAAAGATGTGCCACAACAATGCTTTACCGTCAACTGCACCAGAGAACTCAGTCGTGGAAGAAGGCACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CAA 72 bp ATATCTTGTTCTCTCCCACTGGACCCACTGCAAGTTTaGGTTGATTCCATCAAGTTGGCAACAGCAGCCTTC +
Preference number: 6 (lower is better)
Translates to: ISCSLPLDPLQV*VDSIKLATAAF
Trigger: GAAGGCTGCTGTTGCCAACTTGATGGAATCAACCAAAACTTGCAGTGGGTCCAGTGGGAGAGAACAAGATAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CAA 90 bp TACAACCTGAAATTCATCTGTCTGTCCTGGAAGGAAGAGCTTTTCTaGGCTGTCCTTGGTAAGGCTGATTGGTCCAGTGACACCTTCATA +
Preference number: 6 (lower is better)
Translates to: YNLKFICLSWKEELF*AVLGKADWSSDTFI
Trigger: TATGAAGGTGTCACTGGACCAATCAGCCTTACCAAGGACAGCCAAGAAAAGCTCTTCCTTCCAGGACAGACAGATGAATTTCAGGTTGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS TCA 72 bp ACTGATGCGTTTAGCCACTACAGGATGAGTGATATTTaGATGGCGAGGGGAAGGAACTTGACCTTCAGAAGT +
Preference number: 6 (lower is better)
Translates to: TDAFSHYRMSDI*MARGRNLTFRS
Trigger: ACTTCTGAAGGTCAAGTTCCTTCCCCTCGCCATTCAAATATCACTCATCCTGTAGTGGCTAAACGCATCAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS TCA 72 bp TTTTCTATCTTGGCTTTTCCCTTCTGGTGCACACGATaGGAGATTCCTGGTAACTTGGCAGGAAGCAAGTAC +
Preference number: 6 (lower is better)
Translates to: FSILAFPFWCTR*EIPGNLAGSKY
Trigger: GTACTTGCTTCCTGCCAAGTTACCAGGAATCTCTCATCGTGTGCACCAGAAGGGAAAAGCCAAGATAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS GCA 72 bp GCTCTGTCATTTGAGTATTTTCTTCCTCTGTCAAACTaGCCTGCTGAGTGGTATCTACGATGTCTTCAGGCA +
Preference number: 6 (lower is better)
Translates to: ALSFEYFLPLSN*PAEWYLRCLQA
Trigger: TGCCTGAAGACATCGTAGATACCACTCAGCAGGGCAGTTTGACAGAGGAAGAAAATACTCAAATGACAGAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS GCA 72 bp ACATCTTGCTTCGCCATAGACACAAAGGGATACTGTTaGCGTGGTACCAGCATTTTCAAGATCTCCAGTAAC +
Preference number: 6 (lower is better)
Translates to: TSCFAIDTKGYC*RGTSIFKISSN
Trigger: GTTACTGGAGATCTTGAAAATGCTGGTACCACGGCAACAGTATCCCTTTGTGTCTATGGCGAAGCAAGATGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CCA 72 bp CAATCATATGTTTTCTCCGAGATCAGGGAATCAGTCTaGGGTCTTAGGTCTGAAGGCATATGTGTGCTCATC +
Preference number: 6 (lower is better)
Translates to: QSYVFSEIRESV*GLRSEGICVLI
Trigger: GATGAGCACACATATGCCTTCAGACCTAAGACCCCAGACTGATTCCCTGATCTCGGAGAAAACATATGATTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CCA 72 bp CAATGCTGTTCTTATCTATTAGAGTATCCACTGATGTaGTGTCTGCATTGCCGTACATGCCAGGATTGTCCG +
Preference number: 6 (lower is better)
Translates to: QCCSYLLEYPLM*CLHCRTCQDCP
Trigger: CGGACAATCCTGGCATGTACGGCAATGCAGACACCACATCAGTGGATACTCTAATAGATAAGAACAGCATTG
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CCA 72 bp TGCCTGTCCATCTGGTTGAAGTCCAACAAACAGTCCTaGGCTCTTCAGAGATTCCAGACTTATAGATGCATT +
Preference number: 6 (lower is better)
Translates to: CLSIWLKSNKQS*ALQRFQTYRCI
Trigger: AATGCATCTATAAGTCTGGAATCTCTGAAGAGCCCAGGACTGTTTGTTGGACTTCAACCAGATGGACAGGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CAA 72 bp TTTCCTCTATTTCTGAAGAGGACAGTTCAGCCATTGTaGGACCAGGAGCCAGCTCTCCGAAATGTGAATATG +
Preference number: 6 (lower is better)
Translates to: FPLFLKRTVQPL*DQEPALRNVNM
Trigger: CATATTCACATTTCGGAGAGCTGGCTCCTGGTCCAACAATGGCTGAACTGTCCTCTTCAGAAATAGAGGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CAA 72 bp TCATTTCCTCTATTTCTGAAGAGGACAGTTCAGCCATaGTTGGACCAGGAGCCAGCTCTCCGAAATGTGAAT +
Preference number: 6 (lower is better)
Translates to: SFPLFLKRTVQP*LDQEPALRNVN
Trigger: ATTCACATTTCGGAGAGCTGGCTCCTGGTCCAACAATGGCTGAACTGTCCTCTTCAGAAATAGAGGAAATGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CAA 72 bp TGTCTCCATCAGCCTGGTTCCGAGAAAGACACACATTaGCAACAAAATGTAGGGTCTTCTTGCTCTTCACGT +
Preference number: 6 (lower is better)
Translates to: CLHQPGSEKDTH*QQNVGSSCSSR
Trigger: ACGTGAAGAGCAAGAAGACCCTACATTTTGTTGCAAATGTGTGTCTTTCTCGGAACCAGGCTGATGGAGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CAA 90 bp CCTTTCCCCATAGAGACACAGGGAGACTTCAGACTCAGTTTTTGCTaGTTTCAACTGTCCCGTATACACATCAACATGGTATCTCACCAA +
Preference number: 6 (lower is better)
Translates to: PFPIETQGDFRLSFC*FQLSRIHINMVSHQ
Trigger: TTGGTGAGATACCATGTTGATGTGTATACGGGACAGTTGAAACAAGCAAAAACTGAGTCTGAAGTCTCCCTGTGTCTCTATGGGGAAAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS TCA 72 bp TCGAGAAACCATCCATTACCTGGACCTGTCCCATCATaGCTAATCAGAACTTTCTTCAGGTTTCCAAGAGAC +
Preference number: 6 (lower is better)
Translates to: SRNHPLPGPVPS*LIRTFFRFPRD
Trigger: GTCTCTTGGAAACCTGAAGAAAGTTCTGATTAGTCATGATGGGACAGGTCCAGGTAATGGATGGTTTCTCGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS GCA 72 bp CAAACTCTTCCTCCTTTATCAGGACAGTCTGATTCTTaGAATAGTCTTTCCTGTGCAGTTGTTCCAGCTCTG +
Preference number: 6 (lower is better)
Translates to: QTLPPLSGQSDS*NSLSCAVVPAL
Trigger: CAGAGCTGGAACAACTGCACAGGAAAGACTATTGCAAGAATCAGACTGTCCTGATAAAGGAGGAAGAGTTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS GCA 72 bp GAGCCAGCTCTCCGAAATGTGAATATGGCACCTCAATaGTGTTCTTATCTATTAGAGTATCCACTGATGTGG +
Preference number: 6 (lower is better)
Translates to: EPALRNVNMAPQ*CSYLLEYPLMW
Trigger: CCACATCAGTGGATACTCTAATAGATAAGAACAGCATTGAGGTGCCATATTCACATTTCGGAGAGCTGGCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS GCA 72 bp CCCATAGAGACACAGGGAGACTTCAGACTCAGTTTTTaGTTGTTTCAACTGTCCCGTATACACATCAACATG +
Preference number: 6 (lower is better)
Translates to: PIETQGDFRLSF*LFQLSRIHINM
Trigger: CATGTTGATGTGTATACGGGACAGTTGAAACAAGCAAAAACTGAGTCTGAAGTCTCCCTGTGTCTCTATGGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CCA 72 bp CCTTCTGGTGCACACGATGAGAGATTCCTGGTAACTTaGCAGGAAGCAAGTACTTTTGTATGTCGTAATTTC +
Preference number: 6 (lower is better)
Translates to: PSGAHDERFLVT*QEASTFVCRNF
Trigger: GAAATTACGACATACAAAAGTACTTGCTTCCTGCCAAGTTACCAGGAATCTCTCATCGTGTGCACCAGAAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027032.6
ENSMUST00000208660.2
CDS CCA 72 bp AAAGGCTTGAGTAACAGATGTACACAGTCTTTCCGATaGATAATTACCCTTCTCCTCTGTGTGATGGTTGGG +
Preference number: 6 (lower is better)
Translates to: KGLSNRCTQSFR*IITLLLCVMVG
Trigger: CCCAACCATCACACAGAGGAGAAGGGTAATTATCCATCGGAAAGACTGTGTACATCTGTTACTCAAGCCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CAA 72 bp TGGTCCAGGAGTTGGGGGTCTATAAAAGTGTTTCACTaGTTTCTGGCTTTCCTGAATGTCTGTCTCCATAGA +
Preference number: 6 (lower is better)
Translates to: WSRSWGSIKVFH*FLAFLNVCLHR
Trigger: TCTATGGAGACAGACATTCAGGAAAGCCAGAAACAAGTGAAACACTTTTATAGACCCCCAACTCCTGGACCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CAA 72 bp TGCTCTTTTAACAATTCCTCTTGTGGGCTCTTTCTCTaGGCCAGAGTCATCATTGTGACTATTGCTCGATGC +
Preference number: 6 (lower is better)
Translates to: CSFNNSSCGLFL*ARVIIVTIARC
Trigger: GCATCGAGCAATAGTCACAATGATGACTCTGGCCAAGAGAAAGAGCCCACAAGAGGAATTGTTAAAAGAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CAA 72 bp CCAGAGTTCCAGAGCTCCCCTGTTGTAATATATACCTaGTATGTTGTCACTGGAAGGACAGGTTGTCCTTTA +
Preference number: 6 (lower is better)
Translates to: PEFQSSPVVIYT*YVVTGRTGCPL
Trigger: TAAAGGACAACCTGTCCTTCCAGTGACAACATACAAGGTATATATTACAACAGGGGAGCTCTGGAACTCTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CAA 72 bp CCCCATAGAGACACAGGGAGACTTCAGACTCAGTTTTaGCTTGTTTCAACTGTCCCGTATACACATCAACAT +
Preference number: 6 (lower is better)
Translates to: PHRDTGRLQTQF*LVSTVPYTHQH
Trigger: ATGTTGATGTGTATACGGGACAGTTGAAACAAGCAAAAACTGAGTCTGAAGTCTCCCTGTGTCTCTATGGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CAA 90 bp CTCTGTTTCAGATACTACTGTGACAGTCCCTATCACAGATTTCTTTaGTCTCATTCTCCTTGGTCCAGGAGTTGGGGGTCTATAAAAGTG +
Preference number: 6 (lower is better)
Translates to: LCFRYYCDSPYHRFL*SHSPWSRSWGSIKV
Trigger: CACTTTTATAGACCCCCAACTCCTGGACCAAGGAGAATGAGACAAAAGAAATCTGTGATAGGGACTGTCACAGTAGTATCTGAAACAGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CAA 90 bp ACTCTCATCTTTAGTATAAATGACAGGTTTTGCCTGTCCATCTGGTaGAAGTCCAACAAACAGTCCTGGGCTCTTCAGAGATTCCAGACT +
Preference number: 6 (lower is better)
Translates to: TLIFSINDRFCLSIW*KSNKQSWALQRFQT
Trigger: AGTCTGGAATCTCTGAAGAGCCCAGGACTGTTTGTTGGACTTCAACCAGATGGACAGGCAAAACCTGTCATTTATACTAAAGATGAGAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS TCA 72 bp ACTCTGGTTGCCCACCAGTTCCATCATGTCCTATTCTaGTCTTGTATATCTCTCCAATGCCTCTTAGTACAA +
Preference number: 6 (lower is better)
Translates to: TLVAHQFHHVLF*SCISLQCLLVQ
Trigger: TTGTACTAAGAGGCATTGGAGAGATATACAAGATCAGAATAGGACATGATGGAACTGGTGGGCAACCAGAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS GCA 72 bp TCTACCTGTTTTGGAGGATTAGTTTTGCTCACCATGTaGATCTCACATGAGGAGTTACATGACTTGCTAACC +
Preference number: 6 (lower is better)
Translates to: STCFGGLVLLTM*ISHEELHDLLT
Trigger: GGTTAGCAAGTCATGTAACTCCTCATGTGAGATGCACATGGTGAGCAAAACTAATCCTCCAAAACAGGTAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS GCA 72 bp GCTCTTTCTCTTGGCCAGAGTCATCATTGTGACTATTaGTCGATGCTTTACAAGGATATCCACTCTCACTAT +
Preference number: 6 (lower is better)
Translates to: ALSLGQSHHCDY*SMLYKDIHSHY
Trigger: ATAGTGAGAGTGGATATCCTTGTAAAGCATCGAGCAATAGTCACAATGATGACTCTGGCCAAGAGAAAGAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CCA 72 bp GAACTTCCAACAATGCAGCAGTTTCCGAAGGTCTGTTaGTCATCTTATGAGCATCACTTTGACAGAAGCTAT +
Preference number: 6 (lower is better)
Translates to: ELPTMQQFPKVC*SSYEHHFDRSY
Trigger: ATAGCTTCTGTCAAAGTGATGCTCATAAGATGACCAACAGACCTTCGGAAACTGCTGCATTGTTGGAAGTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CCA 72 bp ATTACAGGAAGCTCACAGACAATGTCTCCATCAGCCTaGTTCCGAGAAAGACACACATTTGCAACAAAATGT +
Preference number: 6 (lower is better)
Translates to: ITGSSQTMSPSA*FRERHTFATKC
Trigger: ACATTTTGTTGCAAATGTGTGTCTTTCTCGGAACCAGGCTGATGGAGACATTGTCTGTGAGCTTCCTGTAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CAA 72 bp GGAGTTGAATCTGCTGTGATAGAACTGAAGCTGTCATaGGCATTACCACAAGTTCTGAAGTGCTTGATAGTG +
Preference number: 6 (lower is better)
Translates to: GVESAVIELKLS*ALPQVLKCLIV
Trigger: CACTATCAAGCACTTCAGAACTTGTGGTAATGCCAATGACAGCTTCAGTTCTATCACAGCAGATTCAACTCC
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CAA 72 bp TCACTCTGGTCATCTACCTGTTTTGGAGGATTAGTTTaGCTCACCATGTGCATCTCACATGAGGAGTTACAT +
Preference number: 6 (lower is better)
Translates to: SLWSSTCFGGLV*LTMCISHEELH
Trigger: ATGTAACTCCTCATGTGAGATGCACATGGTGAGCAAAACTAATCCTCCAAAACAGGTAGATGACCAGAGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CAA 72 bp TTTAGTATAAATGACAGGTTTTGCCTGTCCATCTGGTaGAAGTCCAACAAACAGTCCTGGGCTCTTCAGAGA +
Preference number: 6 (lower is better)
Translates to: FSINDRFCLSIW*KSNKQSWALQR
Trigger: TCTCTGAAGAGCCCAGGACTGTTTGTTGGACTTCAACCAGATGGACAGGCAAAACCTGTCATTTATACTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS TCA 72 bp CAGTTTTCACACTTTCAAACATGCAGATCCCAGAACTaGTTCTATGCACTCTCCAGTGGGATTGTTCTGATT +
Preference number: 6 (lower is better)
Translates to: QFSHFQTCRSQN*FYALSSGIVLI
Trigger: AATCAGAACAATCCCACTGGAGAGTGCATAGAATCAGTTCTGGGATCTGCATGTTTGAAAGTGTGAAAACTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS GCA 72 bp TTCAGAGAAGCTAATGGATCTGCCCTGGTTGTAACATaGTGTTCACTTACCTCAGCACCTGACTTTAATTTA +
Preference number: 6 (lower is better)
Translates to: FREANGSALVVT*CSLTSAPDFNL
Trigger: TAAATTAAAGTCAGGTGCTGAGGTAAGTGAACAGCATGTTACAACCAGGGCAGATCCATTAGCTTCTCTGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS GCA 72 bp AAAGACACACATTTGCAACAAAATGTAGGGTCTTCTTaGTCTTCACGTTTTCCATTGTCACCCTCTGTAAGG +
Preference number: 6 (lower is better)
Translates to: KDTHLQQNVGSS*SSRFPLSPSVR
Trigger: CCTTACAGAGGGTGACAATGGAAAACGTGAAGAGCAAGAAGACCCTACATTTTGTTGCAAATGTGTGTCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CCA 72 bp TCAAGAAACCAGCCATTTCCTTGCCCAAGTCCATCATaGCCTATAACAATCTTGCATAAATCTCCAAGGTTT +
Preference number: 6 (lower is better)
Translates to: SRNQPFPCPSPS*PITILHKSPRF
Trigger: AAACCTTGGAGATTTATGCAAGATTGTTATAGGCCATGATGGACTTGGGCAAGGAAATGGCTGGTTTCTTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CCA 72 bp TTTGCTTGTTTCAACTGTCCCGTATACACATCAACATaGTATCTCACCAATGGAAAAACAGGCTCTCCTTCT +
Preference number: 6 (lower is better)
Translates to: FACFNCPVYTST*YLTNGKTGSPS
Trigger: AGAAGGAGAGCCTGTTTTTCCATTGGTGAGATACCATGTTGATGTGTATACGGGACAGTTGAAACAAGCAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CAA 72 bp TGCCATTCCTTTCAAATTTCTAGCTACTTTCTCCACTaGGAACGGTGGTCTGTGCAAAACTTTCTGATCTTC +
Preference number: 6 (lower is better)
Translates to: CHSFQISSYFLH*ERWSVQNFLIF
Trigger: GAAGATCAGAAAGTTTTGCACAGACCACCGTTCCAAGTGGAGAAAGTAGCTAGAAATTTGAAAGGAATGGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CAA 72 bp GAAAGACACACATTTGCAACAAAATGTAGGGTCTTCTaGCTCTTCACGTTTTCCATTGTCACCCTCTGTAAG +
Preference number: 6 (lower is better)
Translates to: ERHTFATKCRVF*LFTFSIVTLCK
Trigger: CTTACAGAGGGTGACAATGGAAAACGTGAAGAGCAAGAAGACCCTACATTTTGTTGCAAATGTGTGTCTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CAA 72 bp ATAGAGACACAGGGAGACTTCAGACTCAGTTTTTGCTaGTTTCAACTGTCCCGTATACACATCAACATGGTA +
Preference number: 6 (lower is better)
Translates to: IETQGDFRLSFC*FQLSRIHINMV
Trigger: TACCATGTTGATGTGTATACGGGACAGTTGAAACAAGCAAAAACTGAGTCTGAAGTCTCCCTGTGTCTCTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CAA 90 bp CTTTTCTATTGCTCTTTTAACAATTCCTCTTGTGGGCTCTTTCTCTaGGCCAGAGTCATCATTGTGACTATTGCTCGATGCTTTACAAGG +
Preference number: 6 (lower is better)
Translates to: LFYCSFNNSSCGLFL*ARVIIVTIARCFTR
Trigger: CCTTGTAAAGCATCGAGCAATAGTCACAATGATGACTCTGGCCAAGAGAAAGAGCCCACAAGAGGAATTGTTAAAAGAGCAATAGAAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CAA 90 bp AACCAGCCATTTCCTTGCCCAAGTCCATCATGGCCTATAACAATCTaGCATAAATCTCCAAGGTTTACAGCTTCTAGAAAGAAGGTATCA +
Preference number: 6 (lower is better)
Translates to: NQPFPCPSPSWPITI*HKSPRFTASRKKVS
Trigger: TGATACCTTCTTTCTAGAAGCTGTAAACCTTGGAGATTTATGCAAGATTGTTATAGGCCATGATGGACTTGGGCAAGGAAATGGCTGGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CAA 90 bp TTCCATTTTTCTTCTAACAGAAGTGTCTCAATCCTGCACAGATGCTaGCTTTCTTTTTCTGATGATGATGGTGAGGAACATCTGGCCTTG +
Preference number: 6 (lower is better)
Translates to: FHFSSNRSVSILHRC*LSFSDDDGEEHLAL
Trigger: CAAGGCCAGATGTTCCTCACCATCATCATCAGAAAAAGAAAGCAAGCATCTGTGCAGGATTGAGACACTTCTGTTAGAAGAAAAATGGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CAA 90 bp GCTATTGTTCCAGAGTTCCAGAGCTCCCCTGTTGTAATATATACCTaGTATGTTGTCACTGGAAGGACAGGTTGTCCTTTACATAAAATA +
Preference number: 6 (lower is better)
Translates to: AIVPEFQSSPVVIYT*YVVTGRTGCPLHKI
Trigger: TATTTTATGTAAAGGACAACCTGTCCTTCCAGTGACAACATACAAGGTATATATTACAACAGGGGAGCTCTGGAACTCTGGAACAATAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS TCA 72 bp ATCTTGTATATCTCTCCAATGCCTCTTAGTACAACCTaGAATTCATCTGTCTGTCCTGGAAGGAAGAGCTTT +
Preference number: 6 (lower is better)
Translates to: ILYISPMPLSTT*NSSVCPGRKSF
Trigger: AAAGCTCTTCCTTCCAGGACAGACAGATGAATTTCAGGTTGTACTAAGAGGCATTGGAGAGATATACAAGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS GCA 72 bp CCACCAACCATTCCATTGTCAAAGTTAAGAGAGAGATaGCTCATCTCATGGCTTTGGAAAACACATATATTC +
Preference number: 6 (lower is better)
Translates to: PPTIPLSKLRER*LISWLWKTHIF
Trigger: GAATATATGTGTTTTCCAAAGCCATGAGATGAGGCATCTCTCTCTTAACTTTGACAATGGAATGGTTGGTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS GCA 72 bp ATTACAGTACCCATCCTTAATCCTCAGATACATTCGTaGAGTTTTCACACTTTCAAACATGCAGATCCCAGA +
Preference number: 6 (lower is better)
Translates to: ITVPILNPQIHS*SFHTFKHADPR
Trigger: TCTGGGATCTGCATGTTTGAAAGTGTGAAAACTGCACGAATGTATCTGAGGATTAAGGATGGGTACTGTAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CAA 72 bp TTTCCTTGCCCAAGTCCATCATGGCCTATAACAATCTaGCATAAATCTCCAAGGTTTACAGCTTCTAGAAAG +
Preference number: 6 (lower is better)
Translates to: FPCPSPSWPITI*HKSPRFTASRK
Trigger: CTTTCTAGAAGCTGTAAACCTTGGAGATTTATGCAAGATTGTTATAGGCCATGATGGACTTGGGCAAGGAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CAA 72 bp TCTTCTAACAGAAGTGTCTCAATCCTGCACAGATGCTaGCTTTCTTTTTCTGATGATGATGGTGAGGAACAT +
Preference number: 6 (lower is better)
Translates to: SSNRSVSILHRC*LSFSDDDGEEH
Trigger: ATGTTCCTCACCATCATCATCAGAAAAAGAAAGCAAGCATCTGTGCAGGATTGAGACACTTCTGTTAGAAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS GCA 72 bp TTTTCTTCTAACAGAAGTGTCTCAATCCTGCACAGATaGTTGCTTTCTTTTTCTGATGATGATGGTGAGGAA +
Preference number: 6 (lower is better)
Translates to: FSSNRSVSILHR*LLSFSDDDGEE
Trigger: TTCCTCACCATCATCATCAGAAAAAGAAAGCAAGCATCTGTGCAGGATTGAGACACTTCTGTTAGAAGAAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CCA 72 bp TTTCAAATTTCTAGCTACTTTCTCCACTTGGAACGGTaGTCTGTGCAAAACTTTCTGATCTTCTTCAAGGAT +
Preference number: 6 (lower is better)
Translates to: FQISSYFLHLER*SVQNFLIFFKD
Trigger: ATCCTTGAAGAAGATCAGAAAGTTTTGCACAGACCACCGTTCCAAGTGGAGAAAGTAGCTAGAAATTTGAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CAA 72 bp CAATCGATTTCTCAACATCATCTTCAGAAGGATAAGTaGATAGAGACTGAGACTCATGTGTTTCTAAGGCCA +
Preference number: 6 (lower is better)
Translates to: QSISQHHLQKDK*IETETHVFLRP
Trigger: TGGCCTTAGAAACACATGAGTCTCAGTCTCTATCAACTTATCCTTCTGAAGATGATGTTGAGAAATCGATTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CAA 72 bp AGGAAATTCTCGACAGATTTCTCCATCCTCTTGCTCTaGTGCCAGCCATCTTTGAACAGGAATATAAAATTT +
Preference number: 6 (lower is better)
Translates to: RKFSTDFSILLL*CQPSLNRNIKF
Trigger: AAATTTTATATTCCTGTTCAAAGATGGCTGGCACAAGAGCAAGAGGATGGAGAAATCTGTCGAGAATTTCCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CAA 90 bp GAATCTGCCAGAATGCTTAGACCTTTTGGAACTTTGTCAACAGTTTaGAGTTCTTCAGTTGATTCCAGATCATCAGTGCATTTGTTTTCT +
Preference number: 6 (lower is better)
Translates to: ESARMLRPFGTLSTV*SSSVDSRSSVHLFS
Trigger: AGAAAACAAATGCACTGATGATCTGGAATCAACTGAAGAACTCAAAACTGTTGACAAAGTTCCAAAAGGTCTAAGCATTCTGGCAGATTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CAA 90 bp AGTGTCCATATAAAACAATATAAATCTGGGAGCTGGTCCCTGCATTaGGAAAGTCACTTGTGTTTATTGAAACTTTCCAGTTTCCACTCT +
Preference number: 6 (lower is better)
Translates to: SVHIKQYKSGSWSLH*ESHLCLLKLSSFHS
Trigger: AGAGTGGAAACTGGAAAGTTTCAATAAACACAAGTGACTTTCCAAATGCAGGGACCAGCTCCCAGATTTATATTGTTTTATATGGACACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS TCA 72 bp GAAGTATTTTATCTTCTTGACCAATCTCTTGTTTTCTaGGTCTTTCTGTGCTTACAATCTTTCGTGGCCTTG +
Preference number: 6 (lower is better)
Translates to: EVFYLLDQSLVF*VFLCLQSFVAL
Trigger: CAAGGCCACGAAAGATTGTAAGCACAGAAAGACTCAGAAAACAAGAGATTGGTCAAGAAGATAAAATACTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CCA 72 bp TACAGTGTCCATATAAAACAATATAAATCTGGGAGCTaGTCCCTGCATTTGGAAAGTCACTTGTGTTTATTG +
Preference number: 6 (lower is better)
Translates to: YSVHIKQYKSGS*SLHLESHLCLL
Trigger: CAATAAACACAAGTGACTTTCCAAATGCAGGGACCAGCTCCCAGATTTATATTGTTTTATATGGACACTGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2
CDS CAA 72 bp TTAGGTTTAGTACCAAAAGCCAAGCCAGAAGGAGATTaGTGGATGAATTATCTATTACAGAAGGGAAGACAA +
Preference number: 6 (lower is better)
Translates to: LGLVPKAKPEGD*WMNYLLQKGRQ
Trigger: TTGTCTTCCCTTCTGTAATAGATAATTCATCCACAAATCTCCTTCTGGCTTGGCTTTTGGTACTAAACCTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CAA 72 bp AGAATGCTTAGACCTTTTGGAACTTTGTCAACAGTTTaGAGTTCTTCAGTTGATTCCAGATCATCAGTGCAT +
Preference number: 6 (lower is better)
Translates to: RMLRPFGTLSTV*SSSVDSRSSVH
Trigger: ATGCACTGATGATCTGGAATCAACTGAAGAACTCAAAACTGTTGACAAAGTTCCAAAAGGTCTAAGCATTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS TCA 72 bp AATCGAACTTTCATCACGACCGTCATCGTACCATCTTaGTTAAAAACAATCGATTTCTCAACATCATCTTCA +
Preference number: 6 (lower is better)
Translates to: NRTFITTVIVPS*LKTIDFSTSSS
Trigger: TGAAGATGATGTTGAGAAATCGATTGTTTTTAATCAAGATGGTACGATGACGGTCGTGATGAAAGTTCGATT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS TCA 72 bp AGTTTCGAGTCACTATGGAGAAGTATTTTATCTTCTTaGCCAATCTCTTGTTTTCTGAGTCTTTCTGTGCTT +
Preference number: 6 (lower is better)
Translates to: SFESLWRSILSS*PISCFLSLSVL
Trigger: AAGCACAGAAAGACTCAGAAAACAAGAGATTGGTCAAGAAGATAAAATACTTCTCCATAGTGACTCGAAACT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CCA 72 bp AACTTGAGATTTGTGTATAGACCCATGGAAAAATGGTaGTTTGATAATCTCTGCTTTGCCATAAAGCTTTTC +
Preference number: 6 (lower is better)
Translates to: NLRFVYRPMEKW*FDNLCFAIKLF
Trigger: GAAAAGCTTTATGGCAAAGCAGAGATTATCAAACCACCATTTTTCCATGGGTCTATACACAAATCTCAAGTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CCA 72 bp ACAAACTTGAGATTTGTGTATAGACCCATGGAAAAATaGTGGTTTGATAATCTCTGCTTTGCCATAAAGCTT +
Preference number: 6 (lower is better)
Translates to: TNLRFVYRPMEK*WFDNLCFAIKL
Trigger: AAGCTTTATGGCAAAGCAGAGATTATCAAACCACCATTTTTCCATGGGTCTATACACAAATCTCAAGTTTGT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CCA 72 bp AAACAGAATTCCTATTCTCCACCACTAGCAATGACGTaGACAAAGGATCGGAAAAGCTTTTCTTTAAATATA +
Preference number: 6 (lower is better)
Translates to: KQNSYSPPLAMT*TKDRKSFSLNI
Trigger: TATATTTAAAGAAAAGCTTTTCCGATCCTTTGTCCACGTCATTGCTAGTGGTGGAGAATAGGAATTCTGTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CAA 72 bp TCCCATAGTATCTACCTGAATGGCAACTTCAATACTTaGCCTTTTTGTAGCAAAGTTCATTTCTTGGTAAAC +
Preference number: 6 (lower is better)
Translates to: SHSIYLNGNFNT*PFCSKVHFLVN
Trigger: GTTTACCAAGAAATGAACTTTGCTACAAAAAGGCAAAGTATTGAAGTTGCCATTCAGGTAGATACTATGGGA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027032.6
CDS CAA 72 bp ATAAAACAATATAAATCTGGGAGCTGGTCCCTGCATTaGGAAAGTCACTTGTGTTTATTGAAACTTTCCAGT +
Preference number: 6 (lower is better)
Translates to: IKQYKSGSWSLH*ESHLCLLKLSS
Trigger: ACTGGAAAGTTTCAATAAACACAAGTGACTTTCCAAATGCAGGGACCAGCTCCCAGATTTATATTGTTTTAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208660.2