RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ROR1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035305

Ensembl transcript IDs: ENSMUST00000039630.6

Found 244 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GACTGTGGAAAAGGCCTTCGTGAGAAGAGTAAGGTCACACAGAGATaGTCTACACCATCCCCGAGAAACCTGGCTATGGAGAGGACGTCT +
Preference number: 1 (lower is better)
Translates to: DCGKGLREKSKVTQR*STPSPRNLAMERTS
Trigger: AGACGTCCTCTCCATAGCCAGGTTTCTCGGGGATGGTGTAGAGCATCTCTGTGTGACCTTACTCTTCTCACGAAGGCCTTTTCCACAGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR TCA 90 bp ACTAAAGGAACAGTGACACAACGCTGTTTCTTCTCCCATGGATACTaGTCCGGGCTGAGGGACCATTTTCCTGACTGTACCTCTTTGGGT +
Preference number: 1 (lower is better)
Translates to: TKGTVTQRCFFSHGY*SGLRDHFPDCTSLG
Trigger: ACCCAAAGAGGTACAGTCAGGAAAATGGTCCCTCAGCCCGGATCAGTATCCATGGGAGAAGAAACAGCGTTGTGTCACTGTTCCTTTAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR CCA 90 bp TTAACCATAATAGTGACTTTCCAGAGAAGGTATCGTACTGGCTCATaGAGTGCTAGTCCCCCTTTAAGGGACTCCGTGAAAACTCAGATT +
Preference number: 1 (lower is better)
Translates to: LTIIVTFQRRYRTGS*SASPPLRDSVKTQI
Trigger: AATCTGAGTTTTCACGGAGTCCCTTAAAGGGGGACTAGCACTCCATGAGCCAGTACGATACCTTCTCTGGAAAGTCACTATTATGGTTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR TCA 90 bp CCACGAATAACGTGTTTCAGTTCTTCGGGGCTGGAATTTAATTGGTaGACGTCTCTAGGCAAAGCACAAAGTGAGAGTTTGAATTTACTA +
Preference number: 1 (lower is better)
Translates to: PRITCFSSSGLEFNW*TSLGKAQSESLNLL
Trigger: TAGTAAATTCAAACTCTCACTTTGTGCTTTGCCTAGAGACGTTCACCAATTAAATTCCAGCCCCGAAGAACTGAAACACGTTATTCGTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR CCA 90 bp GTGGTGAAATACAAATGCGTATATCCTGGATATAAAATAGTGTGTTaGTCATTACAAGTCCATGCTTGTAGTTGGAATGCCCACAAAGAC +
Preference number: 1 (lower is better)
Translates to: VVKYKCVYPGYKIVC*SLQVHACSWNAHKD
Trigger: GTCTTTGTGGGCATTCCAACTACAAGCATGGACTTGTAATGACCAACACACTATTTTATATCCAGGATATACGCATTTGTATTTCACCAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR CCA 90 bp GGATATAAAATAGTGTGTTGGTCATTACAAGTCCATGCTTGTAGTTaGAATGCCCACAAAGACAAATCAAACATTAAGCGATACAGTGAT +
Preference number: 1 (lower is better)
Translates to: GYKIVCWSLQVHACS*NAHKDKSNIKRYSD
Trigger: ATCACTGTATCGCTTAATGTTTGATTTGTCTTTGTGGGCATTCCAACTACAAGCATGGACTTGTAATGACCAACACACTATTTTATATCC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR CAA 90 bp CTGACTTGTAAACAAGCTAAAGGCATGGCATGCCTGTGGTTATGCTaGCCTCTAGCATCACGCATTTGCAGCATGAGTGGTCAGGGGAAG +
Preference number: 2 (lower is better)
Translates to: LTCKQAKGMACLWLC*PLASRICSMSGQGK
Trigger: CTTCCCCTGACCACTCATGCTGCAAATGCGTGATGCTAGAGGCAAGCATAACCACAGGCATGCCATGCCTTTAGCTTGTTTACAAGTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR-3UTR TCA 90 bp GGAATGCCCACAAAGACAAATCAAACATTAAGCGATACAGTGATTAAACGCATGCACGCATTTGCAGCATaGGTGGTCAGGGGAAGCTCC +
Preference number: 2 (lower is better)
Translates to: GMPTKTNQTLSDTVIKRMHAFAA*VVRGSS
Trigger: GGAGCTTCCCCTGACCACTCATGCTGCAAATGCGTG...CATGCGTTTAATCACTGTATCGCTTAATGTTTGATTTGTCTTTGTGGGCATTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR-3UTR CCA 90 bp CCTGAATCTCCCAAAGATTCTGAACATGGTAAAAGGTGGTTGGCAAGTAAATACCGAGAAACCTGGCTATaGAGAGGACGTCTGTGGACA +
Preference number: 2 (lower is better)
Translates to: PESPKDSEHGKRWLASKYRETWL*RGRLWT
Trigger: TGTCCACAGACGTCCTCTCCATAGCCAGGTTTCTCG...GTATTTACTTGCCAACCACCTTTTACCATGTTCAGAATCTTTGGGAGATTCAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR-3UTR CCA 90 bp ATAGTGACTTTCCAGAGAAGGTATCGTACTGGCTCATGGAGTGCTAGTCCCCCTATGGTAAAAGGTGGTTaGCAAGTAAATACCAGGATG +
Preference number: 2 (lower is better)
Translates to: IVTFQRRYRTGSWSASPPMVKGG*QVNTRM
Trigger: CATCCTGGTATTTACTTGCCAACCACCTTTTACCAT...AGGGGGACTAGCACTCCATGAGCCAGTACGATACCTTCTCTGGAAAGTCACTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR-3UTR TCA 90 bp TTGAATTTACTAACCTCTGGTAGCATCACAGGGCTTCCTCCTGCTCATTGCCTGTGGCTCATTTCCATCTaGGACTTAAAATGTAACCTT +
Preference number: 2 (lower is better)
Translates to: LNLLTSGSITGLPPAHCLWLISI*DLKCNL
Trigger: AAGGTTACATTTTAAGTCTCAGATGGAAATGAGCCA...CAGGCAATGAGCAGGAGGAAGCCCTGTGATGCTACCAGAGGTTAGTAAATTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR-3UTR TCA 90 bp GGAATGCCCACAAAGACAAATCAAACATTAAGCGATACAGTGATTAAACGCATGGAGGGACCATTTTCCTaGCTGTACCTCTTTGGGTAC +
Preference number: 2 (lower is better)
Translates to: GMPTKTNQTLSDTVIKRMEGPFS*LYLFGY
Trigger: GTACCCAAAGAGGTACAGTCAGGAAAATGGTCCCTC...CATGCGTTTAATCACTGTATCGCTTAATGTTTGATTTGTCTTTGTGGGCATTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR-3UTR TCA 90 bp AACGCATGCAGTGAGGCTAAAGGAGGATATGGTAATGGGAACTACCTGAACACTAAAACTCAGATTCACTaGGACTGTGTCTACTCAAAA +
Preference number: 2 (lower is better)
Translates to: NACSEAKGGYGNGNYLNTKTQIH*DCVYSK
Trigger: TTTTGAGTAGACACAGTCTCAGTGAATCTGAGTTTT...AGTGTTCAGGTAGTTCCCATTACCATATCCTCCTTTAGCCTCACTGCATGCGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR-3UTR CCA 90 bp TTGCATAGCAACAAAAGGATACAAATCTTCTCCTCTACTCCACTTCAAGAAATGGTCCTATTTCCTGGCTaGTGTCTTTCCGGCAAGACA +
Preference number: 2 (lower is better)
Translates to: LHSNKRIQIFSSTPLQEMVLFPG*CLSGKT
Trigger: TGTCTTGCCGGAAAGACACCAGCCAGGAAATAGGAC...CATTTCTTGAAGTGGAGTAGAGGAGAAGATTTGTATCCTTTTGTTGCTATGCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR-3UTR TCA 90 bp TGGTCATTACAAGTCCATGCTTGTAGTTGGAATGCCCACAAAGACAAATCAAACCAACTAAAGGAACAGTaGCACAACGCTGTTTCTTCT +
Preference number: 2 (lower is better)
Translates to: WSLQVHACSWNAHKDKSNQLKEQ*HNAVSS
Trigger: AGAAGAAACAGCGTTGTGTCACTGTTCCTTTAGTTG...GTTTGATTTGTCTTTGTGGGCATTCCAACTACAAGCATGGACTTGTAATGACCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR CAA 90 bp GGGGCAGCATCACAGCACTGTCTTAATACATTAGAACAAGTGGTTTaGAGATTCAGTCCGCTCACCTTAATGGCTTCAGTTATTATAAAA +
Preference number: 2 (lower is better)
Translates to: GAASQHCLNTLEQVV*RFSPLTLMASVIIK
Trigger: TTTTATAATAACTGAAGCCATTAAGGTGAGCGGACTGAATCTCAAAACCACTTGTTCTAATGTATTAAGACAGTGCTGTGATGCTGCCCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR-3UTR TCA 90 bp GGAATGCCCACAAAGACAAATCAAACATTAAGCGATACAGTGATTAAACGCATGCTGGAATTTAATTGGTaGACGTCTCTAGGCAAAGCA +
Preference number: 2 (lower is better)
Translates to: GMPTKTNQTLSDTVIKRMLEFNW*TSLGKA
Trigger: TGCTTTGCCTAGAGACGTTCACCAATTAAATTCCAG...CATGCGTTTAATCACTGTATCGCTTAATGTTTGATTTGTCTTTGTGGGCATTCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR-3UTR CCA 90 bp CCTGAATCTCCCAAAGATTCTGAACATGGTAAAAGGTGGTTGGCAAGTAAATACTCTGTTCCTCTTCATTaGTTTTGCAGTTTTCAGTCC +
Preference number: 2 (lower is better)
Translates to: PESPKDSEHGKRWLASKYSVPLH*FCSFQS
Trigger: GGACTGAAAACTGCAAAACCAATGAAGAGGAACAGA...GTATTTACTTGCCAACCACCTTTTACCATGTTCAGAATCTTTGGGAGATTCAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR-3UTR CCA 90 bp TGGTCATTACAAGTCCATGCTTGTAGTTGGAATGCCCACAAAGACAAATCAAACCTTCACAGAAGATACTaGTTGCAATGTCTGCTAAAT +
Preference number: 2 (lower is better)
Translates to: WSLQVHACSWNAHKDKSNLHRRY*LQCLLN
Trigger: ATTTAGCAGACATTGCAACCAGTATCTTCTGTGAAG...GTTTGATTTGTCTTTGTGGGCATTCCAACTACAAGCATGGACTTGTAATGACCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR-3UTR CCA 90 bp TTGCATAGCAACAAAAGGATACAAATCTTCTCCTCTACTCCACTTCAAGAAATGTCAGTTCTTCGGGGCTaGAATTTAATTGGTGAACGT +
Preference number: 2 (lower is better)
Translates to: LHSNKRIQIFSSTPLQEMSVLRG*NLIGER
Trigger: ACGTTCACCAATTAAATTCCAGCCCCGAAGAACTGA...CATTTCTTGAAGTGGAGTAGAGGAGAAGATTTGTATCCTTTTGTTGCTATGCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR-3UTR CCA 90 bp GGAATGCCCACAAAGACAAATCAAACATTAAGCGATACAGTGATTAAACGCATGGAACATGGTAAAAGGTaGTTGGCAAGTAAATACCAG +
Preference number: 2 (lower is better)
Translates to: GMPTKTNQTLSDTVIKRMEHGKR*LASKYQ
Trigger: CTGGTATTTACTTGCCAACCACCTTTTACCATGTTC...CATGCGTTTAATCACTGTATCGCTTAATGTTTGATTTGTCTTTGTGGGCATTCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR-3UTR CCA 90 bp TTGCATAGCAACAAAAGGATACAAATCTTCTCCTCTACTCCACTTCAAGAAATGAAGTTCATGCTTGTTTaGGAAAACCTAGGCACATTT +
Preference number: 2 (lower is better)
Translates to: LHSNKRIQIFSSTPLQEMKFMLV*ENLGTF
Trigger: AAATGTGCCTAGGTTTTCCCAAACAAGCATGAACTT...CATTTCTTGAAGTGGAGTAGAGGAGAAGATTTGTATCCTTTTGTTGCTATGCAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR-3UTR GCA 90 bp TTGCATAGCAACAAAAGGATACAAATCTTCTCCTCTACTCCACTTCAAGAAATGTTAAGACATCTGCTTTaGGAAATAGGGTATTTTGTC +
Preference number: 2 (lower is better)
Translates to: LHSNKRIQIFSSTPLQEMLRHLL*EIGYFV
Trigger: GACAAAATACCCTATTTCGCAAAGCAGATGTCTTAA...CATTTCTTGAAGTGGAGTAGAGGAGAAGATTTGTATCCTTTTGTTGCTATGCAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR CCA 72 bp TCACACAGAGATGCTCTACACCATCCCCGAGAAACCTaGCTATGGAGAGGACGTCTGTGGACACGATTCATC +
Preference number: 3 (lower is better)
Translates to: SHRDALHHPRET*LWRGRLWTRFI
Trigger: GATGAATCGTGTCCACAGACGTCCTCTCCATAGCCAGGTTTCTCGGGGATGGTGTAGAGCATCTCTGTGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR TCA 72 bp ACAGTGACACAACGCTGTTTCTTCTCCCATGGATACTaGTCCGGGCTGAGGGACCATTTTCCTGACTGTACC +
Preference number: 3 (lower is better)
Translates to: TVTQRCFFSHGY*SGLRDHFPDCT
Trigger: GGTACAGTCAGGAAAATGGTCCCTCAGCCCGGATCAGTATCCATGGGAGAAGAAACAGCGTTGTGTCACTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR GCA 72 bp AAAGGCCTTCGTGAGAAGAGTAAGGTCACACAGAGATaGTCTACACCATCCCCGAGAAACCTGGCTATGGAG +
Preference number: 3 (lower is better)
Translates to: KGLREKSKVTQR*STPSPRNLAME
Trigger: CTCCATAGCCAGGTTTCTCGGGGATGGTGTAGAGCATCTCTGTGTGACCTTACTCTTCTCACGAAGGCCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR TCA 72 bp AACGCTGTTTCTTCTCCCATGGATACTGATCCGGGCTaGGGGACCATTTTCCTGACTGTACCTCTTTGGGTA +
Preference number: 3 (lower is better)
Translates to: NAVSSPMDTDPG*GTIFLTVPLWV
Trigger: TACCCAAAGAGGTACAGTCAGGAAAATGGTCCCTCAGCCCGGATCAGTATCCATGGGAGAAGAAACAGCGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR CCA 72 bp ATAGTGACTTTCCAGAGAAGGTATCGTACTGGCTCATaGAGTGCTAGTCCCCCTTTAAGGGACTCCGTGAAA +
Preference number: 3 (lower is better)
Translates to: IVTFQRRYRTGS*SASPPLRDSVK
Trigger: TTTCACGGAGTCCCTTAAAGGGGGACTAGCACTCCATGAGCCAGTACGATACCTTCTCTGGAAAGTCACTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR-3UTR CAA 90 bp CCTGAATCTCCCAAAGATTCTGAACATGGTAAAAGGTGGTTGGCAAGTAAATACGCTTCCTCCTGCTCATaGCCTGGACCGACAGTAAGC +
Preference number: 3 (lower is better)
Translates to: PESPKDSEHGKRWLASKYASSCS*PGPTVS
Trigger: GCTTACTGTCGGTCCAGGCAATGAGCAGGAGGAAGC...GTATTTACTTGCCAACCACCTTTTACCATGTTCAGAATCTTTGGGAGATTCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR-3UTR CAA 90 bp ATAGTGACTTTCCAGAGAAGGTATCGTACTGGCTCATGGAGTGCTAGTCCCCCTGATATAACTCTTTTCTaGCCACCTTCTAGTTTTTCC +
Preference number: 3 (lower is better)
Translates to: IVTFQRRYRTGSWSASPPDITLF*PPSSFS
Trigger: GGAAAAACTAGAAGGTGGCAAGAAAAGAGTTATATC...AGGGGGACTAGCACTCCATGAGCCAGTACGATACCTTCTCTGGAAAGTCACTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR-3UTR CAA 90 bp TGGTCATTACAAGTCCATGCTTGTAGTTGGAATGCCCACAAAGACAAATCAAACCCTGACTGTACCTCTTaGGGTACCCCATTCCTAAAG +
Preference number: 3 (lower is better)
Translates to: WSLQVHACSWNAHKDKSNPDCTS*GTPFLK
Trigger: CTTTAGGAATGGGGTACCCAAAGAGGTACAGTCAGG...GTTTGATTTGTCTTTGTGGGCATTCCAACTACAAGCATGGACTTGTAATGACCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR-3UTR CAA 90 bp GGAATGCCCACAAAGACAAATCAAACATTAAGCGATACAGTGATTAAACGCATGTCTAGCATCACGCATTaGCAGCATGAGTGGTCAGGG +
Preference number: 3 (lower is better)
Translates to: GMPTKTNQTLSDTVIKRMSSITH*QHEWSG
Trigger: CCCTGACCACTCATGCTGCAAATGCGTGATGCTAGA...CATGCGTTTAATCACTGTATCGCTTAATGTTTGATTTGTCTTTGTGGGCATTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR-3UTR CAA 90 bp TGGTCATTACAAGTCCATGCTTGTAGTTGGAATGCCCACAAAGACAAATCAAACTGCCTGTGGTTATGCTaGCCTCTAGCATCACGCATT +
Preference number: 3 (lower is better)
Translates to: WSLQVHACSWNAHKDKSNCLWLC*PLASRI
Trigger: AATGCGTGATGCTAGAGGCAAGCATAACCACAGGCA...GTTTGATTTGTCTTTGTGGGCATTCCAACTACAAGCATGGACTTGTAATGACCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR-3UTR CAA 90 bp AACGCATGCAGTGAGGCTAAAGGAGGATATGGTAATGGGAACTACCTGAACACTTCCTCTTCATTGGTTTaGCAGTTTTCAGTCCTTGAA +
Preference number: 3 (lower is better)
Translates to: NACSEAKGGYGNGNYLNTSSSLV*QFSVLE
Trigger: TTCAAGGACTGAAAACTGCAAAACCAATGAAGAGGA...AGTGTTCAGGTAGTTCCCATTACCATATCCTCCTTTAGCCTCACTGCATGCGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR-3UTR CAA 90 bp AACGCATGCAGTGAGGCTAAAGGAGGATATGGTAATGGGAACTACCTGAACACTGCACAAAGTGAGAGTTaGAATTTACTAACCTCTGGT +
Preference number: 3 (lower is better)
Translates to: NACSEAKGGYGNGNYLNTAQSES*NLLTSG
Trigger: ACCAGAGGTTAGTAAATTCAAACTCTCACTTTGTGC...AGTGTTCAGGTAGTTCCCATTACCATATCCTCCTTTAGCCTCACTGCATGCGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR CCA 72 bp AATCTCCCAAAGATTCTGAACATGGTAAAAGGTGGTTaGCAAGTAAATACCAGGATGGGCACACTTGATGTC +
Preference number: 3 (lower is better)
Translates to: NLPKILNMVKGG*QVNTRMGTLDV
Trigger: GACATCAAGTGTGCCCATCCTGGTATTTACTTGCCAACCACCTTTTACCATGTTCAGAATCTTTGGGAGATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR-3UTR CAA 90 bp GGAATGCCCACAAAGACAAATCAAACATTAAGCGATACAGTGATTAAACGCATGAAGCGAAAGAGATTTTaGTTCAGCTTGTGGAAAAGG +
Preference number: 3 (lower is better)
Translates to: GMPTKTNQTLSDTVIKRMKRKRF*FSLWKR
Trigger: CCTTTTCCACAAGCTGAACAAAAATCTCTTTCGCTT...CATGCGTTTAATCACTGTATCGCTTAATGTTTGATTTGTCTTTGTGGGCATTCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR TCA 72 bp TGTGGACACGATTCATCTATATGGCTCATTTCCATCTaGGACTTAAAATGTAACCTTAGATTCCCTCTGTCA +
Preference number: 3 (lower is better)
Translates to: CGHDSSIWLISI*DLKCNLRFPLS
Trigger: TGACAGAGGGAATCTAAGGTTACATTTTAAGTCTCAGATGGAAATGAGCCATATAGATGAATCGTGTCCACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR CCA 72 bp ATAGTGTGTTGGTCATTACAAGTCCATGCTTGTAGTTaGAATGCCCACAAAGACAAATCAAACATTAAGCGA +
Preference number: 3 (lower is better)
Translates to: IVCWSLQVHACS*NAHKDKSNIKR
Trigger: TCGCTTAATGTTTGATTTGTCTTTGTGGGCATTCCAACTACAAGCATGGACTTGTAATGACCAACACACTAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR GCA 72 bp TTGAATGAACTCAGCATGTCTTTAAGACATCTGCTTTaGGAAATAGGGTATTTTGTCTTTGGGTTTCAGCTA +
Preference number: 3 (lower is better)
Translates to: LNELSMSLRHLL*EIGYFVFGFQL
Trigger: TAGCTGAAACCCAAAGACAAAATACCCTATTTCGCAAAGCAGATGTCTTAAAGACATGCTGAGTTCATTCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR CCA 72 bp TACAAATGCGTATATCCTGGATATAAAATAGTGTGTTaGTCATTACAAGTCCATGCTTGTAGTTGGAATGCC +
Preference number: 3 (lower is better)
Translates to: YKCVYPGYKIVC*SLQVHACSWNA
Trigger: GGCATTCCAACTACAAGCATGGACTTGTAATGACCAACACACTATTTTATATCCAGGATATACGCATTTGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR GCA 72 bp ATAGAATTGTGGTTTGAAGCGTCATCATTAAACAGTTaGATAGCAACAAAAGGATACAAATCTTCTCCTCTA +
Preference number: 3 (lower is better)
Translates to: IELWFEASSLNS*IATKGYKSSPL
Trigger: TAGAGGAGAAGATTTGTATCCTTTTGTTGCTATGCAACTGTTTAATGATGACGCTTCAAACCACAATTCTAT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp TTGAATTTACTAACCTCTGGTAGCATCACAGGGCTTCCTCCTGCTCATTGCCTGTGCTGGTCGATCCGCTaGCGCTGCTTGGGGACCGAC +
Preference number: 4 (lower is better)
Translates to: LNLLTSGSITGLPPAHCLCWSIR*RCLGTD
Trigger: GTCGGTCCCCAAGCAGCGCCAGCGGATCGACCAGCA...CAGGCAATGAGCAGGAGGAAGCCCTGTGATGCTACCAGAGGTTAGTAAATTCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp ATAGTGACTTTCCAGAGAAGGTATCGTACTGGCTCATGGAGTGCTAGTCCCCCTAGCTTCCGGGCTCTCTaGCTGGGGGAGATCCTCACA +
Preference number: 4 (lower is better)
Translates to: IVTFQRRYRTGSWSASPPSFRAL*LGEILT
Trigger: TGTGAGGATCTCCCCCAGCCAGAGAGCCCGGAAGCT...AGGGGGACTAGCACTCCATGAGCCAGTACGATACCTTCTCTGGAAAGTCACTAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp ATAGTGACTTTCCAGAGAAGGTATCGTACTGGCTCATGGAGTGCTAGTCCCCCTGGGAAGTGGTCTGCGTaGTGGCATTTCCACCCGAGG +
Preference number: 4 (lower is better)
Translates to: IVTFQRRYRTGSWSASPPGKWSA*WHFHPR
Trigger: CCTCGGGTGGAAATGCCACCACGCAGACCACTTCCC...AGGGGGACTAGCACTCCATGAGCCAGTACGATACCTTCTCTGGAAAGTCACTAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR GCA 90 bp ATAGTGACTTTCCAGAGAAGGTATCGTACTGGCTCATGGAGTGCTAGTCCCCCTGCTGAGCATGGTCCATaGCTGGGAGGTAGAGATGGC +
Preference number: 4 (lower is better)
Translates to: IVTFQRRYRTGSWSASPPAEHGP*LGGRDG
Trigger: GCCATCTCTACCTCCCAGGCATGGACCATGCTCAGC...AGGGGGACTAGCACTCCATGAGCCAGTACGATACCTTCTCTGGAAAGTCACTAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp ATAGTGACTTTCCAGAGAAGGTATCGTACTGGCTCATGGAGTGCTAGTCCCCCTGACAACTCTGTTTCTTaGGCATCAGCCCCGCGTGCG +
Preference number: 4 (lower is better)
Translates to: IVTFQRRYRTGSWSASPPDNSVS*ASAPRA
Trigger: CGCACGCGGGGCTGATGCCCAAGAAACAGAGTTGTC...AGGGGGACTAGCACTCCATGAGCCAGTACGATACCTTCTCTGGAAAGTCACTAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp ATAGTGACTTTCCAGAGAAGGTATCGTACTGGCTCATGGAGTGCTAGTCCCCCTCTGGTAGTGGGCAGCTaGAAAGGCTGCATAGCCAGG +
Preference number: 4 (lower is better)
Translates to: IVTFQRRYRTGSWSASPPLVVGS*KGCIAR
Trigger: CCTGGCTATGCAGCCTTTCCAGCTGCCCACTACCAG...AGGGGGACTAGCACTCCATGAGCCAGTACGATACCTTCTCTGGAAAGTCACTAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR CAA 72 bp ATGCCTGTGGTTATGCTTGCCTCTAGCATCACGCATTaGCAGCATGAGTGGTCAGGGGAAGCTCCTATGGAG +
Preference number: 4 (lower is better)
Translates to: MPVVMLASSITH*QHEWSGEAPME
Trigger: CTCCATAGGAGCTTCCCCTGACCACTCATGCTGCAAATGCGTGATGCTAGAGGCAAGCATAACCACAGGCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR TCA 90 bp ATAGTGACTTTCCAGAGAAGGTATCGTACTGGCTCATGGAGTGCTAGTCCCCCTCCAGCGGATGGGCAGTaGAGACTTACTCTGTACCCT +
Preference number: 4 (lower is better)
Translates to: IVTFQRRYRTGSWSASPPPADGQ*RLTLYP
Trigger: AGGGTACAGAGTAAGTCTTCACTGCCCATCCGCTGG...AGGGGGACTAGCACTCCATGAGCCAGTACGATACCTTCTCTGGAAAGTCACTAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR GCA 90 bp AACGCATGCAGTGAGGCTAAAGGAGGATATGGTAATGGGAACTACCTGAACACTTCTGGTTGCCAGGGTTaGGGCAGTAGGAGTGGCCTC +
Preference number: 4 (lower is better)
Translates to: NACSEAKGGYGNGNYLNTSGCQG*GSRSGL
Trigger: GAGGCCACTCCTACTGCCGCAACCCTGGCAACCAGA...AGTGTTCAGGTAGTTCCCATTACCATATCCTCCTTTAGCCTCACTGCATGCGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR GCA 90 bp CTTTGCGAAATAGGGTATTTTGTCTTTGGGTTTCAGCTAGCTCCACGAATAACGTGGCCACATGGCCAGTaGTGGTCGATCCGCTGGCGC +
Preference number: 4 (lower is better)
Translates to: LCEIGYFVFGFQLAPRITWPHGQ*WSIRWR
Trigger: GCGCCAGCGGATCGACCAGCACTGGCCATGTGGCCA...CGTTATTCGTGGAGCTAGCTGAAACCCAAAGACAAAATACCCTATTTCGCAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp CTTTGCGAAATAGGGTATTTTGTCTTTGGGTTTCAGCTAGCTCCACGAATAACGTCCGCTGGCGCTGCTTaGGGACCGACTCTTCGGAGG +
Preference number: 4 (lower is better)
Translates to: LCEIGYFVFGFQLAPRITSAGAA*GPTLRR
Trigger: CCTCCGAAGAGTCGGTCCCCAAGCAGCGCCAGCGGA...CGTTATTCGTGGAGCTAGCTGAAACCCAAAGACAAAATACCCTATTTCGCAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp TTGAATTTACTAACCTCTGGTAGCATCACAGGGCTTCCTCCTGCTCATTGCCTGGCCGAGAGCCATAGTTaGTTGCCCGGAAGGAGATTC +
Preference number: 4 (lower is better)
Translates to: LNLLTSGSITGLPPAHCLAESHS*LPGRRF
Trigger: GAATCTCCTTCCGGGCAACCAACTATGGCTCTCGGC...CAGGCAATGAGCAGGAGGAAGCCCTGTGATGCTACCAGAGGTTAGTAAATTCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp AACGCATGCAGTGAGGCTAAAGGAGGATATGGTAATGGGAACTACCTGAACACTTCCGGGCTCTCTGGCTaGGGGAGATCCTCACAGTTT +
Preference number: 4 (lower is better)
Translates to: NACSEAKGGYGNGNYLNTSGLSG*GRSSQF
Trigger: AAACTGTGAGGATCTCCCCCAGCCAGAGAGCCCGGA...AGTGTTCAGGTAGTTCCCATTACCATATCCTCCTTTAGCCTCACTGCATGCGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp ACATATCATACACCCAGATGGAGTGTAAATCCCACAATGCGTCCTATTTCCTGGCACACAGGTTGTTCCTaGGTGACGGCTCCGAGGAGG +
Preference number: 4 (lower is better)
Translates to: TYHTPRWSVNPTMRPISWHTGCS*VTAPRR
Trigger: CCTCCTCGGAGCCGTCACCCAGGAACAACCTGTGTG...CCAGGAAATAGGACGCATTGTGGGATTTACACTCCATCTGGGTGTATGATATGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp ATAGTGACTTTCCAGAGAAGGTATCGTACTGGCTCATGGAGTGCTAGTCCCCCTGTGTGCCCATGGATATaGGAGTCCCCAAGCAAAGAC +
Preference number: 4 (lower is better)
Translates to: IVTFQRRYRTGSWSASPPVCPWI*ESPSKD
Trigger: GTCTTTGCTTGGGGACTCCCATATCCATGGGCACAC...AGGGGGACTAGCACTCCATGAGCCAGTACGATACCTTCTCTGGAAAGTCACTAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR GCA 90 bp ACATATCATACACCCAGATGGAGTGTAAATCCCACAATGCGTCCTATTTCCTGGCTGAGGGAAGTGGTCTaGGTGGTGGCATTTCCACCC +
Preference number: 4 (lower is better)
Translates to: TYHTPRWSVNPTMRPISWLREVV*VVAFPP
Trigger: GGGTGGAAATGCCACCACGCAGACCACTTCCCTCAG...CCAGGAAATAGGACGCATTGTGGGATTTACACTCCATCTGGGTGTATGATATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR GCA 90 bp TGGTCATTACAAGTCCATGCTTGTAGTTGGAATGCCCACAAAGACAAATCAAACTCGATCCGCTGGCGCTaGTTGGGGACCGACTCTTCG +
Preference number: 4 (lower is better)
Translates to: WSLQVHACSWNAHKDKSNSIRWR*LGTDSS
Trigger: CGAAGAGTCGGTCCCCAAGCAGCGCCAGCGGATCGA...GTTTGATTTGTCTTTGTGGGCATTCCAACTACAAGCATGGACTTGTAATGACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp CAGTTTTCAGTCCTTGAAATAAATGGTCTGTTCCCAACAACATATCATACACCCCCACATGGCCAGTGCTaGTCGATCCGCTGGCGCTGC +
Preference number: 4 (lower is better)
Translates to: QFSVLEINGLFPTTYHTPPHGQC*SIRWRC
Trigger: GCAGCGCCAGCGGATCGACCAGCACTGGCCATGTGG...GGGTGTATGATATGTTGTTGGGAACAGACCATTTATTTCAAGGACTGAAAACTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR TCA 90 bp AACGCATGCAGTGAGGCTAAAGGAGGATATGGTAATGGGAACTACCTGAACACTGAGGAGGCCCAAATTTaGCAAACAGGACACCAGTGG +
Preference number: 4 (lower is better)
Translates to: NACSEAKGGYGNGNYLNTEEAQI*QTGHQW
Trigger: CCACTGGTGTCCTGTTTGTCAAATTTGGGCCTCCTC...AGTGTTCAGGTAGTTCCCATTACCATATCCTCCTTTAGCCTCACTGCATGCGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR TCA 90 bp TTGAATTTACTAACCTCTGGTAGCATCACAGGGCTTCCTCCTGCTCATTGCCTGATGCCTCGGTACGGCTaGCAGAATCCATCTTCTTCA +
Preference number: 4 (lower is better)
Translates to: LNLLTSGSITGLPPAHCLMPRYG*QNPSSS
Trigger: TGAAGAAGATGGATTCTGTCAGCCGTACCGAGGCAT...CAGGCAATGAGCAGGAGGAAGCCCTGTGATGCTACCAGAGGTTAGTAAATTCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR TCA 90 bp ACATATCATACACCCAGATGGAGTGTAAATCCCACAATGCGTCCTATTTCCTGGGGTCCAGGCTGGATTTaGCCGTCCCATCTTCATCAC +
Preference number: 4 (lower is better)
Translates to: TYHTPRWSVNPTMRPISWGPGWI*PSHLHH
Trigger: GTGATGAAGATGGGACGGTCAAATCCAGCCTGGACC...CCAGGAAATAGGACGCATTGTGGGATTTACACTCCATCTGGGTGTATGATATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR TCA 90 bp TTGCATAGCAACAAAAGGATACAAATCTTCTCCTCTACTCCACTTCAAGAAATGGGAGGTGGGCAGTGCTaGATCACCCTGGGAGGCCCT +
Preference number: 4 (lower is better)
Translates to: LHSNKRIQIFSSTPLQEMGGGQC*ITLGGP
Trigger: AGGGCCTCCCAGGGTGATTCAGCACTGCCCACCTCC...CATTTCTTGAAGTGGAGTAGAGGAGAAGATTTGTATCCTTTTGTTGCTATGCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR GCA 90 bp CTTTGCGAAATAGGGTATTTTGTCTTTGGGTTTCAGCTAGCTCCACGAATAACGGAGCTTCCTTCTGGTTaGCAGGGTTGCGGCAGTAGG +
Preference number: 4 (lower is better)
Translates to: LCEIGYFVFGFQLAPRITELPSG*QGCGSR
Trigger: CCTACTGCCGCAACCCTGGCAACCAGAAGGAAGCTC...CGTTATTCGTGGAGCTAGCTGAAACCCAAAGACAAAATACCCTATTTCGCAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR GCA 90 bp ATAGTGACTTTCCAGAGAAGGTATCGTACTGGCTCATGGAGTGCTAGTCCCCCTATCATAGATTCGGTGTaGCCATGGATATGGGAGTCC +
Preference number: 4 (lower is better)
Translates to: IVTFQRRYRTGSWSASPPIIDSV*PWIWES
Trigger: GGACTCCCATATCCATGGGCACACCGAATCTATGAT...AGGGGGACTAGCACTCCATGAGCCAGTACGATACCTTCTCTGGAAAGTCACTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp ATAGTGACTTTCCAGAGAAGGTATCGTACTGGCTCATGGAGTGCTAGTCCCCCTATGATGAGGAACTCGTaGAGGTCTCCCTGGTTCATA +
Preference number: 4 (lower is better)
Translates to: IVTFQRRYRTGSWSASPPMMRNS*RSPWFI
Trigger: TATGAACCAGGGAGACCTCCACGAGTTCCTCATCAT...AGGGGGACTAGCACTCCATGAGCCAGTACGATACCTTCTCTGGAAAGTCACTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp TTGAATTTACTAACCTCTGGTAGCATCACAGGGCTTCCTCCTGCTCATTGCCTGCGTTTGCTTCCTGATTaGATCCTGATGAGGGCAAGC +
Preference number: 4 (lower is better)
Translates to: LNLLTSGSITGLPPAHCLRLLPD*ILMRAS
Trigger: GCTTGCCCTCATCAGGATCCAATCAGGAAGCAAACG...CAGGCAATGAGCAGGAGGAAGCCCTGTGATGCTACCAGAGGTTAGTAAATTCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR TCA 90 bp TTGAATTTACTAACCTCTGGTAGCATCACAGGGCTTCCTCCTGCTCATTGCCTGAAGGCAGCTGTGATCTaGTTTTCTATTTCCCCCTGC +
Preference number: 4 (lower is better)
Translates to: LNLLTSGSITGLPPAHCLKAAVI*FSISPC
Trigger: GCAGGGGGAAATAGAAAATCAGATCACAGCTGCCTT...CAGGCAATGAGCAGGAGGAAGCCCTGTGATGCTACCAGAGGTTAGTAAATTCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR TCA 90 bp AACGCATGCAGTGAGGCTAAAGGAGGATATGGTAATGGGAACTACCTGAACACTCACCCAATTCTTCCATaGAACGCACAGCGGAAAGAG +
Preference number: 4 (lower is better)
Translates to: NACSEAKGGYGNGNYLNTHPILP*NAQRKE
Trigger: CTCTTTCCGCTGTGCGTTTCATGGAAGAATTGGGTG...AGTGTTCAGGTAGTTCCCATTACCATATCCTCCTTTAGCCTCACTGCATGCGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR TCA 90 bp AACGCATGCAGTGAGGCTAAAGGAGGATATGGTAATGGGAACTACCTGAACACTAGAGAGGCTTCCTGTTaGAATTCTGTCCACTGCTGG +
Preference number: 4 (lower is better)
Translates to: NACSEAKGGYGNGNYLNTREASC*NSVHCW
Trigger: CCAGCAGTGGACAGAATTTCAACAGGAAGCCTCTCT...AGTGTTCAGGTAGTTCCCATTACCATATCCTCCTTTAGCCTCACTGCATGCGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR TCA 90 bp GGAATGCCCACAAAGACAAATCAAACATTAAGCGATACAGTGATTAAACGCATGAGAGCTGGTGTGACTTaGGAGGCCCTCCCAGGATCG +
Preference number: 4 (lower is better)
Translates to: GMPTKTNQTLSDTVIKRMRAGVT*EALPGS
Trigger: CGATCCTGGGAGGGCCTCTCAAGTCACACCAGCTCT...CATGCGTTTAATCACTGTATCGCTTAATGTTTGATTTGTCTTTGTGGGCATTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR TCA 90 bp TTGCATAGCAACAAAAGGATACAAATCTTCTCCTCTACTCCACTTCAAGAAATGTCACAGGGCTGGCACTaGGGGAAGTGGTCTGCGTGG +
Preference number: 4 (lower is better)
Translates to: LHSNKRIQIFSSTPLQEMSQGWH*GKWSAW
Trigger: CCACGCAGACCACTTCCCTCAGTGCCAGCCCTGTGA...CATTTCTTGAAGTGGAGTAGAGGAGAAGATTTGTATCCTTTTGTTGCTATGCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR TCA 90 bp ACATATCATACACCCAGATGGAGTGTAAATCCCACAATGCGTCCTATTTCCTGGATGAAACCAGCGATCTaGCCCTGGGGTGTAATCCCT +
Preference number: 4 (lower is better)
Translates to: TYHTPRWSVNPTMRPISWMKPAI*PWGVIP
Trigger: AGGGATTACACCCCAGGGTCAGATCGCTGGTTTCAT...CCAGGAAATAGGACGCATTGTGGGATTTACACTCCATCTGGGTGTATGATATGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR TCA 90 bp ACATATCATACACCCAGATGGAGTGTAAATCCCACAATGCGTCCTATTTCCTGGGGAACGTTTGCTTCCTaGTTGGATCCTGATGAGGGC +
Preference number: 4 (lower is better)
Translates to: TYHTPRWSVNPTMRPISWGTFAS*LDPDEG
Trigger: GCCCTCATCAGGATCCAATCAGGAAGCAAACGTTCC...CCAGGAAATAGGACGCATTGTGGGATTTACACTCCATCTGGGTGTATGATATGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR GCA 90 bp ACATATCATACACCCAGATGGAGTGTAAATCCCACAATGCGTCCTATTTCCTGGATCGTGCACATGCAATaGCTCGGTACGGCTGACAGA +
Preference number: 4 (lower is better)
Translates to: TYHTPRWSVNPTMRPISWIVHMQ*LGTADR
Trigger: TCTGTCAGCCGTACCGAGGCATTGCATGTGCACGAT...CCAGGAAATAGGACGCATTGTGGGATTTACACTCCATCTGGGTGTATGATATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp TGGTCATTACAAGTCCATGCTTGTAGTTGGAATGCCCACAAAGACAAATCAAACTCCTCTGACGGGTTTTaGCTGCCTCTGGACTGGTGG +
Preference number: 4 (lower is better)
Translates to: WSLQVHACSWNAHKDKSNSSDGF*LPLDWW
Trigger: CCACCAGTCCAGAGGCAGCCAAAACCCGTCAGAGGA...GTTTGATTTGTCTTTGTGGGCATTCCAACTACAAGCATGGACTTGTAATGACCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp ATAGTGACTTTCCAGAGAAGGTATCGTACTGGCTCATGGAGTGCTAGTCCCCCTTGTAAGAAATCACCATaGTCCAGGCTGGATTTGACC +
Preference number: 4 (lower is better)
Translates to: IVTFQRRYRTGSWSASPPCKKSP*SRLDLT
Trigger: GGTCAAATCCAGCCTGGACCATGGTGATTTCTTACA...AGGGGGACTAGCACTCCATGAGCCAGTACGATACCTTCTCTGGAAAGTCACTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR TCA 90 bp TGGTCATTACAAGTCCATGCTTGTAGTTGGAATGCCCACAAAGACAAATCAAACCAGACTTGGTCACACTaGCGGTTCCCCGGTAGTCTA +
Preference number: 4 (lower is better)
Translates to: WSLQVHACSWNAHKDKSNQTWSH*RFPGSL
Trigger: TAGACTACCGGGGAACCGTCAGTGTGACCAAGTCTG...GTTTGATTTGTCTTTGTGGGCATTCCAACTACAAGCATGGACTTGTAATGACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR GCA 90 bp CCTGAATCTCCCAAAGATTCTGAACATGGTAAAAGGTGGTTGGCAAGTAAATACTGCAGTTCTGCAGTCTaGCCCAGGGACGTTGTGATG +
Preference number: 4 (lower is better)
Translates to: PESPKDSEHGKRWLASKYCSSAV*PRDVVM
Trigger: CATCACAACGTCCCTGGGGCAGACTGCAGAACTGCA...GTATTTACTTGCCAACCACCTTTTACCATGTTCAGAATCTTTGGGAGATTCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR GCA 90 bp CCTGAATCTCCCAAAGATTCTGAACATGGTAAAAGGTGGTTGGCAAGTAAATACCTGACGGGTTTTGGCTaGCTCTGGACTGGTGGTGAT +
Preference number: 4 (lower is better)
Translates to: PESPKDSEHGKRWLASKYLTGFG*LWTGGD
Trigger: ATCACCACCAGTCCAGAGGCAGCCAAAACCCGTCAG...GTATTTACTTGCCAACCACCTTTTACCATGTTCAGAATCTTTGGGAGATTCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR GCA 90 bp ATAGTGACTTTCCAGAGAAGGTATCGTACTGGCTCATGGAGTGCTAGTCCCCCTCTCCAATTAAAATGTTaGGAGCTGCAAGGTCCTTGT +
Preference number: 4 (lower is better)
Translates to: IVTFQRRYRTGSWSASPPLQLKC*ELQGPC
Trigger: ACAAGGACCTTGCAGCTCGCAACATTTTAATTGGAG...AGGGGGACTAGCACTCCATGAGCCAGTACGATACCTTCTCTGGAAAGTCACTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR GCA 90 bp TGGTCATTACAAGTCCATGCTTGTAGTTGGAATGCCCACAAAGACAAATCAAACGGCAGCTGGAAAGGCTaGATAGCCAGGAGGTATTGG +
Preference number: 4 (lower is better)
Translates to: WSLQVHACSWNAHKDKSNGSWKG*IARRYW
Trigger: CCAATACCTCCTGGCTATGCAGCCTTTCCAGCTGCC...GTTTGATTTGTCTTTGTGGGCATTCCAACTACAAGCATGGACTTGTAATGACCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp ATAGTGACTTTCCAGAGAAGGTATCGTACTGGCTCATGGAGTGCTAGTCCCCCTCACTTATCAGATAAATaGCTGGAGGTGCCAATCATG +
Preference number: 4 (lower is better)
Translates to: IVTFQRRYRTGSWSASPPHLSDK*LEVPIM
Trigger: CATGATTGGCACCTCCAGCCATTTATCTGATAAGTG...AGGGGGACTAGCACTCCATGAGCCAGTACGATACCTTCTCTGGAAAGTCACTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp ACATATCATACACCCAGATGGAGTGTAAATCCCACAATGCGTCCTATTTCCTGGGGCACAAGGAAGGGATaGCGAACTGAGAGCACTTAT +
Preference number: 4 (lower is better)
Translates to: TYHTPRWSVNPTMRPISWGTRKG*RTESTY
Trigger: ATAAGTGCTCTCAGTTCGCCATCCCTTCCTTGTGCC...CCAGGAAATAGGACGCATTGTGGGATTTACACTCCATCTGGGTGTATGATATGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp TTGCATAGCAACAAAAGGATACAAATCTTCTCCTCTACTCCACTTCAAGAAATGCAGGGAGCTTCCTTCTaGTTGCCAGGGTTGCGGCAG +
Preference number: 4 (lower is better)
Translates to: LHSNKRIQIFSSTPLQEMQGASF*LPGLRQ
Trigger: CTGCCGCAACCCTGGCAACCAGAAGGAAGCTCCCTG...CATTTCTTGAAGTGGAGTAGAGGAGAAGATTTGTATCCTTTTGTTGCTATGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp CTTTGCGAAATAGGGTATTTTGTCTTTGGGTTTCAGCTAGCTCCACGAATAACGGGTTTTGGCTGCCTCTaGACTGGTGGTGATGAAGAC +
Preference number: 4 (lower is better)
Translates to: LCEIGYFVFGFQLAPRITGFGCL*TGGDED
Trigger: GTCTTCATCACCACCAGTCCAGAGGCAGCCAAAACC...CGTTATTCGTGGAGCTAGCTGAAACCCAAAGACAAAATACCCTATTTCGCAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp TGGTCATTACAAGTCCATGCTTGTAGTTGGAATGCCCACAAAGACAAATCAAACAGCATGGTCCATGCCTaGGAGGTAGAGATGGCCCTT +
Preference number: 4 (lower is better)
Translates to: WSLQVHACSWNAHKDKSNSMVHA*EVEMAL
Trigger: AAGGGCCATCTCTACCTCCCAGGCATGGACCATGCT...GTTTGATTTGTCTTTGTGGGCATTCCAACTACAAGCATGGACTTGTAATGACCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp TGGTCATTACAAGTCCATGCTTGTAGTTGGAATGCCCACAAAGACAAATCAAACGGGGCATCCAGCGGATaGGCAGTGAAGACTTACTCT +
Preference number: 4 (lower is better)
Translates to: WSLQVHACSWNAHKDKSNGASSG*AVKTYS
Trigger: AGAGTAAGTCTTCACTGCCCATCCGCTGGATGCCCC...GTTTGATTTGTCTTTGTGGGCATTCCAACTACAAGCATGGACTTGTAATGACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp TTGAATTTACTAACCTCTGGTAGCATCACAGGGCTTCCTCCTGCTCATTGCCTGATAGCCAGGAGGTATTaGGTATCCATTGATGGGGAT +
Preference number: 4 (lower is better)
Translates to: LNLLTSGSITGLPPAHCLIARRY*VSIDGD
Trigger: ATCCCCATCAATGGATACCCAATACCTCCTGGCTAT...CAGGCAATGAGCAGGAGGAAGCCCTGTGATGCTACCAGAGGTTAGTAAATTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp GGAATGCCCACAAAGACAAATCAAACATTAAGCGATACAGTGATTAAACGCATGCCGACTCTTCGGAGGTaGGCAGTGCTGAATCACCCT +
Preference number: 4 (lower is better)
Translates to: GMPTKTNQTLSDTVIKRMPTLRR*AVLNHP
Trigger: AGGGTGATTCAGCACTGCCCACCTCCGAAGAGTCGG...CATGCGTTTAATCACTGTATCGCTTAATGTTTGATTTGTCTTTGTGGGCATTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp TTGCATAGCAACAAAAGGATACAAATCTTCTCCTCTACTCCACTTCAAGAAATGCTGATGAGGGCAAGCTaGCCACATGGCCAGTGCTGG +
Preference number: 4 (lower is better)
Translates to: LHSNKRIQIFSSTPLQEMLMRAS*PHGQCW
Trigger: CCAGCACTGGCCATGTGGCCAGCTTGCCCTCATCAG...CATTTCTTGAAGTGGAGTAGAGGAGAAGATTTGTATCCTTTTGTTGCTATGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR TCA 90 bp TGGTCATTACAAGTCCATGCTTGTAGTTGGAATGCCCACAAAGACAAATCAAACCAGCTCAGCACTGACTaGCAACTCTGTTTCTTGGGC +
Preference number: 4 (lower is better)
Translates to: WSLQVHACSWNAHKDKSNQLSTD*QLCFLG
Trigger: GCCCAAGAAACAGAGTTGTCAGTCAGTGCTGAGCTG...GTTTGATTTGTCTTTGTGGGCATTCCAACTACAAGCATGGACTTGTAATGACCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR TCA 90 bp GGAATGCCCACAAAGACAAATCAAACATTAAGCGATACAGTGATTAAACGCATGGGGCTTTGGGACAGATaGGGTTTCGTCACAGTACGG +
Preference number: 4 (lower is better)
Translates to: GMPTKTNQTLSDTVIKRMGLWDR*GFVTVR
Trigger: CCGTACTGTGACGAAACCTCATCTGTCCCAAAGCCC...CATGCGTTTAATCACTGTATCGCTTAATGTTTGATTTGTCTTTGTGGGCATTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR TCA 90 bp TTGCATAGCAACAAAAGGATACAAATCTTCTCCTCTACTCCACTTCAAGAAATGTTGATAGCCACCAGCTaGGCATGGTCCATGCCTGGG +
Preference number: 4 (lower is better)
Translates to: LHSNKRIQIFSSTPLQEMLIATS*AWSMPG
Trigger: CCCAGGCATGGACCATGCTCAGCTGGTGGCTATCAA...CATTTCTTGAAGTGGAGTAGAGGAGAAGATTTGTATCCTTTTGTTGCTATGCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR GCA 90 bp CAGTTTTCAGTCCTTGAAATAAATGGTCTGTTCCCAACAACATATCATACACCCTTTGCAGTGCAGTTCTaGAGTCTGCCCCAGGGACGT +
Preference number: 4 (lower is better)
Translates to: QFSVLEINGLFPTTYHTPFAVQF*SLPQGR
Trigger: ACGTCCCTGGGGCAGACTGCAGAACTGCACTGCAAA...GGGTGTATGATATGTTGTTGGGAACAGACCATTTATTTCAAGGACTGAAAACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR GCA 90 bp AACGCATGCAGTGAGGCTAAAGGAGGATATGGTAATGGGAACTACCTGAACACTGTTGCCAATAAATCGTaGACATGCAATGCCTCGGTA +
Preference number: 4 (lower is better)
Translates to: NACSEAKGGYGNGNYLNTVANKS*TCNASV
Trigger: TACCGAGGCATTGCATGTGCACGATTTATTGGCAAC...AGTGTTCAGGTAGTTCCCATTACCATATCCTCCTTTAGCCTCACTGCATGCGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR GCA 90 bp TGGTCATTACAAGTCCATGCTTGTAGTTGGAATGCCCACAAAGACAAATCAAACAATCCGTATGCAGTTTaGAGCTTCCGGGCTCTCTGG +
Preference number: 4 (lower is better)
Translates to: WSLQVHACSWNAHKDKSNNPYAV*SFRALW
Trigger: CCAGAGAGCCCGGAAGCTGCAAACTGCATACGGATT...GTTTGATTTGTCTTTGTGGGCATTCCAACTACAAGCATGGACTTGTAATGACCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp GGAATGCCCACAAAGACAAATCAAACATTAAGCGATACAGTGATTAAACGCATGTTCCATGGCTGGCACTaGCGTCCAGACTTGGTCACA +
Preference number: 4 (lower is better)
Translates to: GMPTKTNQTLSDTVIKRMFHGWH*RPDLVT
Trigger: TGTGACCAAGTCTGGACGCCAGTGCCAGCCATGGAA...CATGCGTTTAATCACTGTATCGCTTAATGTTTGATTTGTCTTTGTGGGCATTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR TCA 90 bp CAGTTTTCAGTCCTTGAAATAAATGGTCTGTTCCCAACAACATATCATACACCCTGTGTGTGTGGGTACTaGGAATTCCATGGCTGGCAC +
Preference number: 4 (lower is better)
Translates to: QFSVLEINGLFPTTYHTPCVCGY*EFHGWH
Trigger: GTGCCAGCCATGGAATTCTCAGTACCCACACACACA...GGGTGTATGATATGTTGTTGGGAACAGACCATTTATTTCAAGGACTGAAAACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR TCA 90 bp CTTTGCGAAATAGGGTATTTTGTCTTTGGGTTTCAGCTAGCTCCACGAATAACGTTGTGCACGAAGAAGTaGCTAGACAGGTACTCCATG +
Preference number: 4 (lower is better)
Translates to: LCEIGYFVFGFQLAPRITLCTKK*LDRYSM
Trigger: CATGGAGTACCTGTCTAGTCACTTCTTCGTGCACAA...CGTTATTCGTGGAGCTAGCTGAAACCCAAAGACAAAATACCCTATTTCGCAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR TCA 90 bp TGGTCATTACAAGTCCATGCTTGTAGTTGGAATGCCCACAAAGACAAATCAAACCCCATTCCACCAGGGTaGTTTGGAATTGACATGTGG +
Preference number: 4 (lower is better)
Translates to: WSLQVHACSWNAHKDKSNPIPPG*FGIDMW
Trigger: CCACATGTCAATTCCAAATCACCCTGGTGGAATGGG...GTTTGATTTGTCTTTGTGGGCATTCCAACTACAAGCATGGACTTGTAATGACCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR GCA 90 bp CTTTGCGAAATAGGGTATTTTGTCTTTGGGTTTCAGCTAGCTCCACGAATAACGTTCTTGGACCACAGGTaGATCATTCTTGAACCAGCG +
Preference number: 4 (lower is better)
Translates to: LCEIGYFVFGFQLAPRITFLDHR*IILEPA
Trigger: CGCTGGTTCAAGAATGATGCACCTGTGGTCCAAGAA...CGTTATTCGTGGAGCTAGCTGAAACCCAAAGACAAAATACCCTATTTCGCAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR GCA 90 bp TGGTCATTACAAGTCCATGCTTGTAGTTGGAATGCCCACAAAGACAAATCAAACGATCCGCCATGGGAATaGCAATCCGTATGCAGTTTG +
Preference number: 4 (lower is better)
Translates to: WSLQVHACSWNAHKDKSNDPPWE*QSVCSL
Trigger: CAAACTGCATACGGATTGGCATTCCCATGGCGGATC...GTTTGATTTGTCTTTGTGGGCATTCCAACTACAAGCATGGACTTGTAATGACCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp ACATATCATACACCCAGATGGAGTGTAAATCCCACAATGCGTCCTATTTCCTGGTTTGGAATCACATGCTaGGATGTCACACAGGTCAGA +
Preference number: 4 (lower is better)
Translates to: TYHTPRWSVNPTMRPISWFGITC*DVTQVR
Trigger: TCTGACCTGTGTGACATCCCAGCATGTGATTCCAAA...CCAGGAAATAGGACGCATTGTGGGATTTACACTCCATCTGGGTGTATGATATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp CCTGAATCTCCCAAAGATTCTGAACATGGTAAAAGGTGGTTGGCAAGTAAATACGATCGAAGCCGGACGTaGATGTCTTTAAAGCGTGGT +
Preference number: 4 (lower is better)
Translates to: PESPKDSEHGKRWLASKYDRSRT*MSLKRG
Trigger: ACCACGCTTTAAAGACATCCACGTCCGGCTTCGATC...GTATTTACTTGCCAACCACCTTTTACCATGTTCAGAATCTTTGGGAGATTCAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp TGGTCATTACAAGTCCATGCTTGTAGTTGGAATGCCCACAAAGACAAATCAAACGTTCTGAGGTATCGCTaGGCCAATGAAACCAGCGAT +
Preference number: 4 (lower is better)
Translates to: WSLQVHACSWNAHKDKSNVLRYR*ANETSD
Trigger: ATCGCTGGTTTCATTGGCCCAGCGATACCTCAGAAC...GTTTGATTTGTCTTTGTGGGCATTCCAACTACAAGCATGGACTTGTAATGACCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR TCA 90 bp CCTGAATCTCCCAAAGATTCTGAACATGGTAAAAGGTGGTTGGCAAGTAAATACTGGGCTTGTATGCATTaGGCATGGACATCTCCACAT +
Preference number: 4 (lower is better)
Translates to: PESPKDSEHGKRWLASKYWACMH*AWTSPH
Trigger: ATGTGGAGATGTCCATGCTCAATGCATACAAGCCCA...GTATTTACTTGCCAACCACCTTTTACCATGTTCAGAATCTTTGGGAGATTCAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR GCA 90 bp CCTGAATCTCCCAAAGATTCTGAACATGGTAAAAGGTGGTTGGCAAGTAAATACTCCCATCTTCATCACTaGTACAGCCGACATCGGAAT +
Preference number: 4 (lower is better)
Translates to: PESPKDSEHGKRWLASKYSHLHH*YSRHRN
Trigger: ATTCCGATGTCGGCTGTAGCAGTGATGAAGATGGGA...GTATTTACTTGCCAACCACCTTTTACCATGTTCAGAATCTTTGGGAGATTCAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR GCA 90 bp TGGTCATTACAAGTCCATGCTTGTAGTTGGAATGCCCACAAAGACAAATCAAACGTACTCCATGCCAGCTaGGATCTGAATTGCTATGTG +
Preference number: 4 (lower is better)
Translates to: WSLQVHACSWNAHKDKSNVLHAS*DLNCYV
Trigger: CACATAGCAATTCAGATCGCAGCTGGCATGGAGTAC...GTTTGATTTGTCTTTGTGGGCATTCCAACTACAAGCATGGACTTGTAATGACCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR GCA 90 bp CAGTTTTCAGTCCTTGAAATAAATGGTCTGTTCCCAACAACATATCATACACCCGAACATGGTAAGAGCTaGCGCTTCCGCACCATTTCA +
Preference number: 4 (lower is better)
Translates to: QFSVLEINGLFPTTYHTPEHGKS*RFRTIS
Trigger: TGAAATGGTGCGGAAGCGGCAGCTCTTACCATGTTC...GGGTGTATGATATGTTGTTGGGAACAGACCATTTATTTCAAGGACTGAAAACTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp TTGCATAGCAACAAAAGGATACAAATCTTCTCCTCTACTCCACTTCAAGAAATGGTACTGAGAATTCCATaGCTGGCACTGGCGTCCAGA +
Preference number: 4 (lower is better)
Translates to: LHSNKRIQIFSSTPLQEMVLRIP*LALASR
Trigger: TCTGGACGCCAGTGCCAGCCATGGAATTCTCAGTAC...CATTTCTTGAAGTGGAGTAGAGGAGAAGATTTGTATCCTTTTGTTGCTATGCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp AACGCATGCAGTGAGGCTAAAGGAGGATATGGTAATGGGAACTACCTGAACACTTCTCTTTGGAATCTTTaGAATCACATGCTGGGATGT +
Preference number: 4 (lower is better)
Translates to: NACSEAKGGYGNGNYLNTSLWNL*NHMLGC
Trigger: ACATCCCAGCATGTGATTCCAAAGATTCCAAAGAGA...AGTGTTCAGGTAGTTCCCATTACCATATCCTCCTTTAGCCTCACTGCATGCGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR TCA 90 bp TTGCATAGCAACAAAAGGATACAAATCTTCTCCTCTACTCCACTTCAAGAAATGGGTGTAGTTCAGCCATaGGAGAGGCTTCCTGTTGAA +
Preference number: 4 (lower is better)
Translates to: LHSNKRIQIFSSTPLQEMGVVQP*ERLPVE
Trigger: TTCAACAGGAAGCCTCTCTCATGGCTGAACTACACC...CATTTCTTGAAGTGGAGTAGAGGAGAAGATTTGTATCCTTTTGTTGCTATGCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp GGAATGCCCACAAAGACAAATCAAACATTAAGCGATACAGTGATTAAACGCATGGGGAATGGCCACACTTaGCACCAGAATGTACAAGAT +
Preference number: 4 (lower is better)
Translates to: GMPTKTNQTLSDTVIKRMGNGHT*HQNVQD
Trigger: ATCTTGTACATTCTGGTGCCAAGTGTGGCCATTCCC...CATGCGTTTAATCACTGTATCGCTTAATGTTTGATTTGTCTTTGTGGGCATTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp CTTTGCGAAATAGGGTATTTTGTCTTTGGGTTTCAGCTAGCTCCACGAATAACGCATACAATATTGGGGTaGTGTAGTTCAGCCATGAGA +
Preference number: 4 (lower is better)
Translates to: LCEIGYFVFGFQLAPRITHTILG*CSSAMR
Trigger: TCTCATGGCTGAACTACACCACCCCAATATTGTATG...CGTTATTCGTGGAGCTAGCTGAAACCCAAAGACAAAATACCCTATTTCGCAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp ACATATCATACACCCAGATGGAGTGTAAATCCCACAATGCGTCCTATTTCCTGGACTAAACCCATAATATaGCTGGAGTCCAAAGCTGAA +
Preference number: 4 (lower is better)
Translates to: TYHTPRWSVNPTMRPISWTKPII*LESKAE
Trigger: TTCAGCTTTGGACTCCAGCCATATTATGGGTTTAGT...CCAGGAAATAGGACGCATTGTGGGATTTACACTCCATCTGGGTGTATGATATGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR TCA 90 bp CAGTTTTCAGTCCTTGAAATAAATGGTCTGTTCCCAACAACATATCATACACCCGAAGGGATGGCGAACTaGGAGCACTTATCAGATAAA +
Preference number: 4 (lower is better)
Translates to: QFSVLEINGLFPTTYHTPEGMAN*EHLSDK
Trigger: TTTATCTGATAAGTGCTCTCAGTTCGCCATCCCTTC...GGGTGTATGATATGTTGTTGGGAACAGACCATTTATTTCAAGGACTGAAAACTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR TCA 90 bp GGAATGCCCACAAAGACAAATCAAACATTAAGCGATACAGTGATTAAACGCATGAAAATGTACTCTGTCTaGCACAGGACATTCTCCAGC +
Preference number: 4 (lower is better)
Translates to: GMPTKTNQTLSDTVIKRMKMYSV*HRTFSS
Trigger: GCTGGAGAATGTCCTGTGTCAGACAGAGTACATTTT...CATGCGTTTAATCACTGTATCGCTTAATGTTTGATTTGTCTTTGTGGGCATTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp TTGCATAGCAACAAAAGGATACAAATCTTCTCCTCTACTCCACTTCAAGAAATGGAAGCTGTGTGTGTGTaGGTACTGAGAATTCCATGG +
Preference number: 4 (lower is better)
Translates to: LHSNKRIQIFSSTPLQEMEAVCV*VLRIPW
Trigger: CCATGGAATTCTCAGTACCCACACACACACAGCTTC...CATTTCTTGAAGTGGAGTAGAGGAGAAGATTTGTATCCTTTTGTTGCTATGCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp CTTTGCGAAATAGGGTATTTTGTCTTTGGGTTTCAGCTAGCTCCACGAATAACGTTTGGAATTGACATGTaGGGTAGCAAAGGAACGTTT +
Preference number: 4 (lower is better)
Translates to: LCEIGYFVFGFQLAPRITFGIDM*GSKGTF
Trigger: AAACGTTCCTTTGCTACCCCACATGTCAATTCCAAA...CGTTATTCGTGGAGCTAGCTGAAACCCAAAGACAAAATACCCTATTTCGCAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp CTTTGCGAAATAGGGTATTTTGTCTTTGGGTTTCAGCTAGCTCCACGAATAACGTCATGGGATTTGATCTaGCAAAAATGTACTCTGTCT +
Preference number: 4 (lower is better)
Translates to: LCEIGYFVFGFQLAPRITSWDLI*QKCTLS
Trigger: AGACAGAGTACATTTTTGCCAGATCAAATCCCATGA...CGTTATTCGTGGAGCTAGCTGAAACCCAAAGACAAAATACCCTATTTCGCAAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
3UTR CAA 72 bp TCACAGCACTGTCTTAATACATTAGAACAAGTGGTTTaGAGATTCAGTCCGCTCACCTTAATGGCTTCAGTT +
Preference number: 4 (lower is better)
Translates to: SQHCLNTLEQVV*RFSPLTLMASV
Trigger: AACTGAAGCCATTAAGGTGAGCGGACTGAATCTCAAAACCACTTGTTCTAATGTATTAAGACAGTGCTGTGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR GCA 90 bp TTGCATAGCAACAAAAGGATACAAATCTTCTCCTCTACTCCACTTCAAGAAATGTTTCTTGCCATTTGTTaGCACACACTGGAAGTAACC +
Preference number: 4 (lower is better)
Translates to: LHSNKRIQIFSSTPLQEMFLAIC*HTLEVT
Trigger: GGTTACTTCCAGTGTGTGGCAACAAATGGCAAGAAA...CATTTCTTGAAGTGGAGTAGAGGAGAAGATTTGTATCCTTTTGTTGCTATGCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR GCA 90 bp CAGTTTTCAGTCCTTGAAATAAATGGTCTGTTCCCAACAACATATCATACACCCATTTCCCCCTGCATATaGAAAGACTCCATATACACA +
Preference number: 4 (lower is better)
Translates to: QFSVLEINGLFPTTYHTPISPCI*KDSIYT
Trigger: TGTGTATATGGAGTCTTTGCATATGCAGGGGGAAAT...GGGTGTATGATATGTTGTTGGGAACAGACCATTTATTTCAAGGACTGAAAACTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CCA 90 bp CCTGAATCTCCCAAAGATTCTGAACATGGTAAAAGGTGGTTGGCAAGTAAATACGCCTCATCAAAATCATaGGATTTGATCTGGCAAAAA +
Preference number: 4 (lower is better)
Translates to: PESPKDSEHGKRWLASKYASSKS*DLIWQK
Trigger: TTTTTGCCAGATCAAATCCCATGATTTTGATGAGGC...GTATTTACTTGCCAACCACCTTTTACCATGTTCAGAATCTTTGGGAGATTCAGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR TCA 90 bp TTGCATAGCAACAAAAGGATACAAATCTTCTCCTCTACTCCACTTCAAGAAATGGGAAAGCCCAAGATCTaGAATTTTTACATGCAGTTG +
Preference number: 4 (lower is better)
Translates to: LHSNKRIQIFSSTPLQEMGKPKI*NFYMQL
Trigger: CAACTGCATGTAAAAATTTCAGATCTTGGGCTTTCC...CATTTCTTGAAGTGGAGTAGAGGAGAAGATTTGTATCCTTTTGTTGCTATGCAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR GCA 90 bp TTGCATAGCAACAAAAGGATACAAATCTTCTCCTCTACTCCACTTCAAGAAATGTTTTCTATTTCCCCCTaGATATGCAAAGACTCCATA +
Preference number: 4 (lower is better)
Translates to: LHSNKRIQIFSSTPLQEMFSISP*ICKDSI
Trigger: TATGGAGTCTTTGCATATGCAGGGGGAAATAGAAAA...CATTTCTTGAAGTGGAGTAGAGGAGAAGATTTGTATCCTTTTGTTGCTATGCAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS GCA 90 bp AGGGCAAGCTGGCCACATGGCCAGTGCTGGTCGATCCGCTGGCGCTaGTTGGGGACCGACTCTTCGGAGGTGGGCAGTGCTGAATCACCC +
Preference number: 5 (lower is better)
Translates to: RASWPHGQCWSIRWR*LGTDSSEVGSAESP
Trigger: GGGTGATTCAGCACTGCCCACCTCCGAAGAGTCGGTCCCCAAGCAGCGCCAGCGGATCGACCAGCACTGGCCATGTGGCCAGCTTGCCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CCA 90 bp CAAGCTGGCCACATGGCCAGTGCTGGTCGATCCGCTGGCGCTGCTTaGGGACCGACTCTTCGGAGGTGGGCAGTGCTGAATCACCCTGGG +
Preference number: 5 (lower is better)
Translates to: QAGHMASAGRSAGAA*GPTLRRWAVLNHPG
Trigger: CCCAGGGTGATTCAGCACTGCCCACCTCCGAAGAGTCGGTCCCCAAGCAGCGCCAGCGGATCGACCAGCACTGGCCATGTGGCCAGCTTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS GCA 90 bp CCGACTCTTCGGAGGTGGGCAGTGCTGAATCACCCTGGGAGGCCCTaGAGGCTGGTAGTGGGCAGCTGGAAAGGCTGCATAGCCAGGAGG +
Preference number: 5 (lower is better)
Translates to: PTLRRWAVLNHPGRP*RLVVGSWKGCIARR
Trigger: CCTCCTGGCTATGCAGCCTTTCCAGCTGCCCACTACCAGCCTGCAGGGCCTCCCAGGGTGATTCAGCACTGCCCACCTCCGAAGAGTCGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CCA 90 bp CTGATGAGGGCAAGCTGGCCACATGGCCAGTGCTGGTCGATCCGCTaGCGCTGCTTGGGGACCGACTCTTCGGAGGTGGGCAGTGCTGAA +
Preference number: 5 (lower is better)
Translates to: LMRASWPHGQCWSIR*RCLGTDSSEVGSAE
Trigger: TTCAGCACTGCCCACCTCCGAAGAGTCGGTCCCCAAGCAGCGCCAGCGGATCGACCAGCACTGGCCATGTGGCCAGCTTGCCCTCATCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CCA 90 bp CCTGATTGGATCCTGATGAGGGCAAGCTGGCCACATGGCCAGTGCTaGTCGATCCGCTGGCGCTGCTTGGGGACCGACTCTTCGGAGGTG +
Preference number: 5 (lower is better)
Translates to: PDWILMRASWPHGQC*SIRWRCLGTDSSEV
Trigger: CACCTCCGAAGAGTCGGTCCCCAAGCAGCGCCAGCGGATCGACCAGCACTGGCCATGTGGCCAGCTTGCCCTCATCAGGATCCAATCAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS GCA 90 bp CTTCCTGATTGGATCCTGATGAGGGCAAGCTGGCCACATGGCCAGTaGTGGTCGATCCGCTGGCGCTGCTTGGGGACCGACTCTTCGGAG +
Preference number: 5 (lower is better)
Translates to: LPDWILMRASWPHGQ*WSIRWRCLGTDSSE
Trigger: CTCCGAAGAGTCGGTCCCCAAGCAGCGCCAGCGGATCGACCAGCACTGGCCATGTGGCCAGCTTGCCCTCATCAGGATCCAATCAGGAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CCA 90 bp GCAAAGGAACGTTTGCTTCCTGATTGGATCCTGATGAGGGCAAGCTaGCCACATGGCCAGTGCTGGTCGATCCGCTGGCGCTGCTTGGGG +
Preference number: 5 (lower is better)
Translates to: AKERLLPDWILMRAS*PHGQCWSIRWRCLG
Trigger: CCCCAAGCAGCGCCAGCGGATCGACCAGCACTGGCCATGTGGCCAGCTTGCCCTCATCAGGATCCAATCAGGAAGCAAACGTTCCTTTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS TCA 90 bp CGTGGTGGCATTTCCACCCGAGGGGGTGGTAGAGCTGGTGTGACTTaGGAGGCCCTCCCAGGATCGAAGCCGGACGTGGATGTCTTTAAA +
Preference number: 5 (lower is better)
Translates to: RGGISTRGGGRAGVT*EALPGSKPDVDVFK
Trigger: TTTAAAGACATCCACGTCCGGCTTCGATCCTGGGAGGGCCTCTCAAGTCACACCAGCTCTACCACCCCCTCGGGTGGAAATGCCACCACG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CCA 90 bp GCGCAGAGCAGTGAAGCTGTGTGTGTGTGGGTACTGAGAATTCCATaGCTGGCACTGGCGTCCAGACTTGGTCACACTGACGGTTCCCCG +
Preference number: 5 (lower is better)
Translates to: AQSSEAVCVWVLRIP*LALASRLGHTDGSP
Trigger: CGGGGAACCGTCAGTGTGACCAAGTCTGGACGCCAGTGCCAGCCATGGAATTCTCAGTACCCACACACACACAGCTTCACTGCTCTGCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CCA 90 bp TCCGTTGAGCTCCGGAAAGCGCAGAGCAGTGAAGCTGTGTGTGTGTaGGTACTGAGAATTCCATGGCTGGCACTGGCGTCCAGACTTGGT +
Preference number: 5 (lower is better)
Translates to: SVELRKAQSSEAVCV*VLRIPWLALASRLG
Trigger: ACCAAGTCTGGACGCCAGTGCCAGCCATGGAATTCTCAGTACCCACACACACACAGCTTCACTGCTCTGCGCTTTCCGGAGCTCAACGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CCA 90 bp AGGCTGGTAGTGGGCAGCTGGAAAGGCTGCATAGCCAGGAGGTATTaGGTATCCATTGATGGGGATGAAGCGCTGGTTCTGAGGTATCGC +
Preference number: 5 (lower is better)
Translates to: RLVVGSWKGCIARRY*VSIDGDEALVLRYR
Trigger: GCGATACCTCAGAACCAGCGCTTCATCCCCATCAATGGATACCCAATACCTCCTGGCTATGCAGCCTTTCCAGCTGCCCACTACCAGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS GCA 90 bp GCGGATACTGGGAGGTGGATTCCCAGACACTTTGCAGTGCAGTTCTaGAGTCTGCCCCAGGGACGTTGTGATGTTATTCATCGGCTCATC +
Preference number: 5 (lower is better)
Translates to: ADTGRWIPRHFAVQF*SLPQGRCDVIHRLI
Trigger: GATGAGCCGATGAATAACATCACAACGTCCCTGGGGCAGACTGCAGAACTGCACTGCAAAGTGTCTGGGAATCCACCTCCCAGTATCCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS GCA 90 bp GTTGGTTGCCCGGAAGGAGATTCTCCGAGGTTCTTGGACCACAGGTaGATCATTCTTGAACCAGCGGATACTGGGAGGTGGATTCCCAGA +
Preference number: 5 (lower is better)
Translates to: VGCPEGDSPRFLDHR*IILEPADTGRWIPR
Trigger: TCTGGGAATCCACCTCCCAGTATCCGCTGGTTCAAGAATGATGCACCTGTGGTCCAAGAACCTCGGAGAATCTCCTTCCGGGCAACCAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS GCA 90 bp TGTGGTGTCAAGGTTTCTAATCCGCAGCCGAGAGCCATAGTTGGTTaGCCGGAAGGAGATTCTCCGAGGTTCTTGGACCACAGGTGCATC +
Preference number: 5 (lower is better)
Translates to: CGVKVSNPQPRAIVG*PEGDSPRFLDHRCI
Trigger: GATGCACCTGTGGTCCAAGAACCTCGGAGAATCTCCTTCCGGGCAACCAACTATGGCTCTCGGCTGCGGATTAGAAACCTTGACACCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CCA 90 bp TGGGTATCCATTGATGGGGATGAAGCGCTGGTTCTGAGGTATCGCTaGGCCAATGAAACCAGCGATCTGACCCTGGGGTGTAATCCCTTG +
Preference number: 5 (lower is better)
Translates to: WVSIDGDEALVLRYR*ANETSDLTLGCNPL
Trigger: CAAGGGATTACACCCCAGGGTCAGATCGCTGGTTTCATTGGCCCAGCGATACCTCAGAACCAGCGCTTCATCCCCATCAATGGATACCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CAA 90 bp AACGCATGCAGTGAGGCTAAAGGAGGATATGGTAATGGGAACTACCTGAACACTCTGAGGATCCTGGGCTaGCGGTCGGAGGAGGCCCAA +
Preference number: 5 (lower is better)
Translates to: NACSEAKGGYGNGNYLNTLRILG*RSEEAQ
Trigger: TTGGGCCTCCTCCGACCGCAAGCCCAGGATCCTCAG...AGTGTTCAGGTAGTTCCCATTACCATATCCTCCTTTAGCCTCACTGCATGCGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS TCA 90 bp CACTTCACATTCATCACGACACAAGTCACGGGGCTTTGGGACAGATaGGGTTTCGTCACAGTACGGGAAGGCGTAGTGGCACAAGGAAGG +
Preference number: 5 (lower is better)
Translates to: HFTFITTQVTGLWDR*GFVTVREGVVAQGR
Trigger: CCTTCCTTGTGCCACTACGCCTTCCCGTACTGTGACGAAACCTCATCTGTCCCAAAGCCCCGTGACTTGTGTCGTGATGAATGTGAAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS TCA 90 bp CGGCTCCGAGGAGGCATACAATATTGGGGTGGTGTAGTTCAGCCATaGGAGAGGCTTCCTGTTGAAATTCTGTCCACTGCTGGGGGTTGT +
Preference number: 5 (lower is better)
Translates to: RLRGGIQYWGGVVQP*ERLPVEILSTAGGC
Trigger: ACAACCCCCAGCAGTGGACAGAATTTCAACAGGAAGCCTCTCTCATGGCTGAACTACACCACCCCAATATTGTATGCCTCCTCGGAGCCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CCA 90 bp TTGGAATTGACATGTGGGGTAGCAAAGGAACGTTTGCTTCCTGATTaGATCCTGATGAGGGCAAGCTGGCCACATGGCCAGTGCTGGTCG +
Preference number: 5 (lower is better)
Translates to: LELTCGVAKERLLPD*ILMRASWPHGQCWS
Trigger: CGACCAGCACTGGCCATGTGGCCAGCTTGCCCTCATCAGGATCCAATCAGGAAGCAAACGTTCCTTTGCTACCCCACATGTCAATTCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS GCA 90 bp TTGAACCAGCGGATACTGGGAGGTGGATTCCCAGACACTTTGCAGTaGAGTTCTGCAGTCTGCCCCAGGGACGTTGTGATGTTATTCATC +
Preference number: 5 (lower is better)
Translates to: LNQRILGGGFPDTLQ*SSAVCPRDVVMLFI
Trigger: GATGAATAACATCACAACGTCCCTGGGGCAGACTGCAGAACTGCACTGCAAAGTGTCTGGGAATCCACCTCCCAGTATCCGCTGGTTCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS GCA 90 bp TTTATTTATAGGATCCGCCATGGGAATGCCAATCCGTATGCAGTTTaGAGCTTCCGGGCTCTCTGGCTGGGGGAGATCCTCACAGTTTGG +
Preference number: 5 (lower is better)
Translates to: FIYRIRHGNANPYAV*SFRALWLGEILTVW
Trigger: CCAAACTGTGAGGATCTCCCCCAGCCAGAGAGCCCGGAAGCTGCAAACTGCATACGGATTGGCATTCCCATGGCGGATCCTATAAATAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS GCA 90 bp TTGAGCATGGACATCTCCACATTCTGTCCTCTGACGGGTTTTGGCTaGCTCTGGACTGGTGGTGATGAAGACTTCTGGTTATTGCGGCAC +
Preference number: 5 (lower is better)
Translates to: LSMDISTFCPLTGFG*LWTGGDEDFWLLRH
Trigger: GTGCCGCAATAACCAGAAGTCTTCATCACCACCAGTCCAGAGGCAGCCAAAACCCGTCAGAGGACAGAATGTGGAGATGTCCATGCTCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CCA 90 bp AGGTTTCGTCACAGTACGGGAAGGCGTAGTGGCACAAGGAAGGGATaGCGAACTGAGAGCACTTATCAGATAAATGGCTGGAGGTGCCAA +
Preference number: 5 (lower is better)
Translates to: RFRHSTGRRSGTRKG*RTESTYQINGWRCQ
Trigger: TTGGCACCTCCAGCCATTTATCTGATAAGTGCTCTCAGTTCGCCATCCCTTCCTTGTGCCACTACGCCTTCCCGTACTGTGACGAAACCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CCA 90 bp GGAATGCCAATCCGTATGCAGTTTGCAGCTTCCGGGCTCTCTGGCTaGGGGAGATCCTCACAGTTTGGTAACTTCAGCCTCATCAAAATC +
Preference number: 5 (lower is better)
Translates to: GMPIRMQFAASGLSG*GRSSQFGNFSLIKI
Trigger: GATTTTGATGAGGCTGAAGTTACCAAACTGTGAGGATCTCCCCCAGCCAGAGAGCCCGGAAGCTGCAAACTGCATACGGATTGGCATTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CCA 90 bp CTACAGCCGACATCGGAATGCGGGGATCGCATGATGAGGAACTCGTaGAGGTCTCCCTGGTTCATATACTCAAAGAGCATACACACAGGT +
Preference number: 5 (lower is better)
Translates to: LQPTSECGDRMMRNS*RSPWFIYSKSIHTG
Trigger: ACCTGTGTGTATGCTCTTTGAGTATATGAACCAGGGAGACCTCCACGAGTTCCTCATCATGCGATCCCCGCATTCCGATGTCGGCTGTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CAA 90 bp AACGCATGCAGTGAGGCTAAAGGAGGATATGGTAATGGGAACTACCTGAACACTCACTGGCGTCCAGACTaGGTCACACTGACGGTTCCC +
Preference number: 5 (lower is better)
Translates to: NACSEAKGGYGNGNYLNTHWRPD*VTLTVP
Trigger: GGGAACCGTCAGTGTGACCAAGTCTGGACGCCAGTG...AGTGTTCAGGTAGTTCCCATTACCATATCCTCCTTTAGCCTCACTGCATGCGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS TCA 90 bp AATGCCTCGGTACGGCTGACAGAATCCATCTTCTTCATACTCATCTaGGGATCCTGGGCTTGCGGTCGGAGGAGGCCCAAATTTGACAAA +
Preference number: 5 (lower is better)
Translates to: NASVRLTESIFFILI*GSWACGRRRPKFDK
Trigger: TTTGTCAAATTTGGGCCTCCTCCGACCGCAAGCCCAGGATCCTCAGATGAGTATGAAGAAGATGGATTCTGTCAGCCGTACCGAGGCATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS GCA 90 bp CACAGCGGAAAGAGGCAGCTCTTTAGCCTTGCTCTTGGGCTTGTATaGATTGAGCATGGACATCTCCACATTCTGTCCTCTGACGGGTTT +
Preference number: 5 (lower is better)
Translates to: HSGKRQLFSLALGLV*IEHGHLHILSSDGF
Trigger: AAACCCGTCAGAGGACAGAATGTGGAGATGTCCATGCTCAATGCATACAAGCCCAAGAGCAAGGCTAAAGAGCTGCCTCTTTCCGCTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CCA 90 bp CTGACGGGTTTTGGCTGCCTCTGGACTGGTGGTGATGAAGACTTCTaGTTATTGCGGCACACACAGATGAAGAAGAAGAGGAAGGCGATA +
Preference number: 5 (lower is better)
Translates to: LTGFGCLWTGGDEDF*LLRHTQMKKKRKAI
Trigger: TATCGCCTTCCTCTTCTTCTTCATCTGTGTGTGCCGCAATAACCAGAAGTCTTCATCACCACCAGTCCAGAGGCAGCCAAAACCCGTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS TCA 90 bp CCTGGTTCATATACTCAAAGAGCATACACACAGGTTGTTCCTGGGTaGCGGCTCCGAGGAGGCATACAATATTGGGGTGGTGTAGTTCAG +
Preference number: 5 (lower is better)
Translates to: PGSYTQRAYTQVVPG*RLRGGIQYWGGVVQ
Trigger: CTGAACTACACCACCCCAATATTGTATGCCTCCTCGGAGCCGTCACCCAGGAACAACCTGTGTGTATGCTCTTTGAGTATATGAACCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CCA 90 bp TCTCCCTGGTTCATATACTCAAAGAGCATACACACAGGTTGTTCCTaGGTGACGGCTCCGAGGAGGCATACAATATTGGGGTGGTGTAGT +
Preference number: 5 (lower is better)
Translates to: SPWFIYSKSIHTGCS*VTAPRRHTILGWCS
Trigger: ACTACACCACCCCAATATTGTATGCCTCCTCGGAGCCGTCACCCAGGAACAACCTGTGTGTATGCTCTTTGAGTATATGAACCAGGGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CAA 90 bp ATAGTGACTTTCCAGAGAAGGTATCGTACTGGCTCATGGAGTGCTAGTCCCCCTACAGGTGCATCATTCTaGAACCAGCGGATACTGGGA +
Preference number: 5 (lower is better)
Translates to: IVTFQRRYRTGSWSASPPTGASF*NQRILG
Trigger: TCCCAGTATCCGCTGGTTCAAGAATGATGCACCTGT...AGGGGGACTAGCACTCCATGAGCCAGTACGATACCTTCTCTGGAAAGTCACTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CAA 90 bp TTGAATTTACTAACCTCTGGTAGCATCACAGGGCTTCCTCCTGCTCATTGCCTGTGGTCCAGGCTGGATTaGACCGTCCCATCTTCATCA +
Preference number: 5 (lower is better)
Translates to: LNLLTSGSITGLPPAHCLWSRLD*TVPSSS
Trigger: TGATGAAGATGGGACGGTCAAATCCAGCCTGGACCA...CAGGCAATGAGCAGGAGGAAGCCCTGTGATGCTACCAGAGGTTAGTAAATTCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CAA 90 bp GGAATGCCCACAAAGACAAATCAAACATTAAGCGATACAGTGATTAAACGCATGATCCGCTGGCGCTGCTaGGGGACCGACTCTTCGGAG +
Preference number: 5 (lower is better)
Translates to: GMPTKTNQTLSDTVIKRMIRWRC*GTDSSE
Trigger: CTCCGAAGAGTCGGTCCCCAAGCAGCGCCAGCGGAT...CATGCGTTTAATCACTGTATCGCTTAATGTTTGATTTGTCTTTGTGGGCATTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS TCA 90 bp TCTGAATTGCTATGTGTAAGAAATCACCATGGTCCAGGCTGGATTTaGCCGTCCCATCTTCATCACTGCTACAGCCGACATCGGAATGCG +
Preference number: 5 (lower is better)
Translates to: SELLCVRNHHGPGWI*PSHLHHCYSRHRNA
Trigger: CGCATTCCGATGTCGGCTGTAGCAGTGATGAAGATGGGACGGTCAAATCCAGCCTGGACCATGGTGATTTCTTACACATAGCAATTCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CAA 90 bp AACGCATGCAGTGAGGCTAAAGGAGGATATGGTAATGGGAACTACCTGAACACTGGATTCCCAGACACTTaGCAGTGCAGTTCTGCAGTC +
Preference number: 5 (lower is better)
Translates to: NACSEAKGGYGNGNYLNTGFPDT*QCSSAV
Trigger: GACTGCAGAACTGCACTGCAAAGTGTCTGGGAATCC...AGTGTTCAGGTAGTTCCCATTACCATATCCTCCTTTAGCCTCACTGCATGCGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CAA 90 bp ACATATCATACACCCAGATGGAGTGTAAATCCCACAATGCGTCCTATTTCCTGGGAGAGCCATAGTTGGTaGCCCGGAAGGAGATTCTCC +
Preference number: 5 (lower is better)
Translates to: TYHTPRWSVNPTMRPISWESHSW*PGRRFS
Trigger: GGAGAATCTCCTTCCGGGCAACCAACTATGGCTCTC...CCAGGAAATAGGACGCATTGTGGGATTTACACTCCATCTGGGTGTATGATATGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CAA 90 bp AACGCATGCAGTGAGGCTAAAGGAGGATATGGTAATGGGAACTACCTGAACACTACAAGTCACGGGGCTTaGGGACAGATGAGGTTTCGT +
Preference number: 5 (lower is better)
Translates to: NACSEAKGGYGNGNYLNTTSHGA*GQMRFR
Trigger: ACGAAACCTCATCTGTCCCAAAGCCCCGTGACTTGT...AGTGTTCAGGTAGTTCCCATTACCATATCCTCCTTTAGCCTCACTGCATGCGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS TCA 90 bp CAGACACTTTGCAGTGCAGTTCTGCAGTCTGCCCCAGGGACGTTGTaGTGTTATTCATCGGCTCATCAAGGGTTAAGTAAGAACCTTTGT +
Preference number: 5 (lower is better)
Translates to: QTLCSAVLQSAPGTL*CYSSAHQGLSKNLC
Trigger: ACAAAGGTTCTTACTTAACCCTTGATGAGCCGATGAATAACATCACAACGTCCCTGGGGCAGACTGCAGAACTGCACTGCAAAGTGTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CAA 90 bp ACATATCATACACCCAGATGGAGTGTAAATCCCACAATGCGTCCTATTTCCTGGGGTATTGGGTATCCATaGATGGGGATGAAGCGCTGG +
Preference number: 5 (lower is better)
Translates to: TYHTPRWSVNPTMRPISWGIGYP*MGMKRW
Trigger: CCAGCGCTTCATCCCCATCAATGGATACCCAATACC...CCAGGAAATAGGACGCATTGTGGGATTTACACTCCATCTGGGTGTATGATATGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CAA 90 bp ACATATCATACACCCAGATGGAGTGTAAATCCCACAATGCGTCCTATTTCCTGGGATTCTCCGAGGTTCTaGGACCACAGGTGCATCATT +
Preference number: 5 (lower is better)
Translates to: TYHTPRWSVNPTMRPISWDSPRF*DHRCII
Trigger: AATGATGCACCTGTGGTCCAAGAACCTCGGAGAATC...CCAGGAAATAGGACGCATTGTGGGATTTACACTCCATCTGGGTGTATGATATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CAA 90 bp AACGCATGCAGTGAGGCTAAAGGAGGATATGGTAATGGGAACTACCTGAACACTCCACTTTCTTGCCATTaGTTGCCACACACTGGAAGT +
Preference number: 5 (lower is better)
Translates to: NACSEAKGGYGNGNYLNTPLSCH*LPHTGS
Trigger: ACTTCCAGTGTGTGGCAACAAATGGCAAGAAAGTGG...AGTGTTCAGGTAGTTCCCATTACCATATCCTCCTTTAGCCTCACTGCATGCGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CAA 90 bp CCTGAATCTCCCAAAGATTCTGAACATGGTAAAAGGTGGTTGGCAAGTAAATACGGAGGAGGCCCAAATTaGACAAACAGGACACCAGTG +
Preference number: 5 (lower is better)
Translates to: PESPKDSEHGKRWLASKYGGGPN*TNRTPV
Trigger: CACTGGTGTCCTGTTTGTCAAATTTGGGCCTCCTCC...GTATTTACTTGCCAACCACCTTTTACCATGTTCAGAATCTTTGGGAGATTCAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CAA 90 bp ACATATCATACACCCAGATGGAGTGTAAATCCCACAATGCGTCCTATTTCCTGGTCTTTAGCCTTGCTCTaGGGCTTGTATGCATTGAGC +
Preference number: 5 (lower is better)
Translates to: TYHTPRWSVNPTMRPISWSLALL*GLYALS
Trigger: GCTCAATGCATACAAGCCCAAGAGCAAGGCTAAAGA...CCAGGAAATAGGACGCATTGTGGGATTTACACTCCATCTGGGTGTATGATATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CAA 90 bp CTTTGCGAAATAGGGTATTTTGTCTTTGGGTTTCAGCTAGCTCCACGAATAACGCTTTGTCGATTTCACTaGAAGTGTTCCAGGACGAGG +
Preference number: 5 (lower is better)
Translates to: LCEIGYFVFGFQLAPRITLCRFH*KCSRTR
Trigger: CCTCGTCCTGGAACACTTCAAGTGAAATCGACAAAG...CGTTATTCGTGGAGCTAGCTGAAACCCAAAGACAAAATACCCTATTTCGCAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CAA 90 bp CTTTGCGAAATAGGGTATTTTGTCTTTGGGTTTCAGCTAGCTCCACGAATAACGGTAGACACCACTTTCTaGCCATTTGTTGCCACACAC +
Preference number: 5 (lower is better)
Translates to: LCEIGYFVFGFQLAPRITVDTTF*PFVATH
Trigger: GTGTGTGGCAACAAATGGCAAGAAAGTGGTGTCTAC...CGTTATTCGTGGAGCTAGCTGAAACCCAAAGACAAAATACCCTATTTCGCAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CAA 90 bp GGAATGCCCACAAAGACAAATCAAACATTAAGCGATACAGTGATTAAACGCATGCTGGGGTGTAATCCCTaGGCTCGGGAACATGTAATT +
Preference number: 5 (lower is better)
Translates to: GMPTKTNQTLSDTVIKRMLGCNP*AREHVI
Trigger: AATTACATGTTCCCGAGCCAAGGGATTACACCCCAG...CATGCGTTTAATCACTGTATCGCTTAATGTTTGATTTGTCTTTGTGGGCATTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CAA 90 bp CCTGAATCTCCCAAAGATTCTGAACATGGTAAAAGGTGGTTGGCAAGTAAATACGTAGCAAAGGAACGTTaGCTTCCTGATTGGATCCTG +
Preference number: 5 (lower is better)
Translates to: PESPKDSEHGKRWLASKYVAKER*LPDWIL
Trigger: CAGGATCCAATCAGGAAGCAAACGTTCCTTTGCTAC...GTATTTACTTGCCAACCACCTTTTACCATGTTCAGAATCTTTGGGAGATTCAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CAA 90 bp TGGTCATTACAAGTCCATGCTTGTAGTTGGAATGCCCACAAAGACAAATCAAACCAGGGTGATTTGGAATaGACATGTGGGGTAGCAAAG +
Preference number: 5 (lower is better)
Translates to: WSLQVHACSWNAHKDKSNQGDLE*TCGVAK
Trigger: CTTTGCTACCCCACATGTCAATTCCAAATCACCCTG...GTTTGATTTGTCTTTGTGGGCATTCCAACTACAAGCATGGACTTGTAATGACCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CAA 90 bp TGGTCATTACAAGTCCATGCTTGTAGTTGGAATGCCCACAAAGACAAATCAAACTTCCACCAGGGTGATTaGGAATTGACATGTGGGGTA +
Preference number: 5 (lower is better)
Translates to: WSLQVHACSWNAHKDKSNFHQGD*ELTCGV
Trigger: TACCCCACATGTCAATTCCAAATCACCCTGGTGGAA...GTTTGATTTGTCTTTGTGGGCATTCCAACTACAAGCATGGACTTGTAATGACCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CAA 90 bp TTGAATTTACTAACCTCTGGTAGCATCACAGGGCTTCCTCCTGCTCATTGCCTGGCAAAGACGATTGTTTaGAGTCTATTTTGTACGGTT +
Preference number: 5 (lower is better)
Translates to: LNLLTSGSITGLPPAHCLAKTIV*SLFCTV
Trigger: AACCGTACAAAATAGACTCAAAACAATCGTCTTTGC...CAGGCAATGAGCAGGAGGAAGCCCTGTGATGCTACCAGAGGTTAGTAAATTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CCA 90 bp CACAGTTTGGTAACTTCAGCCTCATCAAAATCATGGGATTTGATCTaGCAAAAATGTACTCTGTCTGACACAGGACATTCTCCAGCACTT +
Preference number: 5 (lower is better)
Translates to: HSLVTSASSKSWDLI*QKCTLSDTGHSPAL
Trigger: AAGTGCTGGAGAATGTCCTGTGTCAGACAGAGTACATTTTTGCCAGATCAAATCCCATGATTTTGATGAGGCTGAAGTTACCAAACTGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CAA 90 bp CCTGAATCTCCCAAAGATTCTGAACATGGTAAAAGGTGGTTGGCAAGTAAATACATATACACAGTGCGGTaGCCAATAAATCGTGCACAT +
Preference number: 5 (lower is better)
Translates to: PESPKDSEHGKRWLASKYIYTVR*PINRAH
Trigger: ATGTGCACGATTTATTGGCAACCGCACTGTGTATAT...GTATTTACTTGCCAACCACCTTTTACCATGTTCAGAATCTTTGGGAGATTCAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CAA 90 bp TTGCATAGCAACAAAAGGATACAAATCTTCTCCTCTACTCCACTTCAAGAAATGGGAGATCCTCACAGTTaGGTAACTTCAGCCTCATCA +
Preference number: 5 (lower is better)
Translates to: LHSNKRIQIFSSTPLQEMGDPHS*VTSASS
Trigger: TGATGAGGCTGAAGTTACCAAACTGTGAGGATCTCC...CATTTCTTGAAGTGGAGTAGAGGAGAAGATTTGTATCCTTTTGTTGCTATGCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS-3UTR CAA 90 bp GGAATGCCCACAAAGACAAATCAAACATTAAGCGATACAGTGATTAAACGCATGTTCTCTTTGGAATCTTaGGAATCACATGCTGGGATG +
Preference number: 5 (lower is better)
Translates to: GMPTKTNQTLSDTVIKRMFSLES*ESHAGM
Trigger: CATCCCAGCATGTGATTCCAAAGATTCCAAAGAGAA...CATGCGTTTAATCACTGTATCGCTTAATGTTTGATTTGTCTTTGTGGGCATTCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CCA 72 bp GCAAGCTGGCCACATGGCCAGTGCTGGTCGATCCGCTaGCGCTGCTTGGGGACCGACTCTTCGGAGGTGGGC +
Preference number: 6 (lower is better)
Translates to: ASWPHGQCWSIR*RCLGTDSSEVG
Trigger: GCCCACCTCCGAAGAGTCGGTCCCCAAGCAGCGCCAGCGGATCGACCAGCACTGGCCATGTGGCCAGCTTGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CAA 90 bp GCAAGCTGGCCACATGGCCAGTGCTGGTCGATCCGCTGGCGCTGCTaGGGGACCGACTCTTCGGAGGTGGGCAGTGCTGAATCACCCTGG +
Preference number: 6 (lower is better)
Translates to: ASWPHGQCWSIRWRC*GTDSSEVGSAESPW
Trigger: CCAGGGTGATTCAGCACTGCCCACCTCCGAAGAGTCGGTCCCCAAGCAGCGCCAGCGGATCGACCAGCACTGGCCATGTGGCCAGCTTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS GCA 72 bp TGGATCCTGATGAGGGCAAGCTGGCCACATGGCCAGTaGTGGTCGATCCGCTGGCGCTGCTTGGGGACCGAC +
Preference number: 6 (lower is better)
Translates to: WILMRASWPHGQ*WSIRWRCLGTD
Trigger: GTCGGTCCCCAAGCAGCGCCAGCGGATCGACCAGCACTGGCCATGTGGCCAGCTTGCCCTCATCAGGATCCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CAA 72 bp CCACATGGCCAGTGCTGGTCGATCCGCTGGCGCTGCTaGGGGACCGACTCTTCGGAGGTGGGCAGTGCTGAA +
Preference number: 6 (lower is better)
Translates to: PHGQCWSIRWRC*GTDSSEVGSAE
Trigger: TTCAGCACTGCCCACCTCCGAAGAGTCGGTCCCCAAGCAGCGCCAGCGGATCGACCAGCACTGGCCATGTGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS TCA 72 bp GTGGCATTTCCACCCGAGGGGGTGGTAGAGCTGGTGTaGCTTGAGAGGCCCTCCCAGGATCGAAGCCGGACG +
Preference number: 6 (lower is better)
Translates to: VAFPPEGVVELV*LERPSQDRSRT
Trigger: CGTCCGGCTTCGATCCTGGGAGGGCCTCTCAAGTCACACCAGCTCTACCACCCCCTCGGGTGGAAATGCCAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS GCA 72 bp CGGAGGTGGGCAGTGCTGAATCACCCTGGGAGGCCCTaGAGGCTGGTAGTGGGCAGCTGGAAAGGCTGCATA +
Preference number: 6 (lower is better)
Translates to: RRWAVLNHPGRP*RLVVGSWKGCI
Trigger: TATGCAGCCTTTCCAGCTGCCCACTACCAGCCTGCAGGGCCTCCCAGGGTGATTCAGCACTGCCCACCTCCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CCA 72 bp CACATGGCCAGTGCTGGTCGATCCGCTGGCGCTGCTTaGGGACCGACTCTTCGGAGGTGGGCAGTGCTGAAT +
Preference number: 6 (lower is better)
Translates to: HMASAGRSAGAA*GPTLRRWAVLN
Trigger: ATTCAGCACTGCCCACCTCCGAAGAGTCGGTCCCCAAGCAGCGCCAGCGGATCGACCAGCACTGGCCATGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CCA 72 bp ATCCTGATGAGGGCAAGCTGGCCACATGGCCAGTGCTaGTCGATCCGCTGGCGCTGCTTGGGGACCGACTCT +
Preference number: 6 (lower is better)
Translates to: ILMRASWPHGQC*SIRWRCLGTDS
Trigger: AGAGTCGGTCCCCAAGCAGCGCCAGCGGATCGACCAGCACTGGCCATGTGGCCAGCTTGCCCTCATCAGGAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS TCA 72 bp ATTTCCACCCGAGGGGGTGGTAGAGCTGGTGTGACTTaGGAGGCCCTCCCAGGATCGAAGCCGGACGTGGAT +
Preference number: 6 (lower is better)
Translates to: ISTRGGGRAGVT*EALPGSKPDVD
Trigger: ATCCACGTCCGGCTTCGATCCTGGGAGGGCCTCTCAAGTCACACCAGCTCTACCACCCCCTCGGGTGGAAAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS GCA 72 bp AGGTTACTCACAGGGCTGGCACTGAGGGAAGTGGTCTaGGTGGTGGCATTTCCACCCGAGGGGGTGGTAGAG +
Preference number: 6 (lower is better)
Translates to: RLLTGLALREVV*VVAFPPEGVVE
Trigger: CTCTACCACCCCCTCGGGTGGAAATGCCACCACGCAGACCACTTCCCTCAGTGCCAGCCCTGTGAGTAACCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CCA 72 bp CGTTTGCTTCCTGATTGGATCCTGATGAGGGCAAGCTaGCCACATGGCCAGTGCTGGTCGATCCGCTGGCGC +
Preference number: 6 (lower is better)
Translates to: RLLPDWILMRAS*PHGQCWSIRWR
Trigger: GCGCCAGCGGATCGACCAGCACTGGCCATGTGGCCAGCTTGCCCTCATCAGGATCCAATCAGGAAGCAAACG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS TCA 72 bp GTTCCAGGACGAGGTAGGCACCAGCTCAGCACTGACTaGCAACTCTGTTTCTTGGGCATCAGCCCCGCGTGC +
Preference number: 6 (lower is better)
Translates to: VPGRGRHQLSTD*QLCFLGISPAC
Trigger: GCACGCGGGGCTGATGCCCAAGAAACAGAGTTGTCAGTCAGTGCTGAGCTGGTGCCTACCTCGTCCTGGAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS GCA 72 bp AGGATCCGCCATGGGAATGCCAATCCGTATGCAGTTTaGAGCTTCCGGGCTCTCTGGCTGGGGGAGATCCTC +
Preference number: 6 (lower is better)
Translates to: RIRHGNANPYAV*SFRALWLGEIL
Trigger: GAGGATCTCCCCCAGCCAGAGAGCCCGGAAGCTGCAAACTGCATACGGATTGGCATTCCCATGGCGGATCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS GCA 72 bp ACCAGCGGATACTGGGAGGTGGATTCCCAGACACTTTaGAGTGCAGTTCTGCAGTCTGCCCCAGGGACGTTG +
Preference number: 6 (lower is better)
Translates to: TSGYWEVDSQTL*SAVLQSAPGTL
Trigger: CAACGTCCCTGGGGCAGACTGCAGAACTGCACTGCAAAGTGTCTGGGAATCCACCTCCCAGTATCCGCTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CCA 72 bp CTCCGGAAAGCGCAGAGCAGTGAAGCTGTGTGTGTGTaGGTACTGAGAATTCCATGGCTGGCACTGGCGTCC +
Preference number: 6 (lower is better)
Translates to: LRKAQSSEAVCV*VLRIPWLALAS
Trigger: GGACGCCAGTGCCAGCCATGGAATTCTCAGTACCCACACACACACAGCTTCACTGCTCTGCGCTTTCCGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS TCA 72 bp GTCTCCTGGAAGGTATCTCATTCCAGCACTCGGTCATaGGGCTGTACATGCGCGGCGGGCAGTCTTCAGAAC +
Preference number: 6 (lower is better)
Translates to: VSWKVSHSSTRS*GCTCAAGSLQN
Trigger: GTTCTGAAGACTGCCCGCCGCGCATGTACAGCCTCATGACCGAGTGCTGGAATGAGATACCTTCCAGGAGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS GCA 72 bp CGGATACTGGGAGGTGGATTCCCAGACACTTTGCAGTaGAGTTCTGCAGTCTGCCCCAGGGACGTTGTGATG +
Preference number: 6 (lower is better)
Translates to: RILGGGFPDTLQ*SSAVCPRDVVM
Trigger: CATCACAACGTCCCTGGGGCAGACTGCAGAACTGCACTGCAAAGTGTCTGGGAATCCACCTCCCAGTATCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CAA 90 bp CCGAGAGCCATAGTTGGTTGCCCGGAAGGAGATTCTCCGAGGTTCTaGGACCACAGGTGCATCATTCTTGAACCAGCGGATACTGGGAGG +
Preference number: 6 (lower is better)
Translates to: PRAIVGCPEGDSPRF*DHRCIILEPADTGR
Trigger: CCTCCCAGTATCCGCTGGTTCAAGAATGATGCACCTGTGGTCCAAGAACCTCGGAGAATCTCCTTCCGGGCAACCAACTATGGCTCTCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CAA 90 bp CGCTGGGCCAATGAAACCAGCGATCTGACCCTGGGGTGTAATCCCTaGGCTCGGGAACATGTAATTGGGAAATCGGGGGTTGCTGAGGTT +
Preference number: 6 (lower is better)
Translates to: RWANETSDLTLGCNP*AREHVIGKSGVAEV
Trigger: AACCTCAGCAACCCCCGATTTCCCAATTACATGTTCCCGAGCCAAGGGATTACACCCCAGGGTCAGATCGCTGGTTTCATTGGCCCAGCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS GCA 72 bp CCGGAAGGAGATTCTCCGAGGTTCTTGGACCACAGGTaGATCATTCTTGAACCAGCGGATACTGGGAGGTGG +
Preference number: 6 (lower is better)
Translates to: PEGDSPRFLDHR*IILEPADTGRW
Trigger: CCACCTCCCAGTATCCGCTGGTTCAAGAATGATGCACCTGTGGTCCAAGAACCTCGGAGAATCTCCTTCCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CCA 72 bp ATTGATGGGGATGAAGCGCTGGTTCTGAGGTATCGCTaGGCCAATGAAACCAGCGATCTGACCCTGGGGTGT +
Preference number: 6 (lower is better)
Translates to: IDGDEALVLRYR*ANETSDLTLGC
Trigger: ACACCCCAGGGTCAGATCGCTGGTTTCATTGGCCCAGCGATACCTCAGAACCAGCGCTTCATCCCCATCAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CCA 72 bp GTGGGCAGCTGGAAAGGCTGCATAGCCAGGAGGTATTaGGTATCCATTGATGGGGATGAAGCGCTGGTTCTG +
Preference number: 6 (lower is better)
Translates to: VGSWKGCIARRY*VSIDGDEALVL
Trigger: CAGAACCAGCGCTTCATCCCCATCAATGGATACCCAATACCTCCTGGCTATGCAGCCTTTCCAGCTGCCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS TCA 72 bp TTCATCACGACACAAGTCACGGGGCTTTGGGACAGATaGGGTTTCGTCACAGTACGGGAAGGCGTAGTGGCA +
Preference number: 6 (lower is better)
Translates to: FITTQVTGLWDR*GFVTVREGVVA
Trigger: TGCCACTACGCCTTCCCGTACTGTGACGAAACCTCATCTGTCCCAAAGCCCCGTGACTTGTGTCGTGATGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS GCA 72 bp AAGGTTTCTAATCCGCAGCCGAGAGCCATAGTTGGTTaGCCGGAAGGAGATTCTCCGAGGTTCTTGGACCAC +
Preference number: 6 (lower is better)
Translates to: KVSNPQPRAIVG*PEGDSPRFLDH
Trigger: GTGGTCCAAGAACCTCGGAGAATCTCCTTCCGGGCAACCAACTATGGCTCTCGGCTGCGGATTAGAAACCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CCA 72 bp AGTGAAGCTGTGTGTGTGTGGGTACTGAGAATTCCATaGCTGGCACTGGCGTCCAGACTTGGTCACACTGAC +
Preference number: 6 (lower is better)
Translates to: SEAVCVWVLRIP*LALASRLGHTD
Trigger: GTCAGTGTGACCAAGTCTGGACGCCAGTGCCAGCCATGGAATTCTCAGTACCCACACACACACAGCTTCACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CCA 72 bp ACATGTGGGGTAGCAAAGGAACGTTTGCTTCCTGATTaGATCCTGATGAGGGCAAGCTGGCCACATGGCCAG +
Preference number: 6 (lower is better)
Translates to: TCGVAKERLLPD*ILMRASWPHGQ
Trigger: CTGGCCATGTGGCCAGCTTGCCCTCATCAGGATCCAATCAGGAAGCAAACGTTCCTTTGCTACCCCACATGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CAA 90 bp CGGAAGGAGATTCTCCGAGGTTCTTGGACCACAGGTGCATCATTCTaGAACCAGCGGATACTGGGAGGTGGATTCCCAGACACTTTGCAG +
Preference number: 6 (lower is better)
Translates to: RKEILRGSWTTGASF*NQRILGGGFPDTLQ
Trigger: CTGCAAAGTGTCTGGGAATCCACCTCCCAGTATCCGCTGGTTCAAGAATGATGCACCTGTGGTCCAAGAACCTCGGAGAATCTCCTTCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CAA 90 bp CATTCTCCAGCACTTCACATTCATCACGACACAAGTCACGGGGCTTaGGGACAGATGAGGTTTCGTCACAGTACGGGAAGGCGTAGTGGC +
Preference number: 6 (lower is better)
Translates to: HSPALHIHHDTSHGA*GQMRFRHSTGRRSG
Trigger: GCCACTACGCCTTCCCGTACTGTGACGAAACCTCATCTGTCCCAAAGCCCCGTGACTTGTGTCGTGATGAATGTGAAGTGCTGGAGAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS TCA 72 bp TTCTCCGAGGTTCTTGGACCACAGGTGCATCATTCTTaGACCAGCGGATACTGGGAGGTGGATTCCCAGACA +
Preference number: 6 (lower is better)
Translates to: FSEVLGPQVHHS*TSGYWEVDSQT
Trigger: TGTCTGGGAATCCACCTCCCAGTATCCGCTGGTTCAAGAATGATGCACCTGTGGTCCAAGAACCTCGGAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CCA 72 bp CACAGTACGGGAAGGCGTAGTGGCACAAGGAAGGGATaGCGAACTGAGAGCACTTATCAGATAAATGGCTGG +
Preference number: 6 (lower is better)
Translates to: HSTGRRSGTRKG*RTESTYQINGW
Trigger: CCAGCCATTTATCTGATAAGTGCTCTCAGTTCGCCATCCCTTCCTTGTGCCACTACGCCTTCCCGTACTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CAA 72 bp ATTCTCCGAGGTTCTTGGACCACAGGTGCATCATTCTaGAACCAGCGGATACTGGGAGGTGGATTCCCAGAC +
Preference number: 6 (lower is better)
Translates to: ILRGSWTTGASF*NQRILGGGFPD
Trigger: GTCTGGGAATCCACCTCCCAGTATCCGCTGGTTCAAGAATGATGCACCTGTGGTCCAAGAACCTCGGAGAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CAA 72 bp CGCACAGCGGAAAGAGGCAGCTCTTTAGCCTTGCTCTaGGGCTTGTATGCATTGAGCATGGACATCTCCACA +
Preference number: 6 (lower is better)
Translates to: RTAERGSSLALL*GLYALSMDIST
Trigger: TGTGGAGATGTCCATGCTCAATGCATACAAGCCCAAGAGCAAGGCTAAAGAGCTGCCTCTTTCCGCTGTGCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CAA 90 bp GGTTTTGGCTGCCTCTGGACTGGTGGTGATGAAGACTTCTGGTTATaGCGGCACACACAGATGAAGAAGAAGAGGAAGGCGATAGCCAGG +
Preference number: 6 (lower is better)
Translates to: GFGCLWTGGDEDFWL*RHTQMKKKRKAIAR
Trigger: CCTGGCTATCGCCTTCCTCTTCTTCTTCATCTGTGTGTGCCGCAATAACCAGAAGTCTTCATCACCACCAGTCCAGAGGCAGCCAAAACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CAA 90 bp GCGGAAAGAGGCAGCTCTTTAGCCTTGCTCTTGGGCTTGTATGCATaGAGCATGGACATCTCCACATTCTGTCCTCTGACGGGTTTTGGC +
Preference number: 6 (lower is better)
Translates to: AERGSSLALLLGLYA*SMDISTFCPLTGFG
Trigger: GCCAAAACCCGTCAGAGGACAGAATGTGGAGATGTCCATGCTCAATGCATACAAGCCCAAGAGCAAGGCTAAAGAGCTGCCTCTTTCCGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CAA 90 bp GTGGAGGTCTCCCTGGTTCATATACTCAAAGAGCATACACACAGGTaGTTCCTGGGTGACGGCTCCGAGGAGGCATACAATATTGGGGTG +
Preference number: 6 (lower is better)
Translates to: VEVSLVHILKEHTHR*FLGDGSEEAYNIGV
Trigger: CACCCCAATATTGTATGCCTCCTCGGAGCCGTCACCCAGGAACAACCTGTGTGTATGCTCTTTGAGTATATGAACCAGGGAGACCTCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CAA 90 bp CACCAGGGTGATTTGGAATTGACATGTGGGGTAGCAAAGGAACGTTaGCTTCCTGATTGGATCCTGATGAGGGCAAGCTGGCCACATGGC +
Preference number: 6 (lower is better)
Translates to: HQGDLELTCGVAKER*LPDWILMRASWPHG
Trigger: GCCATGTGGCCAGCTTGCCCTCATCAGGATCCAATCAGGAAGCAAACGTTCCTTTGCTACCCCACATGTCAATTCCAAATCACCCTGGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CAA 90 bp AAACGCACAGCGGAAAGAGGCAGCTCTTTAGCCTTGCTCTTGGGCTaGTATGCATTGAGCATGGACATCTCCACATTCTGTCCTCTGACG +
Preference number: 6 (lower is better)
Translates to: KRTAERGSSLALLLG*YALSMDISTFCPLT
Trigger: CGTCAGAGGACAGAATGTGGAGATGTCCATGCTCAATGCATACAAGCCCAAGAGCAAGGCTAAAGAGCTGCCTCTTTCCGCTGTGCGTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS TCA 72 bp ATTGACATGTGGGGTAGCAAAGGAACGTTTGCTTCCTaGTTGGATCCTGATGAGGGCAAGCTGGCCACATGG +
Preference number: 6 (lower is better)
Translates to: IDMWGSKGTFAS*LDPDEGKLATW
Trigger: CCATGTGGCCAGCTTGCCCTCATCAGGATCCAATCAGGAAGCAAACGTTCCTTTGCTACCCCACATGTCAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS GCA 72 bp GACATCTCCACATTCTGTCCTCTGACGGGTTTTGGCTaGCTCTGGACTGGTGGTGATGAAGACTTCTGGTTA +
Preference number: 6 (lower is better)
Translates to: DISTFCPLTGFG*LWTGGDEDFWL
Trigger: TAACCAGAAGTCTTCATCACCACCAGTCCAGAGGCAGCCAAAACCCGTCAGAGGACAGAATGTGGAGATGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CAA 72 bp ATAGTTGGTTGCCCGGAAGGAGATTCTCCGAGGTTCTaGGACCACAGGTGCATCATTCTTGAACCAGCGGAT +
Preference number: 6 (lower is better)
Translates to: IVGCPEGDSPRF*DHRCIILEPAD
Trigger: ATCCGCTGGTTCAAGAATGATGCACCTGTGGTCCAAGAACCTCGGAGAATCTCCTTCCGGGCAACCAACTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CAA 72 bp CTTCCGGGCTCTCTGGCTGGGGGAGATCCTCACAGTTaGGTAACTTCAGCCTCATCAAAATCATGGGATTTG +
Preference number: 6 (lower is better)
Translates to: LPGSLAGGDPHS*VTSASSKSWDL
Trigger: CAAATCCCATGATTTTGATGAGGCTGAAGTTACCAAACTGTGAGGATCTCCCCCAGCCAGAGAGCCCGGAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CAA 72 bp TGCCTCTGGACTGGTGGTGATGAAGACTTCTGGTTATaGCGGCACACACAGATGAAGAAGAAGAGGAAGGCG +
Preference number: 6 (lower is better)
Translates to: CLWTGGDEDFWL*RHTQMKKKRKA
Trigger: CGCCTTCCTCTTCTTCTTCATCTGTGTGTGCCGCAATAACCAGAAGTCTTCATCACCACCAGTCCAGAGGCA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CAA 72 bp GGCAGCTCTTTAGCCTTGCTCTTGGGCTTGTATGCATaGAGCATGGACATCTCCACATTCTGTCCTCTGACG +
Preference number: 6 (lower is better)
Translates to: GSSLALLLGLYA*SMDISTFCPLT
Trigger: CGTCAGAGGACAGAATGTGGAGATGTCCATGCTCAATGCATACAAGCCCAAGAGCAAGGCTAAAGAGCTGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CAA 72 bp AATGAAACCAGCGATCTGACCCTGGGGTGTAATCCCTaGGCTCGGGAACATGTAATTGGGAAATCGGGGGTT +
Preference number: 6 (lower is better)
Translates to: NETSDLTLGCNP*AREHVIGKSGV
Trigger: AACCCCCGATTTCCCAATTACATGTTCCCGAGCCAAGGGATTACACCCCAGGGTCAGATCGCTGGTTTCATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CAA 90 bp AGTTTGCAGCTTCCGGGCTCTCTGGCTGGGGGAGATCCTCACAGTTaGGTAACTTCAGCCTCATCAAAATCATGGGATTTGATCTGGCAA +
Preference number: 6 (lower is better)
Translates to: SLQLPGSLAGGDPHS*VTSASSKSWDLIWQ
Trigger: TTGCCAGATCAAATCCCATGATTTTGATGAGGCTGAAGTTACCAAACTGTGAGGATCTCCCCCAGCCAGAGAGCCCGGAAGCTGCAAACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CAA 90 bp TCCATGAAACGCACAGCGGAAAGAGGCAGCTCTTTAGCCTTGCTCTaGGGCTTGTATGCATTGAGCATGGACATCTCCACATTCTGTCCT +
Preference number: 6 (lower is better)
Translates to: SMKRTAERGSSLALL*GLYALSMDISTFCP
Trigger: AGGACAGAATGTGGAGATGTCCATGCTCAATGCATACAAGCCCAAGAGCAAGGCTAAAGAGCTGCCTCTTTCCGCTGTGCGTTTCATGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS TCA 72 bp TATACTCAAAGAGCATACACACAGGTTGTTCCTGGGTaGCGGCTCCGAGGAGGCATACAATATTGGGGTGGT +
Preference number: 6 (lower is better)
Translates to: YTQRAYTQVVPG*RLRGGIQYWGG
Trigger: ACCACCCCAATATTGTATGCCTCCTCGGAGCCGTCACCCAGGAACAACCTGTGTGTATGCTCTTTGAGTATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CCA 72 bp TTTGGCTGCCTCTGGACTGGTGGTGATGAAGACTTCTaGTTATTGCGGCACACACAGATGAAGAAGAAGAGG +
Preference number: 6 (lower is better)
Translates to: FGCLWTGGDEDF*LLRHTQMKKKR
Trigger: CCTCTTCTTCTTCATCTGTGTGTGCCGCAATAACCAGAAGTCTTCATCACCACCAGTCCAGAGGCAGCCAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CAA 72 bp GCGGAAAGAGGCAGCTCTTTAGCCTTGCTCTTGGGCTaGTATGCATTGAGCATGGACATCTCCACATTCTGT +
Preference number: 6 (lower is better)
Translates to: AERGSSLALLLG*YALSMDISTFC
Trigger: ACAGAATGTGGAGATGTCCATGCTCAATGCATACAAGCCCAAGAGCAAGGCTAAAGAGCTGCCTCTTTCCGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CAA 72 bp TCCCTGGTTCATATACTCAAAGAGCATACACACAGGTaGTTCCTGGGTGACGGCTCCGAGGAGGCATACAAT +
Preference number: 6 (lower is better)
Translates to: SLVHILKEHTHR*FLGDGSEEAYN
Trigger: ATTGTATGCCTCCTCGGAGCCGTCACCCAGGAACAACCTGTGTGTATGCTCTTTGAGTATATGAACCAGGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CAA 72 bp GCTATGTGTAAGAAATCACCATGGTCCAGGCTGGATTaGACCGTCCCATCTTCATCACTGCTACAGCCGACA +
Preference number: 6 (lower is better)
Translates to: AMCKKSPWSRLD*TVPSSSLLQPT
Trigger: TGTCGGCTGTAGCAGTGATGAAGATGGGACGGTCAAATCCAGCCTGGACCATGGTGATTTCTTACACATAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS TCA 72 bp GGAGGCATACAATATTGGGGTGGTGTAGTTCAGCCATaGGAGAGGCTTCCTGTTGAAATTCTGTCCACTGCT +
Preference number: 6 (lower is better)
Translates to: GGIQYWGGVVQP*ERLPVEILSTA
Trigger: AGCAGTGGACAGAATTTCAACAGGAAGCCTCTCTCATGGCTGAACTACACCACCCCAATATTGTATGCCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS TCA 72 bp CTATGTGTAAGAAATCACCATGGTCCAGGCTGGATTTaGCCGTCCCATCTTCATCACTGCTACAGCCGACAT +
Preference number: 6 (lower is better)
Translates to: LCVRNHHGPGWI*PSHLHHCYSRH
Trigger: ATGTCGGCTGTAGCAGTGATGAAGATGGGACGGTCAAATCCAGCCTGGACCATGGTGATTTCTTACACATAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CCA 72 bp GGTTTTGATAGCCACCAGCTGAGCATGGTCCATGCCTaGGAGGTAGAGATGGCCCTTATAGATTTTTCCAAA +
Preference number: 6 (lower is better)
Translates to: GFDSHQLSMVHA*EVEMALIDFSK
Trigger: TTTGGAAAAATCTATAAGGGCCATCTCTACCTCCCAGGCATGGACCATGCTCAGCTGGTGGCTATCAAAACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CAA 72 bp CCCTGCATATGCAAAGACTCCATATACACAGTGCGGTaGCCAATAAATCGTGCACATGCAATGCCTCGGTAC +
Preference number: 6 (lower is better)
Translates to: PCICKDSIYTVR*PINRAHAMPRY
Trigger: GTACCGAGGCATTGCATGTGCACGATTTATTGGCAACCGCACTGTGTATATGGAGTCTTTGCATATGCAGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CAA 72 bp GATTTGGAATTGACATGTGGGGTAGCAAAGGAACGTTaGCTTCCTGATTGGATCCTGATGAGGGCAAGCTGG +
Preference number: 6 (lower is better)
Translates to: DLELTCGVAKER*LPDWILMRASW
Trigger: CCAGCTTGCCCTCATCAGGATCCAATCAGGAAGCAAACGTTCCTTTGCTACCCCACATGTCAATTCCAAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CAA 90 bp AATTCTTCCATGAAACGCACAGCGGAAAGAGGCAGCTCTTTAGCCTaGCTCTTGGGCTTGTATGCATTGAGCATGGACATCTCCACATTC +
Preference number: 6 (lower is better)
Translates to: NSSMKRTAERGSSLA*LLGLYALSMDISTF
Trigger: GAATGTGGAGATGTCCATGCTCAATGCATACAAGCCCAAGAGCAAGGCTAAAGAGCTGCCTCTTTCCGCTGTGCGTTTCATGGAAGAATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS TCA 72 bp CCAATAAATCGTGCACATGCAATGCCTCGGTACGGCTaGCAGAATCCATCTTCTTCATACTCATCTGAGGAT +
Preference number: 6 (lower is better)
Translates to: PINRAHAMPRYG*QNPSSSYSSED
Trigger: ATCCTCAGATGAGTATGAAGAAGATGGATTCTGTCAGCCGTACCGAGGCATTGCATGTGCACGATTTATTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS TCA 72 bp TTGTTGCCAAAAACAGTGATACCCATTCCACCAGGGTaGTTTGGAATTGACATGTGGGGTAGCAAAGGAACG +
Preference number: 6 (lower is better)
Translates to: LLPKTVIPIPPG*FGIDMWGSKGT
Trigger: CGTTCCTTTGCTACCCCACATGTCAATTCCAAATCACCCTGGTGGAATGGGTATCACTGTTTTTGGCAACAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS CAA 90 bp GATCCTCACAGTTTGGTAACTTCAGCCTCATCAAAATCATGGGATTaGATCTGGCAAAAATGTACTCTGTCTGACACAGGACATTCTCCA +
Preference number: 6 (lower is better)
Translates to: DPHSLVTSASSKSWD*IWQKCTLSDTGHSP
Trigger: TGGAGAATGTCCTGTGTCAGACAGAGTACATTTTTGCCAGATCAAATCCCATGATTTTGATGAGGCTGAAGTTACCAAACTGTGAGGATC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6
CDS GCA 72 bp AAATTTTTACATGCAGTTGCTCTCCAATTAAAATGTTaGGAGCTGCAAGGTCCTTGTGCACGAAGAAGTGAC +
Preference number: 6 (lower is better)
Translates to: KFLHAVALQLKC*ELQGPCARRSD
Trigger: GTCACTTCTTCGTGCACAAGGACCTTGCAGCTCGCAACATTTTAATTGGAGAGCAACTGCATGTAAAAATTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039630.6