Pregenerated sensors for ROPN1L (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022236Ensembl transcript IDs: ENSMUST00000110408.3
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | ACAGGTAATGACAAGCTGTATTTGGCGCCAAGGTTTCTCCTAAGCATGGCTTCACAAGTATCAATGCTCTaGTTCCAGAGCTTTCTCTTC | + |
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Preference number: 2 (lower is better) Translates to: TGNDKLYLAPRFLLSMASQVSML*FQSFLF Trigger: GAAGAGAAAGCTCTGGAAGCAGAGCATTGATACTTG...TGAAGCCATGCTTAGGAGAAACCTTGGCGCCAAATACAGCTTGTCATTACCTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS-3UTR GCA 90 bp | TCTCCTAAGCATGGCTTCAACATTAAACAAGTATCAATGCTCTGCTTCCAGAGCAGCACGTCCGCCGGCTaGGTACGGATGGCAGCCTTG | + |
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Preference number: 4 (lower is better) Translates to: SPKHGFNIKQVSMLCFQSSTSAG*VRMAAL Trigger: CAAGGCTGCCATCCGTACGCAGCCGGCGGACGTGCT...GCTCTGGAAGCAGAGCATTGATACTTGTTTAATGTTGAAGCCATGCTTAGGAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS-3UTR TCA 90 bp | ACAGGTAATGACAAGCTGTATTTGGCGCCAAGGTTTCTCCTAAGCATGGCTTCACCTCCGGGTCAGAGGTaGGGATCTCACACACGTTCT | + |
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Preference number: 4 (lower is better) Translates to: TGNDKLYLAPRFLLSMASPPGQR*GSHTRS Trigger: AGAACGTGTGTGAGATCCTCACCTCTGACCCGGAGG...TGAAGCCATGCTTAGGAGAAACCTTGGCGCCAAATACAGCTTGTCATTACCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS-3UTR GCA 90 bp | CTAAGCATGGCTTCAACATTAAACAAGTATCAATGCTCTGCTTCCAGAGCTTTCCCGTGTTCAGGGTCCTaGCCAGGGAGCTGCATCCGA | + |
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Preference number: 4 (lower is better) Translates to: LSMASTLNKYQCSASRAFPCSGS*PGSCIR Trigger: TCGGATGCAGCTCCCTGGGCAGGACCCTGAACACGG...GAAAGCTCTGGAAGCAGAGCATTGATACTTGTTTAATGTTGAAGCCATGCTTAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS-3UTR GCA 90 bp | GGCTTCAACATTAAACAAGTATCAATGCTCTGCTTCCAGAGCTTTCTCTTCAAGAGGTTTCAAAGGGGATaGGAGCAGGCCCGCCCTCCG | + |
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Preference number: 4 (lower is better) Translates to: GFNIKQVSMLCFQSFLFKRFQRG*EQARPP Trigger: CGGAGGGCGGGCCTGCTCGCATCCCCTTTGAAACCT...CTTGAAGAGAAAGCTCTGGAAGCAGAGCATTGATACTTGTTTAATGTTGAAGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS-3UTR GCA 90 bp | CTAAGCATGGCTTCAACATTAAACAAGTATCAATGCTCTGCTTCCAGAGCTTTCGGGATGTGGATCTGCTaGGCGCAGAACATGGTGTCG | + |
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Preference number: 4 (lower is better) Translates to: LSMASTLNKYQCSASRAFGMWIC*AQNMVS Trigger: CGACACCATGTTCTGCGCGCAGCAGATCCACATCCC...GAAAGCTCTGGAAGCAGAGCATTGATACTTGTTTAATGTTGAAGCCATGCTTAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS-3UTR GCA 90 bp | CTAAGCATGGCTTCAACATTAAACAAGTATCAATGCTCTGCTTCCAGAGCTTTCGCAGCCTTGGTGAACTaGTTGAGGATGTCCGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: LSMASTLNKYQCSASRAFAALVN*LRMSGS Trigger: GCTGCCGGACATCCTCAAGCAGTTCACCAAGGCTGC...GAAAGCTCTGGAAGCAGAGCATTGATACTTGTTTAATGTTGAAGCCATGCTTAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS-3UTR GCA 90 bp | GGTAATGACAAGCTGTATTTGGCGCCAAGGTTTCTCCTAAGCATGGCTTCAACATGCTTGTGGCTACACTaGTTGTGCAGGACTTTCAGG | + |
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Preference number: 4 (lower is better) Translates to: GNDKLYLAPRFLLSMASTCLWLH*LCRTFR Trigger: CCTGAAAGTCCTGCACAAGCAGTGTAGCCACAAGCA...TGTTGAAGCCATGCTTAGGAGAAACCTTGGCGCCAAATACAGCTTGTCATTACC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS-3UTR CCA 90 bp | AATGACAAGCTGTATTTGGCGCCAAGGTTTCTCCTAAGCATGGCTTCAACATTAACTTTCAGGAGTCCCTaGGTCAGGCCTGTGTCAGTC | + |
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Preference number: 4 (lower is better) Translates to: NDKLYLAPRFLLSMASTLTFRSP*VRPVSV Trigger: GACTGACACAGGCCTGACCCAGGGACTCCTGAAAGT...TAATGTTGAAGCCATGCTTAGGAGAAACCTTGGCGCCAAATACAGCTTGTCATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS-3UTR CCA 90 bp | TCTCCTAAGCATGGCTTCAACATTAAACAAGTATCAATGCTCTGCTTCCAGAGCGAAGTGGGTCTCCTCTaGACAGGGCTGAAAAATACC | + |
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Preference number: 4 (lower is better) Translates to: SPKHGFNIKQVSMLCFQSEVGLL*TGLKNT Trigger: GGTATTTTTCAGCCCTGTCCAGAGGAGACCCACTTC...GCTCTGGAAGCAGAGCATTGATACTTGTTTAATGTTGAAGCCATGCTTAGGAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS-3UTR CCA 90 bp | ATGGCTTCAACATTAAACAAGTATCAATGCTCTGCTTCCAGAGCTTTCTCTTCAGTCCTTTACAGGAAGTaGGTCTCCTCTGGACAGGGC | + |
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Preference number: 4 (lower is better) Translates to: MASTLNKYQCSASRAFSSVLYRK*VSSGQG Trigger: GCCCTGTCCAGAGGAGACCCACTTCCTGTAAAGGAC...TGAAGAGAAAGCTCTGGAAGCAGAGCATTGATACTTGTTTAATGTTGAAGCCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS-3UTR CCA 90 bp | TCAACATTAAACAAGTATCAATGCTCTGCTTCCAGAGCTTTCTCTTCAAGGCTTTGTCAGTCTTCTGTGTaGCCACAGGCATTTCAATTC | + |
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Preference number: 4 (lower is better) Translates to: STLNKYQCSASRAFSSRLCQSSV*PQAFQF Trigger: GAATTGAAATGCCTGTGGCCACACAGAAGACTGACA...AAGCCTTGAAGAGAAAGCTCTGGAAGCAGAGCATTGATACTTGTTTAATGTTGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS-3UTR CCA 90 bp | GGCTTCAACATTAAACAAGTATCAATGCTCTGCTTCCAGAGCTTTCTCTTCAAGTCTGAGCTTTTCTACTaGCAGGCACAAATTTTTCCA | + |
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Preference number: 4 (lower is better) Translates to: GFNIKQVSMLCFQSFLFKSELFY*QAQIFP Trigger: TGGAAAAATTTGTGCCTGCCAGTAGAAAAGCTCAGA...CTTGAAGAGAAAGCTCTGGAAGCAGAGCATTGATACTTGTTTAATGTTGAAGCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS GCA 90 bp | AGGGCTGAAAAATACCCCGCCGACCACTGCAGCACGTCCGCCGGCTaGGTACGGATGGCAGCCTTGGTGAACTGCTTGAGGATGTCCGGC | + |
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Preference number: 5 (lower is better) Translates to: RAEKYPADHCSTSAG*VRMAALVNCLRMSG Trigger: GCCGGACATCCTCAAGCAGTTCACCAAGGCTGCCATCCGTACGCAGCCGGCGGACGTGCTGCAGTGGTCGGCGGGGTATTTTTCAGCCCT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS TCA 90 bp | AGGTTTCAAAGGGGATGCGAGCAGGCCCGCCCTCCGGGTCAGAGGTaGGGATCTCACACACGTTCTTCATGGCCGTGTTCAGGGTCCTGC | + |
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Preference number: 5 (lower is better) Translates to: RFQRGCEQARPPGQR*GSHTRSSWPCSGSC Trigger: GCAGGACCCTGAACACGGCCATGAAGAACGTGTGTGAGATCCTCACCTCTGACCCGGAGGGCGGGCCTGCTCGCATCCCCTTTGAAACCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS TCA 90 bp | TTCAATTCTGTCCTTTACAGGAAGTGGGTCTCCTCTGGACAGGGCTaGAAAATACCCCGCCGACCACTGCAGCACGTCCGCCGGCTGCGT | + |
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Preference number: 5 (lower is better) Translates to: FNSVLYRKWVSSGQG*KIPRRPLQHVRRLR Trigger: ACGCAGCCGGCGGACGTGCTGCAGTGGTCGGCGGGGTATTTTTCAGCCCTGTCCAGAGGAGACCCACTTCCTGTAAAGGACAGAATTGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS CCA 90 bp | CCACAGGCATTTCAATTCTGTCCTTTACAGGAAGTGGGTCTCCTCTaGACAGGGCTGAAAAATACCCCGCCGACCACTGCAGCACGTCCG | + |
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Preference number: 5 (lower is better) Translates to: PQAFQFCPLQEVGLL*TGLKNTPPTTAARP Trigger: CGGACGTGCTGCAGTGGTCGGCGGGGTATTTTTCAGCCCTGTCCAGAGGAGACCCACTTCCTGTAAAGGACAGAATTGAAATGCCTGTGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS TCA 90 bp | TGTTCAGGGTCCTGCCCAGGGAGCTGCATCCGAGCGCTAAAAACTTaGTCCACTCTATTTTGTCCTCACATGGATCCAGCTCCAGGATCG | + |
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Preference number: 5 (lower is better) Translates to: CSGSCPGSCIRALKT*STLFCPHMDPAPGS Trigger: CGATCCTGGAGCTGGATCCATGTGAGGACAAAATAGAGTGGATCAAGTTTTTAGCGCTCGGATGCAGCTCCCTGGGCAGGACCCTGAACA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS CCA 90 bp | GGACTTTCAGGAGTCCCTGGGTCAGGCCTGTGTCAGTCTTCTGTGTaGCCACAGGCATTTCAATTCTGTCCTTTACAGGAAGTGGGTCTC | + |
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Preference number: 5 (lower is better) Translates to: GLSGVPGSGLCQSSV*PQAFQFCPLQEVGL Trigger: GAGACCCACTTCCTGTAAAGGACAGAATTGAAATGCCTGTGGCCACACAGAAGACTGACACAGGCCTGACCCAGGGACTCCTGAAAGTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS CCA 90 bp | TATTGCTTGTGGCTACACTGCTTGTGCAGGACTTTCAGGAGTCCCTaGGTCAGGCCTGTGTCAGTCTTCTGTGTGGCCACAGGCATTTCA | + |
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Preference number: 5 (lower is better) Translates to: YCLWLHCLCRTFRSP*VRPVSVFCVATGIS Trigger: TGAAATGCCTGTGGCCACACAGAAGACTGACACAGGCCTGACCCAGGGACTCCTGAAAGTCCTGCACAAGCAGTGTAGCCACAAGCAATA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS GCA 90 bp | TCAAGATCTGCTAACTCCACATATTGCTTGTGGCTACACTGCTTGTaGAGGACTTTCAGGAGTCCCTGGGTCAGGCCTGTGTCAGTCTTC | + |
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Preference number: 5 (lower is better) Translates to: SRSANSTYCLWLHCL*RTFRSPWVRPVSVF Trigger: GAAGACTGACACAGGCCTGACCCAGGGACTCCTGAAAGTCCTGCACAAGCAGTGTAGCCACAAGCAATATGTGGAGTTAGCAGATCTTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS-3UTR CAA 90 bp | GGTAATGACAAGCTGTATTTGGCGCCAAGGTTTCTCCTAAGCATGGCTTCAACAGTACGGATGGCAGCCTaGGTGAACTGCTTGAGGATG | + |
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Preference number: 5 (lower is better) Translates to: GNDKLYLAPRFLLSMASTVRMAA*VNCLRM Trigger: CATCCTCAAGCAGTTCACCAAGGCTGCCATCCGTAC...TGTTGAAGCCATGCTTAGGAGAAACCTTGGCGCCAAATACAGCTTGTCATTACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS-3UTR CAA 90 bp | CCTAAGCATGGCTTCAACATTAAACAAGTATCAATGCTCTGCTTCCAGAGCTTTGCCTTGGTGAACTGCTaGAGGATGTCCGGCAGCTCC | + |
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Preference number: 5 (lower is better) Translates to: PKHGFNIKQVSMLCFQSFALVNC*RMSGSS Trigger: GGAGCTGCCGGACATCCTCAAGCAGTTCACCAAGGC...AAAGCTCTGGAAGCAGAGCATTGATACTTGTTTAATGTTGAAGCCATGCTTAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS-3UTR CAA 90 bp | ACAGGTAATGACAAGCTGTATTTGGCGCCAAGGTTTCTCCTAAGCATGGCTTCATTGATCCACTCTATTTaGTCCTCACATGGATCCAGC | + |
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Preference number: 5 (lower is better) Translates to: TGNDKLYLAPRFLLSMASLIHSI*SSHGSS Trigger: GCTGGATCCATGTGAGGACAAAATAGAGTGGATCAA...TGAAGCCATGCTTAGGAGAAACCTTGGCGCCAAATACAGCTTGTCATTACCTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS-3UTR CAA 90 bp | TTCAACATTAAACAAGTATCAATGCTCTGCTTCCAGAGCTTTCTCTTCAAGGCTTTGTGGCTACACTGCTaGTGCAGGACTTTCAGGAGT | + |
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Preference number: 5 (lower is better) Translates to: FNIKQVSMLCFQSFLFKALWLHC*CRTFRS Trigger: ACTCCTGAAAGTCCTGCACAAGCAGTGTAGCCACAA...AGCCTTGAAGAGAAAGCTCTGGAAGCAGAGCATTGATACTTGTTTAATGTTGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS-3UTR CAA 90 bp | TCAACATTAAACAAGTATCAATGCTCTGCTTCCAGAGCTTTCTCTTCAAGGCTTCCGAGCGCTAAAAACTaGATCCACTCTATTTTGTCC | + |
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Preference number: 5 (lower is better) Translates to: STLNKYQCSASRAFSSRLPSAKN*IHSILS Trigger: GGACAAAATAGAGTGGATCAAGTTTTTAGCGCTCGG...AAGCCTTGAAGAGAAAGCTCTGGAAGCAGAGCATTGATACTTGTTTAATGTTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS GCA 72 bp | CCTCTGGACAGGGCTGAAAAATACCCCGCCGACCACTaGAGCACGTCCGCCGGCTGCGTACGGATGGCAGCC | + |
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Preference number: 6 (lower is better) Translates to: PLDRAEKYPADH*STSAGCVRMAA Trigger: GGCTGCCATCCGTACGCAGCCGGCGGACGTGCTGCAGTGGTCGGCGGGGTATTTTTCAGCCCTGTCCAGAGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS GCA 72 bp | AAATACCCCGCCGACCACTGCAGCACGTCCGCCGGCTaGGTACGGATGGCAGCCTTGGTGAACTGCTTGAGG | + |
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Preference number: 6 (lower is better) Translates to: KYPADHCSTSAG*VRMAALVNCLR Trigger: CCTCAAGCAGTTCACCAAGGCTGCCATCCGTACGCAGCCGGCGGACGTGCTGCAGTGGTCGGCGGGGTATTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS TCA 72 bp | AGGGGATGCGAGCAGGCCCGCCCTCCGGGTCAGAGGTaGGGATCTCACACACGTTCTTCATGGCCGTGTTCA | + |
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Preference number: 6 (lower is better) Translates to: RGCEQARPPGQR*GSHTRSSWPCS Trigger: TGAACACGGCCATGAAGAACGTGTGTGAGATCCTCACCTCTGACCCGGAGGGCGGGCCTGCTCGCATCCCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS TCA 72 bp | GTCCTTTACAGGAAGTGGGTCTCCTCTGGACAGGGCTaGAAAATACCCCGCCGACCACTGCAGCACGTCCGC | + |
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Preference number: 6 (lower is better) Translates to: VLYRKWVSSGQG*KIPRRPLQHVR Trigger: GCGGACGTGCTGCAGTGGTCGGCGGGGTATTTTTCAGCCCTGTCCAGAGGAGACCCACTTCCTGTAAAGGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS GCA 72 bp | GCTAACTCCACATATTGCTTGTGGCTACACTGCTTGTaGAGGACTTTCAGGAGTCCCTGGGTCAGGCCTGTG | + |
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Preference number: 6 (lower is better) Translates to: ANSTYCLWLHCL*RTFRSPWVRPV Trigger: CACAGGCCTGACCCAGGGACTCCTGAAAGTCCTGCACAAGCAGTGTAGCCACAAGCAATATGTGGAGTTAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS CAA 90 bp | GTGTTCAGGGTCCTGCCCAGGGAGCTGCATCCGAGCGCTAAAAACTaGATCCACTCTATTTTGTCCTCACATGGATCCAGCTCCAGGATC | + |
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Preference number: 6 (lower is better) Translates to: VFRVLPRELHPSAKN*IHSILSSHGSSSRI Trigger: GATCCTGGAGCTGGATCCATGTGAGGACAAAATAGAGTGGATCAAGTTTTTAGCGCTCGGATGCAGCTCCCTGGGCAGGACCCTGAACAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS CAA 72 bp | GTCCTGCCCAGGGAGCTGCATCCGAGCGCTAAAAACTaGATCCACTCTATTTTGTCCTCACATGGATCCAGC | + |
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Preference number: 6 (lower is better) Translates to: VLPRELHPSAKN*IHSILSSHGSS Trigger: GCTGGATCCATGTGAGGACAAAATAGAGTGGATCAAGTTTTTAGCGCTCGGATGCAGCTCCCTGGGCAGGAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS TCA 72 bp | TCCTGCCCAGGGAGCTGCATCCGAGCGCTAAAAACTTaGTCCACTCTATTTTGTCCTCACATGGATCCAGCT | + |
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Preference number: 6 (lower is better) Translates to: SCPGSCIRALKT*STLFCPHMDPA Trigger: AGCTGGATCCATGTGAGGACAAAATAGAGTGGATCAAGTTTTTAGCGCTCGGATGCAGCTCCCTGGGCAGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS CCA 72 bp | TTTCAATTCTGTCCTTTACAGGAAGTGGGTCTCCTCTaGACAGGGCTGAAAAATACCCCGCCGACCACTGCA | + |
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Preference number: 6 (lower is better) Translates to: FQFCPLQEVGLL*TGLKNTPPTTA Trigger: TGCAGTGGTCGGCGGGGTATTTTTCAGCCCTGTCCAGAGGAGACCCACTTCCTGTAAAGGACAGAATTGAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS GCA 72 bp | TTCCACTTCTTCTCAAGATCTGCTAACTCCACATATTaGTTGTGGCTACACTGCTTGTGCAGGACTTTCAGG | + |
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Preference number: 6 (lower is better) Translates to: FHFFSRSANSTY*LWLHCLCRTFR Trigger: CCTGAAAGTCCTGCACAAGCAGTGTAGCCACAAGCAATATGTGGAGTTAGCAGATCTTGAGAAGAAGTGGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS CCA 72 bp | TGGATCCAGCTCCAGGATCGTTCTGAGCTTTTCTACTaGCAGGCACAAATTTTTCCACTTCTTCTCAAGATC | + |
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Preference number: 6 (lower is better) Translates to: WIQLQDRSELFY*QAQIFPLLLKI Trigger: GATCTTGAGAAGAAGTGGAAAAATTTGTGCCTGCCAGTAGAAAAGCTCAGAACGATCCTGGAGCTGGATCCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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| CDS CAA 72 bp | CACTTCTTCTCAAGATCTGCTAACTCCACATATTGCTaGTGGCTACACTGCTTGTGCAGGACTTTCAGGAGT | + |
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Preference number: 6 (lower is better) Translates to: HFFSRSANSTYC*WLHCLCRTFRS Trigger: ACTCCTGAAAGTCCTGCACAAGCAGTGTAGCCACAAGCAATATGTGGAGTTAGCAGATCTTGAGAAGAAGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110408.3 |
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