Pregenerated sensors for ROPN1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022832

Ensembl transcript IDs: ENSMUST00000023530.5, ENSMUST00000148562.8

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR TCA 90 bp	AGAAAATTGACTTTAGATGGTGCATGGTGTTCAGCTATTCTGAAGTACAGCCACCGGCTGCCCACTGTATaGGATCAGGAGGCTGGGTCC	+
Preference number: 4 (lower is better) Translates to: RKLTLDGAWCSAILKYSHRLPTV*DQEAGS Trigger: GGACCCAGCCTCCTGATCTCATACAGTGGGCAGCCG...GTGGCTGTACTTCAGAATAGCTGAACACCATGCACCATCTAAAGTCAATTTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023530.5
CDS-3UTR CCA 90 bp	AGAAAATTGACTTTAGATGGTGCATGGTGTTCAGCTATTCTGAAGTACAGCCACAGCACCTTCCACATCTaGGCCAGCTCATCTGCGTGG	+
Preference number: 4 (lower is better) Translates to: RKLTLDGAWCSAILKYSHSTFHI*ASSSAW Trigger: CCACGCAGATGAGCTGGCCCAGATGTGGAAGGTGCT...GTGGCTGTACTTCAGAATAGCTGAACACCATGCACCATCTAAAGTCAATTTTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023530.5
CDS-3UTR TCA 90 bp	AGAAAATTGACTTTAGATGGTGCATGGTGTTCAGCTATTCTGAAGTACAGCCACCCTGCTAACGTGGGATaGAGAGATTTCCCCATCCAC	+
Preference number: 4 (lower is better) Translates to: RKLTLDGAWCSAILKYSHPANVG*RDFPIH Trigger: GTGGATGGGGAAATCTCTTCATCCCACGTTAGCAGG...GTGGCTGTACTTCAGAATAGCTGAACACCATGCACCATCTAAAGTCAATTTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023530.5
CDS-3UTR GCA 90 bp	AGAAAATTGACTTTAGATGGTGCATGGTGTTCAGCTATTCTGAAGTACAGCCACGCAGCTCCGGTGGGATaGATACTTGCTTGTCTGTCT	+
Preference number: 4 (lower is better) Translates to: RKLTLDGAWCSAILKYSHAAPVG*ILACLS Trigger: AGACAGACAAGCAAGTATGCATCCCACCGGAGCTGC...GTGGCTGTACTTCAGAATAGCTGAACACCATGCACCATCTAAAGTCAATTTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023530.5
CDS-3UTR CCA 90 bp	AGAAAATTGACTTTAGATGGTGCATGGTGTTCAGCTATTCTGAAGTACAGCCACTCAGCTCAGCCCAGTTaGACAAAGGGATTTGTTCAG	+
Preference number: 4 (lower is better) Translates to: RKLTLDGAWCSAILKYSHSAQPS*TKGFVQ Trigger: CTGAACAAATCCCTTTGTCCAACTGGGCTGAGCTGA...GTGGCTGTACTTCAGAATAGCTGAACACCATGCACCATCTAAAGTCAATTTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023530.5
CDS-3UTR CCA 90 bp	AGAAAATTGACTTTAGATGGTGCATGGTGTTCAGCTATTCTGAAGTACAGCCACGGTGGTCCTCCATCATaGTCGGAGGATAAAACTTCA	+
Preference number: 4 (lower is better) Translates to: RKLTLDGAWCSAILKYSHGGPPS*SEDKTS Trigger: TGAAGTTTTATCCTCCGACCATGATGGAGGACCACC...GTGGCTGTACTTCAGAATAGCTGAACACCATGCACCATCTAAAGTCAATTTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023530.5
CDS-3UTR CAA 90 bp	AGAAAATTGACTTTAGATGGTGCATGGTGTTCAGCTATTCTGAAGTACAGCCACGTCAGCTCAGCCCAGTaGGACAAAGGGATTTGTTCA	+
Preference number: 5 (lower is better) Translates to: RKLTLDGAWCSAILKYSHVSSAQ*DKGICS Trigger: TGAACAAATCCCTTTGTCCAACTGGGCTGAGCTGAC...GTGGCTGTACTTCAGAATAGCTGAACACCATGCACCATCTAAAGTCAATTTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023530.5
CDS CAA 72 bp	CTCAGGTGTCAGCTCAGCCCAGTTGGACAAAGGGATTaGTTCAGACCTCTCTCTCACTGGAGGAATCTCTCC	+
Preference number: 6 (lower is better) Translates to: LRCQLSPVGQRD*FRPLSHWRNLS Trigger: GGAGAGATTCCTCCAGTGAGAGAGAGGTCTGAACAAATCCCTTTGTCCAACTGGGCTGAGCTGACACCTGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023530.5 ENSMUST00000148562.8
CDS CCA 72 bp	AAATATTCGGCTGCCCACTGTATGAGATCAGGAGGCTaGGTCCGAATGGCATCTTTGGTAAACTGCTTCAGC	+
Preference number: 6 (lower is better) Translates to: KYSAAHCMRSGG*VRMASLVNCFS Trigger: GCTGAAGCAGTTTACCAAAGATGCCATTCGGACCCAGCCTCCTGATCTCATACAGTGGGCAGCCGAATATTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023530.5 ENSMUST00000148562.8