Pregenerated sensors for ROMO1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000067847

Ensembl transcript IDs: ENSMUST00000088610.11, ENSMUST00000109597.10, ENSMUST00000109598.4, ENSMUST00000119950.2

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR CCA 90 bp	CGAGAAGAAAACAACTTTATTATTGTACAAGGGTCGAAATGGATGGGGAAGTTTCGCGGTCGAAGCAGCTaGGCTGGGACTGCCCGTAGG	+
Preference number: 4 (lower is better) Translates to: REENNFIIVQGSKWMGKFRGRSS*AGTARR Trigger: CCTACGGGCAGTCCCAGCCCAGCTGCTTCGACCGCG...AAACTTCCCCATCCATTTCGACCCTTGTACAATAATAAAGTTGTTTTCTTCTCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000088610.11 ENSMUST00000109597.10 ENSMUST00000119950.2
CDS-3UTR CCA 90 bp	AACGAGAAGAAAACAACTTTATTATTGTACAAGGGTCGAAATGGATGGGGAAGTCGCGGTCGAAGCAGCTaGGCTGGGACTGCCCGTAGG	+
Preference number: 4 (lower is better) Translates to: NEKKTTLLLYKGRNGWGSRGRSS*AGTARR Trigger: CCTACGGGCAGTCCCAGCCCAGCTGCTTCGACCGCG...ACTTCCCCATCCATTTCGACCCTTGTACAATAATAAAGTTGTTTTCTTCTCGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000088610.11 ENSMUST00000109597.10 ENSMUST00000119950.2
CDS-3UTR TCA 90 bp	ACGAGAAGAAAACAACTTTATTATTGTACAAGGGTCGAAATGGATGGGGAAGTTCCACTGCGCAACCCATaGCGAAGCCCATCTTCACGC	+
Preference number: 4 (lower is better) Translates to: TRRKQLYYCTRVEMDGEVPLRNP*RSPSSR Trigger: GCGTGAAGATGGGCTTCGTCATGGGTTGCGCAGTGG...AACTTCCCCATCCATTTCGACCCTTGTACAATAATAAAGTTGTTTTCTTCTCGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000088610.11 ENSMUST00000109597.10 ENSMUST00000119950.2
CDS-3UTR TCA 90 bp	GAAGAAAACAACTTTATTATTGTACAAGGGTCGAAATGGATGGGGAAGTTTAGGCCACTGCGCAACCCATaGCGAAGCCCATCTTCACGC	+
Preference number: 4 (lower is better) Translates to: EENNFIIVQGSKWMGKFRPLRNP*RSPSSR Trigger: GCGTGAAGATGGGCTTCGTCATGGGTTGCGCAGTGG...CCTAAACTTCCCCATCCATTTCGACCCTTGTACAATAATAAAGTTGTTTTCTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000088610.11 ENSMUST00000109597.10 ENSMUST00000119950.2
CDS-3UTR TCA 90 bp	AAGAAAACAACTTTATTATTGTACAAGGGTCGAAATGGATGGGGAAGTTTAGGTCCACTGCGCAACCCATaGCGAAGCCCATCTTCACGC	+
Preference number: 4 (lower is better) Translates to: KKTTLLLYKGRNGWGSLGPLRNP*RSPSSR Trigger: GCGTGAAGATGGGCTTCGTCATGGGTTGCGCAGTGG...ACCTAAACTTCCCCATCCATTTCGACCCTTGTACAATAATAAAGTTGTTTTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000088610.11 ENSMUST00000109597.10 ENSMUST00000119950.2
CDS-3UTR TCA 90 bp	GAGAAGAAAACAACTTTATTATTGTACAAGGGTCGAAATGGATGGGGAAGTTTACCATTCCAATGGCCATaGAAGTGCCAAACGTGCCGC	+
Preference number: 4 (lower is better) Translates to: EKKTTLLLYKGRNGWGSLPFQWP*KCQTCR Trigger: GCGGCACGTTTGGCACTTTCATGGCCATTGGAATGG...TAAACTTCCCCATCCATTTCGACCCTTGTACAATAATAAAGTTGTTTTCTTCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000088610.11 ENSMUST00000109597.10 ENSMUST00000119950.2
CDS TCA 90 bp	AGGTGCCGAACAGCGCCCCGGCCGCCATACCCACTGCGCAACCCATaGCGAAGCCCATCTTCACGCGGTCGAAGCAGCTGGGCTGGGACT	+
Preference number: 5 (lower is better) Translates to: RCRTAPRPPYPLRNP*RSPSSRGRSSWAGT Trigger: AGTCCCAGCCCAGCTGCTTCGACCGCGTGAAGATGGGCTTCGTCATGGGTTGCGCAGTGGGTATGGCGGCCGGGGCGCTGTTCGGCACCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000088610.11 ENSMUST00000109597.10 ENSMUST00000109598.4 ENSMUST00000119950.2
CDS TCA 72 bp	ACAGCGCCCCGGCCGCCATACCCACTGCGCAACCCATaGCGAAGCCCATCTTCACGCGGTCGAAGCAGCTGG	+
Preference number: 6 (lower is better) Translates to: TAPRPPYPLRNP*RSPSSRGRSSW Trigger: CCAGCTGCTTCGACCGCGTGAAGATGGGCTTCGTCATGGGTTGCGCAGTGGGTATGGCGGCCGGGGCGCTGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000088610.11 ENSMUST00000109597.10 ENSMUST00000109598.4 ENSMUST00000119950.2