Pregenerated sensors for ROM1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000071648Ensembl transcript IDs: ENSMUST00000096242.5
Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCGCCCTCATCTGTTCTCAACCTTGGTGGTTTCCAACGAGACAGCTaGGTTCCAGGACACCTGGACTTCTCATTCCAGCCCAGCTCCGCT | + |
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Preference number: 1 (lower is better) Translates to: SPSSVLNLGGFQRDS*VPGHLDFSFQPSSA Trigger: AGCGGAGCTGGGCTGGAATGAGAAGTCCAGGTGTCCTGGAACCCAGCTGTCTCGTTGGAAACCACCAAGGTTGAGAACAGATGAGGGCGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| 3UTR CAA 90 bp | CTGGGTTCCAGGACACCTGGACTTCTCATTCCAGCCCAGCTCCGCTaGCTCTTAACTCCTATAACCCCAGGGACCTTTCCTTCCCTGAGT | + |
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Preference number: 2 (lower is better) Translates to: LGSRTPGLLIPAQLR*LLTPITPGTFPSLS Trigger: ACTCAGGGAAGGAAAGGTCCCTGGGGTTATAGGAGTTAAGAGCAAGCGGAGCTGGGCTGGAATGAGAAGTCCAGGTGTCCTGGAACCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| 3UTR-3UTR CCA 90 bp | AGTCCTTTGGTTGTCACTTCCCTGTCGCCCTCATCTGTTCTCAACCTTGGTGGTTTCCAACGAGACAGCTaGGTTCCAGGACACCTGGAC | + |
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Preference number: 2 (lower is better) Translates to: SPLVVTSLSPSSVLNLGGFQRDS*VPGHLD Trigger: GTCCAGGTGTCCTGGAACCCAGCTGTCTCGTTGGAA...ACCACCAAGGTTGAGAACAGATGAGGGCGACAGGGAAGTGACAACCAAAGGACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| 3UTR CCA 72 bp | GTGGTTTCCAACGAGACAGCTGGGTTCCAGGACACCTaGACTTCTCATTCCAGCCCAGCTCCGCTTGCTCTT | + |
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Preference number: 3 (lower is better) Translates to: VVSNETAGFQDT*TSHSSPAPLAL Trigger: AAGAGCAAGCGGAGCTGGGCTGGAATGAGAAGTCCAGGTGTCCTGGAACCCAGCTGTCTCGTTGGAAACCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS-3UTR GCA 90 bp | GTCGCCCTCATCTGTTCTCAACCTTGGTGGTTTCCAACGAGACAGCTGGGTTCCAGCTGCATCCAGACTTaGCCGGCTGGCTCCTGCGCC | + |
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Preference number: 4 (lower is better) Translates to: VALICSQPWWFPTRQLGSSCIQT*PAGSCA Trigger: GGCGCAGGAGCCAGCCGGGCAAGTCTGGATGCAGCT...GGAACCCAGCTGTCTCGTTGGAAACCACCAAGGTTGAGAACAGATGAGGGCGAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS-3UTR CCA 90 bp | CGCCCTCATCTGTTCTCAACCTTGGTGGTTTCCAACGAGACAGCTGGGTTCCAGGGCCTCCTCAGGTGCTaGCTTGTGGGCAAGCCCTCC | + |
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Preference number: 4 (lower is better) Translates to: RPHLFSTLVVSNETAGFQGLLRC*LVGKPS Trigger: GGAGGGCTTGCCCACAAGCCAGCACCTGAGGAGGCC...CTGGAACCCAGCTGTCTCGTTGGAAACCACCAAGGTTGAGAACAGATGAGGGCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS-3UTR GCA 90 bp | TTTCCAACGAGACAGCTGGGTTCCAGGACACCTGGACTTCTCATTCCAGCCCAGGAGGCCACCGACCAATaGCAGCAGCCAGGAGAGGAG | + |
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Preference number: 4 (lower is better) Translates to: FPTRQLGSRTPGLLIPAQEATDQ*QQPGEE Trigger: CTCCTCTCCTGGCTGCTGGCATTGGTCGGTGGCCTC...CTGGGCTGGAATGAGAAGTCCAGGTGTCCTGGAACCCAGCTGTCTCGTTGGAAA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS-3UTR GCA 90 bp | CAGGACACCTGGACTTCTCATTCCAGCCCAGCTCCGCTTGCTCTTAACTCCTATTGGGGCCTCCTCAGGTaGTGGCTTGTGGGCAAGCCC | + |
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Preference number: 4 (lower is better) Translates to: QDTWTSHSSPAPLALNSYWGLLR*WLVGKP Trigger: GGGCTTGCCCACAAGCCAGCACCTGAGGAGGCCCCA...ATAGGAGTTAAGAGCAAGCGGAGCTGGGCTGGAATGAGAAGTCCAGGTGTCCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS-3UTR CCA 90 bp | TTTCCAACGAGACAGCTGGGTTCCAGGACACCTGGACTTCTCATTCCAGCCCAGAAACGGATACGGGGTTaGAGGGGCAGCACCACGGGC | + |
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Preference number: 4 (lower is better) Translates to: FPTRQLGSRTPGLLIPAQKRIRG*RGSTTG Trigger: GCCCGTGGTGCTGCCCCTCCAACCCCGTATCCGTTT...CTGGGCTGGAATGAGAAGTCCAGGTGTCCTGGAACCCAGCTGTCTCGTTGGAAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS-3UTR CCA 90 bp | CTCAACCTTGGTGGTTTCCAACGAGACAGCTGGGTTCCAGGACACCTGGACTTCTCAGGTGCTGGCTTGTaGGCAAGCCCTCCCTGTAGC | + |
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Preference number: 4 (lower is better) Translates to: LNLGGFQRDSWVPGHLDFSGAGL*ASPPCS Trigger: GCTACAGGGAGGGCTTGCCCACAAGCCAGCACCTGA...GAAGTCCAGGTGTCCTGGAACCCAGCTGTCTCGTTGGAAACCACCAAGGTTGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS-3UTR GCA 90 bp | TTGGTGGTTTCCAACGAGACAGCTGGGTTCCAGGACACCTGGACTTCTCATTCCAGGGTGCCAGGAAGGTaGCAAGGTGCCCCAGCTGTA | + |
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Preference number: 4 (lower is better) Translates to: LVVSNETAGFQDTWTSHSRVPGR*QGAPAV Trigger: TACAGCTGGGGCACCTTGGCACCTTCCTGGCACCCT...GGAATGAGAAGTCCAGGTGTCCTGGAACCCAGCTGTCTCGTTGGAAACCACCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS-3UTR CCA 90 bp | TTGGTGGTTTCCAACGAGACAGCTGGGTTCCAGGACACCTGGACTTCTCATTCCTCCAGCAGCACTTCATaGCACCCTTGGGCCCAGAGG | + |
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Preference number: 4 (lower is better) Translates to: LVVSNETAGFQDTWTSHSSSSTS*HPWAQR Trigger: CCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGA...GGAATGAGAAGTCCAGGTGTCCTGGAACCCAGCTGTCTCGTTGGAAACCACCAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS-3UTR TCA 90 bp | TCCCTGTCGCCCTCATCTGTTCTCAACCTTGGTGGTTTCCAACGAGACAGCTGGCCTCCAGTCCCTGGTTaGGACTTACTGGCAAAGCCA | + |
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Preference number: 4 (lower is better) Translates to: SLSPSSVLNLGGFQRDSWPPVPG*DLLAKP Trigger: TGGCTTTGCCAGTAAGTCTCAACCAGGGACTGGAGG...CCAGCTGTCTCGTTGGAAACCACCAAGGTTGAGAACAGATGAGGGCGACAGGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS-3UTR TCA 90 bp | CAGGACACCTGGACTTCTCATTCCAGCCCAGCTCCGCTTGCTCTTAACTCCTATATCAGACGTTTGGCCTaGCAGCGTCCAGGCACCTCT | + |
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Preference number: 4 (lower is better) Translates to: QDTWTSHSSPAPLALNSYIRRLA*QRPGTS Trigger: AGAGGTGCCTGGACGCTGTCAGGCCAAACGTCTGAT...ATAGGAGTTAAGAGCAAGCGGAGCTGGGCTGGAATGAGAAGTCCAGGTGTCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS-3UTR GCA 90 bp | CGCCCTCATCTGTTCTCAACCTTGGTGGTTTCCAACGAGACAGCTGGGTTCCAGAGGAGAGGAGCCAGATaGCCTGTGCCAAACGGATAC | + |
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Preference number: 4 (lower is better) Translates to: RPHLFSTLVVSNETAGFQRRGAR*PVPNGY Trigger: GTATCCGTTTGGCACAGGGCATCTGGCTCCTCTCCT...CTGGAACCCAGCTGTCTCGTTGGAAACCACCAAGGTTGAGAACAGATGAGGGCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS-3UTR CCA 90 bp | CCTTTGGTTGTCACTTCCCTGTCGCCCTCATCTGTTCTCAACCTTGGTGGTTTCGCTGCCAGGGCAGTCTaGGGCAGAGCAGGGAATGAA | + |
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Preference number: 4 (lower is better) Translates to: PLVVTSLSPSSVLNLGGFAARAV*GRAGNE Trigger: TTCATTCCCTGCTCTGCCCCAGACTGCCCTGGCAGC...GAAACCACCAAGGTTGAGAACAGATGAGGGCGACAGGGAAGTGACAACCAAAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS-3UTR CCA 90 bp | GTTCTCAACCTTGGTGGTTTCCAACGAGACAGCTGGGTTCCAGGACACCTGGACTGGCGCCCGCAGCAATaGTACCTCAACTGCAACTCA | + |
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Preference number: 4 (lower is better) Translates to: VLNLGGFQRDSWVPGHLDWRPQQ*YLNCNS Trigger: TGAGTTGCAGTTGAGGTACCATTGCTGCGGGCGCCA...GTCCAGGTGTCCTGGAACCCAGCTGTCTCGTTGGAAACCACCAAGGTTGAGAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS-3UTR CCA 90 bp | TTTCCAACGAGACAGCTGGGTTCCAGGACACCTGGACTTCTCATTCCAGCCCAGCAAGGCCGGGGTGAGTaGGGATTACAACAGGAGAAG | + |
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Preference number: 4 (lower is better) Translates to: FPTRQLGSRTPGLLIPAQQGRGE*GLQQEK Trigger: CTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTG...CTGGGCTGGAATGAGAAGTCCAGGTGTCCTGGAACCCAGCTGTCTCGTTGGAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS-3UTR CCA 90 bp | GTCGCCCTCATCTGTTCTCAACCTTGGTGGTTTCCAACGAGACAGCTGGGTTCCCCCAGAGGTTTAGGTTaGGCTGCCGAGGATCGAAGA | + |
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Preference number: 4 (lower is better) Translates to: VALICSQPWWFPTRQLGSPRGLG*AAEDRR Trigger: TCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGG...GGAACCCAGCTGTCTCGTTGGAAACCACCAAGGTTGAGAACAGATGAGGGCGAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS-3UTR CCA 90 bp | AGTCCTTTGGTTGTCACTTCCCTGTCGCCCTCATCTGTTCTCAACCTTGGTGGTAGGTTCTTCATCTGGTaGGGCCTCCTCAGGTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: SPLVVTSLSPSSVLNLGGRFFIW*GLLRCW Trigger: CCAGCACCTGAGGAGGCCCCACCAGATGAAGAACCT...ACCACCAAGGTTGAGAACAGATGAGGGCGACAGGGAAGTGACAACCAAAGGACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| 3UTR CAA 72 bp | AGGACACCTGGACTTCTCATTCCAGCCCAGCTCCGCTaGCTCTTAACTCCTATAACCCCAGGGACCTTTCCT | + |
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Preference number: 4 (lower is better) Translates to: RTPGLLIPAQLR*LLTPITPGTFP Trigger: AGGAAAGGTCCCTGGGGTTATAGGAGTTAAGAGCAAGCGGAGCTGGGCTGGAATGAGAAGTCCAGGTGTCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS-3UTR TCA 90 bp | CTAGAAACATTCTCTAGTCCTTTGGTTGTCACTTCCCTGTCGCCCTCATCTGTTCAGGCAAGGCCGGGGTaGGTGGGGATTACAACAGGA | + |
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Preference number: 4 (lower is better) Translates to: LETFSSPLVVTSLSPSSVQARPG*VGITTG Trigger: TCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTG...AACAGATGAGGGCGACAGGGAAGTGACAACCAAAGGACTAGAGAATGTTTCTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS-3UTR GCA 90 bp | GTCGCCCTCATCTGTTCTCAACCTTGGTGGTTTCCAACGAGACAGCTGGGTTCCAGGAGCACTAGAATCTaGAGCAATAAGGTGACAGCC | + |
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Preference number: 4 (lower is better) Translates to: VALICSQPWWFPTRQLGSRSTRI*SNKVTA Trigger: GGCTGTCACCTTATTGCTGCAGATTCTAGTGCTCCT...GGAACCCAGCTGTCTCGTTGGAAACCACCAAGGTTGAGAACAGATGAGGGCGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS-3UTR CCA 90 bp | AGTCCTTTGGTTGTCACTTCCCTGTCGCCCTCATCTGTTCTCAACCTTGGTGGTCCCTCCTCCAGTCCCTaGTTGAGACTTACTGGCAAA | + |
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Preference number: 4 (lower is better) Translates to: SPLVVTSLSPSSVLNLGGPSSSP*LRLTGK Trigger: TTTGCCAGTAAGTCTCAACCAGGGACTGGAGGAGGG...ACCACCAAGGTTGAGAACAGATGAGGGCGACAGGGAAGTGACAACCAAAGGACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS-3UTR TCA 90 bp | CTAGAAACATTCTCTAGTCCTTTGGTTGTCACTTCCCTGTCGCCCTCATCTGTTCTCCTTCCCCATCAATaGCTCCTCCAAGGCCCTCCA | + |
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Preference number: 4 (lower is better) Translates to: LETFSSPLVVTSLSPSSVLLPHQ*LLQGPP Trigger: TGGAGGGCCTTGGAGGAGTCATTGATGGGGAAGGAG...AACAGATGAGGGCGACAGGGAAGTGACAACCAAAGGACTAGAGAATGTTTCTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS-3UTR GCA 90 bp | GTCGCCCTCATCTGTTCTCAACCTTGGTGGTTTCCAACGAGACAGCTGGGTTCCATAAGCCTTCCACATTaGTCTGGATCCGGTCAACTA | + |
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Preference number: 4 (lower is better) Translates to: VALICSQPWWFPTRQLGSISLPH*SGSGQL Trigger: TAGTTGACCGGATCCAGAGCAATGTGGAAGGCTTAT...GGAACCCAGCTGTCTCGTTGGAAACCACCAAGGTTGAGAACAGATGAGGGCGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS-3UTR GCA 90 bp | AGAATCTGGATGCTAGAAACATTCTCTAGTCCTTTGGTTGTCACTTCCCTGTCGAGGAAGGTGCCAAGGTaGCCCAGCTGTACCAGAAGG | + |
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Preference number: 4 (lower is better) Translates to: RIWMLETFSSPLVVTSLSRKVPR*PSCTRR Trigger: CCTTCTGGTACAGCTGGGGCACCTTGGCACCTTCCT...CGACAGGGAAGTGACAACCAAAGGACTAGAGAATGTTTCTAGCATCCAGATTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS-3UTR CCA 90 bp | CACAAACTTTATTGTAGAATCTGGATGCTAGAAACATTCTCTAGTCCTTTGGTTCCAGACTTGCCCGGCTaGCTCCTGCGCCTCCTAGCC | + |
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Preference number: 4 (lower is better) Translates to: HKLYCRIWMLETFSSPLVPDLPG*LLRLLA Trigger: GGCTAGGAGGCGCAGGAGCCAGCCGGGCAAGTCTGG...AACCAAAGGACTAGAGAATGTTTCTAGCATCCAGATTCTACAATAAAGTTTGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS-3UTR GCA 90 bp | AGAATCTGGATGCTAGAAACATTCTCTAGTCCTTTGGTTGTCACTTCCCTGTCGGTGCCTGATAAACCCTaGAGGTGTTCCAGCAGCACT | + |
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Preference number: 4 (lower is better) Translates to: RIWMLETFSSPLVVTSLSVPDKP*RCSSST Trigger: AGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCAC...CGACAGGGAAGTGACAACCAAAGGACTAGAGAATGTTTCTAGCATCCAGATTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS-3UTR CCA 90 bp | CTAGAAACATTCTCTAGTCCTTTGGTTGTCACTTCCCTGTCGCCCTCATCTGTTCAGCTAGAACTTCCTTaGGAGGTTCTTCATCTGGTG | + |
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Preference number: 4 (lower is better) Translates to: LETFSSPLVVTSLSPSSVQLELP*EVLHLV Trigger: CACCAGATGAAGAACCTCCCAAGGAAGTTCTAGCTG...AACAGATGAGGGCGACAGGGAAGTGACAACCAAAGGACTAGAGAATGTTTCTAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS-3UTR TCA 90 bp | CACAAACTTTATTGTAGAATCTGGATGCTAGAAACATTCTCTAGTCCTTTGGTTCGGTTGCTGACCCACTaGACACCAAACCAATCCTTG | + |
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Preference number: 4 (lower is better) Translates to: HKLYCRIWMLETFSSPLVRLLTH*TPNQSL Trigger: CAAGGATTGGTTTGGTGTTCAGTGGGTCAGCAACCG...AACCAAAGGACTAGAGAATGTTTCTAGCATCCAGATTCTACAATAAAGTTTGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS-3UTR CCA 90 bp | CACAAACTTTATTGTAGAATCTGGATGCTAGAAACATTCTCTAGTCCTTTGGTTACTTCATGGCACCCTTaGGCCCAGAGGTTTAGGTTG | + |
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Preference number: 4 (lower is better) Translates to: HKLYCRIWMLETFSSPLVTSWHP*AQRFRL Trigger: CAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGT...AACCAAAGGACTAGAGAATGTTTCTAGCATCCAGATTCTACAATAAAGTTTGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS-3UTR GCA 90 bp | AAACTTTATTGTAGAATCTGGATGCTAGAAACATTCTCTAGTCCTTTGGTTGTCGAATACTTCCCAGTGTaGCTGATAAACCCTGCAGGT | + |
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Preference number: 4 (lower is better) Translates to: KLYCRIWMLETFSSPLVVEYFPV*LINPAG Trigger: ACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTC...GACAACCAAAGGACTAGAGAATGTTTCTAGCATCCAGATTCTACAATAAAGTTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS GCA 90 bp | GAGGGTGCCAGGAAGGTGCCAAGGTGCCCCAGCTGTACCAGAAGGTaGCCGCTACAAAGGAGGGTGAGGCCACCGACCAATGCCAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: EGARKVPRCPSCTRR*PLQRRVRPPTNASS Trigger: GCTGCTGGCATTGGTCGGTGGCCTCACCCTCCTTTGTAGCGGGCACCTTCTGGTACAGCTGGGGCACCTTGGCACCTTCCTGGCACCCTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS GCA 90 bp | GGCAGAGCAGGGAATGAACAAGAGGGTGCCAGGAAGGTGCCAAGGTaGCCCAGCTGTACCAGAAGGTGCCCGCTACAAAGGAGGGTGAGG | + |
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Preference number: 5 (lower is better) Translates to: GRAGNEQEGARKVPR*PSCTRRCPLQRRVR Trigger: CCTCACCCTCCTTTGTAGCGGGCACCTTCTGGTACAGCTGGGGCACCTTGGCACCTTCCTGGCACCCTCTTGTTCATTCCCTGCTCTGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS GCA 90 bp | CAGTCTGGGGCAGAGCAGGGAATGAACAAGAGGGTGCCAGGAAGGTaGCAAGGTGCCCCAGCTGTACCAGAAGGTGCCCGCTACAAAGGA | + |
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Preference number: 5 (lower is better) Translates to: QSGAEQGMNKRVPGR*QGAPAVPEGARYKG Trigger: TCCTTTGTAGCGGGCACCTTCTGGTACAGCTGGGGCACCTTGGCACCTTCCTGGCACCCTCTTGTTCATTCCCTGCTCTGCCCCAGACTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS CCA 90 bp | GTTCCAGCAGCACTTCATGGCACCCTTGGGCCCAGAGGTTTAGGTTaGGCTGCCGAGGATCGAAGAGTGGATGGGCATAGGGGTCCGAGA | + |
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Preference number: 5 (lower is better) Translates to: VPAALHGTLGPRGLG*AAEDRRVDGHRGPR Trigger: TCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS CCA 90 bp | CCCAGTGTGCCTGATAAACCCTGCAGGTGTTCCAGCAGCACTTCATaGCACCCTTGGGCCCAGAGGTTTAGGTTGGGCTGCCGAGGATCG | + |
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Preference number: 5 (lower is better) Translates to: PSVPDKPCRCSSSTS*HPWAQRFRLGCRGS Trigger: CGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS-3UTR CAA 90 bp | CGCCCTCATCTGTTCTCAACCTTGGTGGTTTCCAACGAGACAGCTGGGTTCCAGCAAACGGATACGGGGTaGGAGGGGCAGCACCACGGG | + |
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Preference number: 5 (lower is better) Translates to: RPHLFSTLVVSNETAGFQQTDTG*EGQHHG Trigger: CCCGTGGTGCTGCCCCTCCAACCCCGTATCCGTTTG...CTGGAACCCAGCTGTCTCGTTGGAAACCACCAAGGTTGAGAACAGATGAGGGCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS-3UTR CAA 90 bp | TCCCTGTCGCCCTCATCTGTTCTCAACCTTGGTGGTTTCCAACGAGACAGCTGGTCCTCAGGTGCTGGCTaGTGGGCAAGCCCTCCCTGT | + |
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Preference number: 5 (lower is better) Translates to: SLSPSSVLNLGGFQRDSWSSGAG*WASPPC Trigger: ACAGGGAGGGCTTGCCCACAAGCCAGCACCTGAGGA...CCAGCTGTCTCGTTGGAAACCACCAAGGTTGAGAACAGATGAGGGCGACAGGGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS CCA 90 bp | CCTGATAAACCCTGCAGGTGTTCCAGCAGCACTTCATGGCACCCTTaGGCCCAGAGGTTTAGGTTGGGCTGCCGAGGATCGAAGAGTGGA | + |
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Preference number: 5 (lower is better) Translates to: PDKPCRCSSSTSWHP*AQRFRLGCRGSKSG Trigger: TCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS-3UTR CAA 90 bp | CTCAACCTTGGTGGTTTCCAACGAGACAGCTGGGTTCCAGGACACCTGGACTTCATAGGGGTCCGAGAGTaGGCTTTGCAGGCAAGGCCG | + |
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Preference number: 5 (lower is better) Translates to: LNLGGFQRDSWVPGHLDFIGVRE*ALQARP Trigger: CGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTAT...GAAGTCCAGGTGTCCTGGAACCCAGCTGTCTCGTTGGAAACCACCAAGGTTGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS-3UTR CAA 90 bp | TTGGTGGTTTCCAACGAGACAGCTGGGTTCCAGGACACCTGGACTTCTCATTCCGCCCAGAGGTTTAGGTaGGGCTGCCGAGGATCGAAG | + |
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Preference number: 5 (lower is better) Translates to: LVVSNETAGFQDTWTSHSAQRFR*GCRGSK Trigger: CTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGC...GGAATGAGAAGTCCAGGTGTCCTGGAACCCAGCTGTCTCGTTGGAAACCACCAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS TCA 90 bp | TCCGGTCAACTACATCTTGGTCACTGGGGTCCAAGTAACGGTTGCTaGCCCACTGAACACCAAACCAATCCTTGTAGCCATGGCGCCCGC | + |
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Preference number: 5 (lower is better) Translates to: SGQLHLGHWGPSNGC*PTEHQTNPCSHGAR Trigger: GCGGGCGCCATGGCTACAAGGATTGGTTTGGTGTTCAGTGGGTCAGCAACCGTTACTTGGACCCCAGTGACCAAGATGTAGTTGACCGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS CCA 90 bp | TTGGGAGGTTCTTCATCTGGTGGGGCCTCCTCAGGTGCTGGCTTGTaGGCAAGCCCTCCCTGTAGCCATGCAGTTTTCAGTATGTCTTTC | + |
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Preference number: 5 (lower is better) Translates to: LGGSSSGGASSGAGL*ASPPCSHAVFSMSF Trigger: GAAAGACATACTGAAAACTGCATGGCTACAGGGAGGGCTTGCCCACAAGCCAGCACCTGAGGAGGCCCCACCAGATGAAGAACCTCCCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS GCA 90 bp | AATAAGGTGACAGCCAGAATACTTCCCAGTGTGCCTGATAAACCCTaGAGGTGTTCCAGCAGCACTTCATGGCACCCTTGGGCCCAGAGG | + |
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Preference number: 5 (lower is better) Translates to: NKVTARILPSVPDKP*RCSSSTSWHPWAQR Trigger: CCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS-3UTR CAA 90 bp | TTTCCAACGAGACAGCTGGGTTCCAGGACACCTGGACTTCTCATTCCAGCCCAGTATAAGCCTTCCACATaGCTCTGGATCCGGTCAACT | + |
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Preference number: 5 (lower is better) Translates to: FPTRQLGSRTPGLLIPAQYKPST*LWIRST Trigger: AGTTGACCGGATCCAGAGCAATGTGGAAGGCTTATA...CTGGGCTGGAATGAGAAGTCCAGGTGTCCTGGAACCCAGCTGTCTCGTTGGAAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS GCA 90 bp | AACAGGAGAAGGGGACGCCATCAATCAGATATAAGCCTTCCACATTaGTCTGGATCCGGTCAACTACATCTTGGTCACTGGGGTCCAAGT | + |
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Preference number: 5 (lower is better) Translates to: NRRRGRHQSDISLPH*SGSGQLHLGHWGPS Trigger: ACTTGGACCCCAGTGACCAAGATGTAGTTGACCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS TCA 90 bp | GCAAATACCGCAAACCAAGGAGCACTAGAATCTGCAGCAATAAGGTaGCAGCCAGAATACTTCCCAGTGTGCCTGATAAACCCTGCAGGT | + |
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Preference number: 5 (lower is better) Translates to: ANTANQGALESAAIR*QPEYFPVCLINPAG Trigger: ACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAGATTCTAGTGCTCCTTGGTTTGCGGTATTTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS-3UTR CAA 90 bp | AAACTTTATTGTAGAATCTGGATGCTAGAAACATTCTCTAGTCCTTTGGTTGTCTCAGCTAGAACTTCCTaGGGAGGTTCTTCATCTGGT | + |
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Preference number: 5 (lower is better) Translates to: KLYCRIWMLETFSSPLVVSARTS*GGSSSG Trigger: ACCAGATGAAGAACCTCCCAAGGAAGTTCTAGCTGA...GACAACCAAAGGACTAGAGAATGTTTCTAGCATCCAGATTCTACAATAAAGTTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS CAA 72 bp | GAGGAGCCAGATGCCCTGTGCCAAACGGATACGGGGTaGGAGGGGCAGCACCACGGGCAGCACCGGCGCCAT | + |
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Preference number: 6 (lower is better) Translates to: EEPDALCQTDTG*EGQHHGQHRRH Trigger: ATGGCGCCGGTGCTGCCCGTGGTGCTGCCCCTCCAACCCCGTATCCGTTTGGCACAGGGCATCTGGCTCCTC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS GCA 72 bp | GTGCCCGCTACAAAGGAGGGTGAGGCCACCGACCAATaGCAGCAGCCAGGAGAGGAGCCAGATGCCCTGTGC | + |
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Preference number: 6 (lower is better) Translates to: VPATKEGEATDQ*QQPGEEPDALC Trigger: GCACAGGGCATCTGGCTCCTCTCCTGGCTGCTGGCATTGGTCGGTGGCCTCACCCTCCTTTGTAGCGGGCAC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS GCA 72 bp | CACCGACCAATGCCAGCAGCCAGGAGAGGAGCCAGATaGCCTGTGCCAAACGGATACGGGGTTGGAGGGGCA | + |
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Preference number: 6 (lower is better) Translates to: HRPMPAARRGAR*PVPNGYGVGGA Trigger: TGCCCCTCCAACCCCGTATCCGTTTGGCACAGGGCATCTGGCTCCTCTCCTGGCTGCTGGCATTGGTCGGTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS GCA 72 bp | GCAGAGCAGGGAATGAACAAGAGGGTGCCAGGAAGGTaGCAAGGTGCCCCAGCTGTACCAGAAGGTGCCCGC | + |
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Preference number: 6 (lower is better) Translates to: AEQGMNKRVPGR*QGAPAVPEGAR Trigger: GCGGGCACCTTCTGGTACAGCTGGGGCACCTTGGCACCTTCCTGGCACCCTCTTGTTCATTCCCTGCTCTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS CCA 72 bp | CCCTGCAGGTGTTCCAGCAGCACTTCATGGCACCCTTaGGCCCAGAGGTTTAGGTTGGGCTGCCGAGGATCG | + |
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Preference number: 6 (lower is better) Translates to: PCRCSSSTSWHP*AQRFRLGCRGS Trigger: CGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS GCA 72 bp | AGGAAGGTGCCAAGGTGCCCCAGCTGTACCAGAAGGTaGCCGCTACAAAGGAGGGTGAGGCCACCGACCAAT | + |
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Preference number: 6 (lower is better) Translates to: RKVPRCPSCTRR*PLQRRVRPPTN Trigger: ATTGGTCGGTGGCCTCACCCTCCTTTGTAGCGGGCACCTTCTGGTACAGCTGGGGCACCTTGGCACCTTCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS GCA 72 bp | GGGAATGAACAAGAGGGTGCCAGGAAGGTGCCAAGGTaGCCCAGCTGTACCAGAAGGTGCCCGCTACAAAGG | + |
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Preference number: 6 (lower is better) Translates to: GNEQEGARKVPR*PSCTRRCPLQR Trigger: CCTTTGTAGCGGGCACCTTCTGGTACAGCTGGGGCACCTTGGCACCTTCCTGGCACCCTCTTGTTCATTCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS CCA 72 bp | GCACTTCATGGCACCCTTGGGCCCAGAGGTTTAGGTTaGGCTGCCGAGGATCGAAGAGTGGATGGGCATAGG | + |
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Preference number: 6 (lower is better) Translates to: ALHGTLGPRGLG*AAEDRRVDGHR Trigger: CCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS CAA 72 bp | GGTTCTTCATCTGGTGGGGCCTCCTCAGGTGCTGGCTaGTGGGCAAGCCCTCCCTGTAGCCATGCAGTTTTC | + |
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Preference number: 6 (lower is better) Translates to: GSSSGGASSGAG*WASPPCSHAVF Trigger: GAAAACTGCATGGCTACAGGGAGGGCTTGCCCACAAGCCAGCACCTGAGGAGGCCCCACCAGATGAAGAACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS CCA 72 bp | CCTGATAAACCCTGCAGGTGTTCCAGCAGCACTTCATaGCACCCTTGGGCCCAGAGGTTTAGGTTGGGCTGC | + |
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Preference number: 6 (lower is better) Translates to: PDKPCRCSSSTS*HPWAQRFRLGC Trigger: GCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS CCA 72 bp | TCTTCATCTGGTGGGGCCTCCTCAGGTGCTGGCTTGTaGGCAAGCCCTCCCTGTAGCCATGCAGTTTTCAGT | + |
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Preference number: 6 (lower is better) Translates to: SSSGGASSGAGL*ASPPCSHAVFS Trigger: ACTGAAAACTGCATGGCTACAGGGAGGGCTTGCCCACAAGCCAGCACCTGAGGAGGCCCCACCAGATGAAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS CAA 90 bp | TCCTTGGGAGGTTCTTCATCTGGTGGGGCCTCCTCAGGTGCTGGCTaGTGGGCAAGCCCTCCCTGTAGCCATGCAGTTTTCAGTATGTCT | + |
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Preference number: 6 (lower is better) Translates to: SLGGSSSGGASSGAG*WASPPCSHAVFSMS Trigger: AGACATACTGAAAACTGCATGGCTACAGGGAGGGCTTGCCCACAAGCCAGCACCTGAGGAGGCCCCACCAGATGAAGAACCTCCCAAGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS GCA 72 bp | ACAGCCAGAATACTTCCCAGTGTGCCTGATAAACCCTaGAGGTGTTCCAGCAGCACTTCATGGCACCCTTGG | + |
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Preference number: 6 (lower is better) Translates to: TARILPSVPDKP*RCSSSTSWHPW Trigger: CCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS CAA 72 bp | GCCTTCCACATTGCTCTGGATCCGGTCAACTACATCTaGGTCACTGGGGTCCAAGTAACGGTTGCTGACCCA | + |
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Preference number: 6 (lower is better) Translates to: AFHIALDPVNYI*VTGVQVTVADP Trigger: TGGGTCAGCAACCGTTACTTGGACCCCAGTGACCAAGATGTAGTTGACCGGATCCAGAGCAATGTGGAAGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS CCA 72 bp | AATGGTACCTCAACTGCAACTCATCCATCAGACGTTTaGCCTGACAGCGTCCAGGCACCTCTGTGTCCTTGT | + |
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Preference number: 6 (lower is better) Translates to: NGTSTATHPSDV*PDSVQAPLCPC Trigger: ACAAGGACACAGAGGTGCCTGGACGCTGTCAGGCCAAACGTCTGATGGATGAGTTGCAGTTGAGGTACCATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS CAA 90 bp | CAACAGGAGAAGGGGACGCCATCAATCAGATATAAGCCTTCCACATaGCTCTGGATCCGGTCAACTACATCTTGGTCACTGGGGTCCAAG | + |
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Preference number: 6 (lower is better) Translates to: QQEKGTPSIRYKPST*LWIRSTTSWSLGSK Trigger: CTTGGACCCCAGTGACCAAGATGTAGTTGACCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS TCA 72 bp | CTACATCTTGGTCACTGGGGTCCAAGTAACGGTTGCTaGCCCACTGAACACCAAACCAATCCTTGTAGCCAT | + |
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Preference number: 6 (lower is better) Translates to: LHLGHWGPSNGC*PTEHQTNPCSH Trigger: ATGGCTACAAGGATTGGTTTGGTGTTCAGTGGGTCAGCAACCGTTACTTGGACCCCAGTGACCAAGATGTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS GCA 72 bp | AGGGGACGCCATCAATCAGATATAAGCCTTCCACATTaGTCTGGATCCGGTCAACTACATCTTGGTCACTGG | + |
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Preference number: 6 (lower is better) Translates to: RGRHQSDISLPH*SGSGQLHLGHW Trigger: CCAGTGACCAAGATGTAGTTGACCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS CAA 72 bp | AAGGGGACGCCATCAATCAGATATAAGCCTTCCACATaGCTCTGGATCCGGTCAACTACATCTTGGTCACTG | + |
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Preference number: 6 (lower is better) Translates to: KGTPSIRYKPST*LWIRSTTSWSL Trigger: CAGTGACCAAGATGTAGTTGACCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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| CDS GCA 72 bp | GTCTGCAAATACCGCAAACCAAGGAGCACTAGAATCTaGAGCAATAAGGTGACAGCCAGAATACTTCCCAGT | + |
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Preference number: 6 (lower is better) Translates to: VCKYRKPRSTRI*SNKVTARILPS Trigger: ACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAGATTCTAGTGCTCCTTGGTTTGCGGTATTTGCAGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096242.5 |
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