Pregenerated sensors for ROCK1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024290

Ensembl transcript IDs: ENSMUST00000067947.7, ENSMUST00000234610.2, ENSMUST00000234734.2

Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	TGCTTCTGTAACTGTGTCAGCTTCTCATTAGCAAGCTGTGAGGTCTaGCTTGCTTTCCGTAAGTCTTCTAACTGGTCCTTTAGTGTAGAA	+
Preference number: 5 (lower is better) Translates to: CFCNCVSFSLASCEV*LAFRKSSNWSFSVE Trigger: TTCTACACTAAAGGACCAGTTAGAAGACTTACGGAAAGCAAGTCAGACCTCACAGCTTGCTAATGAGAAGCTGACACAGTTACAGAAGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067947.7 ENSMUST00000234610.2
CDS TCA 90 bp	GCCCGCAACTGCTCAATATCACTCTCTTTGCTAGCCAACTGCATTTaGAGTTCATTTCTATGTGTACATTCTTCTACCAATTGCGCTTGC	+
Preference number: 5 (lower is better) Translates to: ARNCSISLSLLANCI*SSFLCVHSSTNCAC Trigger: GCAAGCGCAATTGGTAGAAGAATGTACACATAGAAATGAACTTCAAATGCAGTTGGCTAGCAAAGAGAGTGATATTGAGCAGTTGCGGGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067947.7 ENSMUST00000234610.2
CDS GCA 90 bp	TCCATTTCACACATGGCAACAGACTTTGCCTCTTCGATAGATTGGTaGTTGTCAGTTAGGCGTGCTTTGGTGACTTTATGTTCATTTACT	+
Preference number: 5 (lower is better) Translates to: SISHMATDFASSIDW*LSVRRALVTLCSFT Trigger: AGTAAATGAACATAAAGTCACCAAAGCACGCCTAACTGACAAGCACCAATCTATCGAAGAGGCAAAGTCTGTTGCCATGTGTGAAATGGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067947.7 ENSMUST00000234610.2
CDS CCA 90 bp	TTTTCCATTTCACACATGGCAACAGACTTTGCCTCTTCGATAGATTaGTGCTTGTCAGTTAGGCGTGCTTTGGTGACTTTATGTTCATTT	+
Preference number: 5 (lower is better) Translates to: FSISHMATDFASSID*CLSVRRALVTLCSF Trigger: AAATGAACATAAAGTCACCAAAGCACGCCTAACTGACAAGCACCAATCTATCGAAGAGGCAAAGTCTGTTGCCATGTGTGAAATGGAAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067947.7 ENSMUST00000234610.2
CDS TCA 90 bp	CCGACTAACAGTATGATCTTTATCTGTAATCTCTTGTCTATTTCTTaGAGCAGCTTTCTTGCTTTCCTGAGTCAACTCAAAATACTGTTC	+
Preference number: 5 (lower is better) Translates to: PTNSMIFICNLLSIS*SSFLAFLSQLKILF Trigger: GAACAGTATTTTGAGTTGACTCAGGAAAGCAAGAAAGCTGCTTCAAGAAATAGACAAGAGATTACAGATAAAGATCATACTGTTAGTCGG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067947.7 ENSMUST00000234610.2
CDS TCA 72 bp	ATAAACCAGGGCATCCAATCCATCCAGCAAACAATCTaGATTCACTTCCGATTTGGGATCCCGCAGCAGGTT	+
Preference number: 6 (lower is better) Translates to: INQGIQSIQQTI*IHFRFGIPQQV Trigger: AACCTGCTGCGGGATCCCAAATCGGAAGTGAATTCAGATTGTTTGCTGGATGGATTGGATGCCCTGGTTTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067947.7 ENSMUST00000234734.2
CDS GCA 72 bp	TCAAAATACTGTTCTTCCAGAATCCCTCGCGCCAGCTaGTCAGACTCAGCTTTTGTTTCTGCTAAATCCAAC	+
Preference number: 6 (lower is better) Translates to: SKYCSSRIPRAS*SDSAFVSAKSN Trigger: GTTGGATTTAGCAGAAACAAAAGCTGAGTCTGAGCAGCTGGCGCGAGGGATTCTGGAAGAACAGTATTTTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000067947.7 ENSMUST00000234610.2
CDS CCA 72 bp	TCACACATGGCAACAGACTTTGCCTCTTCGATAGATTaGTGCTTGTCAGTTAGGCGTGCTTTGGTGACTTTA	+
Preference number: 6 (lower is better) Translates to: SHMATDFASSID*CLSVRRALVTL Trigger: TAAAGTCACCAAAGCACGCCTAACTGACAAGCACCAATCTATCGAAGAGGCAAAGTCTGTTGCCATGTGTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067947.7 ENSMUST00000234610.2
CDS GCA 72 bp	TGTAACAAGAGCCGTTTATTTGATTCCTGTTCCAGCTaGAGGGCGAGATTCTTAACTTCATCCTCCATCCTT	+
Preference number: 6 (lower is better) Translates to: CNKSRLFDSCSS*RARFLTSSSIL Trigger: AAGGATGGAGGATGAAGTTAAGAATCTCGCCCTGCAGCTGGAACAGGAATCAAATAAACGGCTCTTGTTACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067947.7 ENSMUST00000234610.2
CDS GCA 72 bp	GTTGAATCCGAAAGGTCCAAAAGTTTTGCCCGCAACTaGTCAATATCACTCTCTTTGCTAGCCAACTGCATT	+
Preference number: 6 (lower is better) Translates to: VESERSKSFARN*SISLSLLANCI Trigger: AATGCAGTTGGCTAGCAAAGAGAGTGATATTGAGCAGTTGCGGGCAAAACTTTTGGACCTTTCGGATTCAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000067947.7 ENSMUST00000234610.2
CDS CAA 72 bp	ATGGCAACAGACTTTGCCTCTTCGATAGATTGGTGCTaGTCAGTTAGGCGTGCTTTGGTGACTTTATGTTCA	+
Preference number: 6 (lower is better) Translates to: MATDFASSIDWC*SVRRALVTLCS Trigger: TGAACATAAAGTCACCAAAGCACGCCTAACTGACAAGCACCAATCTATCGAAGAGGCAAAGTCTGTTGCCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067947.7 ENSMUST00000234610.2
CDS GCA 72 bp	TATGCCTCACCAATTGAACTTCTCCAAATGCACCTCTaGCGATTACCTTTACCACTTCATAATCTTCTGCTT	+
Preference number: 6 (lower is better) Translates to: YASPIELLQMHL*RLPLPLHNLLL Trigger: AAGCAGAAGATTATGAAGTGGTAAAGGTAATCGGCAGAGGTGCATTTGGAGAAGTTCAATTGGTGAGGCATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000067947.7 ENSMUST00000234610.2 ENSMUST00000234734.2
CDS GCA 72 bp	AGTGGATTTATGCCTCACCAATTGAACTTCTCCAAATaGACCTCTGCCGATTACCTTTACCACTTCATAATC	+
Preference number: 6 (lower is better) Translates to: SGFMPHQLNFSK*TSADYLYHFII Trigger: GATTATGAAGTGGTAAAGGTAATCGGCAGAGGTGCATTTGGAGAAGTTCAATTGGTGAGGCATAAATCCACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000067947.7 ENSMUST00000234610.2 ENSMUST00000234734.2
CDS CAA 90 bp	ATTTCACACATGGCAACAGACTTTGCCTCTTCGATAGATTGGTGCTaGTCAGTTAGGCGTGCTTTGGTGACTTTATGTTCATTTACTTCT	+
Preference number: 6 (lower is better) Translates to: ISHMATDFASSIDWC*SVRRALVTLCSFTS Trigger: AGAAGTAAATGAACATAAAGTCACCAAAGCACGCCTAACTGACAAGCACCAATCTATCGAAGAGGCAAAGTCTGTTGCCATGTGTGAAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067947.7 ENSMUST00000234610.2
CDS TCA 72 bp	TGCTCAGACTCAGCTTTTGTTTCTGCTAAATCCAACTaGGTAGAGAGAGTTTCTTTTTCACTTTGCAGTTCC	+
Preference number: 6 (lower is better) Translates to: CSDSAFVSAKSN*VERVSFSLCSS Trigger: GGAACTGCAAAGTGAAAAAGAAACTCTCTCTACTCAGTTGGATTTAGCAGAAACAAAAGCTGAGTCTGAGCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000067947.7 ENSMUST00000234610.2
CDS CAA 72 bp	GTTTTCTGTAAACTTTCCTGCAAGCTTTTATCCACATaGGAGCTAGATCTGTTCTCACTGGCATTTGCTGAA	+
Preference number: 6 (lower is better) Translates to: VFCKLSCKLLST*ELDLFSLAFAE Trigger: TTCAGCAAATGCCAGTGAGAACAGATCTAGCTCCAATGTGGATAAAAGCTTGCAGGAAAGTTTACAGAAAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000067947.7 ENSMUST00000234610.2
CDS TCA 72 bp	TGCTCAATATCACTCTCTTTGCTAGCCAACTGCATTTaGAGTTCATTTCTATGTGTACATTCTTCTACCAAT	+
Preference number: 6 (lower is better) Translates to: CSISLSLLANCI*SSFLCVHSSTN Trigger: ATTGGTAGAAGAATGTACACATAGAAATGAACTTCAAATGCAGTTGGCTAGCAAAGAGAGTGATATTGAGCA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067947.7 ENSMUST00000234610.2

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