RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ROBO1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022883

Ensembl transcript IDs: ENSMUST00000023600.8, ENSMUST00000231580.2, ENSMUST00000232205.2

Found 626 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CAATTTCATCTGGTATTGTGTGTCATCAGACGGGAGGAGGCCTCTTaGGTGATGGTTTTTCACATTAGCATCGTAAGCCTCTCTGGTTGT +
Preference number: 1 (lower is better)
Translates to: QFHLVLCVIRREEAS*VMVFHISIVSLSGC
Trigger: ACAACCAGAGAGGCTTACGATGCTAATGTGAAAAACCATCACTCAAGAGGCCTCCTCCCGTCTGATGACACACAATACCAGATGAAATTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
3UTR GCA 90 bp CATATCTCAGGGGCAAATCGCAAAAAGAATTGGTCTGTTCTTCCTTaGTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTT +
Preference number: 1 (lower is better)
Translates to: HISGANRKKNWSVLP*WLMAEASIQDTSSV
Trigger: AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAACAGACCAATTCTTTTTGCGATTTGCCCCTGAGATATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
3UTR TCA 90 bp AAATCGCAAAAAGAATTGGTCTGTTCTTCCTTGCTGGCTGATGGCTaGAGCAAGCATTCAAGACACTTCCAGTGTTGGAAGTCAAGGATA +
Preference number: 1 (lower is better)
Translates to: KSQKELVCSSLLADG*SKHSRHFQCWKSRI
Trigger: TATCCTTGACTTCCAACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAACAGACCAATTCTTTTTGCGATTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
3UTR CCA 90 bp AATAAAGAGGTTTCTTACATGAACATAATGAAAACATTAATCACGTaGATTGTTCCCTTAGAACTGCACATCCTTTCTATGGGACATGGG +
Preference number: 1 (lower is better)
Translates to: NKEVSYMNIMKTLIT*IVPLELHILSMGHG
Trigger: CCCATGTCCCATAGAAAGGATGTGCAGTTCTAAGGGAACAATCCACGTGATTAATGTTTTCATTATGTTCATGTAAGAAACCTCTTTATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
3UTR CCA 90 bp CAGAAGAAATTTAGGCCAGTTAAGATAGGGATGTCTTTACTCAATTaGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTT +
Preference number: 1 (lower is better)
Translates to: QKKFRPVKIGMSLLN*SLKTSICVEYAFVV
Trigger: AACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTGAGTAAAGACATCCCTATCTTAACTGGCCTAAATTTCTTCTG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
3UTR-3UTR TCA 90 bp AGAACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCGGGAGGAGGCCTCTTaGGTGATGGTTTTTCACATT +
Preference number: 2 (lower is better)
Translates to: RTRFLLGLLLTMTRQPEVREEAS*VMVFHI
Trigger: AATGTGAAAAACCATCACTCAAGAGGCCTCCTCCCG...GACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGTTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
3UTR-3UTR GCA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTCTTGTCCATTCTGATTaGACTGAACAATTTCATCTG +
Preference number: 2 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVLVHSD*TEQFHL
Trigger: CAGATGAAATTGTTCAGTGCAATCAGAATGGACAAG...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
3UTR-3UTR GCA 90 bp AGAACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCTGGTCTGTTCTTCCTTaGTGGCTGATGGCTGAAGCA +
Preference number: 2 (lower is better)
Translates to: RTRFLLGLLLTMTRQPEVWSVLP*WLMAEA
Trigger: TGCTTCAGCCATCAGCCAGCAAGGAAGAACAGACCA...GACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGTTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
3UTR-3UTR TCA 90 bp ACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCAAAGGAGGCCTCTTGAGTaGTGGTTTTTCACATTAGCA +
Preference number: 2 (lower is better)
Translates to: TRFLLGLLLTMTRQPEVQRRPLE*WFFTLA
Trigger: TGCTAATGTGAAAAACCATCACTCAAGAGGCCTCCT...TTGGACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
3UTR-3UTR TCA 90 bp TGTAGTTCTGTATGTGATAGACTTTTAGTTTATGCCAGCAAAGGGTGGTATAAACGGGAGGAGGCCTCTTaGGTGATGGTTTTTCACATT +
Preference number: 2 (lower is better)
Translates to: CSSVCDRLLVYASKGWYKREEAS*VMVFHI
Trigger: AATGTGAAAAACCATCACTCAAGAGGCCTCCTCCCG...TTTATACCACCCTTTGCTGGCATAAACTAAAAGTCTATCACATACAGAACTACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
3UTR-3UTR GCA 90 bp GGGGGAGGTTCATTAAGGGTTAGGCAATCAATCAGCAACACTAAAAACCCAAGACTTGTCCATTCTGATTaGACTGAACAATTTCATCTG +
Preference number: 2 (lower is better)
Translates to: GGGSLRVRQSISNTKNPRLVHSD*TEQFHL
Trigger: CAGATGAAATTGTTCAGTGCAATCAGAATGGACAAG...TCTTGGGTTTTTAGTGTTGCTGATTGATTGCCTAACCCTTAATGAACCTCCCCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
3UTR-3UTR GCA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTTGGTCTGTTCTTCCTTaGTGGCTGATGGCTGAAGCA +
Preference number: 2 (lower is better)
Translates to: QLVVKNIHLRGICICSCFWSVLP*WLMAEA
Trigger: TGCTTCAGCCATCAGCCAGCAAGGAAGAACAGACCA...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
3UTR-3UTR CCA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTTCTGTTCTTCCTTGCTaGCTGATGGCTGAAGCAAGC +
Preference number: 2 (lower is better)
Translates to: QLVVKNIHLRGICICSCFSVLPC*LMAEAS
Trigger: GCTTGCTTCAGCCATCAGCCAGCAAGGAAGAACAGA...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
3UTR-3UTR CCA 90 bp TATAGAAACCTACAGTCACAGAGCATCACTTGGCAATTCCGAGTTGGAATTCCTAAGTCCAGGAAAAATTaGAACCATTTGGTTCACAGC +
Preference number: 2 (lower is better)
Translates to: YRNLQSQSITWQFRVGIPKSRKN*NHLVHS
Trigger: GCTGTGAACCAAATGGTTCCAATTTTTCCTGGACTT...AGGAATTCCAACTCGGAATTGCCAAGTGATGCTCTGTGACTGTAGGTTTCTATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
3UTR-3UTR TCA 90 bp TATAGAAACCTACAGTCACAGAGCATCACTTGGCAATTCCGAGTTGGAATTCCTTGCTATCAATTAGCGTaGTATATAAGCAGTGCAATG +
Preference number: 2 (lower is better)
Translates to: YRNLQSQSITWQFRVGIPCYQLA*YISSAM
Trigger: CATTGCACTGCTTATATATCACGCTAATTGATAGCA...AGGAATTCCAACTCGGAATTGCCAAGTGATGCTCTGTGACTGTAGGTTTCTATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
3UTR-3UTR TCA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTAGGAGGCCTCTTGAGTaGTGGTTTTTCACATTAGCA +
Preference number: 2 (lower is better)
Translates to: QLVVKNIHLRGICICSCFRRPLE*WFFTLA
Trigger: TGCTAATGTGAAAAACCATCACTCAAGAGGCCTCCT...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
3UTR-3UTR CCA 90 bp ACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCAAAATCGCAAAAAGAATTaGTCTGTTCTTCCTTGCTGG +
Preference number: 2 (lower is better)
Translates to: TRFLLGLLLTMTRQPEVQNRKKN*SVLPCW
Trigger: CCAGCAAGGAAGAACAGACCAATTCTTTTTGCGATT...TTGGACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
3UTR-3UTR CCA 90 bp TGTAGTTCTGTATGTGATAGACTTTTAGTTTATGCCAGCAAAGGGTGGTATAAAAATCGCAAAAAGAATTaGTCTGTTCTTCCTTGCTGG +
Preference number: 2 (lower is better)
Translates to: CSSVCDRLLVYASKGWYKNRKKN*SVLPCW
Trigger: CCAGCAAGGAAGAACAGACCAATTCTTTTTGCGATT...TTTATACCACCCTTTGCTGGCATAAACTAAAAGTCTATCACATACAGAACTACA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
3UTR-3UTR GCA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAAAGTACCACCAGGAGTTaGAAAGAGTATATATTTACA +
Preference number: 2 (lower is better)
Translates to: KHRALTKQARNTSQQFLQSTTRS*KEYIFT
Trigger: TGTAAATATATACTCTTTGCAACTCCTGGTGGTACT...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
3UTR-3UTR CAA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTACGGGAGGAGGCCTCTaGAGTGATGGTTTTTCACAT +
Preference number: 3 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVTGGGL*SDGFSH
Trigger: ATGTGAAAAACCATCACTCAAGAGGCCTCCTCCCGT...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
3UTR TCA 72 bp CTGGTATTGTGTGTCATCAGACGGGAGGAGGCCTCTTaGGTGATGGTTTTTCACATTAGCATCGTAAGCCTC +
Preference number: 3 (lower is better)
Translates to: LVLCVIRREEAS*VMVFHISIVSL
Trigger: GAGGCTTACGATGCTAATGTGAAAAACCATCACTCAAGAGGCCTCCTCCCGTCTGATGACACACAATACCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
3UTR GCA 72 bp GGGGCAAATCGCAAAAAGAATTGGTCTGTTCTTCCTTaGTGGCTGATGGCTGAAGCAAGCATTCAAGACACT +
Preference number: 3 (lower is better)
Translates to: GANRKKNWSVLP*WLMAEASIQDT
Trigger: AGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAACAGACCAATTCTTTTTGCGATTTGCCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
3UTR TCA 72 bp AAAGAATTGGTCTGTTCTTCCTTGCTGGCTGATGGCTaGAGCAAGCATTCAAGACACTTCCAGTGTTGGAAG +
Preference number: 3 (lower is better)
Translates to: KELVCSSLLADG*SKHSRHFQCWK
Trigger: CTTCCAACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAACAGACCAATTCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
3UTR TCA 72 bp ATCGCAAAAAGAATTGGTCTGTTCTTCCTTGCTGGCTaGTGGCTGAAGCAAGCATTCAAGACACTTCCAGTG +
Preference number: 3 (lower is better)
Translates to: IAKRIGLFFLAG*WLKQAFKTLPV
Trigger: CACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAACAGACCAATTCTTTTTGCGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
3UTR CCA 72 bp GCAAATCGCAAAAAGAATTGGTCTGTTCTTCCTTGCTaGCTGATGGCTGAAGCAAGCATTCAAGACACTTCC +
Preference number: 3 (lower is better)
Translates to: ANRKKNWSVLPC*LMAEASIQDTS
Trigger: GGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAACAGACCAATTCTTTTTGCGATTTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
3UTR TCA 72 bp ACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTaGCCTCACCAGCTGTCACCATTCAAATATTGCAAA +
Preference number: 3 (lower is better)
Translates to: TIWFTAHDKVCT*PHQLSPFKYCK
Trigger: TTTGCAATATTTGAATGGTGACAGCTGGTGAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
3UTR-3UTR CAA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATACGGGAGGAGGCCTCTaGAGTGATGGTTTTTCACAT +
Preference number: 3 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDTGGGL*SDGFSH
Trigger: ATGTGAAAAACCATCACTCAAGAGGCCTCCTCCCGT...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
3UTR-3UTR CAA 90 bp TATAGAAACCTACAGTCACAGAGCATCACTTGGCAATTCCGAGTTGGAATTCCTCAATTTCATCTGGTATaGTGTGTCATCAGACGGGAG +
Preference number: 3 (lower is better)
Translates to: YRNLQSQSITWQFRVGIPQFHLV*CVIRRE
Trigger: CTCCCGTCTGATGACACACAATACCAGATGAAATTG...AGGAATTCCAACTCGGAATTGCCAAGTGATGCTCTGTGACTGTAGGTTTCTATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
3UTR-3UTR CAA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCAAATCGCAAAAAGAATaGGTCTGTTCTTCCTTGCTG +
Preference number: 3 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLKSQKE*VCSSLL
Trigger: CAGCAAGGAAGAACAGACCAATTCTTTTTGCGATTT...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
3UTR-3UTR CAA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCAATGCTTCTACCCCATaGAAATTAGACTGTAGTTCT +
Preference number: 3 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLNASTP*KLDCSS
Trigger: AGAACTACAGTCTAATTTCAATGGGGTAGAAGCATT...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
3UTR-3UTR CAA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAACAATTTCATCTGGTATaGTGTGTCATCAGACGGGAG +
Preference number: 3 (lower is better)
Translates to: KHRALTKQARNTSQQFLQQFHLV*CVIRRE
Trigger: CTCCCGTCTGATGACACACAATACCAGATGAAATTG...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
3UTR CCA 72 bp AAAAATTATAGAAACCTACAGTCACAGAGCATCACTTaGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTC +
Preference number: 3 (lower is better)
Translates to: KNYRNLQSQSIT*QFRVGIPLMSF
Trigger: GAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAAGTGATGCTCTGTGACTGTAGGTTTCTATAATTTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
3UTR-3UTR CAA 90 bp ACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCAAAATGCTTCTACCCCATaGAAATTAGACTGTAGTTCT +
Preference number: 3 (lower is better)
Translates to: TRFLLGLLLTMTRQPEVQNASTP*KLDCSS
Trigger: AGAACTACAGTCTAATTTCAATGGGGTAGAAGCATT...TTGGACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
3UTR-3UTR CAA 90 bp ACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCAAAAGTACCACCAGGAGTaGCAAAGAGTATATATTTAC +
Preference number: 3 (lower is better)
Translates to: TRFLLGLLLTMTRQPEVQKYHQE*QRVYIY
Trigger: GTAAATATATACTCTTTGCAACTCCTGGTGGTACTT...TTGGACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
3UTR CCA 72 bp TTTAGGCCAGTTAAGATAGGGATGTCTTTACTCAATTaGTCGTTAAAAACATCCATTTGCGTGGAATATGCA +
Preference number: 3 (lower is better)
Translates to: FRPVKIGMSLLN*SLKTSICVEYA
Trigger: TGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTGAGTAAAGACATCCCTATCTTAACTGGCCTAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
3UTR TCA 72 bp TTCTATGGGACATGGGGCTTCTTCAAATTAGCTAAATaGATACACTTAGTTTTAGGTGAATACCAGCCTTTT +
Preference number: 3 (lower is better)
Translates to: FYGTWGFFKLAK*IHLVLGEYQPF
Trigger: AAAAGGCTGGTATTCACCTAAAACTAAGTGTATTCATTTAGCTAATTTGAAGAAGCCCCATGTCCCATAGAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
3UTR CCA 72 bp GTTTCTTACATGAACATAATGAAAACATTAATCACGTaGATTGTTCCCTTAGAACTGCACATCCTTTCTATG +
Preference number: 3 (lower is better)
Translates to: VSYMNIMKTLIT*IVPLELHILSM
Trigger: CATAGAAAGGATGTGCAGTTCTAAGGGAACAATCCACGTGATTAATGTTTTCATTATGTTCATGTAAGAAAC
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTCTGCCGCCTCCTGTCTaGTGGGTGGGGCATGTGCCC +
Preference number: 4 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVLPPPV*WVGHVP
Trigger: GGGCACATGCCCCACCCACCAGACAGGAGGCGGCAG...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTGTGGGCCTTGGGCACTaGGAGGCATGGAAGTGGCGG +
Preference number: 4 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVVGLGH*EAWKWR
Trigger: CCGCCACTTCCATGCCTCTCAGTGCCCAAGGCCCAC...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTGTTGGGCCACGTGTCTaGCAGCCATGGCTGCGTGGC +
Preference number: 4 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVVGPRV*QPWLRG
Trigger: GCCACGCAGCCATGGCTGGCAGACACGTGGCCCAAC...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTCGCCCCAGTGCTCGCTaGCACCTCCACACTGTATCG +
Preference number: 4 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVRPSAR*HLHTVS
Trigger: CGATACAGTGTGGAGGTGGCAGCGAGCACTGGGGCG...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTGTCCCCAACACTGGATaGTGGGGTCTGCTCCAGCCC +
Preference number: 4 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVVPNTG*WGLLQP
Trigger: GGGCTGGAGCAGACCCCAGCATCCAGTGTTGGGGAC...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTAATTGGCCGTGGCGGTaGAGGAGGACTCACGGGCTG +
Preference number: 4 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVNWPWR*RRTHGL
Trigger: CAGCCCGTGAGTCCTCCTCCACCGCCACGGCCAATT...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTGCTTTGAGGGGGCGCTaGGGATTAAGTTGGGGTCGG +
Preference number: 4 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVALRGR*GLSWGR
Trigger: CCGACCCCAACTTAATCCCCAGCGCCCCCTCAAAGC...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTCACTCCGATTCACCATaGCTGGCTCCAGATGGGCGG +
Preference number: 4 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVHSDSP*LAPDGR
Trigger: CCGCCCATCTGGAGCCAGCCATGGTGAATCGGAGTG...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTCCCGGACAGGGGGAGTaGGGCCTCTTTCATCTTCCT +
Preference number: 4 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVPGQGE*GLFHLP
Trigger: AGGAAGATGAAAGAGGCCCCACTCCCCCTGTCCGGG...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTGGCTGGAGCTCTTCCTaGGGAGAAGGGGTGAGAGTG +
Preference number: 4 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVGWSSS*GEGVRV
Trigger: CACTCTCACCCCTTCTCCCCAGGAAGAGCTCCAGCC...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp GGGGGAGGTTCATTAAGGGTTAGGCAATCAATCAGCAACACTAAAAACCCAAGACCTGGGGAGAAGGGGTaGGAGTGGCCGTGGATTGGT +
Preference number: 4 (lower is better)
Translates to: GGGSLRVRQSISNTKNPRPGEKG*EWPWIG
Trigger: ACCAATCCACGGCCACTCTCACCCCTTCTCCCCAGG...TCTTGGGTTTTTAGTGTTGCTGATTGATTGCCTAACCCTTAATGAACCTCCCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp GGGGGAGGTTCATTAAGGGTTAGGCAATCAATCAGCAACACTAAAAACCCAAGACGCCCCAGTGCTCGCTaGCACCTCCACACTGTATCG +
Preference number: 4 (lower is better)
Translates to: GGGSLRVRQSISNTKNPRRPSAR*HLHTVS
Trigger: CGATACAGTGTGGAGGTGGCAGCGAGCACTGGGGCG...TCTTGGGTTTTTAGTGTTGCTGATTGATTGCCTAACCCTTAATGAACCTCCCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCAGCTGGAGAAGAAGCTaGCCCCCGGACAGGGGGAGT +
Preference number: 4 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLSWRRS*PPDRGS
Trigger: ACTCCCCCTGTCCGGGGGGCAGCTTCTTCTCCAGCT...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTGCCGAGGTGCGTCTTTaGTGGTGGAAGGTCTCGCTT +
Preference number: 4 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVAEVRL*WWKVSL
Trigger: AAGCGAGACCTTCCACCAGCAAAGACGCACCTCGGC...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTTTTTCCAGGAGATGGTaGGCTCTGGATGGCCCCGTG +
Preference number: 4 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVFSRRW*ALDGPV
Trigger: CACGGGGCCATCCAGAGCCCACCATCTCCTGGAAAA...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
52% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTTCCAGTGCTTCTCGCTaGAGTCCCCGGCGCCATTAT +
Preference number: 4 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVSSASR*SPRRHY
Trigger: ATAATGGCGCCGGGGACTCCAGCGAGAAGCACTGGA...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTGCCGTAAGTATGAGGTaGGGAAATTGGCCGTGGCGG +
Preference number: 4 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVAVSMR*GNWPWR
Trigger: CCGCCACGGCCAATTTCCCCACCTCATACTTACGGC...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTTGGCACTGGAGGGGGTaGAAGATCATCTGCGTAGGC +
Preference number: 4 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVWHWRG*KIICVG
Trigger: GCCTACGCAGATGATCTTCCACCCCCTCCAGTGCCA...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp TATAGAAACCTACAGTCACAGAGCATCACTTGGCAATTCCGAGTTGGAATTCCTGCCTCCCTCCACTGCTaGCGGCTTCGCCTCCTCTTT +
Preference number: 4 (lower is better)
Translates to: YRNLQSQSITWQFRVGIPASLHC*RLRLLF
Trigger: AAAGAGGAGGCGAAGCCGTCAGCAGTGGAGGGAGGC...AGGAATTCCAACTCGGAATTGCCAAGTGATGCTCTGTGACTGTAGGTTTCTATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTTTTTCTGCCGCCGTCTaGCAGCTGCTACCAGATGCA +
Preference number: 4 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVFSAAV*QLLPDA
Trigger: TGCATCTGGTAGCAGCTGGCAGACGGCGGCAGAAAA...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
51% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTTCTGCCAGCCATGGCTaGGTGGCAGGTTCACTAATG +
Preference number: 4 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVSASHG*VAGSLM
Trigger: CATTAGTGAACCTGCCACGCAGCCATGGCTGGCAGA...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp GGGGGAGGTTCATTAAGGGTTAGGCAATCAATCAGCAACACTAAAAACCCAAGACTGCGTAGGCTTCCCTaGGCAGATGTCCTGGCTGGT +
Preference number: 4 (lower is better)
Translates to: GGGSLRVRQSISNTKNPRLRRLP*ADVLAG
Trigger: ACCAGCCAGGACATCTGCGCAGGGAAGCCTACGCAG...TCTTGGGTTTTTAGTGTTGCTGATTGATTGCCTAACCCTTAATGAACCTCCCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GGGGGAGGTTCATTAAGGGTTAGGCAATCAATCAGCAACACTAAAAACCCAAGATCCAGCGATGCGTTGTaGCTCACAGCCTCTCCGAGG +
Preference number: 4 (lower is better)
Translates to: GGGSLRVRQSISNTKNPRSSDAL*LTASPR
Trigger: CCTCGGAGAGGCTGTGAGCCACAACGCATCGCTGGA...TCTTGGGTTTTTAGTGTTGCTGATTGATTGCCTAACCCTTAATGAACCTCCCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTCAGAATTGTGGGTGCTaGACTGCCTGTGGCCACACA +
Preference number: 4 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVQNCGC*TACGHT
Trigger: TGTGTGGCCACAGGCAGTCCAGCACCCACAATTCTG...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GGGGGAGGTTCATTAAGGGTTAGGCAATCAATCAGCAACACTAAAAACCCAAGAGGTTGTTGCCTGTGTTaGGCCACGTGTCTGCCAGCC +
Preference number: 4 (lower is better)
Translates to: GGGSLRVRQSISNTKNPRGCCLC*ATCLPA
Trigger: GGCTGGCAGACACGTGGCCCAACACAGGCAACAACC...TCTTGGGTTTTTAGTGTTGCTGATTGATTGCCTAACCCTTAATGAACCTCCCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCCCCGGACAGGGGGAGTaGGGCCTCTTTCATCTTCCT +
Preference number: 4 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLPGQGE*GLFHLP
Trigger: AGGAAGATGAAAGAGGCCCCACTCCCCCTGTCCGGG...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GGGGGAGGTTCATTAAGGGTTAGGCAATCAATCAGCAACACTAAAAACCCAAGAATGAGGTGGGGAAATTaGCCGTGGCGGTGGAGGAGG +
Preference number: 4 (lower is better)
Translates to: GGGSLRVRQSISNTKNPRMRWGN*PWRWRR
Trigger: CCTCCTCCACCGCCACGGCCAATTTCCCCACCTCAT...TCTTGGGTTTTTAGTGTTGCTGATTGATTGCCTAACCCTTAATGAACCTCCCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTTCATGTTGCTGTCTGTaGACACAGGACTCGTGGGCC +
Preference number: 4 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVSCCCL*TQDSWA
Trigger: GGCCCACGAGTCCTGTGTCCACAGACAGCAACATGA...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTGGAGACGATCAGGTCTaGAGGGTGTTCAACAATGCG +
Preference number: 4 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVGDDQV*RVFNNA
Trigger: CGCATTGTTGAACACCCTTCAGACCTGATCGTCTCC...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCGAGGCTGGCATTCCATaGCTGCAGGTTCGCCTACTG +
Preference number: 4 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLEAGIP*LQVRLL
Trigger: CAGTAGGCGAACCTGCAGTCATGGAATGCCAGCCTC...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp AGAACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCAGGACCTTGCCGAATaGCTGGGGGAGGCCGGTCTG +
Preference number: 4 (lower is better)
Translates to: RTRFLLGLLLTMTRQPEVQDLAE*LGEAGL
Trigger: CAGACCGGCCTCCCCCAGTCATTCGGCAAGGTCCTG...GACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGTTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCACGTCGGAGATCTGCTaGGCAAGGCTGACTTGGTCC +
Preference number: 4 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLTSEIC*ARLTWS
Trigger: GGACCAAGTCAGCCTTGCTCAGCAGATCTCCGACGT...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCCGGCCGTGCAGCAGTTaGTGGAGCAGTCATTGTGGT +
Preference number: 4 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLRPCSS*WSSHCG
Trigger: ACCACAATGACTGCTCCATCAACTGCTGCACGGCCG...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp GGGGGAGGTTCATTAAGGGTTAGGCAATCAATCAGCAACACTAAAAACCCAAGACCACAGAATTGTGGGTaGTGGACTGCCTGTGGCCAC +
Preference number: 4 (lower is better)
Translates to: GGGSLRVRQSISNTKNPRPQNCG*WTACGH
Trigger: GTGGCCACAGGCAGTCCAGCACCCACAATTCTGTGG...TCTTGGGTTTTTAGTGTTGCTGATTGATTGCCTAACCCTTAATGAACCTCCCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATACCGCTGGGGGTCGATaGGGTGCAGGTGTACCGACC +
Preference number: 4 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDTAGGR*GAGVPT
Trigger: GGTCGGTACACCTGCACCGCATCGACCCCCAGCGGT...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp ACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCAAACCGCTGGGGGTCGATaGGGTGCAGGTGTACCGACC +
Preference number: 4 (lower is better)
Translates to: TRFLLGLLLTMTRQPEVQTAGGR*GAGVPT
Trigger: GGTCGGTACACCTGCACCGCATCGACCCCCAGCGGT...TTGGACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCCGCATACTCCGCAGCTaGAGCAACTGCCTGGGCAAA +
Preference number: 4 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLRILRS*SNCLGK
Trigger: TTTGCCCAGGCAGTTGCTGCAGCTGCGGAGTATGCG...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTATTTGGCTGTTCCTGTaGCTCTCTGGGGTCACTTGG +
Preference number: 4 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVIWLFL*LSGVTW
Trigger: CCAAGTGACCCCAGAGAGGCACAGGAACAGCCAAAT...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCTTTTCCAGGAGATGGTaGGCTCTGGATGGCCCCGTG +
Preference number: 4 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLFSRRW*ALDGPV
Trigger: CACGGGGCCATCCAGAGCCCACCATCTCCTGGAAAA...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTTTAAGTTGGGGTCGGTaGGTCTTGGGGGTTGAACTG +
Preference number: 4 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVLSWGR*VLGVEL
Trigger: CAGTTCAACCCCCAAGACCCACCGACCCCAACTTAA...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCTCCAGTGCTTCTCGCTaGAGTCCCCGGCGCCATTAT +
Preference number: 4 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLSSASR*SPRRHY
Trigger: ATAATGGCGCCGGGGACTCCAGCGAGAAGCACTGGA...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCTTCACTGTTGCTATGTaGGGGAGGATGCGCCGGAGG +
Preference number: 4 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLFTVAM*GRMRRR
Trigger: CCTCCGGCGCATCCTCCCCCACATAGCAACAGTGAA...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GGGGGAGGTTCATTAAGGGTTAGGCAATCAATCAGCAACACTAAAAACCCAAGACCGCGCAGGTGGCACTaGACAGGGCATTTCTTGATC +
Preference number: 4 (lower is better)
Translates to: GGGSLRVRQSISNTKNPRPRRWH*TGHFLI
Trigger: GATCAAGAAATGCCCTGTCCAGTGCCACCTGCGCGG...TCTTGGGTTTTTAGTGTTGCTGATTGATTGCCTAACCCTTAATGAACCTCCCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TATAGAAACCTACAGTCACAGAGCATCACTTGGCAATTCCGAGTTGGAATTCCTTGGGGAAATTGGCCGTaGCGGTGGAGGAGGACTCAC +
Preference number: 4 (lower is better)
Translates to: YRNLQSQSITWQFRVGIPWGNWP*RWRRTH
Trigger: GTGAGTCCTCCTCCACCGCCACGGCCAATTTCCCCA...AGGAATTCCAACTCGGAATTGCCAAGTGATGCTCTGTGACTGTAGGTTTCTATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTGTCCTCCTCCTCTTCTaGGGCATCGGTATCCATATC +
Preference number: 4 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVVLLLF*GIGIHI
Trigger: GATATGGATACCGATGCCCCAGAAGAGGAGGAGGAC...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTGCGGGTCTGGCTTTCTaGATCACAACAGCACTCATG +
Preference number: 4 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVAGLAF*ITTALM
Trigger: CATGAGTGCTGTTGTGATCCAGAAAGCCAGACCCGC...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCGTGGAAGGTCTCGCTTaGCTGCCTTTGTTCCTCGGC +
Preference number: 4 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLVEGLA*LPLFLG
Trigger: GCCGAGGAACAAAGGCAGCCAAGCGAGACCTTCCAC...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCGTGCGTCTTTGCTGGTaGAAGGTCTCGCTTGGCTGC +
Preference number: 4 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLVRLCW*KVSLGC
Trigger: GCAGCCAAGCGAGACCTTCCACCAGCAAAGACGCAC...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCGCTGCCCTGATGGATTaGCAAAACGCCCGTCCTTCA +
Preference number: 4 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLAALMD*QNARPS
Trigger: TGAAGGACGGGCGTTTTGTCAATCCATCAGGGCAGC...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp ACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCAACCTGGGGAGAAGGGGTaGGAGTGGCCGTGGATTGGT +
Preference number: 4 (lower is better)
Translates to: TRFLLGLLLTMTRQPEVQPGEKG*EWPWIG
Trigger: ACCAATCCACGGCCACTCTCACCCCTTCTCCCCAGG...TTGGACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTCCAGCTGCTACCAGATaGATGGCTGAAGGCTTCTAT +
Preference number: 4 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVPAATR*MAEGFY
Trigger: ATAGAAGCCTTCAGCCATGCATCTGGTAGCAGCTGG...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGGTTGGGCCACGTGTCTaGCAGCCATGGCTGCGTGGC +
Preference number: 4 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKVGPRV*QPWLRG
Trigger: GCCACGCAGCCATGGCTGGCAGACACGTGGCCCAAC...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTAGTCATTGTGGTTGTTaGCTGTGTTGGGCCACGTGT +
Preference number: 4 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVSHCGC*LCWATC
Trigger: ACACGTGGCCCAACACAGGCAACAACCACAATGACT...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp ACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCAAGGTTGCTGTCGCTGTTaGCATTGCCGGCCGTGCAGC +
Preference number: 4 (lower is better)
Translates to: TRFLLGLLLTMTRQPEVQGCCRC*HCRPCS
Trigger: GCTGCACGGCCGGCAATGGCAACAGCGACAGCAACC...TTGGACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTTCCCGGATGTACTACTaGCCCGATCTGAGCTGTTAT +
Preference number: 4 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVSRMYY*PDLSCY
Trigger: ATAACAGCTCAGATCGGGGCAGTAGTACATCCGGGA...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCTGCCTTTGGTGTCCGTaGCCCTTTCTTGTGGCCTTG +
Preference number: 4 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLCLWCP*PFLVAL
Trigger: CAAGGCCACAAGAAAGGGGCACGGACACCAAAGGCA...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp GGGGGAGGTTCATTAAGGGTTAGGCAATCAATCAGCAACACTAAAAACCCAAGACAGTTCATGCCACCCTaGTTGGGTGCCTTTGGTGTC +
Preference number: 4 (lower is better)
Translates to: GGGSLRVRQSISNTKNPRQFMPP*LGAFGV
Trigger: GACACCAAAGGCACCCAAGCAGGGTGGCATGAACTG...TCTTGGGTTTTTAGTGTTGCTGATTGATTGCCTAACCCTTAATGAACCTCCCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAACTATGTGGGGGAGGATaGGCCGGAGGAGGGGGCAGC +
Preference number: 4 (lower is better)
Translates to: KHRALTKQARNTSQQFLQLCGGG*AGGGGS
Trigger: GCTGCCCCCTCCTCCGGCGCATCCTCCCCCACATAG...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTCTATGTGGGGGAGGATaGGCCGGAGGAGGGGGCAGC +
Preference number: 4 (lower is better)
Translates to: QLVVKNIHLRGICICSCFLCGGG*AGGGGS
Trigger: GCTGCCCCCTCCTCCGGCGCATCCTCCCCCACATAG...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp TATAGAAACCTACAGTCACAGAGCATCACTTGGCAATTCCGAGTTGGAATTCCTCTGGATGCTGGGGTCTaGTCCAGCCCACGTAACAAC +
Preference number: 4 (lower is better)
Translates to: YRNLQSQSITWQFRVGIPLDAGV*SSPRNN
Trigger: GTTGTTACGTGGGCTGGAGCAGACCCCAGCATCCAG...AGGAATTCCAACTCGGAATTGCCAAGTGATGCTCTGTGACTGTAGGTTTCTATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp TATAGAAACCTACAGTCACAGAGCATCACTTGGCAATTCCGAGTTGGAATTCCTCGCATACTCCGCAGCTaGAGCAACTGCCTGGGCAAA +
Preference number: 4 (lower is better)
Translates to: YRNLQSQSITWQFRVGIPRILRS*SNCLGK
Trigger: TTTGCCCAGGCAGTTGCTGCAGCTGCGGAGTATGCG...AGGAATTCCAACTCGGAATTGCCAAGTGATGCTCTGTGACTGTAGGTTTCTATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCTTGTGGTCCACCCCTTaGCTGGTTGGTGGGACATCT +
Preference number: 4 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLLWSTP*LVGGTS
Trigger: AGATGTCCCACCAACCAGCCAAGGGGTGGACCACAA...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TATAGAAACCTACAGTCACAGAGCATCACTTGGCAATTCCGAGTTGGAATTCCTCCGATTCACCATGGCTaGCTCCAGATGGGCGGTAGA +
Preference number: 4 (lower is better)
Translates to: YRNLQSQSITWQFRVGIPPIHHG*LQMGGR
Trigger: TCTACCGCCCATCTGGAGCCAGCCATGGTGAATCGG...AGGAATTCCAACTCGGAATTGCCAAGTGATGCTCTGTGACTGTAGGTTTCTATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTCTGCCGCCTCCTGTCTaGTGGGTGGGGCATGTGCCC +
Preference number: 4 (lower is better)
Translates to: QLVVKNIHLRGICICSCFLPPPV*WVGHVP
Trigger: GGGCACATGCCCCACCCACCAGACAGGAGGCGGCAG...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATAATTGGCCGTGGCGGTaGAGGAGGACTCACGGGCTG +
Preference number: 4 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDNWPWR*RRTHGL
Trigger: CAGCCCGTGAGTCCTCCTCCACCGCCACGGCCAATT...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp AGAACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCCCAACACTGGATGCTaGGGTCTGCTCCAGCCCACG +
Preference number: 4 (lower is better)
Translates to: RTRFLLGLLLTMTRQPEVPNTGC*GLLQPT
Trigger: CGTGGGCTGGAGCAGACCCCAGCATCCAGTGTTGGG...GACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATCCCAACACTGGATGCTaGGGTCTGCTCCAGCCCACG +
Preference number: 4 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDPNTGC*GLLQPT
Trigger: CGTGGGCTGGAGCAGACCCCAGCATCCAGTGTTGGG...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCCGATTTTATAGCAGGTaGTGGCACTGGAGGGGGTGG +
Preference number: 4 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLRFYSR*WHWRGW
Trigger: CCACCCCCTCCAGTGCCACCACCTGCTATAAAATCG...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATCAGCAGCATCCGGTGTaGGCGCGGGTCATCTTTGTC +
Preference number: 4 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDQQHPV*ARVIFV
Trigger: GACAAAGATGACCCGCGCTCACACCGGATGCTGCTG...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCCCAGTTGCTTCGCACTaGAACGTCACAGTTCTTCCC +
Preference number: 4 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLPVASH*NVTVLP
Trigger: GGGAAGAACTGTGACGTTTCAGTGCGAAGCAACTGG...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp TGTAGTTCTGTATGTGATAGACTTTTAGTTTATGCCAGCAAAGGGTGGTATAAACAGGACCTTGCCGAATaGCTGGGGGAGGCCGGTCTG +
Preference number: 4 (lower is better)
Translates to: CSSVCDRLLVYASKGWYKQDLAE*LGEAGL
Trigger: CAGACCGGCCTCCCCCAGTCATTCGGCAAGGTCCTG...TTTATACCACCCTTTGCTGGCATAAACTAAAAGTCTATCACATACAGAACTACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp GGGGGAGGTTCATTAAGGGTTAGGCAATCAATCAGCAACACTAAAAACCCAAGACTGTGGCCACACAGCTaGGGATTAAAGTGCCATCCA +
Preference number: 4 (lower is better)
Translates to: GGGSLRVRQSISNTKNPRLWPHS*GLKCHP
Trigger: TGGATGGCACTTTAATCCTCAGCTGTGTGGCCACAG...TCTTGGGTTTTTAGTGTTGCTGATTGATTGCCTAACCCTTAATGAACCTCCCCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp TATAGAAACCTACAGTCACAGAGCATCACTTGGCAATTCCGAGTTGGAATTCCTCCGCATACGTGCTGGTaGGTCCGTTTCTCTTCTTGC +
Preference number: 4 (lower is better)
Translates to: YRNLQSQSITWQFRVGIPPHTCW*VRFSSC
Trigger: GCAAGAAGAGAAACGGACTCACCAGCACGTATGCGG...AGGAATTCCAACTCGGAATTGCCAAGTGATGCTCTGTGACTGTAGGTTTCTATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGGCCTCCCTCCACTGCTaGCGGCTTCGCCTCCTCTTT +
Preference number: 4 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKASLHC*RLRLLF
Trigger: AAAGAGGAGGCGAAGCCGTCAGCAGTGGAGGGAGGC...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp ACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCAAGGGAGTGGGCTGCCCTaGTGGATTGACAAAACGCCC +
Preference number: 4 (lower is better)
Translates to: TRFLLGLLLTMTRQPEVQGSGLP*WIDKTP
Trigger: GGGCGTTTTGTCAATCCATCAGGGCAGCCCACTCCC...TTGGACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCACTACTGCCCCGATCTaGGCTGTTATAAGACCCTCC +
Preference number: 4 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLTTAPI*AVIRPS
Trigger: GGAGGGTCTTATAACAGCTCAGATCGGGGCAGTAGT...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAAGTGGGCCTTGGGCACTaGGAGGCATGGAAGTGGCGG +
Preference number: 4 (lower is better)
Translates to: KHRALTKQARNTSQQFLQVGLGH*EAWKWR
Trigger: CCGCCACTTCCATGCCTCTCAGTGCCCAAGGCCCAC...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGTGGGGGTCGATGCGGTaGAGGTGTACCGACCCGTGT +
Preference number: 4 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKWGSMR*RCTDPC
Trigger: ACACGGGTCGGTACACCTGCACCGCATCGACCCCCA...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCAGTTCTCTTTGGACCTaGTTGTGGTCCACCCCTTGG +
Preference number: 4 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLSSLWT*LWSTPW
Trigger: CCAAGGGGTGGACCACAAGCAGGTCCAAAGAGAACT...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp TATAGAAACCTACAGTCACAGAGCATCACTTGGCAATTCCGAGTTGGAATTCCTCAGTTCATGCCACCCTaGTTGGGTGCCTTTGGTGTC +
Preference number: 4 (lower is better)
Translates to: YRNLQSQSITWQFRVGIPQFMPP*LGAFGV
Trigger: GACACCAAAGGCACCCAAGCAGGGTGGCATGAACTG...AGGAATTCCAACTCGGAATTGCCAAGTGATGCTCTGTGACTGTAGGTTTCTATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp AGAACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCTGCGTAGGCTTCCCTaGGCAGATGTCCTGGCTGGT +
Preference number: 4 (lower is better)
Translates to: RTRFLLGLLLTMTRQPEVLRRLP*ADVLAG
Trigger: ACCAGCCAGGACATCTGCGCAGGGAAGCCTACGCAG...GACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGTTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp GGGGGAGGTTCATTAAGGGTTAGGCAATCAATCAGCAACACTAAAAACCCAAGAATTTGGCTGTTCCTGTaGCTCTCTGGGGTCACTTGG +
Preference number: 4 (lower is better)
Translates to: GGGSLRVRQSISNTKNPRIWLFL*LSGVTW
Trigger: CCAAGTGACCCCAGAGAGGCACAGGAACAGCCAAAT...TCTTGGGTTTTTAGTGTTGCTGATTGATTGCCTAACCCTTAATGAACCTCCCCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp AGAACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCTCCAGCGATGCGTTGTaGCTCACAGCCTCTCCGAGG +
Preference number: 4 (lower is better)
Translates to: RTRFLLGLLLTMTRQPEVSSDAL*LTASPR
Trigger: CCTCGGAGAGGCTGTGAGCCACAACGCATCGCTGGA...GACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGTTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCTCGGCTAGAGGACTGTaGAGGCTGGTAGGAGAAAAG +
Preference number: 4 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLSARGL*RLVGEK
Trigger: CTTTTCTCCTACCAGCCTCCACAGTCCTCTAGCCGA...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATCGCTGGGGATTAAGTTaGGGTCGGTGGGTCTTGGGG +
Preference number: 4 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDRWGLS*GRWVLG
Trigger: CCCCAAGACCCACCGACCCCAACTTAATCCCCAGCG...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TATAGAAACCTACAGTCACAGAGCATCACTTGGCAATTCCGAGTTGGAATTCCTCTTTGGACCTGCTTGTaGTCCACCCCTTGGCTGGTT +
Preference number: 4 (lower is better)
Translates to: YRNLQSQSITWQFRVGIPLWTCL*STPWLV
Trigger: AACCAGCCAAGGGGTGGACCACAAGCAGGTCCAAAG...AGGAATTCCAACTCGGAATTGCCAAGTGATGCTCTGTGACTGTAGGTTTCTATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCTTCCCCAGTTCTCTTTaGACCTGCTTGTGGTCCACC +
Preference number: 4 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLFPSSL*TCLWST
Trigger: GGTGGACCACAAGCAGGTCCAAAGAGAACTGGGGAA...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATCACTCCGATTCACCATaGCTGGCTCCAGATGGGCGG +
Preference number: 4 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDHSDSP*LAPDGR
Trigger: CCGCCCATCTGGAGCCAGCCATGGTGAATCGGAGTG...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATCGTGTCTGCCAGCCATaGCTGCGTGGCAGGTTCACT +
Preference number: 4 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDRVCQP*LRGRFT
Trigger: AGTGAACCTGCCACGCAGCCATGGCTGGCAGACACG...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp AGAACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCGGCTGGAGCTCTTCCTaGGGAGAAGGGGTGAGAGTG +
Preference number: 4 (lower is better)
Translates to: RTRFLLGLLLTMTRQPEVGWSSS*GEGVRV
Trigger: CACTCTCACCCCTTCTCCCCAGGAAGAGCTCCAGCC...GACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGTTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GGGGGAGGTTCATTAAGGGTTAGGCAATCAATCAGCAACACTAAAAACCCAAGATCCTGTAACATGGGCTaGAGCTCTTCCTGGGGAGAA +
Preference number: 4 (lower is better)
Translates to: GGGSLRVRQSISNTKNPRSCNMG*SSSWGE
Trigger: TTCTCCCCAGGAAGAGCTCCAGCCCATGTTACAGGA...TCTTGGGTTTTTAGTGTTGCTGATTGATTGCCTAACCCTTAATGAACCTCCCCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATTGGACACAGGACTCGTaGGCCTTGGGCACTGAGAGG +
Preference number: 4 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDWTQDS*ALGTER
Trigger: CCTCTCAGTGCCCAAGGCCCACGAGTCCTGTGTCCA...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TATAGAAACCTACAGTCACAGAGCATCACTTGGCAATTCCGAGTTGGAATTCCTCGATTTTATAGCAGGTaGTGGCACTGGAGGGGGTGG +
Preference number: 4 (lower is better)
Translates to: YRNLQSQSITWQFRVGIPRFYSR*WHWRGW
Trigger: CCACCCCCTCCAGTGCCACCACCTGCTATAAAATCG...AGGAATTCCAACTCGGAATTGCCAAGTGATGCTCTGTGACTGTAGGTTTCTATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp ACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCAAATCAGAGGTGGGGGCTaGCGTTCCGTTGTCGTTCCC +
Preference number: 4 (lower is better)
Translates to: TRFLLGLLLTMTRQPEVQIRGGG*RSVVVP
Trigger: GGGAACGACAACGGAACGCCAGCCCCCACCTCTGAT...TTGGACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp TATAGAAACCTACAGTCACAGAGCATCACTTGGCAATTCCGAGTTGGAATTCCTTCCACTGCTACAGTCTaGTTCACAGGACCTTGCCGA +
Preference number: 4 (lower is better)
Translates to: YRNLQSQSITWQFRVGIPSTATV*FTGPCR
Trigger: TCGGCAAGGTCCTGTGAATCAGACTGTAGCAGTGGA...AGGAATTCCAACTCGGAATTGCCAAGTGATGCTCTGTGACTGTAGGTTTCTATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp TATAGAAACCTACAGTCACAGAGCATCACTTGGCAATTCCGAGTTGGAATTCCTCTGTGGCCACACAGCTaGGGATTAAAGTGCCATCCA +
Preference number: 4 (lower is better)
Translates to: YRNLQSQSITWQFRVGIPLWPHS*GLKCHP
Trigger: TGGATGGCACTTTAATCCTCAGCTGTGTGGCCACAG...AGGAATTCCAACTCGGAATTGCCAAGTGATGCTCTGTGACTGTAGGTTTCTATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp AGAACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCACGTCGGAGATCTGCTaGGCAAGGCTGACTTGGTCC +
Preference number: 4 (lower is better)
Translates to: RTRFLLGLLLTMTRQPEVTSEIC*ARLTWS
Trigger: GGACCAAGTCAGCCTTGCTCAGCAGATCTCCGACGT...GACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATCGGCCGTGCAGCAGTTaGTGGAGCAGTCATTGTGGT +
Preference number: 4 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDRPCSS*WSSHCG
Trigger: ACCACAATGACTGCTCCATCAACTGCTGCACGGCCG...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGGGGAGTGGGCTGCCCTaGTGGATTGACAAAACGCCC +
Preference number: 4 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKGSGLP*WIDKTP
Trigger: GGGCGTTTTGTCAATCCATCAGGGCAGCCCACTCCC...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTTCCATGATGTTATACTaGATTGGTGCCACTTCCGGT +
Preference number: 4 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVSMMLY*IGATSG
Trigger: ACCGGAAGTGGCACCAATTCAGTATAACATCATGGA...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp AGAACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCGAGTTTTGGCACCATaGCAGGCCGTACCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: RTRFLLGLLLTMTRQPEVRVLAP*QAVPPA
Trigger: AGCTGGAGGTACGGCCTGTCATGGTGCCAAAACTCG...GACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp AGAACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCAGCTACCTCCAGCGATaGGTTGTGGCTCACAGCCTC +
Preference number: 4 (lower is better)
Translates to: RTRFLLGLLLTMTRQPEVSYLQR*VVAHSL
Trigger: GAGGCTGTGAGCCACAACGCATCGCTGGAGGTAGCT...GACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTGTCATCCACAGTCACTaGCAAATTACTGGGTCTCTT +
Preference number: 4 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVVIHSH*QITGSL
Trigger: AAGAGACCCAGTAATTTGGCAGTGACTGTGGATGAC...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTTTGAGGATTTCCAGTTaGTTCGCACTGAAACGTCAC +
Preference number: 4 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVLRISS*FALKRH
Trigger: GTGACGTTTCAGTGCGAAGCAACTGGAAATCCTCAA...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAATGGGGGTCGATGCGGTaGAGGTGTACCGACCCGTGT +
Preference number: 4 (lower is better)
Translates to: KHRALTKQARNTSQQFLQWGSMR*RCTDPC
Trigger: ACACGGGTCGGTACACCTGCACCGCATCGACCCCCA...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCTGTTTTCACATTTTCTaGCGCCGTCTGCCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLCFHIF*RRLPAA
Trigger: AGCAGCTGGCAGACGGCGGCAGAAAATGTGAAAACA...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTAGGATGGTCGGGTTGTaGAGATGTAAGACAACATTC +
Preference number: 4 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVRMVGL*RCKTTF
Trigger: GAATGTTGTCTTACATCTGCACAACCCGACCATCCT...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp TGTAGTTCTGTATGTGATAGACTTTTAGTTTATGCCAGCAAAGGGTGGTATAAAGGTTGCTGTCGCTGTTaGCATTGCCGGCCGTGCAGC +
Preference number: 4 (lower is better)
Translates to: CSSVCDRLLVYASKGWYKGCCRC*HCRPCS
Trigger: GCTGCACGGCCGGCAATGGCAACAGCGACAGCAACC...TTTATACCACCCTTTGCTGGCATAAACTAAAAGTCTATCACATACAGAACTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTAGCTGGAGAAGAAGCTaGCCCCCGGACAGGGGGAGT +
Preference number: 4 (lower is better)
Translates to: QLVVKNIHLRGICICSCFSWRRS*PPDRGS
Trigger: ACTCCCCCTGTCCGGGGGGCAGCTTCTTCTCCAGCT...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp ACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCAACTGGATGCTGGGGTCTaGTCCAGCCCACGTAACAAC +
Preference number: 4 (lower is better)
Translates to: TRFLLGLLLTMTRQPEVQLDAGV*SSPRNN
Trigger: GTTGTTACGTGGGCTGGAGCAGACCCCAGCATCCAG...TTGGACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCCAACAGCACTCATGTTaGTGTCTGTGGACACAGGAC +
Preference number: 4 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLQQHSC*CLWTQD
Trigger: GTCCTGTGTCCACAGACAGCAACATGAGTGCTGTTG...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp AGAACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCGCCGAGGTGCGTCTTTaGTGGTGGAAGGTCTCGCTT +
Preference number: 4 (lower is better)
Translates to: RTRFLLGLLLTMTRQPEVAEVRL*WWKVSL
Trigger: AAGCGAGACCTTCCACCAGCAAAGACGCACCTCGGC...GACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp AGAACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCTCCTCTTGGCCGAGGTaGGTCTTTGCTGGTGGAAGG +
Preference number: 4 (lower is better)
Translates to: RTRFLLGLLLTMTRQPEVSSWPR*VFAGGR
Trigger: CCTTCCACCAGCAAAGACGCACCTCGGCCAAGAGGA...GACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTTTCAACAATGCGGGGTaGAAAATCTTCCTGACGAAG +
Preference number: 4 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVFNNAG*KIFLTK
Trigger: CTTCGTCAGGAAGATTTTCCACCCCGCATTGTTGAA...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GGGGGAGGTTCATTAAGGGTTAGGCAATCAATCAGCAACACTAAAAACCCAAGATGGCAGGTTCTCCTTTaGAGACGATCAGGTCTGAAG +
Preference number: 4 (lower is better)
Translates to: GGGSLRVRQSISNTKNPRWQVLL*RRSGLK
Trigger: CTTCAGACCTGATCGTCTCCAAAGGAGAACCTGCCA...TCTTGGGTTTTTAGTGTTGCTGATTGATTGCCTAACCCTTAATGAACCTCCCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATATTCTATCGTCGGGGTaGGGCGGCCTTCGGCTTTAC +
Preference number: 4 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDILSSG*GGLRLY
Trigger: GTAAAGCCGAAGGCCGCCCCACCCCGACGATAGAAT...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGCTCTGGATGGCCCCGTaGAGGCTGGCATTCCATGAC +
Preference number: 4 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKLWMAP*RLAFHD
Trigger: GTCATGGAATGCCAGCCTCCACGGGGCCATCCAGAG...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp ACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCAACCTTTTTCCAGGAGATaGTGGGCTCTGGATGGCCCC +
Preference number: 4 (lower is better)
Translates to: TRFLLGLLLTMTRQPEVQPFSRR*WALDGP
Trigger: GGGGCCATCCAGAGCCCACCATCTCCTGGAAAAAGG...TTGGACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GGGGGAGGTTCATTAAGGGTTAGGCAATCAATCAGCAACACTAAAAACCCAAGAGTTCCCCCACCATGTTaGTGCCAACGCAAACATACT +
Preference number: 4 (lower is better)
Translates to: GGGSLRVRQSISNTKNPRVPPPC*CQRKHT
Trigger: AGTATGTTTGCGTTGGCACCAACATGGTGGGGGAAC...TCTTGGGTTTTTAGTGTTGCTGATTGATTGCCTAACCCTTAATGAACCTCCCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTGGGGTCGGTGGGTCTTaGGGGTTGAACTGGAACCCC +
Preference number: 4 (lower is better)
Translates to: QLVVKNIHLRGICICSCFGVGGS*GLNWNP
Trigger: GGGGTTCCAGTTCAACCCCCAAGACCCACCGACCCC...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TGTAGTTCTGTATGTGATAGACTTTTAGTTTATGCCAGCAAAGGGTGGTATAAAGGGGTCGGTGGGTCTTaGGGGTTGAACTGGAACCCC +
Preference number: 4 (lower is better)
Translates to: CSSVCDRLLVYASKGWYKGVGGS*GLNWNP
Trigger: GGGGTTCCAGTTCAACCCCCAAGACCCACCGACCCC...TTTATACCACCCTTTGCTGGCATAAACTAAAAGTCTATCACATACAGAACTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TATAGAAACCTACAGTCACAGAGCATCACTTGGCAATTCCGAGTTGGAATTCCTTTAAGTTGGGGTCGGTaGGTCTTGGGGGTTGAACTG +
Preference number: 4 (lower is better)
Translates to: YRNLQSQSITWQFRVGIPLSWGR*VLGVEL
Trigger: CAGTTCAACCCCCAAGACCCACCGACCCCAACTTAA...AGGAATTCCAACTCGGAATTGCCAAGTGATGCTCTGTGACTGTAGGTTTCTATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGGCTTTGAGGGGGCGCTaGGGATTAAGTTGGGGTCGG +
Preference number: 4 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKALRGR*GLSWGR
Trigger: CCGACCCCAACTTAATCCCCAGCGCCCCCTCAAAGC...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGGGTTGTTGCCTGTGTTaGGCCACGTGTCTGCCAGCC +
Preference number: 4 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKGCCLC*ATCLPA
Trigger: GGCTGGCAGACACGTGGCCCAACACAGGCAACAACC...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCATGGAGCAGTCATTGTaGTTGTTGCCTGTGTTGGGC +
Preference number: 4 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLMEQSL*LLPVLG
Trigger: GCCCAACACAGGCAACAACCACAATGACTGCTCCAT...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATCCGCGCAGGTGGCACTaGACAGGGCATTTCTTGATC +
Preference number: 4 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDPRRWH*TGHFLI
Trigger: GATCAAGAAATGCCCTGTCCAGTGCCACCTGCGCGG...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATCAAGGTCCCCAACACTaGATGCTGGGGTCTGCTCCA +
Preference number: 4 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDQGPQH*MLGSAP
Trigger: TGGAGCAGACCCCAGCATCCAGTGTTGGGGACCTTG...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp AGAACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCTGGCACTGGAGGGGGTaGAAGATCATCTGCGTAGGC +
Preference number: 4 (lower is better)
Translates to: RTRFLLGLLLTMTRQPEVWHWRG*KIICVG
Trigger: GCCTACGCAGATGATCTTCCACCCCCTCCAGTGCCA...GACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATAGCAGGTGGTGGCACTaGAGGGGGTGGAAGATCATC +
Preference number: 4 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDSRWWH*RGWKII
Trigger: GATGATCTTCCACCCCCTCCAGTGCCACCACCTGCT...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCCTCTCTGGGGTCACTTaGATTTGTTCGCAGGTCAGT +
Preference number: 4 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLLSGVT*ICSQVS
Trigger: ACTGACCTGCGAACAAATCCAAGTGACCCCAGAGAG...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GGGGGAGGTTCATTAAGGGTTAGGCAATCAATCAGCAACACTAAAAACCCAAGAGTTCCTGTGCCTCTCTaGGGTCACTTGGATTTGTTC +
Preference number: 4 (lower is better)
Translates to: GGGSLRVRQSISNTKNPRVPVPL*GHLDLF
Trigger: GAACAAATCCAAGTGACCCCAGAGAGGCACAGGAAC...TCTTGGGTTTTTAGTGTTGCTGATTGATTGCCTAACCCTTAATGAACCTCCCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp ACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCAAGTGCGTCTTTGCTGGTaGAAGGTCTCGCTTGGCTGC +
Preference number: 4 (lower is better)
Translates to: TRFLLGLLLTMTRQPEVQVRLCW*KVSLGC
Trigger: GCAGCCAAGCGAGACCTTCCACCAGCAAAGACGCAC...TTGGACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp ACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCAAGAGGTGCGTCTTTGCTaGTGGAAGGTCTCGCTTGGC +
Preference number: 4 (lower is better)
Translates to: TRFLLGLLLTMTRQPEVQEVRLC*WKVSLG
Trigger: GCCAAGCGAGACCTTCCACCAGCAAAGACGCACCTC...TTGGACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAACAGCAGCATCCGGTGTaGGCGCGGGTCATCTTTGTC +
Preference number: 4 (lower is better)
Translates to: KHRALTKQARNTSQQFLQQQHPV*ARVIFV
Trigger: GACAAAGATGACCCGCGCTCACACCGGATGCTGCTG...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCTGCCACCATGACATCTaGAGGGTTTTGTCTGAAGTC +
Preference number: 4 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLCHHDI*RVLSEV
Trigger: GACTTCAGACAAAACCCTTCAGATGTCATGGTGGCA...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp TATAGAAACCTACAGTCACAGAGCATCACTTGGCAATTCCGAGTTGGAATTCCTTCCTGTCTGCGAAACTaGAAATCGGCTAGAGGACTG +
Preference number: 4 (lower is better)
Translates to: YRNLQSQSITWQFRVGIPSCLRN*KSARGL
Trigger: CAGTCCTCTAGCCGATTTTCAGTTTCGCAGACAGGA...AGGAATTCCAACTCGGAATTGCCAAGTGATGCTCTGTGACTGTAGGTTTCTATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTATCACCATAAACAGTTaGCTCAGGGAGCATCAGATT +
Preference number: 4 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVITINS*LREHQI
Trigger: AATCTGATGCTCCCTGAGTCAACTGTTTATGGTGAT...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp ACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCAACTGGCATTCCATGACTaGAGGTTCGCCTACTGCCAC +
Preference number: 4 (lower is better)
Translates to: TRFLLGLLLTMTRQPEVQLAFHD*RFAYCH
Trigger: GTGGCAGTAGGCGAACCTGCAGTCATGGAATGCCAG...TTGGACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp GGGGGAGGTTCATTAAGGGTTAGGCAATCAATCAGCAACACTAAAAACCCAAGAGTGAGGTCTCCTGTCTaGGAAACTGAAAATCGGCTA +
Preference number: 4 (lower is better)
Translates to: GGGSLRVRQSISNTKNPRVRSPV*ETENRL
Trigger: TAGCCGATTTTCAGTTTCGCAGACAGGAGACCTCAC...TCTTGGGTTTTTAGTGTTGCTGATTGATTGCCTAACCCTTAATGAACCTCCCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCTCCATAGGCATTTGCTaGCCTCACCAGGAAAAGGTA +
Preference number: 4 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLSIGIC*PHQEKV
Trigger: TACCTTTTCCTGGTGAGGGCAGCAAATGCCTATGGA...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCGTCCGTTTCTCTTCTTaGGGTGTCTGTAAAGCCAGA +
Preference number: 4 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLVRFSS*GVCKAR
Trigger: TCTGGCTTTACAGACACCGCAAGAAGAGAAACGGAC...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp ACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCAATCTGCCAGCCATGGCTaGGTGGCAGGTTCACTAATG +
Preference number: 4 (lower is better)
Translates to: TRFLLGLLLTMTRQPEVQSASHG*VAGSLM
Trigger: CATTAGTGAACCTGCCACGCAGCCATGGCTGGCAGA...TTGGACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCTGTATTCTTCACTGTTaGTATGTGGGGGAGGATGCG +
Preference number: 4 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLCILHC*YVGEDA
Trigger: CGCATCCTCCCCCACATAGCAACAGTGAAGAATACA...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp TATAGAAACCTACAGTCACAGAGCATCACTTGGCAATTCCGAGTTGGAATTCCTCAACAGCACTCATGTTaGTGTCTGTGGACACAGGAC +
Preference number: 4 (lower is better)
Translates to: YRNLQSQSITWQFRVGIPQQHSC*CLWTQD
Trigger: GTCCTGTGTCCACAGACAGCAACATGAGTGCTGTTG...AGGAATTCCAACTCGGAATTGCCAAGTGATGCTCTGTGACTGTAGGTTTCTATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGCCTGGCTGGTGTTTCTaGTTCTTGGCGGGTCTGGCT +
Preference number: 4 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKPGWCF*FLAGLA
Trigger: AGCCAGACCCGCCAAGAAGCAGAAACACCAGCCAGG...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAACCGTACCTCCAGCTGTaGCTTGGACTGGACAGTGGG +
Preference number: 4 (lower is better)
Translates to: KHRALTKQARNTSQQFLQPYLQL*LGLDSG
Trigger: CCCACTGTCCAGTCCAAGGCACAGCTGGAGGTACGG...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGTCCTCTTGGCCGAGGTaGGTCTTTGCTGGTGGAAGG +
Preference number: 4 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKSSWPR*VFAGGR
Trigger: CCTTCCACCAGCAAAGACGCACCTCGGCCAAGAGGA...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TGTAGTTCTGTATGTGATAGACTTTTAGTTTATGCCAGCAAAGGGTGGTATAAATGGCCCCGTGGAGGCTaGCATTCCATGACTGCAGGT +
Preference number: 4 (lower is better)
Translates to: CSSVCDRLLVYASKGWYKWPRGG*HSMTAG
Trigger: ACCTGCAGTCATGGAATGCCAGCCTCCACGGGGCCA...TTTATACCACCCTTTGCTGGCATAAACTAAAAGTCTATCACATACAGAACTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAACTCTGGATGGCCCCGTaGAGGCTGGCATTCCATGAC +
Preference number: 4 (lower is better)
Translates to: KHRALTKQARNTSQQFLQLWMAP*RLAFHD
Trigger: GTCATGGAATGCCAGCCTCCACGGGGCCATCCAGAG...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp ACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCAACAGAATTGTGGGTGCTaGACTGCCTGTGGCCACACA +
Preference number: 4 (lower is better)
Translates to: TRFLLGLLLTMTRQPEVQQNCGC*TACGHT
Trigger: TGTGTGGCCACAGGCAGTCCAGCACCCACAATTCTG...TTGGACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TATAGAAACCTACAGTCACAGAGCATCACTTGGCAATTCCGAGTTGGAATTCCTTCTTGGGGGTTGAACTaGAACCCCAAATTCCTGGAC +
Preference number: 4 (lower is better)
Translates to: YRNLQSQSITWQFRVGIPSWGLN*NPKFLD
Trigger: GTCCAGGAATTTGGGGTTCCAGTTCAACCCCCAAGA...AGGAATTCCAACTCGGAATTGCCAAGTGATGCTCTGTGACTGTAGGTTTCTATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTCGCTGGGGATTAAGTTaGGGTCGGTGGGTCTTGGGG +
Preference number: 4 (lower is better)
Translates to: QLVVKNIHLRGICICSCFRWGLS*GRWVLG
Trigger: CCCCAAGACCCACCGACCCCAACTTAATCCCCAGCG...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAACGTGTCTGCCAGCCATaGCTGCGTGGCAGGTTCACT +
Preference number: 4 (lower is better)
Translates to: KHRALTKQARNTSQQFLQRVCQP*LRGRFT
Trigger: AGTGAACCTGCCACGCAGCCATGGCTGGCAGACACG...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCGTTGTATGGGATGGTTaGAGGGATCGTGTCATTTGC +
Preference number: 4 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLVVWDG*RDRVIC
Trigger: GCAAATGACACGATCCCTCCAACCATCCCATACAAC...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GGGGGAGGTTCATTAAGGGTTAGGCAATCAATCAGCAACACTAAAAACCCAAGAGTTGTATGGGATGGTTaGAGGGATCGTGTCATTTGC +
Preference number: 4 (lower is better)
Translates to: GGGSLRVRQSISNTKNPRVVWDG*RDRVIC
Trigger: GCAAATGACACGATCCCTCCAACCATCCCATACAAC...TCTTGGGTTTTTAGTGTTGCTGATTGATTGCCTAACCCTTAATGAACCTCCCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TGTAGTTCTGTATGTGATAGACTTTTAGTTTATGCCAGCAAAGGGTGGTATAAATGGGGAAATTGGCCGTaGCGGTGGAGGAGGACTCAC +
Preference number: 4 (lower is better)
Translates to: CSSVCDRLLVYASKGWYKWGNWP*RWRRTH
Trigger: GTGAGTCCTCCTCCACCGCCACGGCCAATTTCCCCA...TTTATACCACCCTTTGCTGGCATAAACTAAAAGTCTATCACATACAGAACTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAAATGAGGTGGGGAAATTaGCCGTGGCGGTGGAGGAGG +
Preference number: 4 (lower is better)
Translates to: KHRALTKQARNTSQQFLQMRWGN*PWRWRR
Trigger: CCTCCTCCACCGCCACGGCCAATTTCCCCACCTCAT...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGGCCGTAAGTATGAGGTaGGGAAATTGGCCGTGGCGG +
Preference number: 4 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKAVSMR*GNWPWR
Trigger: CCGCCACGGCCAATTTCCCCACCTCATACTTACGGC...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATCACTGGAGCGCCCACTaGAAATGTTGTCCTCTTCCG +
Preference number: 4 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDHWSAH*KCCPLP
Trigger: CGGAAGAGGACAACATTTCCAGTGGGCGCTCCAGTG...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TGTAGTTCTGTATGTGATAGACTTTTAGTTTATGCCAGCAAAGGGTGGTATAAATGGACACAGGACTCGTaGGCCTTGGGCACTGAGAGG +
Preference number: 4 (lower is better)
Translates to: CSSVCDRLLVYASKGWYKWTQDS*ALGTER
Trigger: CCTCTCAGTGCCCAAGGCCCACGAGTCCTGTGTCCA...TTTATACCACCCTTTGCTGGCATAAACTAAAAGTCTATCACATACAGAACTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TATAGAAACCTACAGTCACAGAGCATCACTTGGCAATTCCGAGTTGGAATTCCTGTTCCTGTGCCTCTCTaGGGTCACTTGGATTTGTTC +
Preference number: 4 (lower is better)
Translates to: YRNLQSQSITWQFRVGIPVPVPL*GHLDLF
Trigger: GAACAAATCCAAGTGACCCCAGAGAGGCACAGGAAC...AGGAATTCCAACTCGGAATTGCCAAGTGATGCTCTGTGACTGTAGGTTTCTATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATGGTGGAAAATCTTCCTaGCGAAGACGGGAGCCTGAA +
Preference number: 4 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDGGKSS*RRREPE
Trigger: TTCAGGCTCCCGTCTTCGTCAGGAAGATTTTCCACC...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023600.8
CDS-3UTR TCA 90 bp TGTAGTTCTGTATGTGATAGACTTTTAGTTTATGCCAGCAAAGGGTGGTATAAAGAGGCTGGCATTCCATaGCTGCAGGTTCGCCTACTG +
Preference number: 4 (lower is better)
Translates to: CSSVCDRLLVYASKGWYKEAGIP*LQVRLL
Trigger: CAGTAGGCGAACCTGCAGTCATGGAATGCCAGCCTC...TTTATACCACCCTTTGCTGGCATAAACTAAAAGTCTATCACATACAGAACTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp ACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCAACCAGTTGCTTCGCACTaGAACGTCACAGTTCTTCCC +
Preference number: 4 (lower is better)
Translates to: TRFLLGLLLTMTRQPEVQPVASH*NVTVLP
Trigger: GGGAAGAACTGTGACGTTTCAGTGCGAAGCAACTGG...TTGGACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATTCCACTGCTACAGTCTaGTTCACAGGACCTTGCCGA +
Preference number: 4 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDSTATV*FTGPCR
Trigger: TCGGCAAGGTCCTGTGAATCAGACTGTAGCAGTGGA...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGCCGCATACGTGCTGGTaGGTCCGTTTCTCTTCTTGC +
Preference number: 4 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKPHTCW*VRFSSC
Trigger: GCAAGAAGAGAAACGGACTCACCAGCACGTATGCGG...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCTCCATGATGTTATACTaGATTGGTGCCACTTCCGGT +
Preference number: 4 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLSMMLY*IGATSG
Trigger: ACCGGAAGTGGCACCAATTCAGTATAACATCATGGA...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATACTACTGCCCCGATCTaGGCTGTTATAAGACCCTCC +
Preference number: 4 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDTTAPI*AVIRPS
Trigger: GGAGGGTCTTATAACAGCTCAGATCGGGGCAGTAGT...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTCGAGTTTTGGCACCATaGCAGGCCGTACCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: QLVVKNIHLRGICICSCFRVLAP*QAVPPA
Trigger: AGCTGGAGGTACGGCCTGTCATGGTGCCAAAACTCG...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp AGAACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCCCCCACCATGTTGGTaGCAACGCAAACATACTTGC +
Preference number: 4 (lower is better)
Translates to: RTRFLLGLLLTMTRQPEVPPPCW*QRKHTC
Trigger: GCAAGTATGTTTGCGTTGGCACCAACATGGTGGGGG...GACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGTTCT
44% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATTGGGGGAGGCCGGTCTaGAATCACATCAGTAACTTC +
Preference number: 4 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDWGRPV*NHISNF
Trigger: GAAGTTACTGATGTGATTGCAGACCGGCCTCCCCCA...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp TGTAGTTCTGTATGTGATAGACTTTTAGTTTATGCCAGCAAAGGGTGGTATAAACCACAGAATTGTGGGTaGTGGACTGCCTGTGGCCAC +
Preference number: 4 (lower is better)
Translates to: CSSVCDRLLVYASKGWYKPQNCG*WTACGH
Trigger: GTGGCCACAGGCAGTCCAGCACCCACAATTCTGTGG...TTTATACCACCCTTTGCTGGCATAAACTAAAAGTCTATCACATACAGAACTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGTGCCTTTGGTGTCCGTaGCCCTTTCTTGTGGCCTTG +
Preference number: 4 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKCLWCP*PFLVAL
Trigger: CAAGGCCACAAGAAAGGGGCACGGACACCAAAGGCA...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTCCTGGCTGGTGTTTCTaGTTCTTGGCGGGTCTGGCT +
Preference number: 4 (lower is better)
Translates to: QLVVKNIHLRGICICSCFPGWCF*FLAGLA
Trigger: AGCCAGACCCGCCAAGAAGCAGAAACACCAGCCAGG...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TGTAGTTCTGTATGTGATAGACTTTTAGTTTATGCCAGCAAAGGGTGGTATAAACCTTTTTCCAGGAGATaGTGGGCTCTGGATGGCCCC +
Preference number: 4 (lower is better)
Translates to: CSSVCDRLLVYASKGWYKPFSRR*WALDGP
Trigger: GGGGCCATCCAGAGCCCACCATCTCCTGGAAAAAGG...TTTATACCACCCTTTGCTGGCATAAACTAAAAGTCTATCACATACAGAACTACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTTTTTACAACGAAATGTaGCGGCTCTTGAACTGTCAA +
Preference number: 4 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVFYNEM*RLLNCQ
Trigger: TTGACAGTTCAAGAGCCGCCACATTTCGTTGTAAAA...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
44% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATTTCCCCAGTTCTCTTTaGACCTGCTTGTGGTCCACC +
Preference number: 4 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDFPSSL*TCLWST
Trigger: GGTGGACCACAAGCAGGTCCAAAGAGAACTGGGGAA...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TATAGAAACCTACAGTCACAGAGCATCACTTGGCAATTCCGAGTTGGAATTCCTAGGAGGAAGAAAGGATaGTCGGGTTGTGCAGATGTA +
Preference number: 4 (lower is better)
Translates to: YRNLQSQSITWQFRVGIPRRKKG*SGCADV
Trigger: TACATCTGCACAACCCGACCATCCTTTCTTCCTCCT...AGGAATTCCAACTCGGAATTGCCAAGTGATGCTCTGTGACTGTAGGTTTCTATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TGTAGTTCTGTATGTGATAGACTTTTAGTTTATGCCAGCAAAGGGTGGTATAAACCGATTCACCATGGCTaGCTCCAGATGGGCGGTAGA +
Preference number: 4 (lower is better)
Translates to: CSSVCDRLLVYASKGWYKPIHHG*LQMGGR
Trigger: TCTACCGCCCATCTGGAGCCAGCCATGGTGAATCGG...TTTATACCACCCTTTGCTGGCATAAACTAAAAGTCTATCACATACAGAACTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TATAGAAACCTACAGTCACAGAGCATCACTTGGCAATTCCGAGTTGGAATTCCTATAGGACTGGTTGTATaGGATGGTTGGAGGGATCGT +
Preference number: 4 (lower is better)
Translates to: YRNLQSQSITWQFRVGIPIGLVV*DGWRDR
Trigger: ACGATCCCTCCAACCATCCCATACAACCAGTCCTAT...AGGAATTCCAACTCGGAATTGCCAAGTGATGCTCTGTGACTGTAGGTTTCTATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAATTCACTGTTGCTATGTaGGGGAGGATGCGCCGGAGG +
Preference number: 4 (lower is better)
Translates to: KHRALTKQARNTSQQFLQFTVAM*GRMRRR
Trigger: CCTCCGGCGCATCCTCCCCCACATAGCAACAGTGAA...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCTTCGGGTCTGCATTTTaGCAACTTCCATGTCAGCTT +
Preference number: 4 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLFGSAF*QLPCQL
Trigger: AAGCTGACATGGAAGTTGCCAAAATGCAGACCCGAA...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAACAAGGTCCCCAACACTaGATGCTGGGGTCTGCTCCA +
Preference number: 4 (lower is better)
Translates to: KHRALTKQARNTSQQFLQQGPQH*MLGSAP
Trigger: TGGAGCAGACCCCAGCATCCAGTGTTGGGGACCTTG...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp AGAACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCGGTGTTTCTGCTTCTTaGCGGGTCTGGCTTTCTGGA +
Preference number: 4 (lower is better)
Translates to: RTRFLLGLLLTMTRQPEVGVSAS*RVWLSG
Trigger: TCCAGAAAGCCAGACCCGCCAAGAAGCAGAAACACC...GACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGTTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGCGCAGATGTCCTGGCTaGTGTTTCTGCTTCTTGGCG +
Preference number: 4 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKRRCPG*CFCFLA
Trigger: CGCCAAGAAGCAGAAACACCAGCCAGGACATCTGCG...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TGTAGTTCTGTATGTGATAGACTTTTAGTTTATGCCAGCAAAGGGTGGTATAAAAGCAGGTGGTGGCACTaGAGGGGGTGGAAGATCATC +
Preference number: 4 (lower is better)
Translates to: CSSVCDRLLVYASKGWYKSRWWH*RGWKII
Trigger: GATGATCTTCCACCCCCTCCAGTGCCACCACCTGCT...TTTATACCACCCTTTGCTGGCATAAACTAAAAGTCTATCACATACAGAACTACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAAGTGGAAGGTCTCGCTTaGCTGCCTTTGTTCCTCGGC +
Preference number: 4 (lower is better)
Translates to: KHRALTKQARNTSQQFLQVEGLA*LPLFLG
Trigger: GCCGAGGAACAAAGGCAGCCAAGCGAGACCTTCCAC...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAAGAGGTGCGTCTTTGCTaGTGGAAGGTCTCGCTTGGC +
Preference number: 4 (lower is better)
Translates to: KHRALTKQARNTSQQFLQEVRLC*WKVSLG
Trigger: GCCAAGCGAGACCTTCCACCAGCAAAGACGCACCTC...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGCATCGTTATCAGAGGTaGGGGCTGGCGTTCCGTTGT +
Preference number: 4 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKHRYQR*GLAFRC
Trigger: ACAACGGAACGCCAGCCCCCACCTCTGATAACGATG...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp ACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCAATCCTGTCTGCGAAACTaGAAATCGGCTAGAGGACTG +
Preference number: 4 (lower is better)
Translates to: TRFLLGLLLTMTRQPEVQSCLRN*KSARGL
Trigger: CAGTCCTCTAGCCGATTTTCAGTTTCGCAGACAGGA...TTGGACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp ACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCAAGACACGGGGTTTCCGTaGGAATCTAACTGGATGAAC +
Preference number: 4 (lower is better)
Translates to: TRFLLGLLLTMTRQPEVQDTGFP*ESNWMN
Trigger: GTTCATCCAGTTAGATTCTCACGGAAACCCCGTGTC...TTGGACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp TGTAGTTCTGTATGTGATAGACTTTTAGTTTATGCCAGCAAAGGGTGGTATAAAGCTGCCCTGATGGATTaGCAAAACGCCCGTCCTTCA +
Preference number: 4 (lower is better)
Translates to: CSSVCDRLLVYASKGWYKAALMD*QNARPS
Trigger: TGAAGGACGGGCGTTTTGTCAATCCATCAGGGCAGC...TTTATACCACCCTTTGCTGGCATAAACTAAAAGTCTATCACATACAGAACTACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp ACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCAATTGTTCGCAGGTCAGTaGCTTGTCTTCCATCCAGAG +
Preference number: 4 (lower is better)
Translates to: TRFLLGLLLTMTRQPEVQLFAGQ*LVFHPE
Trigger: CTCTGGATGGAAGACAAGTCACTGACCTGCGAACAA...TTGGACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAAGGTGGAAAATCTTCCTaGCGAAGACGGGAGCCTGTG +
Preference number: 4 (lower is better)
Translates to: KHRALTKQARNTSQQFLQGGKSS*RRREPV
Trigger: CACAGGCTCCCGTCTTCGTCAGGAAGATTTTCCACC...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp TGTAGTTCTGTATGTGATAGACTTTTAGTTTATGCCAGCAAAGGGTGGTATAAACTGGCATTCCATGACTaGAGGTTCGCCTACTGCCAC +
Preference number: 4 (lower is better)
Translates to: CSSVCDRLLVYASKGWYKLAFHD*RFAYCH
Trigger: GTGGCAGTAGGCGAACCTGCAGTCATGGAATGCCAG...TTTATACCACCCTTTGCTGGCATAAACTAAAAGTCTATCACATACAGAACTACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGCCCCCACCATGTTGGTaGCAACGCAAACATACTTGC +
Preference number: 4 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKPPPCW*QRKHTC
Trigger: GCAAGTATGTTTGCGTTGGCACCAACATGGTGGGGG...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp ACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCAACCAGCTGCTACCAGATaGATGGCTGAAGGCTTCTAT +
Preference number: 4 (lower is better)
Translates to: TRFLLGLLLTMTRQPEVQPAATR*MAEGFY
Trigger: ATAGAAGCCTTCAGCCATGCATCTGGTAGCAGCTGG...TTGGACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp ACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCAATGTTTTCACATTTTCTaGCGCCGTCTGCCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: TRFLLGLLLTMTRQPEVQCFHIF*RRLPAA
Trigger: AGCAGCTGGCAGACGGCGGCAGAAAATGTGAAAACA...TTGGACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp GGGGGAGGTTCATTAAGGGTTAGGCAATCAATCAGCAACACTAAAAACCCAAGACGATCTATCTGTCCTTaGTTCTATAGACGCGAGTTT +
Preference number: 4 (lower is better)
Translates to: GGGSLRVRQSISNTKNPRRSICP*FYRREF
Trigger: AAACTCGCGTCTATAGAAGCAAGGACAGATAGATCG...TCTTGGGTTTTTAGTGTTGCTGATTGATTGCCTAACCCTTAATGAACCTCCCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp TATAGAAACCTACAGTCACAGAGCATCACTTGGCAATTCCGAGTTGGAATTCCTAAGTACTTGCATTTCTaGCATATTCCTTCGGCCCAC +
Preference number: 4 (lower is better)
Translates to: YRNLQSQSITWQFRVGIPKYLHF*HIPSAH
Trigger: GTGGGCCGAAGGAATATGGCAGAAATGCAAGTACTT...AGGAATTCCAACTCGGAATTGCCAAGTGATGCTCTGTGACTGTAGGTTTCTATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp AGAACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCTGGCAGGTTCTCCTTTaGAGACGATCAGGTCTGAAG +
Preference number: 4 (lower is better)
Translates to: RTRFLLGLLLTMTRQPEVWQVLL*RRSGLK
Trigger: CTTCAGACCTGATCGTCTCCAAAGGAGAACCTGCCA...GACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGTTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATGTTCCCCCACCATGTTaGTGCCAACGCAAACATACT +
Preference number: 4 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDVPPPC*CQRKHT
Trigger: AGTATGTTTGCGTTGGCACCAACATGGTGGGGGAAC...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTTTGTGGTCCACCCCTTaGCTGGTTGGTGGGACATCT +
Preference number: 4 (lower is better)
Translates to: QLVVKNIHLRGICICSCFLWSTP*LVGGTS
Trigger: AGATGTCCCACCAACCAGCCAAGGGGTGGACCACAA...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAACTTTGGACCTGCTTGTaGTCCACCCCTTGGCTGGTT +
Preference number: 4 (lower is better)
Translates to: KHRALTKQARNTSQQFLQLWTCL*STPWLV
Trigger: AACCAGCCAAGGGGTGGACCACAAGCAGGTCCAAAG...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGGTCCTCCTCCTCTTCTaGGGCATCGGTATCCATATC +
Preference number: 4 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKVLLLF*GIGIHI
Trigger: GATATGGATACCGATGCCCCAGAAGAGGAGGAGGAC...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTCACTGGAGCGCCCACTaGAAATGTTGTCCTCTTCCG +
Preference number: 4 (lower is better)
Translates to: QLVVKNIHLRGICICSCFHWSAH*KCCPLP
Trigger: CGGAAGAGGACAACATTTCCAGTGGGCGCTCCAGTG...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TGTAGTTCTGTATGTGATAGACTTTTAGTTTATGCCAGCAAAGGGTGGTATAAATCATGTTGCTGTCTGTaGACACAGGACTCGTGGGCC +
Preference number: 4 (lower is better)
Translates to: CSSVCDRLLVYASKGWYKSCCCL*TQDSWA
Trigger: GGCCCACGAGTCCTGTGTCCACAGACAGCAACATGA...TTTATACCACCCTTTGCTGGCATAAACTAAAAGTCTATCACATACAGAACTACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGGCGGGTCTGGCTTTCTaGATCACAACAGCACTCATG +
Preference number: 4 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKAGLAF*ITTALM
Trigger: CATGAGTGCTGTTGTGATCCAGAAAGCCAGACCCGC...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAACGCAGATGTCCTGGCTaGTGTTTCTGCTTCTTGGCG +
Preference number: 4 (lower is better)
Translates to: KHRALTKQARNTSQQFLQRRCPG*CFCFLA
Trigger: CGCCAAGAAGCAGAAACACCAGCCAGGACATCTGCG...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTGGAGACGATCAGGTCTaGAGGGTGTTCAACAATGCG +
Preference number: 4 (lower is better)
Translates to: QLVVKNIHLRGICICSCFGDDQV*RVFNNA
Trigger: CGCATTGTTGAACACCCTTCAGACCTGATCGTCTCC...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAATGCCACACAAGTGTATaGTCCCATGTCGCCAGCAGT +
Preference number: 4 (lower is better)
Translates to: KHRALTKQARNTSQQFLQCHTSV*SHVASS
Trigger: ACTGCTGGCGACATGGGATCATACACTTGTGTGGCA...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp ACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCAAGAGAAAAGTAGATTCTaGCTCCCCTCTCTCCTCCAA +
Preference number: 4 (lower is better)
Translates to: TRFLLGLLLTMTRQPEVQEKSRF*LPSLLQ
Trigger: TTGGAGGAGAGAGGGGAGTCAGAATCTACTTTTCTC...TTGGACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp AGAACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCCGAGAATCTTGGGTTaGAACAAGGACTCCATCCTT +
Preference number: 4 (lower is better)
Translates to: RTRFLLGLLLTMTRQPEVPRILG*NKDSIL
Trigger: AAGGATGGAGTCCTTGTTTCAACCCAAGATTCTCGG...GACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGTTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp TGTAGTTCTGTATGTGATAGACTTTTAGTTTATGCCAGCAAAGGGTGGTATAAACCAGTGCACTTCGACTaGGGAGGAAGAAAGGATGGT +
Preference number: 4 (lower is better)
Translates to: CSSVCDRLLVYASKGWYKPVHFD*GGRKDG
Trigger: ACCATCCTTTCTTCCTCCTCAGTCGAAGTGCACTGG...TTTATACCACCCTTTGCTGGCATAAACTAAAAGTCTATCACATACAGAACTACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTCCAGTGCACTTCGACTaGGGAGGAAGAAAGGATGGT +
Preference number: 4 (lower is better)
Translates to: QLVVKNIHLRGICICSCFPVHFD*GGRKDG
Trigger: ACCATCCTTTCTTCCTCCTCAGTCGAAGTGCACTGG...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCAGGTTTTGGCAAATTTaGTTTCACTGTCTGCTCCTT +
Preference number: 4 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLRFWQI*FHCLLL
Trigger: AAGGAGCAGACAGTGAAATCAAATTTGCCAAAACCT...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGGACACGGGGTTTCCGTaGGAATCTAACTGGATGAAC +
Preference number: 4 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKDTGFP*ESNWMN
Trigger: GTTCATCCAGTTAGATTCTCACGGAAACCCCGTGTC...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATCAAAATCAGCGTCAGTaGAAAAGGAGCCATCGGATG +
Preference number: 4 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDQNQRQ*KRSHRM
Trigger: CATCCGATGGCTCCTTTTTCACTGACGCTGATTTTG...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATCAACGCAAACATACTTaGCAGCATCGCTTTTACGCG +
Preference number: 4 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDQRKHT*QHRFYA
Trigger: CGCGTAAAAGCGATGCTGGCAAGTATGTTTGCGTTG...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp GGGGGAGGTTCATTAAGGGTTAGGCAATCAATCAGCAACACTAAAAACCCAAGACTCACATTTAAATTCTaGACTGTCATCCACAGTCAC +
Preference number: 4 (lower is better)
Translates to: GGGSLRVRQSISNTKNPRLTFKF*TVIHSH
Trigger: GTGACTGTGGATGACAGTGCAGAATTTAAATGTGAG...TCTTGGGTTTTTAGTGTTGCTGATTGATTGCCTAACCCTTAATGAACCTCCCCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATGTGAGGTCTCCTGTCTaGGAAACTGAAAATCGGCTA +
Preference number: 4 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDVRSPV*ETENRL
Trigger: TAGCCGATTTTCAGTTTCGCAGACAGGAGACCTCAC...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp TGTAGTTCTGTATGTGATAGACTTTTAGTTTATGCCAGCAAAGGGTGGTATAAATGGGGGAGGCCGGTCTaGAATCACATCAGTAACTTC +
Preference number: 4 (lower is better)
Translates to: CSSVCDRLLVYASKGWYKWGRPV*NHISNF
Trigger: GAAGTTACTGATGTGATTGCAGACCGGCCTCCCCCA...TTTATACCACCCTTTGCTGGCATAAACTAAAAGTCTATCACATACAGAACTACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTAGTTCTCTTTGGACCTaGTTGTGGTCCACCCCTTGG +
Preference number: 4 (lower is better)
Translates to: QLVVKNIHLRGICICSCFSSLWT*LWSTPW
Trigger: CCAAGGGGTGGACCACAAGCAGGTCCAAAGAGAACT...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATGTCCGTTTCTCTTCTTaGGGTGTCTGTAAAGCCAGA +
Preference number: 4 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDVRFSS*GVCKAR
Trigger: TCTGGCTTTACAGACACCGCAAGAAGAGAAACGGAC...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATTGTATTCTTCACTGTTaGTATGTGGGGGAGGATGCG +
Preference number: 4 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDCILHC*YVGEDA
Trigger: CGCATCCTCCCCCACATAGCAACAGTGAAGAATACA...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp GGGGGAGGTTCATTAAGGGTTAGGCAATCAATCAGCAACACTAAAAACCCAAGAAATCCCCCAAGTACTTaGATTTCTGCCATATTCCTT +
Preference number: 4 (lower is better)
Translates to: GGGSLRVRQSISNTKNPRNPPST*ISAIFL
Trigger: AAGGAATATGGCAGAAATGCAAGTACTTGGGGGATT...TCTTGGGTTTTTAGTGTTGCTGATTGATTGCCTAACCCTTAATGAACCTCCCCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCCTACTCTTCCGTCCATaGACTATGCGTAAGAAAAAT +
Preference number: 4 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLLLFRP*TMRKKN
Trigger: ATTTTTCTTACGCATAGTCCATGGACGGAAGAGTAG...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp AGAACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCTCGGATTTCATATCTaGATTTGGGCAGCTCTCCGT +
Preference number: 4 (lower is better)
Translates to: RTRFLLGLLLTMTRQPEVLGFHI*IWAALR
Trigger: ACGGAGAGCTGCCCAAATCCAGATATGAAATCCGAG...GACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGTTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TGTAGTTCTGTATGTGATAGACTTTTAGTTTATGCCAGCAAAGGGTGGTATAAATCGGCTAGAGGACTGTaGAGGCTGGTAGGAGAAAAG +
Preference number: 4 (lower is better)
Translates to: CSSVCDRLLVYASKGWYKSARGL*RLVGEK
Trigger: CTTTTCTCCTACCAGCCTCCACAGTCCTCTAGCCGA...TTTATACCACCCTTTGCTGGCATAAACTAAAAGTCTATCACATACAGAACTACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATAGGAGGAAGAAAGGATaGTCGGGTTGTGCAGATGTA +
Preference number: 4 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDRRKKG*SGCADV
Trigger: TACATCTGCACAACCCGACCATCCTTTCTTCCTCCT...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp AGAACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCACTGGTTGTATGGGATaGTTGGAGGGATCGTGTCAT +
Preference number: 4 (lower is better)
Translates to: RTRFLLGLLLTMTRQPEVTGCMG*LEGSCH
Trigger: ATGACACGATCCCTCCAACCATCCCATACAACCAGT...GACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGTTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTTCCTGTAACATGGGCTaGAGCTCTTCCTGGGGAGAA +
Preference number: 4 (lower is better)
Translates to: QLVVKNIHLRGICICSCFSCNMG*SSSWGE
Trigger: TTCTCCCCAGGAAGAGCTCCAGCCCATGTTACAGGA...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TGTAGTTCTGTATGTGATAGACTTTTAGTTTATGCCAGCAAAGGGTGGTATAAAGACAATCCTGTAACATaGGCTGGAGCTCTTCCTGGG +
Preference number: 4 (lower is better)
Translates to: CSSVCDRLLVYASKGWYKDNPVT*AGALPG
Trigger: CCCAGGAAGAGCTCCAGCCCATGTTACAGGATTGTC...TTTATACCACCCTTTGCTGGCATAAACTAAAAGTCTATCACATACAGAACTACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTGACAATCCTGTAACATaGGCTGGAGCTCTTCCTGGG +
Preference number: 4 (lower is better)
Translates to: QLVVKNIHLRGICICSCFDNPVT*AGALPG
Trigger: CCCAGGAAGAGCTCCAGCCCATGTTACAGGATTGTC...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTGGTGTTTCTGCTTCTTaGCGGGTCTGGCTTTCTGGA +
Preference number: 4 (lower is better)
Translates to: QLVVKNIHLRGICICSCFGVSAS*RVWLSG
Trigger: TCCAGAAAGCCAGACCCGCCAAGAAGCAGAAACACC...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGCTCTCTGGGGTCACTTaGATTTGTTCGCAGGTCAGT +
Preference number: 4 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKLSGVT*ICSQVS
Trigger: ACTGACCTGCGAACAAATCCAAGTGACCCCAGAGAG...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTTTGTTCGCAGGTCAGTaGCTTGTCTTCCATCCAGAG +
Preference number: 4 (lower is better)
Translates to: QLVVKNIHLRGICICSCFLFAGQ*LVFHPE
Trigger: CTCTGGATGGAAGACAAGTCACTGACCTGCGAACAA...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp ACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCAAAAGGGTGTTCAACAATaGGGGGTGGAAAATCTTCCT +
Preference number: 4 (lower is better)
Translates to: TRFLLGLLLTMTRQPEVQKGVQQ*GVENLP
Trigger: AGGAAGATTTTCCACCCCGCATTGTTGAACACCCTT...TTGGACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp AGAACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCAAGGGTGTTCAACAATaGGGGGTGGAAAATCTTCCT +
Preference number: 4 (lower is better)
Translates to: RTRFLLGLLLTMTRQPEVKGVQQ*GVENLP
Trigger: AGGAAGATTTTCCACCCCGCATTGTTGAACACCCTT...GACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGTTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp TATAGAAACCTACAGTCACAGAGCATCACTTGGCAATTCCGAGTTGGAATTCCTTCCGTCCATGGACTATaGGTAAGAAAAATAAAGACC +
Preference number: 4 (lower is better)
Translates to: YRNLQSQSITWQFRVGIPSVHGL*VRKIKT
Trigger: GGTCTTTATTTTTCTTACGCATAGTCCATGGACGGA...AGGAATTCCAACTCGGAATTGCCAAGTGATGCTCTGTGACTGTAGGTTTCTATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGTCCATAGGCATTTGCTaGCCTCACCAGGAAAAGGTA +
Preference number: 4 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKSIGIC*PHQEKV
Trigger: TACCTTTTCCTGGTGAGGGCAGCAAATGCCTATGGA...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATAATTCCATAGGCATTTaGTGCCCTCACCAGGAAAAG +
Preference number: 4 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDNSIGI*CPHQEK
Trigger: CTTTTCCTGGTGAGGGCAGCAAATGCCTATGGAATT...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGGATAATCCAACAGGCTaGCCCAATGCCTGCAATGAA +
Preference number: 4 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKDNPTG*PNACNE
Trigger: TTCATTGCAGGCATTGGGGCAGCCTGTTGGATTATC...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAAAGTCATTGTGGTTGTTaGCTGTGTTGGGCCACGTGT +
Preference number: 4 (lower is better)
Translates to: KHRALTKQARNTSQQFLQSHCGC*LCWATC
Trigger: ACACGTGGCCCAACACAGGCAACAACCACAATGACT...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp AGAACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCGTTATACTGAATTGGTaGCACTTCCGGTTTCTGCTG +
Preference number: 4 (lower is better)
Translates to: RTRFLLGLLLTMTRQPEVVILNW*HFRFLL
Trigger: CAGCAGAAACCGGAAGTGGCACCAATTCAGTATAAC...GACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGTTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp TGTAGTTCTGTATGTGATAGACTTTTAGTTTATGCCAGCAAAGGGTGGTATAAATCCCGGATGTACTACTaGCCCGATCTGAGCTGTTAT +
Preference number: 4 (lower is better)
Translates to: CSSVCDRLLVYASKGWYKSRMYY*PDLSCY
Trigger: ATAACAGCTCAGATCGGGGCAGTAGTACATCCGGGA...TTTATACCACCCTTTGCTGGCATAAACTAAAAGTCTATCACATACAGAACTACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp ACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCAAAAGTACTTGCATTTCTaGCATATTCCTTCGGCCCAC +
Preference number: 4 (lower is better)
Translates to: TRFLLGLLLTMTRQPEVQKYLHF*HIPSAH
Trigger: GTGGGCCGAAGGAATATGGCAGAAATGCAAGTACTT...TTGGACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATTTCAACAATGCGGGGTaGAAAATCTTCCTGACGAAG +
Preference number: 4 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDFNNAG*KIFLTK
Trigger: CTTCGTCAGGAAGATTTTCCACCCCGCATTGTTGAA...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGCTCGGATTTCATATCTaGATTTGGGCAGCTCTCCGT +
Preference number: 4 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKLGFHI*IWAALR
Trigger: ACGGAGAGCTGCCCAAATCCAGATATGAAATCCGAG...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAATCTTGGGGGTTGAACTaGAACCCCAAATTCCTGGAC +
Preference number: 4 (lower is better)
Translates to: KHRALTKQARNTSQQFLQSWGLN*NPKFLD
Trigger: GTCCAGGAATTTGGGGTTCCAGTTCAACCCCCAAGA...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTATGGAGCAGTCATTGTaGTTGTTGCCTGTGTTGGGC +
Preference number: 4 (lower is better)
Translates to: QLVVKNIHLRGICICSCFMEQSL*LLPVLG
Trigger: GCCCAACACAGGCAACAACCACAATGACTGCTCCAT...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TATAGAAACCTACAGTCACAGAGCATCACTTGGCAATTCCGAGTTGGAATTCCTGTTGGTTGTTATAATTaGCTATACAATCAGCTGGGC +
Preference number: 4 (lower is better)
Translates to: YRNLQSQSITWQFRVGIPVGCYN*LYNQLG
Trigger: GCCCAGCTGATTGTATAGCCAATTATAACAACCAAC...AGGAATTCCAACTCGGAATTGCCAAGTGATGCTCTGTGACTGTAGGTTTCTATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAATGCCACCATGACATCTaGAGGGTTTTGTCTGAAGTC +
Preference number: 4 (lower is better)
Translates to: KHRALTKQARNTSQQFLQCHHDI*RVLSEV
Trigger: GACTTCAGACAAAACCCTTCAGATGTCATGGTGGCA...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTTTTATCATCCAGGGGTaGGCCATCCTTTTTCCAGGA +
Preference number: 4 (lower is better)
Translates to: QLVVKNIHLRGICICSCFFIIQG*AILFPG
Trigger: TCCTGGAAAAAGGATGGCTCACCCCTGGATGATAAA...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
40% GC, longest homopolymer 6 nt, total homopolymer stretches 20 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp TGTAGTTCTGTATGTGATAGACTTTTAGTTTATGCCAGCAAAGGGTGGTATAAATTTATCATCCAGGGGTaGGCCATCCTTTTTCCAGGA +
Preference number: 4 (lower is better)
Translates to: CSSVCDRLLVYASKGWYKFIIQG*AILFPG
Trigger: TCCTGGAAAAAGGATGGCTCACCCCTGGATGATAAA...TTTATACCACCCTTTGCTGGCATAAACTAAAAGTCTATCACATACAGAACTACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp TGTAGTTCTGTATGTGATAGACTTTTAGTTTATGCCAGCAAAGGGTGGTATAAAGAGAAAAGTAGATTCTaGCTCCCCTCTCTCCTCCAA +
Preference number: 4 (lower is better)
Translates to: CSSVCDRLLVYASKGWYKEKSRF*LPSLLQ
Trigger: TTGGAGGAGAGAGGGGAGTCAGAATCTACTTTTCTC...TTTATACCACCCTTTGCTGGCATAAACTAAAAGTCTATCACATACAGAACTACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp TGTAGTTCTGTATGTGATAGACTTTTAGTTTATGCCAGCAAAGGGTGGTATAAACCGAGAATCTTGGGTTaGAACAAGGACTCCATCCTT +
Preference number: 4 (lower is better)
Translates to: CSSVCDRLLVYASKGWYKPRILG*NKDSIL
Trigger: AAGGATGGAGTCCTTGTTTCAACCCAAGATTCTCGG...TTTATACCACCCTTTGCTGGCATAAACTAAAAGTCTATCACATACAGAACTACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATCGTTTTCACTGGATCTaGTATTTGGCTTGGATCACT +
Preference number: 4 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDRFHWI*YLAWIT
Trigger: AGTGATCCAAGCCAAATATCAGATCCAGTGAAAACG...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAACAAAATCAGCGTCAGTaGAAAAGGAGCCATCGGATG +
Preference number: 4 (lower is better)
Translates to: KHRALTKQARNTSQQFLQQNQRQ*KRSHRM
Trigger: CATCCGATGGCTCCTTTTTCACTGACGCTGATTTTG...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTCAACGCAAACATACTTaGCAGCATCGCTTTTACGCG +
Preference number: 4 (lower is better)
Translates to: QLVVKNIHLRGICICSCFQRKHT*QHRFYA
Trigger: CGCGTAAAAGCGATGCTGGCAAGTATGTTTGCGTTG...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGGTCATCCACAGTCACTaGCAAATTACTGGGTCTCTT +
Preference number: 4 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKVIHSH*QITGSL
Trigger: AAGAGACCCAGTAATTTGGCAGTGACTGTGGATGAC...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGAATTCCATAGGCATTTaGTGCCCTCACCAGGAAAAG +
Preference number: 4 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKNSIGI*CPHQEK
Trigger: CTTTTCCTGGTGAGGGCAGCAAATGCCTATGGAATT...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGGTTGGTGGGACATCTTaGGTTTTCACTGGATCTGAT +
Preference number: 4 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKVGGTS*VFTGSD
Trigger: ATCAGATCCAGTGAAAACGCAAGATGTCCCACCAAC...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGAGGATGGTCGGGTTGTaGAGATGTAAGACAACATTC +
Preference number: 4 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKRMVGL*RCKTTF
Trigger: GAATGTTGTCTTACATCTGCACAACCCGACCATCCT...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTGATAATCCAACAGGCTaGCCCAATGCCTGCAATGAA +
Preference number: 4 (lower is better)
Translates to: QLVVKNIHLRGICICSCFDNPTG*PNACNE
Trigger: TTCATTGCAGGCATTGGGGCAGCCTGTTGGATTATC...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp AGAACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCGATCTATCTGTCCTTaGTTCTATAGACGCGAGTTT +
Preference number: 4 (lower is better)
Translates to: RTRFLLGLLLTMTRQPEVRSICP*FYRREF
Trigger: AAACTCGCGTCTATAGAAGCAAGGACAGATAGATCG...GACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGTTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp AGAACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCTCACTGCCAAATTACTaGGTCTCTTCACAAACGATG +
Preference number: 4 (lower is better)
Translates to: RTRFLLGLLLTMTRQPEVSLPNY*VSSQTM
Trigger: CATCGTTTGTGAAGAGACCCAGTAATTTGGCAGTGA...GACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGTTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp AGAACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCTTTCATATCTGGATTTaGGCAGCTCTCCGTCATCTT +
Preference number: 4 (lower is better)
Translates to: RTRFLLGLLLTMTRQPEVFHIWI*AALRHL
Trigger: AAGATGACGGAGAGCTGCCCAAATCCAGATATGAAA...GACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGTTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp ACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCAATTTCATATCTGGATTTaGGCAGCTCTCCGTCATCTT +
Preference number: 4 (lower is better)
Translates to: TRFLLGLLLTMTRQPEVQFHIWI*AALRHL
Trigger: AAGATGACGGAGAGCTGCCCAAATCCAGATATGAAA...TTGGACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGATGGCTGGCTCCAGATaGGCGGTAGAGAATTTTATA +
Preference number: 4 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKMAGSR*AVENFI
Trigger: TATAAAATTCTCTACCGCCCATCTGGAGCCAGCCAT...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATCCCGTCCTTCAGATTTaGGCTATTGAAGGTTTTCAT +
Preference number: 4 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDPVLQI*AIEGFH
Trigger: ATGAAAACCTTCAATAGCCCAAATCTGAAGGACGGG...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAAACTGGTTGTATGGGATaGTTGGAGGGATCGTGTCAT +
Preference number: 4 (lower is better)
Translates to: KHRALTKQARNTSQQFLQTGCMG*LEGSCH
Trigger: ATGACACGATCCCTCCAACCATCCCATACAACCAGT...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TGTAGTTCTGTATGTGATAGACTTTTAGTTTATGCCAGCAAAGGGTGGTATAAAATAGGACTGGTTGTATaGGATGGTTGGAGGGATCGT +
Preference number: 4 (lower is better)
Translates to: CSSVCDRLLVYASKGWYKIGLVV*DGWRDR
Trigger: ACGATCCCTCCAACCATCCCATACAACCAGTCCTAT...TTTATACCACCCTTTGCTGGCATAAACTAAAAGTCTATCACATACAGAACTACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp AGAACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCAGGTTTTGGCAAATTTaGTTTCACTGTCTGCTCCTT +
Preference number: 4 (lower is better)
Translates to: RTRFLLGLLLTMTRQPEVRFWQI*FHCLLL
Trigger: AAGGAGCAGACAGTGAAATCAAATTTGCCAAAACCT...GACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGTTCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGATCACCATAAACAGTTaGCTCAGGGAGCATCAGATT +
Preference number: 4 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKITINS*LREHQI
Trigger: AATCTGATGCTCCCTGAGTCAACTGTTTATGGTGAT...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATGCTTGTTTTGCTCCATaGTGTTATACTGAATTGGTG +
Preference number: 4 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDACFAP*CYTELV
Trigger: CACCAATTCAGTATAACATCATGGAGCAAAACAAGC...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAATTGAGGATTTCCAGTTaGTTCGCACTGAAACGTCAC +
Preference number: 4 (lower is better)
Translates to: KHRALTKQARNTSQQFLQLRISS*FALKRH
Trigger: GTGACGTTTCAGTGCGAAGCAACTGGAAATCCTCAA...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTGTTGGTGGGACATCTTaGGTTTTCACTGGATCTGAT +
Preference number: 4 (lower is better)
Translates to: QLVVKNIHLRGICICSCFVGGTS*VFTGSD
Trigger: ATCAGATCCAGTGAAAACGCAAGATGTCCCACCAAC...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp TGTAGTTCTGTATGTGATAGACTTTTAGTTTATGCCAGCAAAGGGTGGTATAAAGTTATACTGAATTGGTaGCACTTCCGGTTTCTGCTG +
Preference number: 4 (lower is better)
Translates to: CSSVCDRLLVYASKGWYKVILNW*HFRFLL
Trigger: CAGCAGAAACCGGAAGTGGCACCAATTCAGTATAAC...TTTATACCACCCTTTGCTGGCATAAACTAAAAGTCTATCACATACAGAACTACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGTCTAATTCATCCTGTTaGAAATACATCCGCGCAGGT +
Preference number: 4 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKSNSSC*KYIRAG
Trigger: ACCTGCGCGGATGTATTTGCAACAGGATGAATTAGA...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TGTAGTTCTGTATGTGATAGACTTTTAGTTTATGCCAGCAAAGGGTGGTATAAACTTTACAGTTCAGAGTaGCAGGTTCTCCTTTGGAGA +
Preference number: 4 (lower is better)
Translates to: CSSVCDRLLVYASKGWYKLYSSE*QVLLWR
Trigger: TCTCCAAAGGAGAACCTGCCACTCTGAACTGTAAAG...TTTATACCACCCTTTGCTGGCATAAACTAAAAGTCTATCACATACAGAACTACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGTCACTGCCAAATTACTaGGTCTCTTCACAAACGATG +
Preference number: 4 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKSLPNY*VSSQTM
Trigger: CATCGTTTGTGAAGAGACCCAGTAATTTGGCAGTGA...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTATGGCTGGCTCCAGATaGGCGGTAGAGAATTTTATA +
Preference number: 4 (lower is better)
Translates to: QLVVKNIHLRGICICSCFMAGSR*AVENFI
Trigger: TATAAAATTCTCTACCGCCCATCTGGAGCCAGCCAT...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp ACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCAAGTTGGTTGTTATAATTaGCTATACAATCAGCTGGGC +
Preference number: 4 (lower is better)
Translates to: TRFLLGLLLTMTRQPEVQVGCYN*LYNQLG
Trigger: GCCCAGCTGATTGTATAGCCAATTATAACAACCAAC...TTGGACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAATTCGGGTCTGCATTTTaGCAACTTCCATGTCAGCTT +
Preference number: 4 (lower is better)
Translates to: KHRALTKQARNTSQQFLQFGSAF*QLPCQL
Trigger: AAGCTGACATGGAAGTTGCCAAAATGCAGACCCGAA...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGCTCACATTTAAATTCTaGACTGTCATCCACAGTCAC +
Preference number: 4 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKLTFKF*TVIHSH
Trigger: GTGACTGTGGATGACAGTGCAGAATTTAAATGTGAG...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAATCTAATTCATCCTGTTaGAAATACATCCGCGCAGGT +
Preference number: 4 (lower is better)
Translates to: KHRALTKQARNTSQQFLQSNSSC*KYIRAG
Trigger: ACCTGCGCGGATGTATTTGCAACAGGATGAATTAGA...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGCATTTCCATCATTCTTaGATACAGTTACACTTCGGG +
Preference number: 4 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKHFHHS*IQLHFG
Trigger: CCCGAAGTGTAACTGTATCCAAGAATGATGGAAATG...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAACCCGTCCTTCAGATTTaGGCTATTGAAGGTTTTCAT +
Preference number: 4 (lower is better)
Translates to: KHRALTKQARNTSQQFLQPVLQI*AIEGFH
Trigger: ATGAAAACCTTCAATAGCCCAAATCTGAAGGACGGG...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR TCA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTGCTTGTTTTGCTCCATaGTGTTATACTGAATTGGTG +
Preference number: 4 (lower is better)
Translates to: QLVVKNIHLRGICICSCFACFAP*CYTELV
Trigger: CACCAATTCAGTATAACATCATGGAGCAAAACAAGC...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTTCCGTCCATGGACTATaGGTAAGAAAAATAAAGACC +
Preference number: 4 (lower is better)
Translates to: QLVVKNIHLRGICICSCFSVHGL*VRKIKT
Trigger: GGTCTTTATTTTTCTTACGCATAGTCCATGGACGGA...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR GCA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTAATCCCCCAAGTACTTaGATTTCTGCCATATTCCTT +
Preference number: 4 (lower is better)
Translates to: QLVVKNIHLRGICICSCFNPPST*ISAIFL
Trigger: AAGGAATATGGCAGAAATGCAAGTACTTGGGGGATT...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTCTACTCTTCCGTCCATaGACTATGCGTAAGAAAAAT +
Preference number: 4 (lower is better)
Translates to: QLVVKNIHLRGICICSCFLLFRP*TMRKKN
Trigger: ATTTTTCTTACGCATAGTCCATGGACGGAAGAGTAG...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAATTTTACAACGAAATGTaGCGGCTCTTGAACTGTCAA +
Preference number: 4 (lower is better)
Translates to: KHRALTKQARNTSQQFLQFYNEM*RLLNCQ
Trigger: TTGACAGTTCAAGAGCCGCCACATTTCGTTGTAAAA...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TGTAGTTCTGTATGTGATAGACTTTTAGTTTATGCCAGCAAAGGGTGGTATAAACATTTCCATCATTCTTaGATACAGTTACACTTCGGG +
Preference number: 4 (lower is better)
Translates to: CSSVCDRLLVYASKGWYKHFHHS*IQLHFG
Trigger: CCCGAAGTGTAACTGTATCCAAGAATGATGGAAATG...TTTATACCACCCTTTGCTGGCATAAACTAAAAGTCTATCACATACAGAACTACA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAAACTGGATCTGATATTTaGCTTGGATCACTAATTCCA +
Preference number: 4 (lower is better)
Translates to: KHRALTKQARNTSQQFLQTGSDI*LGSLIP
Trigger: TGGAATTAGTGATCCAAGCCAAATATCAGATCCAGT...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CCA 90 bp TGTAGTTCTGTATGTGATAGACTTTTAGTTTATGCCAGCAAAGGGTGGTATAAAACTGGATCTGATATTTaGCTTGGATCACTAATTCCA +
Preference number: 4 (lower is better)
Translates to: CSSVCDRLLVYASKGWYKTGSDI*LGSLIP
Trigger: TGGAATTAGTGATCCAAGCCAAATATCAGATCCAGT...TTTATACCACCCTTTGCTGGCATAAACTAAAAGTCTATCACATACAGAACTACA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 90 bp GGAGGACTCACGGGCTGCCGCCTCCTGTCTGGTGGGTGGGGCATGTaGCCGAGGTCCTCCGGACAATCCTGTAACATGGGCTGGAGCTCT +
Preference number: 5 (lower is better)
Translates to: GGLTGCRLLSGGWGM*PRSSGQSCNMGWSS
Trigger: AGAGCTCCAGCCCATGTTACAGGATTGTCCGGAGGACCTCGGGCACATGCCCCACCCACCAGACAGGAGGCGGCAGCCCGTGAGTCCTCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 90 bp GACTTCGATGTAAGCGCTCCACGTGGCCTCACCGCTGGGGGTCGATaGGGTGCAGGTGTACCGACCCGTGTCACCCAGCTTAGCGTAGCG +
Preference number: 5 (lower is better)
Translates to: DFDVSAPRGLTAGGR*GAGVPTRVTQLSVA
Trigger: CGCTACGCTAAGCTGGGTGACACGGGTCGGTACACCTGCACCGCATCGACCCCCAGCGGTGAGGCCACGTGGAGCGCTTACATCGAAGTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 90 bp GTTGCTATGTGGGGGAGGATGCGCCGGAGGAGGGGGCAGCAAGTCTaGCCAGTTCATGCCACCCTGCTTGGGTGCCTTTGGTGTCCGTGC +
Preference number: 5 (lower is better)
Translates to: VAMWGRMRRRRGQQV*PVHATLLGCLWCPC
Trigger: GCACGGACACCAAAGGCACCCAAGCAGGGTGGCATGAACTGGGCAGACTTGCTGCCCCCTCCTCCGGCGCATCCTCCCCCACATAGCAAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 90 bp CAAATTCCTGGACTTCGATGTAAGCGCTCCACGTGGCCTCACCGCTaGGGGTCGATGCGGTGCAGGTGTACCGACCCGTGTCACCCAGCT +
Preference number: 5 (lower is better)
Translates to: QIPGLRCKRSTWPHR*GSMRCRCTDPCHPA
Trigger: AGCTGGGTGACACGGGTCGGTACACCTGCACCGCATCGACCCCCAGCGGTGAGGCCACGTGGAGCGCTTACATCGAAGTCCAGGAATTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 90 bp GAACTGGAACCCCAAATTCCTGGACTTCGATGTAAGCGCTCCACGTaGCCTCACCGCTGGGGGTCGATGCGGTGCAGGTGTACCGACCCG +
Preference number: 5 (lower is better)
Translates to: ELEPQIPGLRCKRST*PHRWGSMRCRCTDP
Trigger: CGGGTCGGTACACCTGCACCGCATCGACCCCCAGCGGTGAGGCCACGTGGAGCGCTTACATCGAAGTCCAGGAATTTGGGGTTCCAGTTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 90 bp GTCTGCCCAGTTCATGCCACCCTGCTTGGGTGCCTTTGGTGTCCGTaGCCCTTTCTTGTGGCCTTGACTCCCGGATGTACTACTGCCCCG +
Preference number: 5 (lower is better)
Translates to: VCPVHATLLGCLWCP*PFLVALTPGCTTAP
Trigger: CGGGGCAGTAGTACATCCGGGAGTCAAGGCCACAAGAAAGGGGCACGGACACCAAAGGCACCCAAGCAGGGTGGCATGAACTGGGCAGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 90 bp GTGGTGGCACTGGAGGGGGTGGAAGATCATCTGCGTAGGCTTCCCTaGGCAGATGTCCTGGCTGGTGTTTCTGCTTCTTGGCGGGTCTGG +
Preference number: 5 (lower is better)
Translates to: VVALEGVEDHLRRLP*ADVLAGVSASWRVW
Trigger: CCAGACCCGCCAAGAAGCAGAAACACCAGCCAGGACATCTGCGCAGGGAAGCCTACGCAGATGATCTTCCACCCCCTCCAGTGCCACCAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 90 bp GTCATTGTGGTTGTTGCCTGTGTTGGGCCACGTGTCTGCCAGCCATaGCTGCGTGGCAGGTTCACTAATGTTGAGGAGTCCCGGCCTCCC +
Preference number: 5 (lower is better)
Translates to: VIVVVACVGPRVCQP*LRGRFTNVEESRPP
Trigger: GGGAGGCCGGGACTCCTCAACATTAGTGAACCTGCCACGCAGCCATGGCTGGCAGACACGTGGCCCAACACAGGCAACAACCACAATGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 90 bp CTGTTGCCATTGCCGGCCGTGCAGCAGTTGATGGAGCAGTCATTGTaGTTGTTGCCTGTGTTGGGCCACGTGTCTGCCAGCCATGGCTGC +
Preference number: 5 (lower is better)
Translates to: LLPLPAVQQLMEQSL*LLPVLGHVSASHGC
Trigger: GCAGCCATGGCTGGCAGACACGTGGCCCAACACAGGCAACAACCACAATGACTGCTCCATCAACTGCTGCACGGCCGGCAATGGCAACAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 90 bp AACAGCACTCATGTTGCTGTCTGTGGACACAGGACTCGTGGGCCTTaGGCACTGAGAGGCATGGAAGTGGCGGCGGCCAGCAGCATCTTG +
Preference number: 5 (lower is better)
Translates to: NSTHVAVCGHRTRGP*ALRGMEVAAASSIL
Trigger: CAAGATGCTGCTGGCCGCCGCCACTTCCATGCCTCTCAGTGCCCAAGGCCCACGAGTCCTGTGTCCACAGACAGCAACATGAGTGCTGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 90 bp GACGGGAGCCTGTGTAGCCCAGCGAATTGTCATCGTTATCAGAGGTaGGGGCTGGCGTTCCGTTGTCGTTCCCCCTCTCTAGGTCCTCAG +
Preference number: 5 (lower is better)
Translates to: DGSLCSPANCHRYQR*GLAFRCRSPSLGPQ
Trigger: CTGAGGACCTAGAGAGGGGGAACGACAACGGAACGCCAGCCCCCACCTCTGATAACGATGACAATTCGCTGGGCTACACAGGCTCCCGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000232205.2
CDS CCA 90 bp CAGCTGTGCCTTGGACTGGACAGTGGGCGATTTTATAGCAGGTGGTaGCACTGGAGGGGGTGGAAGATCATCTGCGTAGGCTTCCCTGCG +
Preference number: 5 (lower is better)
Translates to: QLCLGLDSGRFYSRW*HWRGWKIICVGFPA
Trigger: CGCAGGGAAGCCTACGCAGATGATCTTCCACCCCCTCCAGTGCCACCACCTGCTATAAAATCGCCCACTGTCCAGTCCAAGGCACAGCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS TCA 90 bp ACTGACACTGGAGCGCCCACTGGAAATGTTGTCCTCTTCCGAGGCTaGGCCCCAGCCATTGATCATGGACCCAGTGACGGAGCTCTCAAG +
Preference number: 5 (lower is better)
Translates to: TDTGAPTGNVVLFRG*APAIDHGPSDGALK
Trigger: CTTGAGAGCTCCGTCACTGGGTCCATGATCAATGGCTGGGGCTCAGCCTCGGAAGAGGACAACATTTCCAGTGGGCGCTCCAGTGTCAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 90 bp GATGCTGAAGACCATGAGGATAATCCAACAGGCTGCCCCAATGCCTaGAATGAACGCCGGCTGCCTCACCACGTCGGAGATCTGCTGAGC +
Preference number: 5 (lower is better)
Translates to: DAEDHEDNPTGCPNA*NERRLPHHVGDLLS
Trigger: GCTCAGCAGATCTCCGACGTGGTGAGGCAGCCGGCGTTCATTGCAGGCATTGGGGCAGCCTGTTGGATTATCCTCATGGTCTTCAGCATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 90 bp TCTACGGACATGTTGTATTCTTCACTGTTGCTATGTGGGGGAGGATaGGCCGGAGGAGGGGGCAGCAAGTCTGCCCAGTTCATGCCACCC +
Preference number: 5 (lower is better)
Translates to: STDMLYSSLLLCGGG*AGGGGSKSAQFMPP
Trigger: GGGTGGCATGAACTGGGCAGACTTGCTGCCCCCTCCTCCGGCGCATCCTCCCCCACATAGCAACAGTGAAGAATACAACATGTCCGTAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 90 bp TTGCATTTGGCGGCGAGCCACTTTCAGGCCCGCATACTCCGCAGCTaGAGCAACTGCCTGGGCAAAATCAGCGTCAGTGAAAAAGGAGCC +
Preference number: 5 (lower is better)
Translates to: LHLAASHFQARILRS*SNCLGKISVSEKGA
Trigger: GGCTCCTTTTTCACTGACGCTGATTTTGCCCAGGCAGTTGCTGCAGCTGCGGAGTATGCGGGCCTGAAAGTGGCTCGCCGCCAAATGCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 90 bp GCTTCTTGGCGGGTCTGGCTTTCTGGATCACAACAGCACTCATGTTaGTGTCTGTGGACACAGGACTCGTGGGCCTTGGGCACTGAGAGG +
Preference number: 5 (lower is better)
Translates to: ASWRVWLSGSQQHSC*CLWTQDSWALGTER
Trigger: CCTCTCAGTGCCCAAGGCCCACGAGTCCTGTGTCCACAGACAGCAACATGAGTGCTGTTGTGATCCAGAAAGCCAGACCCGCCAAGAAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 90 bp AGGGGGTGGAAGATCATCTGCGTAGGCTTCCCTGCGCAGATGTCCTaGCTGGTGTTTCTGCTTCTTGGCGGGTCTGGCTTTCTGGATCAC +
Preference number: 5 (lower is better)
Translates to: RGWKIICVGFPAQMS*LVFLLLGGSGFLDH
Trigger: GTGATCCAGAAAGCCAGACCCGCCAAGAAGCAGAAACACCAGCCAGGACATCTGCGCAGGGAAGCCTACGCAGATGATCTTCCACCCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 90 bp TGCCTTGGACTGGACAGTGGGCGATTTTATAGCAGGTGGTGGCACTaGAGGGGGTGGAAGATCATCTGCGTAGGCTTCCCTGCGCAGATG +
Preference number: 5 (lower is better)
Translates to: CLGLDSGRFYSRWWH*RGWKIICVGFPAQM
Trigger: CATCTGCGCAGGGAAGCCTACGCAGATGATCTTCCACCCCCTCCAGTGCCACCACCTGCTATAAAATCGCCCACTGTCCAGTCCAAGGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 90 bp CTCCAGCTGTGCCTTGGACTGGACAGTGGGCGATTTTATAGCAGGTaGTGGCACTGGAGGGGGTGGAAGATCATCTGCGTAGGCTTCCCT +
Preference number: 5 (lower is better)
Translates to: LQLCLGLDSGRFYSR*WHWRGWKIICVGFP
Trigger: AGGGAAGCCTACGCAGATGATCTTCCACCCCCTCCAGTGCCACCACCTGCTATAAAATCGCCCACTGTCCAGTCCAAGGCACAGCTGGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS TCA 90 bp GTGGCCACACAGCTGAGGATTAAAGTGCCATCCACTGCTACAGTCTaGTTCACAGGACCTTGCCGAATGACTGGGGGAGGCCGGTCTGCA +
Preference number: 5 (lower is better)
Translates to: VATQLRIKVPSTATV*FTGPCRMTGGGRSA
Trigger: TGCAGACCGGCCTCCCCCAGTCATTCGGCAAGGTCCTGTGAATCAGACTGTAGCAGTGGATGGCACTTTAATCCTCAGCTGTGTGGCCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS TCA 90 bp TTGTCAGGTTGCTGTCGCTGTTGCCATTGCCGGCCGTGCAGCAGTTaGTGGAGCAGTCATTGTGGTTGTTGCCTGTGTTGGGCCACGTGT +
Preference number: 5 (lower is better)
Translates to: LSGCCRCCHCRPCSS*WSSHCGCCLCWATC
Trigger: ACACGTGGCCCAACACAGGCAACAACCACAATGACTGCTCCATCAACTGCTGCACGGCCGGCAATGGCAACAGCGACAGCAACCTGACAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 90 bp GATGGAGCAGTCATTGTGGTTGTTGCCTGTGTTGGGCCACGTGTCTaGCAGCCATGGCTGCGTGGCAGGTTCACTAATGTTGAGGAGTCC +
Preference number: 5 (lower is better)
Translates to: DGAVIVVVACVGPRV*QPWLRGRFTNVEES
Trigger: GGACTCCTCAACATTAGTGAACCTGCCACGCAGCCATGGCTGGCAGACACGTGGCCCAACACAGGCAACAACCACAATGACTGCTCCATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 90 bp GGGTCTGCTCCAGCCCACGTAACAACAGCCTTCGGGTCTGCATTTTaGCAACTTCCATGTCAGCTTCGTCCTCCTCCTCTTCTGGGGCAT +
Preference number: 5 (lower is better)
Translates to: GSAPAHVTTAFGSAF*QLPCQLRPPPLLGH
Trigger: ATGCCCCAGAAGAGGAGGAGGACGAAGCTGACATGGAAGTTGCCAAAATGCAGACCCGAAGGCTGTTGTTACGTGGGCTGGAGCAGACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 90 bp CGGGTCTGGCTTTCTGGATCACAACAGCACTCATGTTGCTGTCTGTaGACACAGGACTCGTGGGCCTTGGGCACTGAGAGGCATGGAAGT +
Preference number: 5 (lower is better)
Translates to: RVWLSGSQQHSCCCL*TQDSWALGTERHGS
Trigger: ACTTCCATGCCTCTCAGTGCCCAAGGCCCACGAGTCCTGTGTCCACAGACAGCAACATGAGTGCTGTTGTGATCCAGAAAGCCAGACCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 90 bp ACAGTACGGAAGAATATCCTCTTGGCCGAGGTGCGTCTTTGCTGGTaGAAGGTCTCGCTTGGCTGCCTTTGTTCCTCGGCCTTTCCCGTC +
Preference number: 5 (lower is better)
Translates to: TVRKNILLAEVRLCW*KVSLGCLCSSAFPV
Trigger: GACGGGAAAGGCCGAGGAACAAAGGCAGCCAAGCGAGACCTTCCACCAGCAAAGACGCACCTCGGCCAAGAGGATATTCTTCCGTACTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 90 bp GATGCTGGGGTCTGCTCCAGCCCACGTAACAACAGCCTTCGGGTCTaGATTTTGGCAACTTCCATGTCAGCTTCGTCCTCCTCCTCTTCT +
Preference number: 5 (lower is better)
Translates to: DAGVCSSPRNNSLRV*ILATSMSASSSSSS
Trigger: AGAAGAGGAGGAGGACGAAGCTGACATGGAAGTTGCCAAAATGCAGACCCGAAGGCTGTTGTTACGTGGGCTGGAGCAGACCCCAGCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 90 bp TATAGACGCGAGTTTTGGCACCATGACAGGCCGTACCTCCAGCTGTaGCTTGGACTGGACAGTGGGCGATTTTATAGCAGGTGGTGGCAC +
Preference number: 5 (lower is better)
Translates to: YRREFWHHDRPYLQL*LGLDSGRFYSRWWH
Trigger: GTGCCACCACCTGCTATAAAATCGCCCACTGTCCAGTCCAAGGCACAGCTGGAGGTACGGCCTGTCATGGTGCCAAAACTCGCGTCTATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 90 bp TCTACAGTACGGAAGAATATCCTCTTGGCCGAGGTGCGTCTTTGCTaGTGGAAGGTCTCGCTTGGCTGCCTTTGTTCCTCGGCCTTTCCC +
Preference number: 5 (lower is better)
Translates to: STVRKNILLAEVRLC*WKVSLGCLCSSAFP
Trigger: GGGAAAGGCCGAGGAACAAAGGCAGCCAAGCGAGACCTTCCACCAGCAAAGACGCACCTCGGCCAAGAGGATATTCTTCCGTACTGTAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS TCA 90 bp ATCTTCCTGACGAAGACGGGAGCGGTTCTTTTCACCTCTCCACCTTaGCCCAGCTCTCATTCTGCCGGAGACACCCACAGGGGAAGTTAT +
Preference number: 5 (lower is better)
Translates to: IFLTKTGAVLFTSPP*PSSHSAGDTHRGSY
Trigger: ATAACTTCCCCTGTGGGTGTCTCCGGCAGAATGAGAGCTGGGTCAAGGTGGAGAGGTGAAAAGAACCGCTCCCGTCTTCGTCAGGAAGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231580.2
CDS GCA 90 bp AGGTCTACAGTACGGAAGAATATCCTCTTGGCCGAGGTGCGTCTTTaGTGGTGGAAGGTCTCGCTTGGCTGCCTTTGTTCCTCGGCCTTT +
Preference number: 5 (lower is better)
Translates to: RSTVRKNILLAEVRL*WWKVSLGCLCSSAF
Trigger: AAAGGCCGAGGAACAAAGGCAGCCAAGCGAGACCTTCCACCAGCAAAGACGCACCTCGGCCAAGAGGATATTCTTCCGTACTGTAGACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTTGGGGTCGGTGGGTCTaGGGGGTTGAACTGGAACCC +
Preference number: 5 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVWGRWV*GVELEP
Trigger: GGGTTCCAGTTCAACCCCCAAGACCCACCGACCCCA...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS TCA 90 bp TCCTCCACAGAATTGTGGGTGCTGGACTGCCTGTGGCCACACAGCTaGGGATTAAAGTGCCATCCACTGCTACAGTCTGATTCACAGGAC +
Preference number: 5 (lower is better)
Translates to: SSTELWVLDCLWPHS*GLKCHPLLQSDSQD
Trigger: GTCCTGTGAATCAGACTGTAGCAGTGGATGGCACTTTAATCCTCAGCTGTGTGGCCACAGGCAGTCCAGCACCCACAATTCTGTGGAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS TCA 90 bp CTGCAGCACGCCACTCTCCAGCTGTTTGATCCGAGAATCTTGGGTTaGAACAAGGACTCCATCCTTCCTCCACAGAATTGTGGGTGCTGG +
Preference number: 5 (lower is better)
Translates to: LQHATLQLFDPRILG*NKDSILPPQNCGCW
Trigger: CCAGCACCCACAATTCTGTGGAGGAAGGATGGAGTCCTTGTTTCAACCCAAGATTCTCGGATCAAACAGCTGGAGAGTGGCGTGCTGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS TCA 90 bp GTTCCTGTGCCTCTCTGGGGTCACTTGGATTTGTTCGCAGGTCAGTaGCTTGTCTTCCATCCAGAGCTTCTCTCCCCTTGTAACTGCCTC +
Preference number: 5 (lower is better)
Translates to: VPVPLWGHLDLFAGQ*LVFHPELLSPCNCL
Trigger: GAGGCAGTTACAAGGGGAGAGAAGCTCTGGATGGAAGACAAGTCACTGACCTGCGAACAAATCCAAGTGACCCCAGAGAGGCACAGGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 90 bp AGATGTAGACCCCTTCGTCGGGCCTACTCTTCCGTCCATGGACTATaGGTAAGAAAAATAAAGACCCGCTTGGCAGCAGCATCCGGTGTG +
Preference number: 5 (lower is better)
Translates to: RCRPLRRAYSSVHGL*VRKIKTRLAAASGV
Trigger: CACACCGGATGCTGCTGCCAAGCGGGTCTTTATTTTTCTTACGCATAGTCCATGGACGGAAGAGTAGGCCCGACGAAGGGGTCTACATCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023600.8
ENSMUST00000231580.2
ENSMUST00000232205.2
CDS GCA 90 bp GGGTTGTGCAGATGTAAGACAACATTCCCCAGTTCTCTTTGGACCTaGTTGTGGTCCACCCCTTGGCTGGTTGGTGGGACATCTTGCGTT +
Preference number: 5 (lower is better)
Translates to: GLCRCKTTFPSSLWT*LWSTPWLVGGTSCV
Trigger: AACGCAAGATGTCCCACCAACCAGCCAAGGGGTGGACCACAAGCAGGTCCAAAGAGAACTGGGGAATGTTGTCTTACATCTGCACAACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 90 bp GGGAGCGGTTCTTTTCACCTCTCCACCTTGACCCAGCTCTCATTCTaGCGGAGACACCCACAGGGGAAGTTATTTCAGCCATTGAGAAGA +
Preference number: 5 (lower is better)
Translates to: GSGSFHLSTLTQLSF*RRHPQGKLFQPLRR
Trigger: TCTTCTCAATGGCTGAAATAACTTCCCCTGTGGGTGTCTCCGGCAGAATGAGAGCTGGGTCAAGGTGGAGAGGTGAAAAGAACCGCTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231580.2
CDS GCA 90 bp CAGGTTCTCCTTTGGAGACGATCAGGTCTGAAGGGTGTTCAACAATaGGGGGTGGAAAATCTTCCTGACGAAGACGGGAGCCTGTGTAGC +
Preference number: 5 (lower is better)
Translates to: QVLLWRRSGLKGVQQ*GVENLPDEDGSLCS
Trigger: GCTACACAGGCTCCCGTCTTCGTCAGGAAGATTTTCCACCCCGCATTGTTGAACACCCTTCAGACCTGATCGTCTCCAAAGGAGAACCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000232205.2
CDS CCA 90 bp GCCATCCACTGCTACAGTCTGATTCACAGGACCTTGCCGAATGACTaGGGGAGGCCGGTCTGCAATCACATCAGTAACTTCCAAATAGGC +
Preference number: 5 (lower is better)
Translates to: AIHCYSLIHRTLPND*GRPVCNHISNFQIG
Trigger: GCCTATTTGGAAGTTACTGATGTGATTGCAGACCGGCCTCCCCCAGTCATTCGGCAAGGTCCTGTGAATCAGACTGTAGCAGTGGATGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 90 bp ATGGTCGGGTTGTGCAGATGTAAGACAACATTCCCCAGTTCTCTTTaGACCTGCTTGTGGTCCACCCCTTGGCTGGTTGGTGGGACATCT +
Preference number: 5 (lower is better)
Translates to: MVGLCRCKTTFPSSL*TCLWSTPWLVGGTS
Trigger: AGATGTCCCACCAACCAGCCAAGGGGTGGACCACAAGCAGGTCCAAAGAGAACTGGGGAATGTTGTCTTACATCTGCACAACCCGACCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTGAGAGTGGCCGTGGATaGGTGGCTGTAGGACACAGC +
Preference number: 5 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVESGRG*VAVGHS
Trigger: GCTGTGTCCTACAGCCACCAATCCACGGCCACTCTC...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS TCA 90 bp CCCTTTCTTGTGGCCTTGACTCCCGGATGTACTACTGCCCCGATCTaGGCTGTTATAAGACCCTCCTGTGTTCTGGTCATAGGACTGGTT +
Preference number: 5 (lower is better)
Translates to: PFLVALTPGCTTAPI*AVIRPSCVLVIGLV
Trigger: AACCAGTCCTATGACCAGAACACAGGAGGGTCTTATAACAGCTCAGATCGGGGCAGTAGTACATCCGGGAGTCAAGGCCACAAGAAAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 90 bp CAGGTTCTCCTTTGGAGACGATCAGGTCTGAAGGGTGTTCAACAATaGGGGGTGGAAAATCTTCCTGACGAAGACGGGAGCCTGAACAGA +
Preference number: 5 (lower is better)
Translates to: QVLLWRRSGLKGVQQ*GVENLPDEDGSLNR
Trigger: TCTGTTCAGGCTCCCGTCTTCGTCAGGAAGATTTTCCACCCCGCATTGTTGAACACCCTTCAGACCTGATCGTCTCCAAAGGAGAACCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023600.8
CDS GCA 90 bp CTTGATCATAGCTTTCATCTACGGACATGTTGTATTCTTCACTGTTaGTATGTGGGGGAGGATGCGCCGGAGGAGGGGGCAGCAAGTCTG +
Preference number: 5 (lower is better)
Translates to: LDHSFHLRTCCILHC*YVGEDAPEEGAASL
Trigger: CAGACTTGCTGCCCCCTCCTCCGGCGCATCCTCCCCCACATAGCAACAGTGAAGAATACAACATGTCCGTAGATGAAAGCTATGATCAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 90 bp TCTTCCCAAGGCAACCACCTGGTCCCGAGGTTTTACAACGAAATGTaGCGGCTCTTGAACTGTCAAAGTAGCGGAAGCTTCAGCTTTCCC +
Preference number: 5 (lower is better)
Translates to: SSQGNHLVPRFYNEM*RLLNCQSSGSFSFP
Trigger: GGGAAAGCTGAAGCTTCCGCTACTTTGACAGTTCAAGAGCCGCCACATTTCGTTGTAAAACCTCGGGACCAGGTGGTTGCCTTGGGAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 90 bp CGGATCTGCAGCACGCCACTCTCCAGCTGTTTGATCCGAGAATCTTaGGTTGAAACAAGGACTCCATCCTTCCTCCACAGAATTGTGGGT +
Preference number: 5 (lower is better)
Translates to: RICSTPLSSCLIRES*VETRTPSFLHRIVG
Trigger: ACCCACAATTCTGTGGAGGAAGGATGGAGTCCTTGTTTCAACCCAAGATTCTCGGATCAAACAGCTGGAGAGTGGCGTGCTGCAGATCCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTCTGATTCACAGGACCTaGCCGAATGACTGGGGGAGG +
Preference number: 5 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVLIHRT*PNDWGR
Trigger: CCTCCCCCAGTCATTCGGCAAGGTCCTGTGAATCAG...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCTGGGGTCGGTGGGTCTaGGGGGTTGAACTGGAACCC +
Preference number: 5 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLWGRWV*GVELEP
Trigger: GGGTTCCAGTTCAACCCCCAAGACCCACCGACCCCA...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp GGGGGAGGTTCATTAAGGGTTAGGCAATCAATCAGCAACACTAAAAACCCAAGACTGTCGCTGTTGCCATaGCCGGCCGTGCAGCAGTTG +
Preference number: 5 (lower is better)
Translates to: GGGSLRVRQSISNTKNPRLSLLP*PAVQQL
Trigger: CAACTGCTGCACGGCCGGCAATGGCAACAGCGACAG...TCTTGGGTTTTTAGTGTTGCTGATTGATTGCCTAACCCTTAATGAACCTCCCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTTCGGCCCACATTTGCTaGCTCTCTTTGTCGGCTCCC +
Preference number: 5 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVSAHIC*LSLSAP
Trigger: GGGAGCCGACAAAGAGAGCAAGCAAATGTGGGCCGA...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 90 bp CAGGTTCTCCTTTGGAGACGATCAGGTCTGAAGGGTGTTCAACAATaGGGGGTGGAAAATCTTCCTGACGAAGACGGGAGCGGTTCTTTT +
Preference number: 5 (lower is better)
Translates to: QVLLWRRSGLKGVQQ*GVENLPDEDGSGSF
Trigger: AAAAGAACCGCTCCCGTCTTCGTCAGGAAGATTTTCCACCCCGCATTGTTGAACACCCTTCAGACCTGATCGTCTCCAAAGGAGAACCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000231580.2
CDS-3UTR CAA 90 bp GGGGGAGGTTCATTAAGGGTTAGGCAATCAATCAGCAACACTAAAAACCCAAGACTTGTGGTCCACCCCTaGGCTGGTTGGTGGGACATC +
Preference number: 5 (lower is better)
Translates to: GGGSLRVRQSISNTKNPRLVVHP*AGWWDI
Trigger: GATGTCCCACCAACCAGCCAAGGGGTGGACCACAAG...TCTTGGGTTTTTAGTGTTGCTGATTGATTGCCTAACCCTTAATGAACCTCCCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCGAGAGTGGCCGTGGATaGGTGGCTGTAGGACACAGC +
Preference number: 5 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLESGRG*VAVGHS
Trigger: GCTGTGTCCTACAGCCACCAATCCACGGCCACTCTC...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS TCA 90 bp GCAACCACCTGGTCCCGAGGTTTTACAACGAAATGTGGCGGCTCTTaGACTGTCAAAGTAGCGGAAGCTTCAGCTTTCCCGACCATATTT +
Preference number: 5 (lower is better)
Translates to: ATTWSRGFTTKCGGS*TVKVAEASAFPTIF
Trigger: AAATATGGTCGGGAAAGCTGAAGCTTCCGCTACTTTGACAGTTCAAGAGCCGCCACATTTCGTTGTAAAACCTCGGGACCAGGTGGTTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp TATAGAAACCTACAGTCACAGAGCATCACTTGGCAATTCCGAGTTGGAATTCCTTGGTTGTTGCCTGTGTaGGGCCACGTGTCTGCCAGC +
Preference number: 5 (lower is better)
Translates to: YRNLQSQSITWQFRVGIPWLLPV*GHVSAS
Trigger: GCTGGCAGACACGTGGCCCAACACAGGCAACAACCA...AGGAATTCCAACTCGGAATTGCCAAGTGATGCTCTGTGACTGTAGGTTTCTATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCTTCATGCCACCCTGCTaGGGTGCCTTTGGTGTCCGT +
Preference number: 5 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLFMPPC*GAFGVR
Trigger: ACGGACACCAAAGGCACCCAAGCAGGGTGGCATGAA...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp TATAGAAACCTACAGTCACAGAGCATCACTTGGCAATTCCGAGTTGGAATTCCTGCTGAGCCCCAGCCATaGATCATGGACCCAGTGACG +
Preference number: 5 (lower is better)
Translates to: YRNLQSQSITWQFRVGIPAEPQP*IMDPVT
Trigger: CGTCACTGGGTCCATGATCAATGGCTGGGGCTCAGC...AGGAATTCCAACTCGGAATTGCCAAGTGATGCTCTGTGACTGTAGGTTTCTATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp GGGGGAGGTTCATTAAGGGTTAGGCAATCAATCAGCAACACTAAAAACCCAAGACGCCCACTGGAAATGTaGTCCTCTTCCGAGGCTGAG +
Preference number: 5 (lower is better)
Translates to: GGGSLRVRQSISNTKNPRRPLEM*SSSEAE
Trigger: CTCAGCCTCGGAAGAGGACAACATTTCCAGTGGGCG...TCTTGGGTTTTTAGTGTTGCTGATTGATTGCCTAACCCTTAATGAACCTCCCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp ACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCAAGGGGCTGGCGTTCCGTaGTCGTTCCCCCTCTCTAGG +
Preference number: 5 (lower is better)
Translates to: TRFLLGLLLTMTRQPEVQGAGVP*SFPLSR
Trigger: CCTAGAGAGGGGGAACGACAACGGAACGCCAGCCCC...TTGGACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000232205.2
CDS TCA 90 bp CACCCCTTGGCTGGTTGGTGGGACATCTTGCGTTTTCACTGGATCTaGTATTTGGCTTGGATCACTAATTCCATAGGCATTTGCTGCCCT +
Preference number: 5 (lower is better)
Translates to: HPLAGWWDILRFHWI*YLAWITNSIGICCP
Trigger: AGGGCAGCAAATGCCTATGGAATTAGTGATCCAAGCCAAATATCAGATCCAGTGAAAACGCAAGATGTCCCACCAACCAGCCAAGGGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 90 bp TCCATTTTGTGTGTCTTCAGGAGGCGGTTGCCAAGTGACCAGGATTaGAGTCCCATTTCCATCATTCTTGGATACAGTTACACTTCGGGG +
Preference number: 5 (lower is better)
Translates to: SILCVFRRRLPSDQD*SPISIILGYSYTSG
Trigger: CCCCGAAGTGTAACTGTATCCAAGAATGATGGAAATGGGACTGCAATCCTGGTCACTTGGCAACCGCCTCCTGAAGACACACAAAATGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 90 bp CCAAGTACTTGCATTTCTGCCATATTCCTTCGGCCCACATTTGCTTaGTCTCTTTGTCGGCTCCCTGATCCTCTTGATGACATAGAGCTG +
Preference number: 5 (lower is better)
Translates to: PSTCISAIFLRPTFA*SLCRLPDPLDDIEL
Trigger: CAGCTCTATGTCATCAAGAGGATCAGGGAGCCGACAAAGAGAGCAAGCAAATGTGGGCCGAAGGAATATGGCAGAAATGCAAGTACTTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTCCACTCTCCAGCTGTTaGATCCGAGAATCTTGGGTT +
Preference number: 5 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVPLSSC*IRESWV
Trigger: AACCCAAGATTCTCGGATCAAACAGCTGGAGAGTGG...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp GGGGGAGGTTCATTAAGGGTTAGGCAATCAATCAGCAACACTAAAAACCCAAGACAGTCATTGTGGTTGTaGCCTGTGTTGGGCCACGTG +
Preference number: 5 (lower is better)
Translates to: GGGSLRVRQSISNTKNPRQSLWL*PVLGHV
Trigger: CACGTGGCCCAACACAGGCAACAACCACAATGACTG...TCTTGGGTTTTTAGTGTTGCTGATTGATTGCCTAACCCTTAATGAACCTCCCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp GGGGGAGGTTCATTAAGGGTTAGGCAATCAATCAGCAACACTAAAAACCCAAGAGAGCAGTCATTGTGGTaGTTGCCTGTGTTGGGCCAC +
Preference number: 5 (lower is better)
Translates to: GGGSLRVRQSISNTKNPREQSLW*LPVLGH
Trigger: GTGGCCCAACACAGGCAACAACCACAATGACTGCTC...TCTTGGGTTTTTAGTGTTGCTGATTGATTGCCTAACCCTTAATGAACCTCCCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp AGAACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCAGGTTGCTGTCGCTGTaGCCATTGCCGGCCGTGCAG +
Preference number: 5 (lower is better)
Translates to: RTRFLLGLLLTMTRQPEVRLLSL*PLPAVQ
Trigger: CTGCACGGCCGGCAATGGCAACAGCGACAGCAACCT...GACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTGGTTGTATGGGATGGTaGGAGGGATCGTGTCATTTG +
Preference number: 5 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVGCMGW*EGSCHL
Trigger: CAAATGACACGATCCCTCCAACCATCCCATACAACC...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 90 bp ATCTTTGTTCAGCTTGTTTTGCTCCATGATGTTATACTGAATTGGTaGCACTTCCGGTTTCTGCTGTCCCGGAGGCTTCCAGTGCTTCTC +
Preference number: 5 (lower is better)
Translates to: IFVQLVLLHDVILNW*HFRFLLSRRLPVLL
Trigger: GAGAAGCACTGGAAGCCTCCGGGACAGCAGAAACCGGAAGTGGCACCAATTCAGTATAACATCATGGAGCAAAACAAGCTGAACAAAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 90 bp AGACCCTCCTGTGTTCTGGTCATAGGACTGGTTGTATGGGATGGTTaGAGGGATCGTGTCATTTGCCCGATAATCTTTGTTCAGCTTGTT +
Preference number: 5 (lower is better)
Translates to: RPSCVLVIGLVVWDG*RDRVICPIIFVQLV
Trigger: AACAAGCTGAACAAAGATTATCGGGCAAATGACACGATCCCTCCAACCATCCCATACAACCAGTCCTATGACCAGAACACAGGAGGGTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp GGGGGAGGTTCATTAAGGGTTAGGCAATCAATCAGCAACACTAAAAACCCAAGAGTGGCAGGTTCTCCTTaGGAGACGATCAGGTCTGAA +
Preference number: 5 (lower is better)
Translates to: GGGSLRVRQSISNTKNPRVAGSP*ETIRSE
Trigger: TTCAGACCTGATCGTCTCCAAAGGAGAACCTGCCAC...TCTTGGGTTTTTAGTGTTGCTGATTGATTGCCTAACCCTTAATGAACCTCCCCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGACCTCCAGCGATGCGTaGTGGCTCACAGCCTCTCCG +
Preference number: 5 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKTSSDA*WLTASP
Trigger: CGGAGAGGCTGTGAGCCACAACGCATCGCTGGAGGT...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCATTCCCCAGTTCTCTTaGGACCTGCTTGTGGTCCAC +
Preference number: 5 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLIPQFS*DLLVVH
Trigger: GTGGACCACAAGCAGGTCCAAAGAGAACTGGGGAAT...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp TATAGAAACCTACAGTCACAGAGCATCACTTGGCAATTCCGAGTTGGAATTCCTCAGTCATTGTGGTTGTaGCCTGTGTTGGGCCACGTG +
Preference number: 5 (lower is better)
Translates to: YRNLQSQSITWQFRVGIPQSLWL*PVLGHV
Trigger: CACGTGGCCCAACACAGGCAACAACCACAATGACTG...AGGAATTCCAACTCGGAATTGCCAAGTGATGCTCTGTGACTGTAGGTTTCTATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTTTGATGGAGCAGTCATaGTGGTTGTTGCCTGTGTTG +
Preference number: 5 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVLMEQS*WLLPVL
Trigger: CAACACAGGCAACAACCACAATGACTGCTCCATCAA...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp AGAACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCCGGCCGTGCAGCAGTaGATGGAGCAGTCATTGTGG +
Preference number: 5 (lower is better)
Translates to: RTRFLLGLLLTMTRQPEVPAVQQ*MEQSLW
Trigger: CCACAATGACTGCTCCATCAACTGCTGCACGGCCGG...GACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGTTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGCTGTCGCTGTTGCCATaGCCGGCCGTGCAGCAGTTG +
Preference number: 5 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKLSLLP*PAVQQL
Trigger: CAACTGCTGCACGGCCGGCAATGGCAACAGCGACAG...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGAGGTTGCTGTCGCTGTaGCCATTGCCGGCCGTGCAG +
Preference number: 5 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKRLLSL*PLPAVQ
Trigger: CTGCACGGCCGGCAATGGCAACAGCGACAGCAACCT...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATCCTGCTTGGGTGCCTTaGGTGTCCGTGCCCCTTTCT +
Preference number: 5 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDPAWVP*VSVPLS
Trigger: AGAAAGGGGCACGGACACCAAAGGCACCCAAGCAGG...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTTTGTATTCTTCACTGTaGCTATGTGGGGGAGGATGC +
Preference number: 5 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVLYSSL*LCGGGC
Trigger: GCATCCTCCCCCACATAGCAACAGTGAAGAATACAA...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp ACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCAAACCTCCAGCTGTGCCTaGGACTGGACAGTGGGCGAT +
Preference number: 5 (lower is better)
Translates to: TRFLLGLLLTMTRQPEVQTSSCA*DWTVGD
Trigger: ATCGCCCACTGTCCAGTCCAAGGCACAGCTGGAGGT...TTGGACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATGGTGGAAGGTCTCGCTaGGCTGCCTTTGTTCCTCGG +
Preference number: 5 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDGGRSR*AAFVPR
Trigger: CCGAGGAACAAAGGCAGCCAAGCGAGACCTTCCACC...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGGGCCGAGGTGCGTCTTaGCTGGTGGAAGGTCTCGCT +
Preference number: 5 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKGRGAS*LVEGLA
Trigger: AGCGAGACCTTCCACCAGCAAAGACGCACCTCGGCC...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS TCA 90 bp GGAAGCTTCAGCTTTCCCGACCATATTTTCTGCCACACAAGTGTATaGTCCCATGTCGCCAGCAGTCACCTTCCGAATTTTCAAAGTATG +
Preference number: 5 (lower is better)
Translates to: GSFSFPDHIFCHTSV*SHVASSHLPNFQSM
Trigger: CATACTTTGAAAATTCGGAAGGTGACTGCTGGCGACATGGGATCATACACTTGTGTGGCAGAAAATATGGTCGGGAAAGCTGAAGCTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 90 bp TATAAGACCCTCCTGTGTTCTGGTCATAGGACTGGTTGTATGGGATaGTTGGAGGGATCGTGTCATTTGCCCGATAATCTTTGTTCAGCT +
Preference number: 5 (lower is better)
Translates to: YKTLLCSGHRTGCMG*LEGSCHLPDNLCSA
Trigger: AGCTGAACAAAGATTATCGGGCAAATGACACGATCCCTCCAACCATCCCATACAACCAGTCCTATGACCAGAACACAGGAGGGTCTTATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 90 bp GCTGTTATAAGACCCTCCTGTGTTCTGGTCATAGGACTGGTTGTATaGGATGGTTGGAGGGATCGTGTCATTTGCCCGATAATCTTTGTT +
Preference number: 5 (lower is better)
Translates to: AVIRPSCVLVIGLVV*DGWRDRVICPIIFV
Trigger: AACAAAGATTATCGGGCAAATGACACGATCCCTCCAACCATCCCATACAACCAGTCCTATGACCAGAACACAGGAGGGTCTTATAACAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp TATAGAAACCTACAGTCACAGAGCATCACTTGGCAATTCCGAGTTGGAATTCCTGTGGCAGGTTCTCCTTaGGAGACGATCAGGTCTGAA +
Preference number: 5 (lower is better)
Translates to: YRNLQSQSITWQFRVGIPVAGSP*ETIRSE
Trigger: TTCAGACCTGATCGTCTCCAAAGGAGAACCTGCCAC...AGGAATTCCAACTCGGAATTGCCAAGTGATGCTCTGTGACTGTAGGTTTCTATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp TGTAGTTCTGTATGTGATAGACTTTTAGTTTATGCCAGCAAAGGGTGGTATAAAACCTCCAGCGATGCGTaGTGGCTCACAGCCTCTCCG +
Preference number: 5 (lower is better)
Translates to: CSSVCDRLLVYASKGWYKTSSDA*WLTASP
Trigger: CGGAGAGGCTGTGAGCCACAACGCATCGCTGGAGGT...TTTATACCACCCTTTGCTGGCATAAACTAAAAGTCTATCACATACAGAACTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp GGGGGAGGTTCATTAAGGGTTAGGCAATCAATCAGCAACACTAAAAACCCAAGAGAAATGTGGCGGCTCTaGAACTGTCAAAGTAGCGGA +
Preference number: 5 (lower is better)
Translates to: GGGSLRVRQSISNTKNPREMWRL*NCQSSG
Trigger: TCCGCTACTTTGACAGTTCAAGAGCCGCCACATTTC...TCTTGGGTTTTTAGTGTTGCTGATTGATTGCCTAACCCTTAATGAACCTCCCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATCTGATTCACAGGACCTaGCCGAATGACTGGGGGAGG +
Preference number: 5 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDLIHRT*PNDWGR
Trigger: CCTCCCCCAGTCATTCGGCAAGGTCCTGTGAATCAG...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATCCTTCCTCCACAGAATaGTGGGTGCTGGACTGCCTG +
Preference number: 5 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDPSSTE*WVLDCL
Trigger: CAGGCAGTCCAGCACCCACAATTCTGTGGAGGAAGG...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCGGCTTCGCCTCCTCTTaGATAAGTTACTGTTGGCGT +
Preference number: 5 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLGFASS*ISYCWR
Trigger: ACGCCAACAGTAACTTATCAAAGAGGAGGCGAAGCC...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp GGGGGAGGTTCATTAAGGGTTAGGCAATCAATCAGCAACACTAAAAACCCAAGAGGCTTCGCCTCCTCTTaGATAAGTTACTGTTGGCGT +
Preference number: 5 (lower is better)
Translates to: GGGSLRVRQSISNTKNPRGFASS*ISYCWR
Trigger: ACGCCAACAGTAACTTATCAAAGAGGAGGCGAAGCC...TCTTGGGTTTTTAGTGTTGCTGATTGATTGCCTAACCCTTAATGAACCTCCCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp GTTCTTCCTTGCTGGCTGATGGCTGAAGCAAGCATTCAAGACACTTCCAGTGTTCATCACCATAAACAGTaGACTCAGGGAGCATCAGAT +
Preference number: 5 (lower is better)
Translates to: VLPCWLMAEASIQDTSSVHHHKQ*TQGASD
Trigger: ATCTGATGCTCCCTGAGTCAACTGTTTATGGTGATG...AACACTGGAAGTGTCTTGAATGCTTGCTTCAGCCATCAGCCAGCAAGGAAGAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp ACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCAATTCATGCCACCCTGCTaGGGTGCCTTTGGTGTCCGT +
Preference number: 5 (lower is better)
Translates to: TRFLLGLLLTMTRQPEVQFMPPC*GAFGVR
Trigger: ACGGACACCAAAGGCACCCAAGCAGGGTGGCATGAA...TTGGACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGGCTGAGCCCCAGCCATaGATCATGGACCCAGTGACG +
Preference number: 5 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKAEPQP*IMDPVT
Trigger: CGTCACTGGGTCCATGATCAATGGCTGGGGCTCAGC...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGGGTGGAAGGTCTCGCTaGGCTGCCTTTGTTCCTCGG +
Preference number: 5 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKGGRSR*AAFVPR
Trigger: CCGAGGAACAAAGGCAGCCAAGCGAGACCTTCCACC...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp AGAACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCTCGGCCCACATTTGCTaGCTCTCTTTGTCGGCTCCC +
Preference number: 5 (lower is better)
Translates to: RTRFLLGLLLTMTRQPEVSAHIC*LSLSAP
Trigger: GGGAGCCGACAAAGAGAGCAAGCAAATGTGGGCCGA...GACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS TCA 90 bp GGGATGACCACCGAGAAGGTCGAGCCATCGACTGTCTTGTTTATGTaGTACTTCGTTTCATTACCGAGACACCAAACCTTATATTCTTGG +
Preference number: 5 (lower is better)
Translates to: GMTTEKVEPSTVLFM*YFVSLPRHQTLYSW
Trigger: CCAAGAATATAAGGTTTGGTGTCTCGGTAATGAAACGAAGTATCACATAAACAAGACAGTCGATGGCTCGACCTTCTCGGTGGTCATCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 90 bp ATAATCTTTGTTCAGCTTGTTTTGCTCCATGATGTTATACTGAATTaGTGCCACTTCCGGTTTCTGCTGTCCCGGAGGCTTCCAGTGCTT +
Preference number: 5 (lower is better)
Translates to: IIFVQLVLLHDVILN*CHFRFLLSRRLPVL
Trigger: AAGCACTGGAAGCCTCCGGGACAGCAGAAACCGGAAGTGGCACCAATTCAGTATAACATCATGGAGCAAAACAAGCTGAACAAAGATTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGCCTTCCTCCACAGAATaGTGGGTGCTGGACTGCCTG +
Preference number: 5 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKPSSTE*WVLDCL
Trigger: CAGGCAGTCCAGCACCCACAATTCTGTGGAGGAAGG...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp GGGGGAGGTTCATTAAGGGTTAGGCAATCAATCAGCAACACTAAAAACCCAAGATCCGAGAATCTTGGGTaGAAACAAGGACTCCATCCT +
Preference number: 5 (lower is better)
Translates to: GGGSLRVRQSISNTKNPRSENLG*KQGLHP
Trigger: AGGATGGAGTCCTTGTTTCAACCCAAGATTCTCGGA...TCTTGGGTTTTTAGTGTTGCTGATTGATTGCCTAACCCTTAATGAACCTCCCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAACTTGTGGTCCACCCCTaGGCTGGTTGGTGGGACATC +
Preference number: 5 (lower is better)
Translates to: KHRALTKQARNTSQQFLQLVVHP*AGWWDI
Trigger: GATGTCCCACCAACCAGCCAAGGGGTGGACCACAAG...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp GGGGGAGGTTCATTAAGGGTTAGGCAATCAATCAGCAACACTAAAAACCCAAGACCACGCTGTTTTTCGTaGGCGTCCTCACTTCAAAAA +
Preference number: 5 (lower is better)
Translates to: GGGSLRVRQSISNTKNPRPRCFS*ASSLQK
Trigger: TTTTTGAAGTGAGGACGCCAACGAAAAACAGCGTGG...TCTTGGGTTTTTAGTGTTGCTGATTGATTGCCTAACCCTTAATGAACCTCCCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp TGTAGTTCTGTATGTGATAGACTTTTAGTTTATGCCAGCAAAGGGTGGTATAAATGGTTGTTGCCTGTGTaGGGCCACGTGTCTGCCAGC +
Preference number: 5 (lower is better)
Translates to: CSSVCDRLLVYASKGWYKWLLPV*GHVSAS
Trigger: GCTGGCAGACACGTGGCCCAACACAGGCAACAACCA...TTTATACCACCCTTTGCTGGCATAAACTAAAAGTCTATCACATACAGAACTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp ACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCAAGAGCAGTCATTGTGGTaGTTGCCTGTGTTGGGCCAC +
Preference number: 5 (lower is better)
Translates to: TRFLLGLLLTMTRQPEVQEQSLW*LPVLGH
Trigger: GTGGCCCAACACAGGCAACAACCACAATGACTGCTC...TTGGACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTCCGGCCGTGCAGCAGTaGATGGAGCAGTCATTGTGG +
Preference number: 5 (lower is better)
Translates to: QLVVKNIHLRGICICSCFPAVQQ*MEQSLW
Trigger: CCACAATGACTGCTCCATCAACTGCTGCACGGCCGG...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGGGCTGCCCTGATGGATaGACAAAACGCCCGTCCTTC +
Preference number: 5 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKGCPDG*TKRPSF
Trigger: GAAGGACGGGCGTTTTGTCAATCCATCAGGGCAGCC...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATGTTCGCCTGGATGAGTaGAGTGGTGGCATAGGGAGT +
Preference number: 5 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDVRLDE*SGGIGS
Trigger: ACTCCCTATGCCACCACTCAACTCATCCAGGCGAAC...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAAACCTCCAGCTGTGCCTaGGACTGGACAGTGGGCGAT +
Preference number: 5 (lower is better)
Translates to: KHRALTKQARNTSQQFLQTSSCA*DWTVGD
Trigger: ATCGCCCACTGTCCAGTCCAAGGCACAGCTGGAGGT...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp AGAACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCCTCTCTGGGGTCACTaGGATTTGTTCGCAGGTCAG +
Preference number: 5 (lower is better)
Translates to: RTRFLLGLLLTMTRQPEVPLWGH*DLFAGQ
Trigger: CTGACCTGCGAACAAATCCAAGTGACCCCAGAGAGG...GACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGTTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 90 bp TTATATTCTTGGACCATTCCATTTTGTGTGTCTTCAGGAGGCGGTTaGCAAGTGACCAGGATTGCAGTCCCATTTCCATCATTCTTGGAT +
Preference number: 5 (lower is better)
Translates to: LYSWTIPFCVSSGGG*QVTRIAVPFPSFLD
Trigger: ATCCAAGAATGATGGAAATGGGACTGCAATCCTGGTCACTTGGCAACCGCCTCCTGAAGACACACAAAATGGAATGGTCCAAGAATATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 90 bp ATTATTCTCATCTCCTCTTTCAAATCCCCCAAGTACTTGCATTTCTaGCATATTCCTTCGGCCCACATTTGCTTGCTCTCTTTGTCGGCT +
Preference number: 5 (lower is better)
Translates to: IILISSFKSPKYLHF*HIPSAHICLLSLSA
Trigger: AGCCGACAAAGAGAGCAAGCAAATGTGGGCCGAAGGAATATGGCAGAAATGCAAGTACTTGGGGGATTTGAAAGAGGAGATGAGAATAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 90 bp TTGGCGTCCTCACTTCAAAAACTAACCACTCCGATTCACCATGGCTaGCTCCAGATGGGCGGTAGAGAATTTTATAGCCTTGAATATATT +
Preference number: 5 (lower is better)
Translates to: LASSLQKLTTPIHHG*LQMGGREFYSLEYI
Trigger: AATATATTCAAGGCTATAAAATTCTCTACCGCCCATCTGGAGCCAGCCATGGTGAATCGGAGTGGTTAGTTTTTGAAGTGAGGACGCCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp TGTAGTTCTGTATGTGATAGACTTTTAGTTTATGCCAGCAAAGGGTGGTATAAAGAGCGCGGGTCATCTTaGTCCGTCTCCACTCTTTCC +
Preference number: 5 (lower is better)
Translates to: CSSVCDRLLVYASKGWYKERGSS*SVSTLS
Trigger: GGAAAGAGTGGAGACGGACAAAGATGACCCGCGCTC...TTTATACCACCCTTTGCTGGCATAAACTAAAAGTCTATCACATACAGAACTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAAGAGCGCGGGTCATCTTaGTCCGTCTCCACTCTTTCC +
Preference number: 5 (lower is better)
Translates to: KHRALTKQARNTSQQFLQERGSS*SVSTLS
Trigger: GGAAAGAGTGGAGACGGACAAAGATGACCCGCGCTC...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp ACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCAATTCGGGGAGGGGCACTaGGTGCTTCTTCTAAGGTTT +
Preference number: 5 (lower is better)
Translates to: TRFLLGLLLTMTRQPEVQFGEGH*VLLLRF
Trigger: AAACCTTAGAAGAAGCACCAAGTGCCCCTCCCCGAA...TTGGACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTCTGGGCGACTGTAGGTaGTCAGGTTGCTGTCGCTGT +
Preference number: 5 (lower is better)
Translates to: QLVVKNIHLRGICICSCFLGDCR*SGCCRC
Trigger: ACAGCGACAGCAACCTGACAACCTACAGTCGCCCAG...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTGGCTGCCCTGATGGATaGACAAAACGCCCGTCCTTC +
Preference number: 5 (lower is better)
Translates to: QLVVKNIHLRGICICSCFGCPDG*TKRPSF
Trigger: GAAGGACGGGCGTTTTGTCAATCCATCAGGGCAGCC...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGGTTCGCCTGGATGAGTaGAGTGGTGGCATAGGGAGT +
Preference number: 5 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKVRLDE*SGGIGS
Trigger: ACTCCCTATGCCACCACTCAACTCATCCAGGCGAAC...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAACGCCCACTGGAAATGTaGTCCTCTTCCGAGGCTGAG +
Preference number: 5 (lower is better)
Translates to: KHRALTKQARNTSQQFLQRPLEM*SSSEAE
Trigger: CTCAGCCTCGGAAGAGGACAACATTTCCAGTGGGCG...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGAAAATAAAGACCCGCTaGGCAGCAGCATCCGGTGTG +
Preference number: 5 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKKIKTR*AAASGV
Trigger: CACACCGGATGCTGCTGCCAAGCGGGTCTTTATTTT...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp TATAGAAACCTACAGTCACAGAGCATCACTTGGCAATTCCGAGTTGGAATTCCTATTTCATATCTGGATTaGGGCAGCTCTCCGTCATCT +
Preference number: 5 (lower is better)
Translates to: YRNLQSQSITWQFRVGIPISYLD*GSSPSS
Trigger: AGATGACGGAGAGCTGCCCAAATCCAGATATGAAAT...AGGAATTCCAACTCGGAATTGCCAAGTGATGCTCTGTGACTGTAGGTTTCTATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp ACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCAAGAAATGTGGCGGCTCTaGAACTGTCAAAGTAGCGGA +
Preference number: 5 (lower is better)
Translates to: TRFLLGLLLTMTRQPEVQEMWRL*NCQSSG
Trigger: TCCGCTACTTTGACAGTTCAAGAGCCGCCACATTTC...TTGGACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCAAAGTGACCGTGTTTTaGCTGACATCTGTAACTTCG +
Preference number: 5 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLKVTVF*LTSVTS
Trigger: CGAAGTTACAGATGTCAGCAAAAACACGGTCACTTT...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp GGGGGAGGTTCATTAAGGGTTAGGCAATCAATCAGCAACACTAAAAACCCAAGATATAAGATGTTGGGGTaGCTCCTGAGTTCAAGTTTG +
Preference number: 5 (lower is better)
Translates to: GGGSLRVRQSISNTKNPRYKMLG*LLSSSL
Trigger: CAAACTTGAACTCAGGAGCAACCCCAACATCTTATA...TCTTGGGTTTTTAGTGTTGCTGATTGATTGCCTAACCCTTAATGAACCTCCCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATTTGGACCATTCCATTTaGTGTGTCTTCAGGAGGCGG +
Preference number: 5 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDLDHSI*CVFRRR
Trigger: CCGCCTCCTGAAGACACACAAAATGGAATGGTCCAA...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp TATAGAAACCTACAGTCACAGAGCATCACTTGGCAATTCCGAGTTGGAATTCCTCATCACCATAAACAGTaGACTCAGGGAGCATCAGAT +
Preference number: 5 (lower is better)
Translates to: YRNLQSQSITWQFRVGIPHHHKQ*TQGASD
Trigger: ATCTGATGCTCCCTGAGTCAACTGTTTATGGTGATG...AGGAATTCCAACTCGGAATTGCCAAGTGATGCTCTGTGACTGTAGGTTTCTATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp AGAACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCGCGCCATTATTCATATaGTTGCTGAGGTTCGCCTGG +
Preference number: 5 (lower is better)
Translates to: RTRFLLGLLLTMTRQPEVAPLFI*LLRFAW
Trigger: CCAGGCGAACCTCAGCAACAATATGAATAATGGCGC...GACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGTTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp AGAACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCGGTTGTATGGGATGGTaGGAGGGATCGTGTCATTTG +
Preference number: 5 (lower is better)
Translates to: RTRFLLGLLLTMTRQPEVGCMGW*EGSCHL
Trigger: CAAATGACACGATCCCTCCAACCATCCCATACAACC...GACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGTTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp ACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCAACTTCGGGTCTGCATTTaGGCAACTTCCATGTCAGCT +
Preference number: 5 (lower is better)
Translates to: TRFLLGLLLTMTRQPEVQLRVCI*ATSMSA
Trigger: AGCTGACATGGAAGTTGCCAAAATGCAGACCCGAAG...TTGGACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp ACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCAAACAACAGCACTCATGTaGCTGTCTGTGGACACAGGA +
Preference number: 5 (lower is better)
Translates to: TRFLLGLLLTMTRQPEVQTTALM*LSVDTG
Trigger: TCCTGTGTCCACAGACAGCAACATGAGTGCTGTTGT...TTGGACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp TGTAGTTCTGTATGTGATAGACTTTTAGTTTATGCCAGCAAAGGGTGGTATAAACCTCTCTGGGGTCACTaGGATTTGTTCGCAGGTCAG +
Preference number: 5 (lower is better)
Translates to: CSSVCDRLLVYASKGWYKPLWGH*DLFAGQ
Trigger: CTGACCTGCGAACAAATCCAAGTGACCCCAGAGAGG...TTTATACCACCCTTTGCTGGCATAAACTAAAAGTCTATCACATACAGAACTACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp AGAACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCGTTGAGGATTTCCAGTaGCTTCGCACTGAAACGTCA +
Preference number: 5 (lower is better)
Translates to: RTRFLLGLLLTMTRQPEVVEDFQ*LRTETS
Trigger: TGACGTTTCAGTGCGAAGCAACTGGAAATCCTCAAC...GACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGTTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp TATACTTTGAGAGCCCTTGGCATGAGGTTGAGTCATCACCTTTATATCATTGATGTTGAGGATTTCCAGTaGCTTCGCACTGAAACGTCA +
Preference number: 5 (lower is better)
Translates to: YTLRALGMRLSHHLYIIDVEDFQ*LRTETS
Trigger: TGACGTTTCAGTGCGAAGCAACTGGAAATCCTCAAC...ATCAATGATATAAAGGTGATGACTCAACCTCATGCCAAGGGCTCTCAAAGTATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp TATAGAAACCTACAGTCACAGAGCATCACTTGGCAATTCCGAGTTGGAATTCCTTATAAGATGTTGGGGTaGCTCCTGAGTTCAAGTTTG +
Preference number: 5 (lower is better)
Translates to: YRNLQSQSITWQFRVGIPYKMLG*LLSSSL
Trigger: CAAACTTGAACTCAGGAGCAACCCCAACATCTTATA...AGGAATTCCAACTCGGAATTGCCAAGTGATGCTCTGTGACTGTAGGTTTCTATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAAATTCCCCAGTTCTCTTaGGACCTGCTTGTGGTCCAC +
Preference number: 5 (lower is better)
Translates to: KHRALTKQARNTSQQFLQIPQFS*DLLVVH
Trigger: GTGGACCACAAGCAGGTCCAAAGAGAACTGGGGAAT...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTTTCGGGGAGGGGCACTaGGTGCTTCTTCTAAGGTTT +
Preference number: 5 (lower is better)
Translates to: QLVVKNIHLRGICICSCFFGEGH*VLLLRF
Trigger: AAACCTTAGAAGAAGCACCAAGTGCCCCTCCCCGAA...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCCAGGGAGCATCAGATTaGTTTGTTTGTTATCCAGTT +
Preference number: 5 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLQGASD*FVCYPV
Trigger: AACTGGATAACAAACAAACAAATCTGATGCTCCCTG...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp GGGGGAGGTTCATTAAGGGTTAGGCAATCAATCAGCAACACTAAAAACCCAAGACAGGGAGCATCAGATTaGTTTGTTTGTTATCCAGTT +
Preference number: 5 (lower is better)
Translates to: GGGSLRVRQSISNTKNPRQGASD*FVCYPV
Trigger: AACTGGATAACAAACAAACAAATCTGATGCTCCCTG...TCTTGGGTTTTTAGTGTTGCTGATTGATTGCCTAACCCTTAATGAACCTCCCCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp AGAACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCTTGTATTCTTCACTGTaGCTATGTGGGGGAGGATGC +
Preference number: 5 (lower is better)
Translates to: RTRFLLGLLLTMTRQPEVLYSSL*LCGGGC
Trigger: GCATCCTCCCCCACATAGCAACAGTGAAGAATACAA...GACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGTTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 90 bp AATTCTTCATTATTCTCATCTCCTCTTTCAAATCCCCCAAGTACTTaGATTTCTGCCATATTCCTTCGGCCCACATTTGCTTGCTCTCTT +
Preference number: 5 (lower is better)
Translates to: NSSLFSSPLSNPPST*ISAIFLRPTFACSL
Trigger: AAGAGAGCAAGCAAATGTGGGCCGAAGGAATATGGCAGAAATGCAAGTACTTGGGGGATTTGAAAGAGGAGATGAGAATAATGAAGAATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGTCCGAGAATCTTGGGTaGAAACAAGGACTCCATCCT +
Preference number: 5 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKSENLG*KQGLHP
Trigger: AGGATGGAGTCCTTGTTTCAACCCAAGATTCTCGGA...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAACCACTCTCCAGCTGTTaGATCCGAGAATCTTGGGTT +
Preference number: 5 (lower is better)
Translates to: KHRALTKQARNTSQQFLQPLSSC*IRESWV
Trigger: AACCCAAGATTCTCGGATCAAACAGCTGGAGAGTGG...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAATTGGACCATTCCATTTaGTGTGTCTTCAGGAGGCGG +
Preference number: 5 (lower is better)
Translates to: KHRALTKQARNTSQQFLQLDHSI*CVFRRR
Trigger: CCGCCTCCTGAAGACACACAAAATGGAATGGTCCAA...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTGCGCCATTATTCATATaGTTGCTGAGGTTCGCCTGG +
Preference number: 5 (lower is better)
Translates to: QLVVKNIHLRGICICSCFAPLFI*LLRFAW
Trigger: CCAGGCGAACCTCAGCAACAATATGAATAATGGCGC...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp GAAAAATTGGAACCATTTGGTTCACAGCCCACGATAAAGTCTGTACGTGACCTCTTTGTTCAGCTTGTTTaGCTCCATGATGTTATACTG +
Preference number: 5 (lower is better)
Translates to: EKLEPFGSQPTIKSVRDLFVQLV*LHDVIL
Trigger: CAGTATAACATCATGGAGCAAAACAAGCTGAACAAA...GAGGTCACGTACAGACTTTATCGTGGGCTGTGAACCAAATGGTTCCAATTTTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTCTTCGGGTCTGCATTTaGGCAACTTCCATGTCAGCT +
Preference number: 5 (lower is better)
Translates to: QLVVKNIHLRGICICSCFLRVCI*ATSMSA
Trigger: AGCTGACATGGAAGTTGCCAAAATGCAGACCCGAAG...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTACAACAGCACTCATGTaGCTGTCTGTGGACACAGGA +
Preference number: 5 (lower is better)
Translates to: QLVVKNIHLRGICICSCFTTALM*LSVDTG
Trigger: TCCTGTGTCCACAGACAGCAACATGAGTGCTGTTGT...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp TGTAGTTCTGTATGTGATAGACTTTTAGTTTATGCCAGCAAAGGGTGGTATAAACCACGCTGTTTTTCGTaGGCGTCCTCACTTCAAAAA +
Preference number: 5 (lower is better)
Translates to: CSSVCDRLLVYASKGWYKPRCFS*ASSLQK
Trigger: TTTTTGAAGTGAGGACGCCAACGAAAAACAGCGTGG...TTTATACCACCCTTTGCTGGCATAAACTAAAAGTCTATCACATACAGAACTACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp AGAACAAGATTTTTGCTAGGTTTACTTCTCACAATGACTAGACAACCAGAGGTCCCATTTCCATCATTCTaGGATACAGTTACACTTCGG +
Preference number: 5 (lower is better)
Translates to: RTRFLLGLLLTMTRQPEVPFPSF*DTVTLR
Trigger: CCGAAGTGTAACTGTATCCAAGAATGATGGAAATGG...GACCTCTGGTTGTCTAGTCATTGTGAGAAGTAAACCTAGCAAAAATCTTGTTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTATTTCATATCTGGATTaGGGCAGCTCTCCGTCATCT +
Preference number: 5 (lower is better)
Translates to: QLVVKNIHLRGICICSCFISYLD*GSSPSS
Trigger: AGATGACGGAGAGCTGCCCAAATCCAGATATGAAAT...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp TTGGCAATTCCGAGTTGGAATTCCTCTTATGAGCTTCTAAGGAAATCTTATAAGAAAGTGACCGTGTTTTaGCTGACATCTGTAACTTCG +
Preference number: 5 (lower is better)
Translates to: LAIPSWNSSYELLRKSYKKVTVF*LTSVTS
Trigger: CGAAGTTACAGATGTCAGCAAAAACACGGTCACTTT...CTTATAAGATTTCCTTAGAAGCTCATAAGAGGAATTCCAACTCGGAATTGCCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp CAATTGGTCGTTAAAAACATCCATTTGCGTGGAATATGCATTTGTAGTTGCTTTCCATTTCCATCATTCTaGGATACAGTTACACTTCGG +
Preference number: 5 (lower is better)
Translates to: QLVVKNIHLRGICICSCFPFPSF*DTVTLR
Trigger: CCGAAGTGTAACTGTATCCAAGAATGATGGAAATGG...AAAGCAACTACAAATGCATATTCCACGCAAATGGATGTTTTTAACGACCAATTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS-3UTR CAA 90 bp AAACACAGAGCATTAACAAAACAGGCTAGAAACACTTCTCAACAGTTTCTTCAATTTGTTCAGCTTGTTTaGCTCCATGATGTTATACTG +
Preference number: 5 (lower is better)
Translates to: KHRALTKQARNTSQQFLQFVQLV*LHDVIL
Trigger: CAGTATAACATCATGGAGCAAAACAAGCTGAACAAA...TTGAAGAAACTGTTGAGAAGTGTTTCTAGCCTGTTTTGTTAATGCTCTGTGTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 72 bp CGGTGGAGGAGGACTCACGGGCTGCCGCCTCCTGTCTaGTGGGTGGGGCATGTGCCCGAGGTCCTCCGGACA +
Preference number: 6 (lower is better)
Translates to: RWRRTHGLPPPV*WVGHVPEVLRT
Trigger: TGTCCGGAGGACCTCGGGCACATGCCCCACCCACCAGACAGGAGGCGGCAGCCCGTGAGTCCTCCTCCACCG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 72 bp GAAATTGGCCGTGGCGGTGGAGGAGGACTCACGGGCTaGCGCCTCCTGTCTGGTGGGTGGGGCATGTGCCCG +
Preference number: 6 (lower is better)
Translates to: EIGRGGGGGLTG*RLLSGGWGMCP
Trigger: CGGGCACATGCCCCACCCACCAGACAGGAGGCGGCAGCCCGTGAGTCCTCCTCCACCGCCACGGCCAATTTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 72 bp GTAAGCGCTCCACGTGGCCTCACCGCTGGGGGTCGATaGGGTGCAGGTGTACCGACCCGTGTCACCCAGCTT +
Preference number: 6 (lower is better)
Translates to: VSAPRGLTAGGR*GAGVPTRVTQL
Trigger: AAGCTGGGTGACACGGGTCGGTACACCTGCACCGCATCGACCCCCAGCGGTGAGGCCACGTGGAGCGCTTAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 72 bp TGGGGGAGGATGCGCCGGAGGAGGGGGCAGCAAGTCTaGCCAGTTCATGCCACCCTGCTTGGGTGCCTTTGG +
Preference number: 6 (lower is better)
Translates to: WGRMRRRRGQQV*PVHATLLGCLW
Trigger: CCAAAGGCACCCAAGCAGGGTGGCATGAACTGGGCAGACTTGCTGCCCCCTCCTCCGGCGCATCCTCCCCCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 72 bp ACGGGCTGCCGCCTCCTGTCTGGTGGGTGGGGCATGTaGCCGAGGTCCTCCGGACAATCCTGTAACATGGGC +
Preference number: 6 (lower is better)
Translates to: TGCRLLSGGWGM*PRSSGQSCNMG
Trigger: GCCCATGTTACAGGATTGTCCGGAGGACCTCGGGCACATGCCCCACCCACCAGACAGGAGGCGGCAGCCCGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 72 bp TTCGCTCTTCACCCCGGGACCCGCCCCAGTGCTCGCTaGCACCTCCACACTGTATCGGATCCCAGGAACCAG +
Preference number: 6 (lower is better)
Translates to: FALHPGTRPSAR*HLHTVSDPRNQ
Trigger: CTGGTTCCTGGGATCCGATACAGTGTGGAGGTGGCAGCGAGCACTGGGGCGGGTCCCGGGGTGAAGAGCGAA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 72 bp ACTGAGGTTCGCTCTTCACCCCGGGACCCGCCCCAGTaGTCGCTGCCACCTCCACACTGTATCGGATCCCAG +
Preference number: 6 (lower is better)
Translates to: TEVRSSPRDPPQ*SLPPPHCIGSQ
Trigger: CTGGGATCCGATACAGTGTGGAGGTGGCAGCGAGCACTGGGGCGGGTCCCGGGGTGAAGAGCGAACCTCAGT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 72 bp GGACTTCGATGTAAGCGCTCCACGTGGCCTCACCGCTaGGGGTCGATGCGGTGCAGGTGTACCGACCCGTGT +
Preference number: 6 (lower is better)
Translates to: GLRCKRSTWPHR*GSMRCRCTDPC
Trigger: ACACGGGTCGGTACACCTGCACCGCATCGACCCCCAGCGGTGAGGCCACGTGGAGCGCTTACATCGAAGTCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 72 bp GGCATGGAAGTGGCGGCGGCCAGCAGCATCTTGCATTaGGCGGCGAGCCACTTTCAGGCCCGCATACTCCGC +
Preference number: 6 (lower is better)
Translates to: GMEVAAASSILH*AASHFQARILR
Trigger: GCGGAGTATGCGGGCCTGAAAGTGGCTCGCCGCCAAATGCAAGATGCTGCTGGCCGCCGCCACTTCCATGCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 90 bp GCACTGAGAGGCATGGAAGTGGCGGCGGCCAGCAGCATCTTGCATTaGGCGGCGAGCCACTTTCAGGCCCGCATACTCCGCAGCTGCAGC +
Preference number: 6 (lower is better)
Translates to: ALRGMEVAAASSILH*AASHFQARILRSCS
Trigger: GCTGCAGCTGCGGAGTATGCGGGCCTGAAAGTGGCTCGCCGCCAAATGCAAGATGCTGCTGGCCGCCGCCACTTCCATGCCTCTCAGTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS TCA 72 bp ATGAACGCCGGCTGCCTCACCACGTCGGAGATCTGCTaGGCAAGGCTGACTTGGTCCTCGGGAGACACGGGG +
Preference number: 6 (lower is better)
Translates to: MNAGCLTTSEIC*ARLTWSSGDTG
Trigger: CCCCGTGTCTCCCGAGGACCAAGTCAGCCTTGCTCAGCAGATCTCCGACGTGGTGAGGCAGCCGGCGTTCAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS TCA 72 bp CTGTCTGTGGACACAGGACTCGTGGGCCTTGGGCACTaGGAGGCATGGAAGTGGCGGCGGCCAGCAGCATCT +
Preference number: 6 (lower is better)
Translates to: LSVDTGLVGLGH*EAWKWRRPAAS
Trigger: AGATGCTGCTGGCCGCCGCCACTTCCATGCCTCTCAGTGCCCAAGGCCCACGAGTCCTGTGTCCACAGACAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 72 bp GCATGGAAGTGGCGGCGGCCAGCAGCATCTTGCATTTaGCGGCGAGCCACTTTCAGGCCCGCATACTCCGCA +
Preference number: 6 (lower is better)
Translates to: AWKWRRPAASCI*RRATFRPAYSA
Trigger: TGCGGAGTATGCGGGCCTGAAAGTGGCTCGCCGCCAAATGCAAGATGCTGCTGGCCGCCGCCACTTCCATGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 72 bp CATGTTGCTGTCTGTGGACACAGGACTCGTGGGCCTTaGGCACTGAGAGGCATGGAAGTGGCGGCGGCCAGC +
Preference number: 6 (lower is better)
Translates to: HVAVCGHRTRGP*ALRGMEVAAAS
Trigger: GCTGGCCGCCGCCACTTCCATGCCTCTCAGTGCCCAAGGCCCACGAGTCCTGTGTCCACAGACAGCAACATG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS TCA 72 bp GCTGCCTCACCACGTCGGAGATCTGCTGAGCAAGGCTaGCTTGGTCCTCGGGAGACACGGGGTTTCCGTGAG +
Preference number: 6 (lower is better)
Translates to: AASPRRRSAEQG*LGPRETRGFRE
Trigger: CTCACGGAAACCCCGTGTCTCCCGAGGACCAAGTCAGCCTTGCTCAGCAGATCTCCGACGTGGTGAGGCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 72 bp TCTGCCAGCCATGGCTGCGTGGCAGGTTCACTAATGTaGAGGAGTCCCGGCCTCCCTCCACTGCTGACGGCT +
Preference number: 6 (lower is better)
Translates to: SASHGCVAGSLM*RSPGLPPLLTA
Trigger: AGCCGTCAGCAGTGGAGGGAGGCCGGGACTCCTCAACATTAGTGAACCTGCCACGCAGCCATGGCTGGCAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 72 bp CTGAGAGGCATGGAAGTGGCGGCGGCCAGCAGCATCTaGCATTTGGCGGCGAGCCACTTTCAGGCCCGCATA +
Preference number: 6 (lower is better)
Translates to: LRGMEVAAASSI*HLAASHFQARI
Trigger: TATGCGGGCCTGAAAGTGGCTCGCCGCCAAATGCAAGATGCTGCTGGCCGCCGCCACTTCCATGCCTCTCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 72 bp TCATGTTGCTGTCTGTGGACACAGGACTCGTGGGCCTaGGGCACTGAGAGGCATGGAAGTGGCGGCGGCCAG +
Preference number: 6 (lower is better)
Translates to: SCCCLWTQDSWA*GTERHGSGGGQ
Trigger: CTGGCCGCCGCCACTTCCATGCCTCTCAGTGCCCAAGGCCCACGAGTCCTGTGTCCACAGACAGCAACATGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 90 bp CCATTGCCGGCCGTGCAGCAGTTGATGGAGCAGTCATTGTGGTTGTaGCCTGTGTTGGGCCACGTGTCTGCCAGCCATGGCTGCGTGGCA +
Preference number: 6 (lower is better)
Translates to: PLPAVQQLMEQSLWL*PVLGHVSASHGCVA
Trigger: TGCCACGCAGCCATGGCTGGCAGACACGTGGCCCAACACAGGCAACAACCACAATGACTGCTCCATCAACTGCTGCACGGCCGGCAATGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 72 bp GAGCTCTCAAGGTCCCCAACACTGGATGCTGGGGTCTaGTCCAGCCCACGTAACAACAGCCTTCGGGTCTGC +
Preference number: 6 (lower is better)
Translates to: ELSRSPTLDAGV*SSPRNNSLRVC
Trigger: GCAGACCCGAAGGCTGTTGTTACGTGGGCTGGAGCAGACCCCAGCATCCAGTGTTGGGGACCTTGAGAGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 72 bp GCGGCGAGCCACTTTCAGGCCCGCATACTCCGCAGCTaGAGCAACTGCCTGGGCAAAATCAGCGTCAGTGAA +
Preference number: 6 (lower is better)
Translates to: AASHFQARILRS*SNCLGKISVSE
Trigger: TTCACTGACGCTGATTTTGCCCAGGCAGTTGCTGCAGCTGCGGAGTATGCGGGCCTGAAAGTGGCTCGCCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 90 bp TTGCCATTGCCGGCCGTGCAGCAGTTGATGGAGCAGTCATTGTGGTaGTTGCCTGTGTTGGGCCACGTGTCTGCCAGCCATGGCTGCGTG +
Preference number: 6 (lower is better)
Translates to: LPLPAVQQLMEQSLW*LPVLGHVSASHGCV
Trigger: CACGCAGCCATGGCTGGCAGACACGTGGCCCAACACAGGCAACAACCACAATGACTGCTCCATCAACTGCTGCACGGCCGGCAATGGCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 90 bp TCGCTGTTGCCATTGCCGGCCGTGCAGCAGTTGATGGAGCAGTCATaGTGGTTGTTGCCTGTGTTGGGCCACGTGTCTGCCAGCCATGGC +
Preference number: 6 (lower is better)
Translates to: SLLPLPAVQQLMEQS*WLLPVLGHVSASHG
Trigger: GCCATGGCTGGCAGACACGTGGCCCAACACAGGCAACAACCACAATGACTGCTCCATCAACTGCTGCACGGCCGGCAATGGCAACAGCGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 90 bp AGACAAGGGGTCCTGAAATGTAGCCGTAAGTATGAGGTGGGGAAATaGGCCGTGGCGGTGGAGGAGGACTCACGGGCTGCCGCCTCCTGT +
Preference number: 6 (lower is better)
Translates to: RQGVLKCSRKYEVGK*AVAVEEDSRAAASC
Trigger: ACAGGAGGCGGCAGCCCGTGAGTCCTCCTCCACCGCCACGGCCAATTTCCCCACCTCATACTTACGGCTACATTTCAGGACCCCTTGTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 90 bp CAACAGCACTCATGTTGCTGTCTGTGGACACAGGACTCGTGGGCCTaGGGCACTGAGAGGCATGGAAGTGGCGGCGGCCAGCAGCATCTT +
Preference number: 6 (lower is better)
Translates to: QQHSCCCLWTQDSWA*GTERHGSGGGQQHL
Trigger: AAGATGCTGCTGGCCGCCGCCACTTCCATGCCTCTCAGTGCCCAAGGCCCACGAGTCCTGTGTCCACAGACAGCAACATGAGTGCTGTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS TCA 72 bp GGAGCGCCCACTGGAAATGTTGTCCTCTTCCGAGGCTaGGCCCCAGCCATTGATCATGGACCCAGTGACGGA +
Preference number: 6 (lower is better)
Translates to: GAPTGNVVLFRG*APAIDHGPSDG
Trigger: TCCGTCACTGGGTCCATGATCAATGGCTGGGGCTCAGCCTCGGAAGAGGACAACATTTCCAGTGGGCGCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 72 bp GCCACTTCCGGTTTCTGCTGTCCCGGAGGCTTCCAGTaGTTCTCGCTGGAGTCCCCGGCGCCATTATTCATA +
Preference number: 6 (lower is better)
Translates to: ATSGFCCPGGFQ*FSLESPAPLFI
Trigger: TATGAATAATGGCGCCGGGGACTCCAGCGAGAAGCACTGGAAGCCTCCGGGACAGCAGAAACCGGAAGTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 72 bp CTTTTTCCAGGAGATGGTGGGCTCTGGATGGCCCCGTaGAGGCTGGCATTCCATGACTGCAGGTTCGCCTAC +
Preference number: 6 (lower is better)
Translates to: LFPGDGGLWMAP*RLAFHDCRFAY
Trigger: GTAGGCGAACCTGCAGTCATGGAATGCCAGCCTCCACGGGGCCATCCAGAGCCCACCATCTCCTGGAAAAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 72 bp TTGCCGGCCGTGCAGCAGTTGATGGAGCAGTCATTGTaGTTGTTGCCTGTGTTGGGCCACGTGTCTGCCAGC +
Preference number: 6 (lower is better)
Translates to: LPAVQQLMEQSL*LLPVLGHVSAS
Trigger: GCTGGCAGACACGTGGCCCAACACAGGCAACAACCACAATGACTGCTCCATCAACTGCTGCACGGCCGGCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 72 bp CCTCACCACGTCGGAGATCTGCTGAGCAAGGCTGACTaGGTCCTCGGGAGACACGGGGTTTCCGTGAGAATC +
Preference number: 6 (lower is better)
Translates to: PHHVGDLLSKAD*VLGRHGVSVRI
Trigger: GATTCTCACGGAAACCCCGTGTCTCCCGAGGACCAAGTCAGCCTTGCTCAGCAGATCTCCGACGTGGTGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 72 bp GCCGTGCAGCAGTTGATGGAGCAGTCATTGTGGTTGTaGCCTGTGTTGGGCCACGTGTCTGCCAGCCATGGC +
Preference number: 6 (lower is better)
Translates to: AVQQLMEQSLWL*PVLGHVSASHG
Trigger: GCCATGGCTGGCAGACACGTGGCCCAACACAGGCAACAACCACAATGACTGCTCCATCAACTGCTGCACGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 72 bp CCATTGCCGGCCGTGCAGCAGTTGATGGAGCAGTCATaGTGGTTGTTGCCTGTGTTGGGCCACGTGTCTGCC +
Preference number: 6 (lower is better)
Translates to: PLPAVQQLMEQS*WLLPVLGHVSA
Trigger: GGCAGACACGTGGCCCAACACAGGCAACAACCACAATGACTGCTCCATCAACTGCTGCACGGCCGGCAATGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 72 bp GTCCTGAAATGTAGCCGTAAGTATGAGGTGGGGAAATaGGCCGTGGCGGTGGAGGAGGACTCACGGGCTGCC +
Preference number: 6 (lower is better)
Translates to: VLKCSRKYEVGK*AVAVEEDSRAA
Trigger: GGCAGCCCGTGAGTCCTCCTCCACCGCCACGGCCAATTTCCCCACCTCATACTTACGGCTACATTTCAGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 90 bp GCCGTGCAGCAGTTGATGGAGCAGTCATTGTGGTTGTTGCCTGTGTaGGGCCACGTGTCTGCCAGCCATGGCTGCGTGGCAGGTTCACTA +
Preference number: 6 (lower is better)
Translates to: AVQQLMEQSLWLLPV*GHVSASHGCVAGSL
Trigger: TAGTGAACCTGCCACGCAGCCATGGCTGGCAGACACGTGGCCCAACACAGGCAACAACCACAATGACTGCTCCATCAACTGCTGCACGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 90 bp CGCCCACTGGAAATGTTGTCCTCTTCCGAGGCTGAGCCCCAGCCATaGATCATGGACCCAGTGACGGAGCTCTCAAGGTCCCCAACACTG +
Preference number: 6 (lower is better)
Translates to: RPLEMLSSSEAEPQP*IMDPVTELSRSPTL
Trigger: CAGTGTTGGGGACCTTGAGAGCTCCGTCACTGGGTCCATGATCAATGGCTGGGGCTCAGCCTCGGAAGAGGACAACATTTCCAGTGGGCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 90 bp GTTGTCAGGTTGCTGTCGCTGTTGCCATTGCCGGCCGTGCAGCAGTaGATGGAGCAGTCATTGTGGTTGTTGCCTGTGTTGGGCCACGTG +
Preference number: 6 (lower is better)
Translates to: VVRLLSLLPLPAVQQ*MEQSLWLLPVLGHV
Trigger: CACGTGGCCCAACACAGGCAACAACCACAATGACTGCTCCATCAACTGCTGCACGGCCGGCAATGGCAACAGCGACAGCAACCTGACAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 90 bp GGGGTCTGCTCCAGCCCACGTAACAACAGCCTTCGGGTCTGCATTTaGGCAACTTCCATGTCAGCTTCGTCCTCCTCCTCTTCTGGGGCA +
Preference number: 6 (lower is better)
Translates to: GVCSSPRNNSLRVCI*ATSMSASSSSSSGA
Trigger: TGCCCCAGAAGAGGAGGAGGACGAAGCTGACATGGAAGTTGCCAAAATGCAGACCCGAAGGCTGTTGTTACGTGGGCTGGAGCAGACCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 90 bp GACGCGAGTTTTGGCACCATGACAGGCCGTACCTCCAGCTGTGCCTaGGACTGGACAGTGGGCGATTTTATAGCAGGTGGTGGCACTGGA +
Preference number: 6 (lower is better)
Translates to: DASFGTMTGRTSSCA*DWTVGDFIAGGGTG
Trigger: TCCAGTGCCACCACCTGCTATAAAATCGCCCACTGTCCAGTCCAAGGCACAGCTGGAGGTACGGCCTGTCATGGTGCCAAAACTCGCGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS TCA 72 bp ACGAAGACGGGAGCGGTTCTTTTCACCTCTCCACCTTaGCCCAGCTCTCATTCTGCCGGAGACACCCACAGG +
Preference number: 6 (lower is better)
Translates to: TKTGAVLFTSPP*PSSHSAGDTHR
Trigger: CCTGTGGGTGTCTCCGGCAGAATGAGAGCTGGGTCAAGGTGGAGAGGTGAAAAGAACCGCTCCCGTCTTCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231580.2
CDS GCA 72 bp GACCATGAGGATAATCCAACAGGCTGCCCCAATGCCTaGAATGAACGCCGGCTGCCTCACCACGTCGGAGAT +
Preference number: 6 (lower is better)
Translates to: DHEDNPTGCPNA*NERRLPHHVGD
Trigger: ATCTCCGACGTGGTGAGGCAGCCGGCGTTCATTGCAGGCATTGGGGCAGCCTGTTGGATTATCCTCATGGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 72 bp CGGGTCTGGCTTTCTGGATCACAACAGCACTCATGTTaGTGTCTGTGGACACAGGACTCGTGGGCCTTGGGC +
Preference number: 6 (lower is better)
Translates to: RVWLSGSQQHSC*CLWTQDSWALG
Trigger: GCCCAAGGCCCACGAGTCCTGTGTCCACAGACAGCAACATGAGTGCTGTTGTGATCCAGAAAGCCAGACCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 72 bp GTTGTTGCCTGTGTTGGGCCACGTGTCTGCCAGCCATaGCTGCGTGGCAGGTTCACTAATGTTGAGGAGTCC +
Preference number: 6 (lower is better)
Translates to: VVACVGPRVCQP*LRGRFTNVEES
Trigger: GGACTCCTCAACATTAGTGAACCTGCCACGCAGCCATGGCTGGCAGACACGTGGCCCAACACAGGCAACAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 72 bp CAGTTGATGGAGCAGTCATTGTGGTTGTTGCCTGTGTaGGGCCACGTGTCTGCCAGCCATGGCTGCGTGGCA +
Preference number: 6 (lower is better)
Translates to: QLMEQSLWLLPV*GHVSASHGCVA
Trigger: TGCCACGCAGCCATGGCTGGCAGACACGTGGCCCAACACAGGCAACAACCACAATGACTGCTCCATCAACTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 72 bp GCGGGTCTGGCTTTCTGGATCACAACAGCACTCATGTaGCTGTCTGTGGACACAGGACTCGTGGGCCTTGGG +
Preference number: 6 (lower is better)
Translates to: AGLAFWITTALM*LSVDTGLVGLG
Trigger: CCCAAGGCCCACGAGTCCTGTGTCCACAGACAGCAACATGAGTGCTGTTGTGATCCAGAAAGCCAGACCCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 72 bp TGGCCGAGGTGCGTCTTTGCTGGTGGAAGGTCTCGCTaGGCTGCCTTTGTTCCTCGGCCTTTCCCGTCATTT +
Preference number: 6 (lower is better)
Translates to: WPRCVFAGGRSR*AAFVPRPFPSF
Trigger: AAATGACGGGAAAGGCCGAGGAACAAAGGCAGCCAAGCGAGACCTTCCACCAGCAAAGACGCACCTCGGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 90 bp ATATCCTCTTGGCCGAGGTGCGTCTTTGCTGGTGGAAGGTCTCGCTaGGCTGCCTTTGTTCCTCGGCCTTTCCCGTCATTTGGCTGTTCC +
Preference number: 6 (lower is better)
Translates to: ISSWPRCVFAGGRSR*AAFVPRPFPSFGCS
Trigger: GGAACAGCCAAATGACGGGAAAGGCCGAGGAACAAAGGCAGCCAAGCGAGACCTTCCACCAGCAAAGACGCACCTCGGCCAAGAGGATAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS TCA 72 bp TGCTGTCGCTGTTGCCATTGCCGGCCGTGCAGCAGTTaGTGGAGCAGTCATTGTGGTTGTTGCCTGTGTTGG +
Preference number: 6 (lower is better)
Translates to: CCRCCHCRPCSS*WSSHCGCCLCW
Trigger: CCAACACAGGCAACAACCACAATGACTGCTCCATCAACTGCTGCACGGCCGGCAATGGCAACAGCGACAGCA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 72 bp CCAGATGCTGAAGACCATGAGGATAATCCAACAGGCTaGCCCAATGCCTGCAATGAACGCCGGCTGCCTCAC +
Preference number: 6 (lower is better)
Translates to: PDAEDHEDNPTG*PNACNERRLPH
Trigger: GTGAGGCAGCCGGCGTTCATTGCAGGCATTGGGGCAGCCTGTTGGATTATCCTCATGGTCTTCAGCATCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 72 bp CTATACAATCAGCTGGGCGACTGTAGGTTGTCAGGTTaGTGTCGCTGTTGCCATTGCCGGCCGTGCAGCAGT +
Preference number: 6 (lower is better)
Translates to: LYNQLGDCRLSG*CRCCHCRPCSS
Trigger: ACTGCTGCACGGCCGGCAATGGCAACAGCGACAGCAACCTGACAACCTACAGTCGCCCAGCTGATTGTATAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 72 bp ATGTTGTATTCTTCACTGTTGCTATGTGGGGGAGGATaGGCCGGAGGAGGGGGCAGCAAGTCTGCCCAGTTC +
Preference number: 6 (lower is better)
Translates to: MLYSSLLLCGGG*AGGGGSKSAQF
Trigger: GAACTGGGCAGACTTGCTGCCCCCTCCTCCGGCGCATCCTCCCCCACATAGCAACAGTGAAGAATACAACAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 72 bp CACTTTCAGGCCCGCATACTCCGCAGCTGCAGCAACTaGCTGGGCAAAATCAGCGTCAGTGAAAAAGGAGCC +
Preference number: 6 (lower is better)
Translates to: HFQARILRSCSN*LGKISVSEKGA
Trigger: GGCTCCTTTTTCACTGACGCTGATTTTGCCCAGGCAGTTGCTGCAGCTGCGGAGTATGCGGGCCTGAAAGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 72 bp GGTCTACAGTACGGAAGAATATCCTCTTGGCCGAGGTaGGTCTTTGCTGGTGGAAGGTCTCGCTTGGCTGCC +
Preference number: 6 (lower is better)
Translates to: GLQYGRISSWPR*VFAGGRSRLAA
Trigger: GGCAGCCAAGCGAGACCTTCCACCAGCAAAGACGCACCTCGGCCAAGAGGATATTCTTCCGTACTGTAGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 72 bp TTCAGGCCCGCATACTCCGCAGCTGCAGCAACTGCCTaGGCAAAATCAGCGTCAGTGAAAAAGGAGCCATCG +
Preference number: 6 (lower is better)
Translates to: FRPAYSAAAATA*AKSASVKKEPS
Trigger: CGATGGCTCCTTTTTCACTGACGCTGATTTTGCCCAGGCAGTTGCTGCAGCTGCGGAGTATGCGGGCCTGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 72 bp CTGGACAGTGGGCGATTTTATAGCAGGTGGTGGCACTaGAGGGGGTGGAAGATCATCTGCGTAGGCTTCCCT +
Preference number: 6 (lower is better)
Translates to: LDSGRFYSRWWH*RGWKIICVGFP
Trigger: AGGGAAGCCTACGCAGATGATCTTCCACCCCCTCCAGTGCCACCACCTGCTATAAAATCGCCCACTGTCCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 72 bp CTTGGACTGGACAGTGGGCGATTTTATAGCAGGTGGTaGCACTGGAGGGGGTGGAAGATCATCTGCGTAGGC +
Preference number: 6 (lower is better)
Translates to: LGLDSGRFYSRW*HWRGWKIICVG
Trigger: GCCTACGCAGATGATCTTCCACCCCCTCCAGTGCCACCACCTGCTATAAAATCGCCCACTGTCCAGTCCAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 72 bp ACCATGACAGGCCGTACCTCCAGCTGTGCCTTGGACTaGACAGTGGGCGATTTTATAGCAGGTGGTGGCACT +
Preference number: 6 (lower is better)
Translates to: TMTGRTSSCALD*TVGDFIAGGGT
Trigger: AGTGCCACCACCTGCTATAAAATCGCCCACTGTCCAGTCCAAGGCACAGCTGGAGGTACGGCCTGTCATGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 72 bp AAGAATATCCTCTTGGCCGAGGTGCGTCTTTGCTGGTaGAAGGTCTCGCTTGGCTGCCTTTGTTCCTCGGCC +
Preference number: 6 (lower is better)
Translates to: KNILLAEVRLCW*KVSLGCLCSSA
Trigger: GGCCGAGGAACAAAGGCAGCCAAGCGAGACCTTCCACCAGCAAAGACGCACCTCGGCCAAGAGGATATTCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 72 bp CGGAAGAATATCCTCTTGGCCGAGGTGCGTCTTTGCTaGTGGAAGGTCTCGCTTGGCTGCCTTTGTTCCTCG +
Preference number: 6 (lower is better)
Translates to: RKNILLAEVRLC*WKVSLGCLCSS
Trigger: CGAGGAACAAAGGCAGCCAAGCGAGACCTTCCACCAGCAAAGACGCACCTCGGCCAAGAGGATATTCTTCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 72 bp CTGTGTAGCCCAGCGAATTGTCATCGTTATCAGAGGTaGGGGCTGGCGTTCCGTTGTCGTTCCCCCTCTCTA +
Preference number: 6 (lower is better)
Translates to: LCSPANCHRYQR*GLAFRCRSPSL
Trigger: TAGAGAGGGGGAACGACAACGGAACGCCAGCCCCCACCTCTGATAACGATGACAATTCGCTGGGCTACACAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000232205.2
CDS CAA 72 bp CTTGGCAGCAGCATCCGGTGTGAGCGCGGGTCATCTTaGTCCGTCTCCACTCTTTCCCCACCTTTGTACCAT +
Preference number: 6 (lower is better)
Translates to: LGSSIRCERGSS*SVSTLSPPLYH
Trigger: ATGGTACAAAGGTGGGGAAAGAGTGGAGACGGACAAAGATGACCCGCGCTCACACCGGATGCTGCTGCCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023600.8
ENSMUST00000231580.2
ENSMUST00000232205.2
CDS CAA 72 bp AGTGCCATCCACTGCTACAGTCTGATTCACAGGACCTaGCCGAATGACTGGGGGAGGCCGGTCTGCAATCAC +
Preference number: 6 (lower is better)
Translates to: SAIHCYSLIHRT*PNDWGRPVCNH
Trigger: GTGATTGCAGACCGGCCTCCCCCAGTCATTCGGCAAGGTCCTGTGAATCAGACTGTAGCAGTGGATGGCACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 72 bp GAAATGTTGTCCTCTTCCGAGGCTGAGCCCCAGCCATaGATCATGGACCCAGTGACGGAGCTCTCAAGGTCC +
Preference number: 6 (lower is better)
Translates to: EMLSSSEAEPQP*IMDPVTELSRS
Trigger: GGACCTTGAGAGCTCCGTCACTGGGTCCATGATCAATGGCTGGGGCTCAGCCTCGGAAGAGGACAACATTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 90 bp AAAGACCCGCTTGGCAGCAGCATCCGGTGTGAGCGCGGGTCATCTTaGTCCGTCTCCACTCTTTCCCCACCTTTGTACCATTCTATCGTC +
Preference number: 6 (lower is better)
Translates to: KDPLGSSIRCERGSS*SVSTLSPPLYHSIV
Trigger: GACGATAGAATGGTACAAAGGTGGGGAAAGAGTGGAGACGGACAAAGATGACCCGCGCTCACACCGGATGCTGCTGCCAAGCGGGTCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023600.8
ENSMUST00000231580.2
ENSMUST00000232205.2
CDS TCA 72 bp AGGACGGGACTTTCCGGATACCCGCATACGTGCTGGTaGGTCCGTTTCTCTTCTTGCGGTGTCTGTAAAGCC +
Preference number: 6 (lower is better)
Translates to: RTGLSGYPHTCW*VRFSSCGVCKA
Trigger: GGCTTTACAGACACCGCAAGAAGAGAAACGGACTCACCAGCACGTATGCGGGTATCCGGAAAGTCCCGTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 72 bp GACCGCTGGACGTTCGTAATGGTGAGGTCTCCTGTCTaGGAAACTGAAAATCGGCTAGAGGACTGTGGAGGC +
Preference number: 6 (lower is better)
Translates to: DRWTFVMVRSPV*ETENRLEDCGG
Trigger: GCCTCCACAGTCCTCTAGCCGATTTTCAGTTTCGCAGACAGGAGACCTCACCATTACGAACGTCCAGCGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 72 bp GTCATTGTGGTTGTTGCCTGTGTTGGGCCACGTGTCTaGCAGCCATGGCTGCGTGGCAGGTTCACTAATGTT +
Preference number: 6 (lower is better)
Translates to: VIVVVACVGPRV*QPWLRGRFTNV
Trigger: AACATTAGTGAACCTGCCACGCAGCCATGGCTGGCAGACACGTGGCCCAACACAGGCAACAACCACAATGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 72 bp GTCTGCTCCAGCCCACGTAACAACAGCCTTCGGGTCTaGATTTTGGCAACTTCCATGTCAGCTTCGTCCTCC +
Preference number: 6 (lower is better)
Translates to: VCSSPRNNSLRV*ILATSMSASSS
Trigger: GGAGGACGAAGCTGACATGGAAGTTGCCAAAATGCAGACCCGAAGGCTGTTGTTACGTGGGCTGGAGCAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 72 bp GAGTTTTGGCACCATGACAGGCCGTACCTCCAGCTGTaGCTTGGACTGGACAGTGGGCGATTTTATAGCAGG +
Preference number: 6 (lower is better)
Translates to: EFWHHDRPYLQL*LGLDSGRFYSR
Trigger: CCTGCTATAAAATCGCCCACTGTCCAGTCCAAGGCACAGCTGGAGGTACGGCCTGTCATGGTGCCAAAACTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 72 bp GTACGGAAGAATATCCTCTTGGCCGAGGTGCGTCTTTaGTGGTGGAAGGTCTCGCTTGGCTGCCTTTGTTCC +
Preference number: 6 (lower is better)
Translates to: VRKNILLAEVRL*WWKVSLGCLCS
Trigger: GGAACAAAGGCAGCCAAGCGAGACCTTCCACCAGCAAAGACGCACCTCGGCCAAGAGGATATTCTTCCGTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 72 bp CCCAGTTCTCTTTGGACCTGCTTGTGGTCCACCCCTTaGCTGGTTGGTGGGACATCTTGCGTTTTCACTGGA +
Preference number: 6 (lower is better)
Translates to: PSSLWTCLWSTP*LVGGTSCVFTG
Trigger: TCCAGTGAAAACGCAAGATGTCCCACCAACCAGCCAAGGGGTGGACCACAAGCAGGTCCAAAGAGAACTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 72 bp ATCTACGGACATGTTGTATTCTTCACTGTTGCTATGTaGGGGAGGATGCGCCGGAGGAGGGGGCAGCAAGTC +
Preference number: 6 (lower is better)
Translates to: IYGHVVFFTVAM*GRMRRRRGQQV
Trigger: GACTTGCTGCCCCCTCCTCCGGCGCATCCTCCCCCACATAGCAACAGTGAAGAATACAACATGTCCGTAGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 72 bp CTTTCTGGATCACAACAGCACTCATGTTGCTGTCTGTaGACACAGGACTCGTGGGCCTTGGGCACTGAGAGG +
Preference number: 6 (lower is better)
Translates to: LSGSQQHSCCCL*TQDSWALGTER
Trigger: CCTCTCAGTGCCCAAGGCCCACGAGTCCTGTGTCCACAGACAGCAACATGAGTGCTGTTGTGATCCAGAAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 72 bp TGCCTTGGACTGGACAGTGGGCGATTTTATAGCAGGTaGTGGCACTGGAGGGGGTGGAAGATCATCTGCGTA +
Preference number: 6 (lower is better)
Translates to: CLGLDSGRFYSR*WHWRGWKIICV
Trigger: TACGCAGATGATCTTCCACCCCCTCCAGTGCCACCACCTGCTATAAAATCGCCCACTGTCCAGTCCAAGGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 72 bp TTGCTGTCGCTGTTGCCATTGCCGGCCGTGCAGCAGTaGATGGAGCAGTCATTGTGGTTGTTGCCTGTGTTG +
Preference number: 6 (lower is better)
Translates to: LLSLLPLPAVQQ*MEQSLWLLPVL
Trigger: CAACACAGGCAACAACCACAATGACTGCTCCATCAACTGCTGCACGGCCGGCAATGGCAACAGCGACAGCAA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 72 bp TTTGGCACCATGACAGGCCGTACCTCCAGCTGTGCCTaGGACTGGACAGTGGGCGATTTTATAGCAGGTGGT +
Preference number: 6 (lower is better)
Translates to: FGTMTGRTSSCA*DWTVGDFIAGG
Trigger: ACCACCTGCTATAAAATCGCCCACTGTCCAGTCCAAGGCACAGCTGGAGGTACGGCCTGTCATGGTGCCAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 90 bp AATCTTCCTGACGAAGACGGGAGCGGTTCTTTTCACCTCTCCACCTaGACCCAGCTCTCATTCTGCCGGAGACACCCACAGGGGAAGTTA +
Preference number: 6 (lower is better)
Translates to: NLPDEDGSGSFHLST*TQLSFCRRHPQGKL
Trigger: TAACTTCCCCTGTGGGTGTCTCCGGCAGAATGAGAGCTGGGTCAAGGTGGAGAGGTGAAAAGAACCGCTCCCGTCTTCGTCAGGAAGATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231580.2
CDS TCA 72 bp CAGCTGAGGATTAAAGTGCCATCCACTGCTACAGTCTaGTTCACAGGACCTTGCCGAATGACTGGGGGAGGC +
Preference number: 6 (lower is better)
Translates to: QLRIKVPSTATV*FTGPCRMTGGG
Trigger: GCCTCCCCCAGTCATTCGGCAAGGTCCTGTGAATCAGACTGTAGCAGTGGATGGCACTTTAATCCTCAGCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 72 bp CCCCTTCGTCGGGCCTACTCTTCCGTCCATGGACTATaGGTAAGAAAAATAAAGACCCGCTTGGCAGCAGCA +
Preference number: 6 (lower is better)
Translates to: PLRRAYSSVHGL*VRKIKTRLAAA
Trigger: TGCTGCTGCCAAGCGGGTCTTTATTTTTCTTACGCATAGTCCATGGACGGAAGAGTAGGCCCGACGAAGGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023600.8
ENSMUST00000231580.2
ENSMUST00000232205.2
CDS GCA 72 bp CCCCTTTCTTGTGGCCTTGACTCCCGGATGTACTACTaGCCCGATCTGAGCTGTTATAAGACCCTCCTGTGT +
Preference number: 6 (lower is better)
Translates to: PLSCGLDSRMYY*PDLSCYKTLLC
Trigger: ACACAGGAGGGTCTTATAACAGCTCAGATCGGGGCAGTAGTACATCCGGGAGTCAAGGCCACAAGAAAGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 72 bp GTTCTCTTTGGACCTGCTTGTGGTCCACCCCTTGGCTaGTTGGTGGGACATCTTGCGTTTTCACTGGATCTG +
Preference number: 6 (lower is better)
Translates to: VLFGPACGPPLG*LVGHLAFSLDL
Trigger: CAGATCCAGTGAAAACGCAAGATGTCCCACCAACCAGCCAAGGGGTGGACCACAAGCAGGTCCAAAGAGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 72 bp AAGACAACATTCCCCAGTTCTCTTTGGACCTGCTTGTaGTCCACCCCTTGGCTGGTTGGTGGGACATCTTGC +
Preference number: 6 (lower is better)
Translates to: KTTFPSSLWTCL*STPWLVGGTSC
Trigger: GCAAGATGTCCCACCAACCAGCCAAGGGGTGGACCACAAGCAGGTCCAAAGAGAACTGGGGAATGTTGTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 72 bp CCAGCCCACGTAACAACAGCCTTCGGGTCTGCATTTTaGCAACTTCCATGTCAGCTTCGTCCTCCTCCTCTT +
Preference number: 6 (lower is better)
Translates to: PAHVTTAFGSAF*QLPCQLRPPPL
Trigger: AAGAGGAGGAGGACGAAGCTGACATGGAAGTTGCCAAAATGCAGACCCGAAGGCTGTTGTTACGTGGGCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 72 bp TCCAGCCCACGTAACAACAGCCTTCGGGTCTGCATTTaGGCAACTTCCATGTCAGCTTCGTCCTCCTCCTCT +
Preference number: 6 (lower is better)
Translates to: SSPRNNSLRVCI*ATSMSASSSSS
Trigger: AGAGGAGGAGGACGAAGCTGACATGGAAGTTGCCAAAATGCAGACCCGAAGGCTGTTGTTACGTGGGCTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 72 bp AGTACGGAAGAATATCCTCTTGGCCGAGGTGCGTCTTaGCTGGTGGAAGGTCTCGCTTGGCTGCCTTTGTTC +
Preference number: 6 (lower is better)
Translates to: STEEYPLGRGAS*LVEGLAWLPLF
Trigger: GAACAAAGGCAGCCAAGCGAGACCTTCCACCAGCAAAGACGCACCTCGGCCAAGAGGATATTCTTCCGTACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS TCA 72 bp GACGTTCGTAATGGTGAGGTCTCCTGTCTGCGAAACTaGAAATCGGCTAGAGGACTGTGGAGGCTGGTAGGA +
Preference number: 6 (lower is better)
Translates to: DVRNGEVSCLRN*KSARGLWRLVG
Trigger: TCCTACCAGCCTCCACAGTCCTCTAGCCGATTTTCAGTTTCGCAGACAGGAGACCTCACCATTACGAACGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS TCA 72 bp GAATTGTGGGTGCTGGACTGCCTGTGGCCACACAGCTaGGGATTAAAGTGCCATCCACTGCTACAGTCTGAT +
Preference number: 6 (lower is better)
Translates to: ELWVLDCLWPHS*GLKCHPLLQSD
Trigger: ATCAGACTGTAGCAGTGGATGGCACTTTAATCCTCAGCTGTGTGGCCACAGGCAGTCCAGCACCCACAATTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS TCA 72 bp CGTAGCGGATCTGCAGCACGCCACTCTCCAGCTGTTTaGTCCGAGAATCTTGGGTTGAAACAAGGACTCCAT +
Preference number: 6 (lower is better)
Translates to: RSGSAARHSPAV*SENLGLKQGLH
Trigger: ATGGAGTCCTTGTTTCAACCCAAGATTCTCGGATCAAACAGCTGGAGAGTGGCGTGCTGCAGATCCGCTACG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS TCA 72 bp TTGAGATTGTTGGTCCACCGTCCAGTGCACTTCGACTaGGGAGGAAGAAAGGATGGTCGGGTTGTGCAGATG +
Preference number: 6 (lower is better)
Translates to: LRLLVHRPVHFD*GGRKDGRVVQM
Trigger: CATCTGCACAACCCGACCATCCTTTCTTCCTCCTCAGTCGAAGTGCACTGGACGGTGGACCAACAATCTCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS TCA 72 bp GTGGCCTTGACTCCCGGATGTACTACTGCCCCGATCTaGGCTGTTATAAGACCCTCCTGTGTTCTGGTCATA +
Preference number: 6 (lower is better)
Translates to: VALTPGCTTAPI*AVIRPSCVLVI
Trigger: TATGACCAGAACACAGGAGGGTCTTATAACAGCTCAGATCGGGGCAGTAGTACATCCGGGAGTCAAGGCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS TCA 72 bp CCTCTCTGGGGTCACTTGGATTTGTTCGCAGGTCAGTaGCTTGTCTTCCATCCAGAGCTTCTCTCCCCTTGT +
Preference number: 6 (lower is better)
Translates to: PLWGHLDLFAGQ*LVFHPELLSPC
Trigger: ACAAGGGGAGAGAAGCTCTGGATGGAAGACAAGTCACTGACCTGCGAACAAATCCAAGTGACCCCAGAGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 72 bp CTTTGGAGACGATCAGGTCTGAAGGGTGTTCAACAATaGGGGGTGGAAAATCTTCCTGACGAAGACGGGAGC +
Preference number: 6 (lower is better)
Translates to: LWRRSGLKGVQQ*GVENLPDEDGS
Trigger: GCTCCCGTCTTCGTCAGGAAGATTTTCCACCCCGCATTGTTGAACACCCTTCAGACCTGATCGTCTCCAAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023600.8
ENSMUST00000231580.2
ENSMUST00000232205.2
CDS GCA 72 bp TCTTTTCACCTCTCCACCTTGACCCAGCTCTCATTCTaGCGGAGACACCCACAGGGGAAGTTATTTCAGCCA +
Preference number: 6 (lower is better)
Translates to: SFHLSTLTQLSF*RRHPQGKLFQP
Trigger: TGGCTGAAATAACTTCCCCTGTGGGTGTCTCCGGCAGAATGAGAGCTGGGTCAAGGTGGAGAGGTGAAAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231580.2
CDS CCA 72 bp TGCTACAGTCTGATTCACAGGACCTTGCCGAATGACTaGGGGAGGCCGGTCTGCAATCACATCAGTAACTTC +
Preference number: 6 (lower is better)
Translates to: CYSLIHRTLPND*GRPVCNHISNF
Trigger: GAAGTTACTGATGTGATTGCAGACCGGCCTCCCCCAGTCATTCGGCAAGGTCCTGTGAATCAGACTGTAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 72 bp CGATCTATCTGTCCTTGCTTCTATAGACGCGAGTTTTaGCACCATGACAGGCCGTACCTCCAGCTGTGCCTT +
Preference number: 6 (lower is better)
Translates to: RSICPCFYRREF*HHDRPYLQLCL
Trigger: AAGGCACAGCTGGAGGTACGGCCTGTCATGGTGCCAAAACTCGCGTCTATAGAAGCAAGGACAGATAGATCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 72 bp GTCCATGGACTATGCGTAAGAAAAATAAAGACCCGCTaGGCAGCAGCATCCGGTGTGAGCGCGGGTCATCTT +
Preference number: 6 (lower is better)
Translates to: VHGLCVRKIKTR*AAASGVSAGHL
Trigger: AAGATGACCCGCGCTCACACCGGATGCTGCTGCCAAGCGGGTCTTTATTTTTCTTACGCATAGTCCATGGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023600.8
ENSMUST00000231580.2
ENSMUST00000232205.2
CDS CAA 72 bp CTCTTTGGACCTGCTTGTGGTCCACCCCTTGGCTGGTaGGTGGGACATCTTGCGTTTTCACTGGATCTGATA +
Preference number: 6 (lower is better)
Translates to: LFGPACGPPLGW*VGHLAFSLDLI
Trigger: TATCAGATCCAGTGAAAACGCAAGATGTCCCACCAACCAGCCAAGGGGTGGACCACAAGCAGGTCCAAAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 72 bp TATAATTGGCTATACAATCAGCTGGGCGACTGTAGGTaGTCAGGTTGCTGTCGCTGTTGCCATTGCCGGCCG +
Preference number: 6 (lower is better)
Translates to: YNWLYNQLGDCR*SGCCRCCHCRP
Trigger: CGGCCGGCAATGGCAACAGCGACAGCAACCTGACAACCTACAGTCGCCCAGCTGATTGTATAGCCAATTATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 90 bp TACTCTTCCGTCCATGGACTATGCGTAAGAAAAATAAAGACCCGCTaGGCAGCAGCATCCGGTGTGAGCGCGGGTCATCTTTGTCCGTCT +
Preference number: 6 (lower is better)
Translates to: YSSVHGLCVRKIKTR*AAASGVSAGHLCPS
Trigger: AGACGGACAAAGATGACCCGCGCTCACACCGGATGCTGCTGCCAAGCGGGTCTTTATTTTTCTTACGCATAGTCCATGGACGGAAGAGTA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023600.8
ENSMUST00000231580.2
ENSMUST00000232205.2
CDS CAA 90 bp GGCGGTTGCCAAGTGACCAGGATTGCAGTCCCATTTCCATCATTCTaGGATACAGTTACACTTCGGGGAGGGGCACTTGGTGCTTCTTCT +
Preference number: 6 (lower is better)
Translates to: GGCQVTRIAVPFPSF*DTVTLRGGALGASS
Trigger: AGAAGAAGCACCAAGTGCCCCTCCCCGAAGTGTAACTGTATCCAAGAATGATGGAAATGGGACTGCAATCCTGGTCACTTGGCAACCGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 90 bp CTGTGCCTCTCTGGGGTCACTTGGATTTGTTCGCAGGTCAGTGACTaGTCTTCCATCCAGAGCTTCTCTCCCCTTGTAACTGCCTCCTTT +
Preference number: 6 (lower is better)
Translates to: LCLSGVTWICSQVSD*SSIQSFSPLVTASF
Trigger: AAAGGAGGCAGTTACAAGGGGAGAGAAGCTCTGGATGGAAGACAAGTCACTGACCTGCGAACAAATCCAAGTGACCCCAGAGAGGCACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 90 bp GGCAACCACCTGGTCCCGAGGTTTTACAACGAAATGTGGCGGCTCTaGAACTGTCAAAGTAGCGGAAGCTTCAGCTTTCCCGACCATATT +
Preference number: 6 (lower is better)
Translates to: GNHLVPRFYNEMWRL*NCQSSGSFSFPDHI
Trigger: AATATGGTCGGGAAAGCTGAAGCTTCCGCTACTTTGACAGTTCAAGAGCCGCCACATTTCGTTGTAAAACCTCGGGACCAGGTGGTTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS TCA 72 bp CAGAGTGGCAGGTTCTCCTTTGGAGACGATCAGGTCTaGAGGGTGTTCAACAATGCGGGGTGGAAAATCTTC +
Preference number: 6 (lower is better)
Translates to: QSGRFSFGDDQV*RVFNNAGWKIF
Trigger: GAAGATTTTCCACCCCGCATTGTTGAACACCCTTCAGACCTGATCGTCTCCAAAGGAGAACCTGCCACTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023600.8
ENSMUST00000231580.2
ENSMUST00000232205.2
CDS CCA 72 bp AGCACGCCACTCTCCAGCTGTTTGATCCGAGAATCTTaGGTTGAAACAAGGACTCCATCCTTCCTCCACAGA +
Preference number: 6 (lower is better)
Translates to: STPLSSCLIRES*VETRTPSFLHR
Trigger: TCTGTGGAGGAAGGATGGAGTCCTTGTTTCAACCCAAGATTCTCGGATCAAACAGCTGGAGAGTGGCGTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 72 bp TTGTGCAGATGTAAGACAACATTCCCCAGTTCTCTTTaGACCTGCTTGTGGTCCACCCCTTGGCTGGTTGGT +
Preference number: 6 (lower is better)
Translates to: LCRCKTTFPSSL*TCLWSTPWLVG
Trigger: ACCAACCAGCCAAGGGGTGGACCACAAGCAGGTCCAAAGAGAACTGGGGAATGTTGTCTTACATCTGCACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 72 bp AGACCCTCCTGTGTTCTGGTCATAGGACTGGTTGTATaGGATGGTTGGAGGGATCGTGTCATTTGCCCGATA +
Preference number: 6 (lower is better)
Translates to: RPSCVLVIGLVV*DGWRDRVICPI
Trigger: TATCGGGCAAATGACACGATCCCTCCAACCATCCCATACAACCAGTCCTATGACCAGAACACAGGAGGGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 72 bp GTCATTTGGCTGTTCCTGTGCCTCTCTGGGGTCACTTaGATTTGTTCGCAGGTCAGTGACTTGTCTTCCATC +
Preference number: 6 (lower is better)
Translates to: VIWLFLCLSGVT*ICSQVSDLSSI
Trigger: GATGGAAGACAAGTCACTGACCTGCGAACAAATCCAAGTGACCCCAGAGAGGCACAGGAACAGCCAAATGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 72 bp CTGGTCCCGAGGTTTTACAACGAAATGTGGCGGCTCTaGAACTGTCAAAGTAGCGGAAGCTTCAGCTTTCCC +
Preference number: 6 (lower is better)
Translates to: LVPRFYNEMWRL*NCQSSGSFSFP
Trigger: GGGAAAGCTGAAGCTTCCGCTACTTTGACAGTTCAAGAGCCGCCACATTTCGTTGTAAAACCTCGGGACCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 72 bp GCAAATGTTTCTGTTTTCACATTTTCTGCCGCCGTCTaGCAGCTGCTACCAGATGCATGGCTGAAGGCTTCT +
Preference number: 6 (lower is better)
Translates to: ANVSVFTFSAAV*QLLPDAWLKAS
Trigger: AGAAGCCTTCAGCCATGCATCTGGTAGCAGCTGGCAGACGGCGGCAGAAAATGTGAAAACAGAAACATTTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 72 bp TGGACCATTCCATTTTGTGTGTCTTCAGGAGGCGGTTaGCAAGTGACCAGGATTGCAGTCCCATTTCCATCA +
Preference number: 6 (lower is better)
Translates to: WTIPFCVSSGGG*QVTRIAVPFPS
Trigger: TGATGGAAATGGGACTGCAATCCTGGTCACTTGGCAACCGCCTCCTGAAGACACACAAAATGGAATGGTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 72 bp TGCATTTCTGCCATATTCCTTCGGCCCACATTTGCTTaGTCTCTTTGTCGGCTCCCTGATCCTCTTGATGAC +
Preference number: 6 (lower is better)
Translates to: CISAIFLRPTFA*SLCRLPDPLDD
Trigger: GTCATCAAGAGGATCAGGGAGCCGACAAAGAGAGCAAGCAAATGTGGGCCGAAGGAATATGGCAGAAATGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 72 bp TTCAAGTTTGGCTGCCACGATAAAGTGACCGTGTTTTaGCTGACATCTGTAACTTCGGGCTTTGAGGGGGCG +
Preference number: 6 (lower is better)
Translates to: FKFGCHDKVTVF*LTSVTSGFEGA
Trigger: CGCCCCCTCAAAGCCCGAAGTTACAGATGTCAGCAAAAACACGGTCACTTTATCGTGGCAGCCAAACTTGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 72 bp TTGGACCATTCCATTTTGTGTGTCTTCAGGAGGCGGTaGCCAAGTGACCAGGATTGCAGTCCCATTTCCATC +
Preference number: 6 (lower is better)
Translates to: LDHSILCVFRRR*PSDQDCSPISI
Trigger: GATGGAAATGGGACTGCAATCCTGGTCACTTGGCAACCGCCTCCTGAAGACACACAAAATGGAATGGTCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 72 bp GATGACATAGAGCTGGAGGAACTGGGGTCTCTAGGGTaGTTTGACGTTGGGAAAGTAGGTCTACAGTACGGA +
Preference number: 6 (lower is better)
Translates to: DDIELEELGSLG*FDVGKVGLQYG
Trigger: TCCGTACTGTAGACCTACTTTCCCAACGTCAAACAACCCTAGAGACCCCAGTTCCTCCAGCTCTATGTCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 72 bp GTACTTGCATTTCTGCCATATTCCTTCGGCCCACATTaGCTTGCTCTCTTTGTCGGCTCCCTGATCCTCTTG +
Preference number: 6 (lower is better)
Translates to: VLAFLPYSFGPH*LALFVGSLILL
Trigger: CAAGAGGATCAGGGAGCCGACAAAGAGAGCAAGCAAATGTGGGCCGAAGGAATATGGCAGAAATGCAAGTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS TCA 72 bp GCCACTCTCCAGCTGTTTGATCCGAGAATCTTGGGTTaGAACAAGGACTCCATCCTTCCTCCACAGAATTGT +
Preference number: 6 (lower is better)
Translates to: ATLQLFDPRILG*NKDSILPPQNC
Trigger: ACAATTCTGTGGAGGAAGGATGGAGTCCTTGTTTCAACCCAAGATTCTCGGATCAAACAGCTGGAGAGTGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS TCA 72 bp CATAGAGCTGGAGGAACTGGGGTCTCTAGGGTTGTTTaGCGTTGGGAAAGTAGGTCTACAGTACGGAAGAAT +
Preference number: 6 (lower is better)
Translates to: HRAGGTGVSRVV*RWESRSTVRKN
Trigger: ATTCTTCCGTACTGTAGACCTACTTTCCCAACGTCAAACAACCCTAGAGACCCCAGTTCCTCCAGCTCTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 72 bp CTCCTGTGTTCTGGTCATAGGACTGGTTGTATGGGATaGTTGGAGGGATCGTGTCATTTGCCCGATAATCTT +
Preference number: 6 (lower is better)
Translates to: LLCSGHRTGCMG*LEGSCHLPDNL
Trigger: AAGATTATCGGGCAAATGACACGATCCCTCCAACCATCCCATACAACCAGTCCTATGACCAGAACACAGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 90 bp AAGACCCTCCTGTGTTCTGGTCATAGGACTGGTTGTATGGGATGGTaGGAGGGATCGTGTCATTTGCCCGATAATCTTTGTTCAGCTTGT +
Preference number: 6 (lower is better)
Translates to: KTLLCSGHRTGCMGW*EGSCHLPDNLCSAC
Trigger: ACAAGCTGAACAAAGATTATCGGGCAAATGACACGATCCCTCCAACCATCCCATACAACCAGTCCTATGACCAGAACACAGGAGGGTCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 90 bp GATCCTCTTGATGACATAGAGCTGGAGGAACTGGGGTCTCTAGGGTaGTTTGACGTTGGGAAAGTAGGTCTACAGTACGGAAGAATATCC +
Preference number: 6 (lower is better)
Translates to: DPLDDIELEELGSLG*FDVGKVGLQYGRIS
Trigger: GGATATTCTTCCGTACTGTAGACCTACTTTCCCAACGTCAAACAACCCTAGAGACCCCAGTTCCTCCAGCTCTATGTCATCAAGAGGATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS TCA 72 bp TCGTATAGTGATTCTTTCATCTTTATCATCCAGGGGTaGGCCATCCTTTTTCCAGGAGATGGTGGGCTCTGG +
Preference number: 6 (lower is better)
Translates to: SYSDSFIFIIQG*AILFPGDGGLW
Trigger: CCAGAGCCCACCATCTCCTGGAAAAAGGATGGCTCACCCCTGGATGATAAAGATGAAAGAATCACTATACGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS TCA 72 bp AGCTTTCCCGACCATATTTTCTGCCACACAAGTGTATaGTCCCATGTCGCCAGCAGTCACCTTCCGAATTTT +
Preference number: 6 (lower is better)
Translates to: SFPDHIFCHTSV*SHVASSHLPNF
Trigger: AAAATTCGGAAGGTGACTGCTGGCGACATGGGATCATACACTTGTGTGGCAGAAAATATGGTCGGGAAAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 72 bp TTCATCCTGTTGCAAATACATCCGCGCAGGTGGCACTaGACAGGGCATTTCTTGATCATAGCTTTCATCTAC +
Preference number: 6 (lower is better)
Translates to: FILLQIHPRRWH*TGHFLIIAFIY
Trigger: GTAGATGAAAGCTATGATCAAGAAATGCCCTGTCCAGTGCCACCTGCGCGGATGTATTTGCAACAGGATGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 72 bp GAGACACCAAACCTTATATTCTTGGACCATTCCATTTaGTGTGTCTTCAGGAGGCGGTTGCCAAGTGACCAG +
Preference number: 6 (lower is better)
Translates to: ETPNLIFLDHSI*CVFRRRLPSDQ
Trigger: CTGGTCACTTGGCAACCGCCTCCTGAAGACACACAAAATGGAATGGTCCAAGAATATAAGGTTTGGTGTCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 72 bp ATACATCCGCGCAGGTGGCACTGGACAGGGCATTTCTaGATCATAGCTTTCATCTACGGACATGTTGTATTC +
Preference number: 6 (lower is better)
Translates to: IHPRRWHWTGHF*IIAFIYGHVVF
Trigger: GAATACAACATGTCCGTAGATGAAAGCTATGATCAAGAAATGCCCTGTCCAGTGCCACCTGCGCGGATGTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 90 bp CTTATATTCTTGGACCATTCCATTTTGTGTGTCTTCAGGAGGCGGTaGCCAAGTGACCAGGATTGCAGTCCCATTTCCATCATTCTTGGA +
Preference number: 6 (lower is better)
Translates to: LIFLDHSILCVFRRR*PSDQDCSPISIILG
Trigger: TCCAAGAATGATGGAAATGGGACTGCAATCCTGGTCACTTGGCAACCGCCTCCTGAAGACACACAAAATGGAATGGTCCAAGAATATAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 90 bp TTCATTACCGAGACACCAAACCTTATATTCTTGGACCATTCCATTTaGTGTGTCTTCAGGAGGCGGTTGCCAAGTGACCAGGATTGCAGT +
Preference number: 6 (lower is better)
Translates to: FITETPNLIFLDHSI*CVFRRRLPSDQDCS
Trigger: ACTGCAATCCTGGTCACTTGGCAACCGCCTCCTGAAGACACACAAAATGGAATGGTCCAAGAATATAAGGTTTGGTGTCTCGGTAATGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 72 bp CTGGTTGTATGGGATGGTTGGAGGGATCGTGTCATTTaGCCGATAATCTTTGTTCAGCTTGTTTTGCTCCAT +
Preference number: 6 (lower is better)
Translates to: LVVWDGWRDRVI*PIIFVQLVLLH
Trigger: ATGGAGCAAAACAAGCTGAACAAAGATTATCGGGCAAATGACACGATCCCTCCAACCATCCCATACAACCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 72 bp ATCTCCTCTTTCAAATCCCCCAAGTACTTGCATTTCTaGCATATTCCTTCGGCCCACATTTGCTTGCTCTCT +
Preference number: 6 (lower is better)
Translates to: ISSFKSPKYLHF*HIPSAHICLLS
Trigger: AGAGAGCAAGCAAATGTGGGCCGAAGGAATATGGCAGAAATGCAAGTACTTGGGGGATTTGAAAGAGGAGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 72 bp ATTCTGCACTGTCATCCACAGTCACTGCCAAATTACTaGGTCTCTTCACAAACGATGGTCTCTCTAAAACGG +
Preference number: 6 (lower is better)
Translates to: ILHCHPQSLPNY*VSSQTMVSLKR
Trigger: CCGTTTTAGAGAGACCATCGTTTGTGAAGAGACCCAGTAATTTGGCAGTGACTGTGGATGACAGTGCAGAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 72 bp TCACTTCAAAAACTAACCACTCCGATTCACCATGGCTaGCTCCAGATGGGCGGTAGAGAATTTTATAGCCTT +
Preference number: 6 (lower is better)
Translates to: SLQKLTTPIHHG*LQMGGREFYSL
Trigger: AAGGCTATAAAATTCTCTACCGCCCATCTGGAGCCAGCCATGGTGAATCGGAGTGGTTAGTTTTTGAAGTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CCA 72 bp TGTGTTCTGGTCATAGGACTGGTTGTATGGGATGGTTaGAGGGATCGTGTCATTTGCCCGATAATCTTTGTT +
Preference number: 6 (lower is better)
Translates to: CVLVIGLVVWDG*RDRVICPIIFV
Trigger: AACAAAGATTATCGGGCAAATGACACGATCCCTCCAACCATCCCATACAACCAGTCCTATGACCAGAACACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS TCA 72 bp GCTGGTTGGTGGGACATCTTGCGTTTTCACTGGATCTaGTATTTGGCTTGGATCACTAATTCCATAGGCATT +
Preference number: 6 (lower is better)
Translates to: AGWWDILRFHWI*YLAWITNSIGI
Trigger: AATGCCTATGGAATTAGTGATCCAAGCCAAATATCAGATCCAGTGAAAACGCAAGATGTCCCACCAACCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS TCA 72 bp ACCGAGAAGGTCGAGCCATCGACTGTCTTGTTTATGTaGTACTTCGTTTCATTACCGAGACACCAAACCTTA +
Preference number: 6 (lower is better)
Translates to: TEKVEPSTVLFM*YFVSLPRHQTL
Trigger: TAAGGTTTGGTGTCTCGGTAATGAAACGAAGTATCACATAAACAAGACAGTCGATGGCTCGACCTTCTCGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 72 bp AGATGGGCGGTAGAGAATTTTATAGCCTTGAATATATaGAGATTGTTGGTCCACCGTCCAGTGCACTTCGAC +
Preference number: 6 (lower is better)
Translates to: RWAVENFIALNI*RLLVHRPVHFD
Trigger: GTCGAAGTGCACTGGACGGTGGACCAACAATCTCAATATATTCAAGGCTATAAAATTCTCTACCGCCCATCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 72 bp CTCACATTTAAATTCTGCACTGTCATCCACAGTCACTaGCAAATTACTGGGTCTCTTCACAAACGATGGTCT +
Preference number: 6 (lower is better)
Translates to: LTFKFCTVIHSH*QITGSLHKRWS
Trigger: AGACCATCGTTTGTGAAGAGACCCAGTAATTTGGCAGTGACTGTGGATGACAGTGCAGAATTTAAATGTGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS GCA 72 bp TATTTGGCTTGGATCACTAATTCCATAGGCATTTGCTaGCCTCACCAGGAAAAGGTAAATGGCGTTAGGTTT +
Preference number: 6 (lower is better)
Translates to: YLAWITNSIGIC*PHQEKVNGVRF
Trigger: AAACCTAACGCCATTTACCTTTTCCTGGTGAGGGCAGCAAATGCCTATGGAATTAGTGATCCAAGCCAAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2
CDS CAA 90 bp TATGTGATACTTCGTTTCATTACCGAGACACCAAACCTTATATTCTaGGACCATTCCATTTTGTGTGTCTTCAGGAGGCGGTTGCCAAGT +
Preference number: 6 (lower is better)
Translates to: YVILRFITETPNLIF*DHSILCVFRRRLPS
Trigger: ACTTGGCAACCGCCTCCTGAAGACACACAAAATGGAATGGTCCAAGAATATAAGGTTTGGTGTCTCGGTAATGAAACGAAGTATCACATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023600.8
ENSMUST00000232205.2