Pregenerated sensors for RNPS1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034681Ensembl transcript IDs: ENSMUST00000088512.13, ENSMUST00000115371.9, ENSMUST00000163717.2
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TGCACAGGTGTGGCACAGCGGGGGCTAGACCAGGCTGTCTGGTTCTaGGTCATCTGTGGAAATCCGTGTGCTGCCATAGGTTCCAGCTGG | + |
|
Preference number: 1 (lower is better) Translates to: CTGVAQRGLDQAVWF*VICGNPCAAIGSSW Trigger: CCAGCTGGAACCTATGGCAGCACACGGATTTCCACAGATGACCCAGAACCAGACAGCCTGGTCTAGCCCCCGCTGTGCCACACCTGTGCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| 3UTR GCA 90 bp | AGACCAGGCTGTCTGGTTCTGGGTCATCTGTGGAAATCCGTGTGCTaGCATAGGTTCCAGCTGGCTCTGCTACCAGCCTATCAAGAACTG | + |
|
Preference number: 1 (lower is better) Translates to: RPGCLVLGHLWKSVC*HRFQLALLPAYQEL Trigger: CAGTTCTTGATAGGCTGGTAGCAGAGCCAGCTGGAACCTATGGCAGCACACGGATTTCCACAGATGACCCAGAACCAGACAGCCTGGTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| 3UTR GCA 90 bp | GCTAGACCAGGCTGTCTGGTTCTGGGTCATCTGTGGAAATCCGTGTaGTGCCATAGGTTCCAGCTGGCTCTGCTACCAGCCTATCAAGAA | + |
|
Preference number: 1 (lower is better) Translates to: ARPGCLVLGHLWKSV*CHRFQLALLPAYQE Trigger: TTCTTGATAGGCTGGTAGCAGAGCCAGCTGGAACCTATGGCAGCACACGGATTTCCACAGATGACCCAGAACCAGACAGCCTGGTCTAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| 3UTR TCA 90 bp | GCTGCCATAGGTTCCAGCTGGCTCTGCTACCAGCCTATCAAGAACTaGAGGGATGAACTTTCTAGCCAGAAAACTACAGGGCACCTCTAT | + |
|
Preference number: 1 (lower is better) Translates to: AAIGSSWLCYQPIKN*RDELSSQKTTGHLY Trigger: ATAGAGGTGCCCTGTAGTTTTCTGGCTAGAAAGTTCATCCCTTCAGTTCTTGATAGGCTGGTAGCAGAGCCAGCTGGAACCTATGGCAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| 3UTR-3UTR CCA 90 bp | GGTCGGCCGAACAGAAGAGCAGTGTGGTCCTTTGCACAGGTGTGGCACAGCGGGGCCATAGGTTCCAGCTaGCTCTGCTACCAGCCTATC | + |
|
Preference number: 2 (lower is better) Translates to: GRPNRRAVWSFAQVWHSGAIGSS*LCYQPI Trigger: GATAGGCTGGTAGCAGAGCCAGCTGGAACCTATGGC...CCCGCTGTGCCACACCTGTGCAAAGGACCACACTGCTCTTCTGTTCGGCCGACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| 3UTR-3UTR CCA 90 bp | GTTGAAGCGTACTCAGCAGGGCATGGTCGGCCGAACAGAAGAGCAGTGTGGTCCCAGGCTGTCTGGTTCTaGGTCATCTGTGGAAATCCG | + |
|
Preference number: 2 (lower is better) Translates to: VEAYSAGHGRPNRRAVWSQAVWF*VICGNP Trigger: CGGATTTCCACAGATGACCCAGAACCAGACAGCCTG...GGACCACACTGCTCTTCTGTTCGGCCGACCATGCCCTGCTGAGTACGCTTCAAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| 3UTR-3UTR TCA 90 bp | GGTCGGCCGAACAGAAGAGCAGTGTGGTCCTTTGCACAGGTGTGGCACAGCGGGCAGCCTATCAAGAACTaGAGGGATGAACTTTCTAGC | + |
|
Preference number: 2 (lower is better) Translates to: GRPNRRAVWSFAQVWHSGQPIKN*RDELSS Trigger: GCTAGAAAGTTCATCCCTTCAGTTCTTGATAGGCTG...CCCGCTGTGCCACACCTGTGCAAAGGACCACACTGCTCTTCTGTTCGGCCGACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| 3UTR-3UTR CCA 90 bp | GGTCGGCCGAACAGAAGAGCAGTGTGGTCCTTTGCACAGGTGTGGCACAGCGGGCTACAGACCCTCACTTaGCTAGAGAAAAGGACAAAA | + |
|
Preference number: 2 (lower is better) Translates to: GRPNRRAVWSFAQVWHSGLQTLT*LEKRTK Trigger: TTTTGTCCTTTTCTCTAGCCAAGTGAGGGTCTGTAG...CCCGCTGTGCCACACCTGTGCAAAGGACCACACTGCTCTTCTGTTCGGCCGACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| 3UTR-3UTR CCA 90 bp | GTTGAAGCGTACTCAGCAGGGCATGGTCGGCCGAACAGAAGAGCAGTGTGGTCCCTACAGACCCTCACTTaGCTAGAGAAAAGGACAAAA | + |
|
Preference number: 2 (lower is better) Translates to: VEAYSAGHGRPNRRAVWSLQTLT*LEKRTK Trigger: TTTTGTCCTTTTCTCTAGCCAAGTGAGGGTCTGTAG...GGACCACACTGCTCTTCTGTTCGGCCGACCATGCCCTGCTGAGTACGCTTCAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| 3UTR-3UTR TCA 90 bp | ACTGCCAAGGTTAACCTGCAACATCACCATGAATGGCAGGTGACAACGGGGTGGCAGCCTATCAAGAACTaGAGGGATGAACTTTCTAGC | + |
|
Preference number: 2 (lower is better) Translates to: TAKVNLQHHHEWQVTTGWQPIKN*RDELSS Trigger: GCTAGAAAGTTCATCCCTTCAGTTCTTGATAGGCTG...CCACCCCGTTGTCACCTGCCATTCATGGTGATGTTGCAGGTTAACCTTGGCAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| 3UTR-3UTR CCA 90 bp | AAGCCAGAACCCTTCTGTAGAGGAGATATCTCAACTGCTGTACCCAGTAAGGGACTACAGACCCTCACTTaGCTAGAGAAAAGGACAAAA | + |
|
Preference number: 2 (lower is better) Translates to: KPEPFCRGDISTAVPSKGLQTLT*LEKRTK Trigger: TTTTGTCCTTTTCTCTAGCCAAGTGAGGGTCTGTAG...TCCCTTACTGGGTACAGCAGTTGAGATATCTCCTCTACAGAAGGGTTCTGGCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| 3UTR GCA 72 bp | GCATGGTCGGCCGAACAGAAGAGCAGTGTGGTCCTTTaGACAGGTGTGGCACAGCGGGGGCTAGACCAGGCT | + |
|
Preference number: 3 (lower is better) Translates to: AWSAEQKSSVVL*TGVAQRGLDQA Trigger: AGCCTGGTCTAGCCCCCGCTGTGCCACACCTGTGCAAAGGACCACACTGCTCTTCTGTTCGGCCGACCATGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| 3UTR CCA 72 bp | GTGGCACAGCGGGGGCTAGACCAGGCTGTCTGGTTCTaGGTCATCTGTGGAAATCCGTGTGCTGCCATAGGT | + |
|
Preference number: 3 (lower is better) Translates to: VAQRGLDQAVWF*VICGNPCAAIG Trigger: ACCTATGGCAGCACACGGATTTCCACAGATGACCCAGAACCAGACAGCCTGGTCTAGCCCCCGCTGTGCCAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| 3UTR GCA 72 bp | GGCTGTCTGGTTCTGGGTCATCTGTGGAAATCCGTGTaGTGCCATAGGTTCCAGCTGGCTCTGCTACCAGCC | + |
|
Preference number: 3 (lower is better) Translates to: GCLVLGHLWKSV*CHRFQLALLPA Trigger: GGCTGGTAGCAGAGCCAGCTGGAACCTATGGCAGCACACGGATTTCCACAGATGACCCAGAACCAGACAGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| 3UTR CCA 72 bp | GGGGCTAGACCAGGCTGTCTGGTTCTGGGTCATCTGTaGAAATCCGTGTGCTGCCATAGGTTCCAGCTGGCT | + |
|
Preference number: 3 (lower is better) Translates to: GARPGCLVLGHL*KSVCCHRFQLA Trigger: AGCCAGCTGGAACCTATGGCAGCACACGGATTTCCACAGATGACCCAGAACCAGACAGCCTGGTCTAGCCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| 3UTR TCA 72 bp | CCAAGGTTAACCTGCAACATCACCATGAATGGCAGGTaGCAACGGGGTGGGGTAGGTTTCATGAGGACCCTG | + |
|
Preference number: 3 (lower is better) Translates to: PRLTCNITMNGR*QRGGVGFMRTL Trigger: CAGGGTCCTCATGAAACCTACCCCACCCCGTTGTCACCTGCCATTCATGGTGATGTTGCAGGTTAACCTTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| 3UTR TCA 72 bp | CCAGAAAACTACAGGGCACCTCTATGGGAGCAGCCGTaGACCAACAGTAGCTCTACAAGCCAGAACCCTTCT | + |
|
Preference number: 3 (lower is better) Translates to: PENYRAPLWEQP*TNSSSTSQNPS Trigger: AGAAGGGTTCTGGCTTGTAGAGCTACTGTTGGTTCACGGCTGCTCCCATAGAGGTGCCCTGTAGTTTTCTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| 3UTR CCA 72 bp | CACACTGCCAAGGTTAACCTGCAACATCACCATGAATaGCAGGTGACAACGGGGTGGGGTAGGTTTCATGAG | + |
|
Preference number: 3 (lower is better) Translates to: HTAKVNLQHHHE*QVTTGWGRFHE Trigger: CTCATGAAACCTACCCCACCCCGTTGTCACCTGCCATTCATGGTGATGTTGCAGGTTAACCTTGGCAGTGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| 3UTR TCA 72 bp | GGTTCCAGCTGGCTCTGCTACCAGCCTATCAAGAACTaGAGGGATGAACTTTCTAGCCAGAAAACTACAGGG | + |
|
Preference number: 3 (lower is better) Translates to: GSSWLCYQPIKN*RDELSSQKTTG Trigger: CCCTGTAGTTTTCTGGCTAGAAAGTTCATCCCTTCAGTTCTTGATAGGCTGGTAGCAGAGCCAGCTGGAACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| 3UTR-3UTR CAA 90 bp | AAGCCAGAACCCTTCTGTAGAGGAGATATCTCAACTGCTGTACCCAGTAAGGGATCTACAGACCCTCACTaGGCTAGAGAAAAGGACAAA | + |
|
Preference number: 3 (lower is better) Translates to: KPEPFCRGDISTAVPSKGSTDPH*AREKDK Trigger: TTTGTCCTTTTCTCTAGCCAAGTGAGGGTCTGTAGA...TCCCTTACTGGGTACAGCAGTTGAGATATCTCCTCTACAGAAGGGTTCTGGCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| 3UTR CAA 72 bp | GGCATGGTCGGCCGAACAGAAGAGCAGTGTGGTCCTTaGCACAGGTGTGGCACAGCGGGGGCTAGACCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: GMVGRTEEQCGP*HRCGTAGARPG Trigger: GCCTGGTCTAGCCCCCGCTGTGCCACACCTGTGCAAAGGACCACACTGCTCTTCTGTTCGGCCGACCATGCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| CDS-3UTR TCA 90 bp | GTTGAAGCGTACTCAGCAGGGCATGGTCGGCCGAACAGAAGAGCAGTGTGGTCCCCTCATCCGTGGGGGTaGCCTACGCCACATGGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: VEAYSAGHGRPNRRAVWSPHPWG*PTPHGR Trigger: CCTCCCATGTGGCGTAGGTCACCCCCACGGATGAGG...GGACCACACTGCTCTTCTGTTCGGCCGACCATGCCCTGCTGAGTACGCTTCAAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| CDS-3UTR TCA 90 bp | ATGGTCGGCCGAACAGAAGAGCAGTGTGGTCCTTTGCACAGGTGTGGCACAGCGCCTCATCCGTGGGGGTaGCCTACGCCACATGGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: MVGRTEEQCGPLHRCGTAPHPWG*PTPHGR Trigger: CCTCCCATGTGGCGTAGGTCACCCCCACGGATGAGG...CGCTGTGCCACACCTGTGCAAAGGACCACACTGCTCTTCTGTTCGGCCGACCAT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| CDS-3UTR CCA 90 bp | GGTCGGCCGAACAGAAGAGCAGTGTGGTCCTTTGCACAGGTGTGGCACAGCGGGCCACATGGGAGGTGGTaGAAGCATCCTCCTAGGGGG | + |
|
Preference number: 4 (lower is better) Translates to: GRPNRRAVWSFAQVWHSGPHGRW*KHPPRG Trigger: CCCCCTAGGAGGATGCTTCCACCACCTCCCATGTGG...CCCGCTGTGCCACACCTGTGCAAAGGACCACACTGCTCTTCTGTTCGGCCGACC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| CDS-3UTR CCA 90 bp | AGGTGTGGCACAGCGGGGGCTAGACCAGGCTGTCTGGTTCTGGGTCATCTGTGGAGGGGACCTGCGTCTTaGGGATCGAGACCTTCTCCT | + |
|
Preference number: 4 (lower is better) Translates to: RCGTAGARPGCLVLGHLWRGPAS*GSRPSP Trigger: AGGAGAAGGTCTCGATCCCCAAGACGCAGGTCCCCT...CCACAGATGACCCAGAACCAGACAGCCTGGTCTAGCCCCCGCTGTGCCACACCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| CDS-3UTR CCA 90 bp | GTTGAAGCGTACTCAGCAGGGCATGGTCGGCCGAACAGAAGAGCAGTGTGGTCCCCACATGGGAGGTGGTaGAAGCATCCTCCTAGGGGG | + |
|
Preference number: 4 (lower is better) Translates to: VEAYSAGHGRPNRRAVWSPHGRW*KHPPRG Trigger: CCCCCTAGGAGGATGCTTCCACCACCTCCCATGTGG...GGACCACACTGCTCTTCTGTTCGGCCGACCATGCCCTGCTGAGTACGCTTCAAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| CDS-3UTR GCA 90 bp | GGTCGGCCGAACAGAAGAGCAGTGTGGTCCTTTGCACAGGTGTGGCACAGCGGGTTCCGCTTGAAGCACTaGGTCTCTTCCGAGTCTTAT | + |
|
Preference number: 4 (lower is better) Translates to: GRPNRRAVWSFAQVWHSGFRLKH*VSSESY Trigger: ATAAGACTCGGAAGAGACGCAGTGCTTCAAGCGGAA...CCCGCTGTGCCACACCTGTGCAAAGGACCACACTGCTCTTCTGTTCGGCCGACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| CDS-3UTR TCA 90 bp | CAGAACCCTTCTGTAGAGGAGATATCTCAACTGCTGTACCCAGTAAGGGATCCTCCTCATCCGTGGGGGTaGCCTACGCCACATGGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: QNPSVEEISQLLYPVRDPPHPWG*PTPHGR Trigger: CCTCCCATGTGGCGTAGGTCACCCCCACGGATGAGG...AGGATCCCTTACTGGGTACAGCAGTTGAGATATCTCCTCTACAGAAGGGTTCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| CDS-3UTR GCA 90 bp | CGTACTCAGCAGGGCATGGTCGGCCGAACAGAAGAGCAGTGTGGTCCTTTGCACGTGAGCCTCCCAATGTaGACTTTGGTTGGTTTAGGT | + |
|
Preference number: 4 (lower is better) Translates to: RTQQGMVGRTEEQCGPLHVSLPM*TLVGLG Trigger: ACCTAAACCAACCAAAGTGCACATTGGGAGGCTCAC...GTGCAAAGGACCACACTGCTCTTCTGTTCGGCCGACCATGCCCTGCTGAGTACG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| CDS-3UTR CCA 90 bp | ATCTCAACTGCTGTACCCAGTAAGGGATCCTTCTCTACAGACCCTCACTTGGCTCCACATGGGAGGTGGTaGAAGCATCCTCCTAGGGGG | + |
|
Preference number: 4 (lower is better) Translates to: ISTAVPSKGSFSTDPHLAPHGRW*KHPPRG Trigger: CCCCCTAGGAGGATGCTTCCACCACCTCCCATGTGG...AGCCAAGTGAGGGTCTGTAGAGAAGGATCCCTTACTGGGTACAGCAGTTGAGAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| CDS-3UTR CCA 90 bp | GGCAATGTACACACTGCCAAGGTTAACCTGCAACATCACCATGAATGGCAGGTGGTGACCTACGCCACATaGGAGGTGGTGGAAGCATCC | + |
|
Preference number: 4 (lower is better) Translates to: GNVHTAKVNLQHHHEWQVVTYAT*EVVEAS Trigger: GGATGCTTCCACCACCTCCCATGTGGCGTAGGTCAC...CACCTGCCATTCATGGTGATGTTGCAGGTTAACCTTGGCAGTGTGTACATTGCC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| CDS-3UTR CCA 90 bp | ACTGCTGTACCCAGTAAGGGATCCTTCTCTACAGACCCTCACTTGGCTAGAGAAAGGGGACCTGCGTCTTaGGGATCGAGACCTTCTCCT | + |
|
Preference number: 4 (lower is better) Translates to: TAVPSKGSFSTDPHLARERGPAS*GSRPSP Trigger: AGGAGAAGGTCTCGATCCCCAAGACGCAGGTCCCCT...TTCTCTAGCCAAGTGAGGGTCTGTAGAGAAGGATCCCTTACTGGGTACAGCAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| CDS-3UTR CCA 90 bp | GTACCCAGTAAGGGATCCTTCTCTACAGACCCTCACTTGGCTAGAGAAAAGGACAGGGGACCTGCGTCTTaGGGATCGAGACCTTCTCCT | + |
|
Preference number: 4 (lower is better) Translates to: VPSKGSFSTDPHLAREKDRGPAS*GSRPSP Trigger: AGGAGAAGGTCTCGATCCCCAAGACGCAGGTCCCCT...GTCCTTTTCTCTAGCCAAGTGAGGGTCTGTAGAGAAGGATCCCTTACTGGGTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| CDS-3UTR TCA 90 bp | GGTCGGCCGAACAGAAGAGCAGTGTGGTCCTTTGCACAGGTGTGGCACAGCGGGAATATTTCCATGATATaGTCCTTGGTCACATTCCTG | + |
|
Preference number: 4 (lower is better) Translates to: GRPNRRAVWSFAQVWHSGNISMI*SLVTFL Trigger: CAGGAATGTGACCAAGGATCATATCATGGAAATATT...CCCGCTGTGCCACACCTGTGCAAAGGACCACACTGCTCTTCTGTTCGGCCGACC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| CDS-3UTR CCA 90 bp | AGCTCTACAAGCCAGAACCCTTCTGTAGAGGAGATATCTCAACTGCTGTACCCAGTGACCTACGCCACATaGGAGGTGGTGGAAGCATCC | + |
|
Preference number: 4 (lower is better) Translates to: SSTSQNPSVEEISQLLYPVTYAT*EVVEAS Trigger: GGATGCTTCCACCACCTCCCATGTGGCGTAGGTCAC...TGGGTACAGCAGTTGAGATATCTCCTCTACAGAAGGGTTCTGGCTTGTAGAGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| CDS-3UTR GCA 90 bp | ATCTCAACTGCTGTACCCAGTAAGGGATCCTTCTCTACAGACCCTCACTTGGCTTTCCGCTTGAAGCACTaGGTCTCTTCCGAGTCTTAT | + |
|
Preference number: 4 (lower is better) Translates to: ISTAVPSKGSFSTDPHLAFRLKH*VSSESY Trigger: ATAAGACTCGGAAGAGACGCAGTGCTTCAAGCGGAA...AGCCAAGTGAGGGTCTGTAGAGAAGGATCCCTTACTGGGTACAGCAGTTGAGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| CDS-3UTR GCA 90 bp | GGCAATGTACACACTGCCAAGGTTAACCTGCAACATCACCATGAATGGCAGGTGGTGAGCCTCCCAATGTaGACTTTGGTTGGTTTAGGT | + |
|
Preference number: 4 (lower is better) Translates to: GNVHTAKVNLQHHHEWQVVSLPM*TLVGLG Trigger: ACCTAAACCAACCAAAGTGCACATTGGGAGGCTCAC...CACCTGCCATTCATGGTGATGTTGCAGGTTAACCTTGGCAGTGTGTACATTGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| CDS-3UTR GCA 90 bp | AGCTCTACAAGCCAGAACCCTTCTGTAGAGGAGATATCTCAACTGCTGTACCCATTCCGCTTGAAGCACTaGGTCTCTTCCGAGTCTTAT | + |
|
Preference number: 4 (lower is better) Translates to: SSTSQNPSVEEISQLLYPFRLKH*VSSESY Trigger: ATAAGACTCGGAAGAGACGCAGTGCTTCAAGCGGAA...TGGGTACAGCAGTTGAGATATCTCCTCTACAGAAGGGTTCTGGCTTGTAGAGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| CDS-3UTR TCA 90 bp | AGCTCTACAAGCCAGAACCCTTCTGTAGAGGAGATATCTCAACTGCTGTACCCAAATATTTCCATGATATaGTCCTTGGTCACATTCCTG | + |
|
Preference number: 4 (lower is better) Translates to: SSTSQNPSVEEISQLLYPNISMI*SLVTFL Trigger: CAGGAATGTGACCAAGGATCATATCATGGAAATATT...TGGGTACAGCAGTTGAGATATCTCCTCTACAGAAGGGTTCTGGCTTGTAGAGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| CDS-3UTR CAA 90 bp | AGGTGTGGCACAGCGGGGGCTAGACCAGGCTGTCTGGTTCTGGGTCATCTGTGGTTAGGTGGTTTGGATTaGGAGCGGGAGCGCCGCCTG | + |
|
Preference number: 5 (lower is better) Translates to: RCGTAGARPGCLVLGHLWLGGLD*ERERRL Trigger: CAGGCGGCGCTCCCGCTCCAAATCCAAACCACCTAA...CCACAGATGACCCAGAACCAGACAGCCTGGTCTAGCCCCCGCTGTGCCACACCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| CDS-3UTR CAA 90 bp | GGTCGGCCGAACAGAAGAGCAGTGTGGTCCTTTGCACAGGTGTGGCACAGCGGGTTAGGTGGTTTGGATTaGGAGCGGGAGCGCCGCCTG | + |
|
Preference number: 5 (lower is better) Translates to: GRPNRRAVWSFAQVWHSGLGGLD*ERERRL Trigger: CAGGCGGCGCTCCCGCTCCAAATCCAAACCACCTAA...CCCGCTGTGCCACACCTGTGCAAAGGACCACACTGCTCTTCTGTTCGGCCGACC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| CDS-3UTR CAA 90 bp | GGTCGGCCGAACAGAAGAGCAGTGTGGTCCTTTGCACAGGTGTGGCACAGCGGGGATCGGTCCTTGCGTTaGGTAGGAGAAGGAGCCCTA | + |
|
Preference number: 5 (lower is better) Translates to: GRPNRRAVWSFAQVWHSGDRSLR*VGEGAL Trigger: TAGGGCTCCTTCTCCTACCAAACGCAAGGACCGATC...CCCGCTGTGCCACACCTGTGCAAAGGACCACACTGCTCTTCTGTTCGGCCGACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088512.13 ENSMUST00000163717.2 |
||
| CDS-3UTR CAA 90 bp | AAGCCAGAACCCTTCTGTAGAGGAGATATCTCAACTGCTGTACCCAGTAAGGGATTAGGTGGTTTGGATTaGGAGCGGGAGCGCCGCCTG | + |
|
Preference number: 5 (lower is better) Translates to: KPEPFCRGDISTAVPSKGLGGLD*ERERRL Trigger: CAGGCGGCGCTCCCGCTCCAAATCCAAACCACCTAA...TCCCTTACTGGGTACAGCAGTTGAGATATCTCCTCTACAGAAGGGTTCTGGCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| CDS-3UTR CAA 90 bp | CGTACTCAGCAGGGCATGGTCGGCCGAACAGAAGAGCAGTGTGGTCCTTTGCACCTCTTGGCCATCAATTaGTCCTCCATCCATGTGTTT | + |
|
Preference number: 5 (lower is better) Translates to: RTQQGMVGRTEEQCGPLHLLAIN*SSIHVF Trigger: AAACACATGGATGGAGGACAAATTGATGGCCAAGAG...GTGCAAAGGACCACACTGCTCTTCTGTTCGGCCGACCATGCCCTGCTGAGTACG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| CDS-3UTR CAA 90 bp | ACTGCTGTACCCAGTAAGGGATCCTTCTCTACAGACCCTCACTTGGCTAGAGAAGATCGGTCCTTGCGTTaGGTAGGAGAAGGAGCCCTA | + |
|
Preference number: 5 (lower is better) Translates to: TAVPSKGSFSTDPHLAREDRSLR*VGEGAL Trigger: TAGGGCTCCTTCTCCTACCAAACGCAAGGACCGATC...TTCTCTAGCCAAGTGAGGGTCTGTAGAGAAGGATCCCTTACTGGGTACAGCAGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088512.13 ENSMUST00000163717.2 |
||
| CDS-3UTR CAA 90 bp | ATCTCAACTGCTGTACCCAGTAAGGGATCCTTCTCTACAGACCCTCACTTGGCTTCTCTTTTAGGTGGTTaGGATTTGGAGCGGGAGCGC | + |
|
Preference number: 5 (lower is better) Translates to: ISTAVPSKGSFSTDPHLASLLGG*DLERER Trigger: GCGCTCCCGCTCCAAATCCAAACCACCTAAAAGAGA...AGCCAAGTGAGGGTCTGTAGAGAAGGATCCCTTACTGGGTACAGCAGTTGAGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| CDS-3UTR CAA 90 bp | ACTGCTGTACCCAGTAAGGGATCCTTCTCTACAGACCCTCACTTGGCTAGAGAATCTCTTTTAGGTGGTTaGGATTTGGAGCGGGAGCGC | + |
|
Preference number: 5 (lower is better) Translates to: TAVPSKGSFSTDPHLARESLLGG*DLERER Trigger: GCGCTCCCGCTCCAAATCCAAACCACCTAAAAGAGA...TTCTCTAGCCAAGTGAGGGTCTGTAGAGAAGGATCCCTTACTGGGTACAGCAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| CDS-3UTR CAA 90 bp | AGTAGCTCTACAAGCCAGAACCCTTCTGTAGAGGAGATATCTCAACTGCTGTACTCTCTTTTAGGTGGTTaGGATTTGGAGCGGGAGCGC | + |
|
Preference number: 5 (lower is better) Translates to: SSSTSQNPSVEEISQLLYSLLGG*DLERER Trigger: GCGCTCCCGCTCCAAATCCAAACCACCTAAAAGAGA...GTACAGCAGTTGAGATATCTCCTCTACAGAAGGGTTCTGGCTTGTAGAGCTACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| CDS-3UTR CAA 90 bp | GGCAATGTACACACTGCCAAGGTTAACCTGCAACATCACCATGAATGGCAGGTGCTCTTGGCCATCAATTaGTCCTCCATCCATGTGTTT | + |
|
Preference number: 5 (lower is better) Translates to: GNVHTAKVNLQHHHEWQVLLAIN*SSIHVF Trigger: AAACACATGGATGGAGGACAAATTGATGGCCAAGAG...CACCTGCCATTCATGGTGATGTTGCAGGTTAACCTTGGCAGTGTGTACATTGCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||
| CDS-3UTR CAA 90 bp | GTACCCAGTAAGGGATCCTTCTCTACAGACCCTCACTTGGCTAGAGAAAAGGACCTCTTGGCCATCAATTaGTCCTCCATCCATGTGTTT | + |
|
Preference number: 5 (lower is better) Translates to: VPSKGSFSTDPHLAREKDLLAIN*SSIHVF Trigger: AAACACATGGATGGAGGACAAATTGATGGCCAAGAG...GTCCTTTTCTCTAGCCAAGTGAGGGTCTGTAGAGAAGGATCCCTTACTGGGTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088512.13 ENSMUST00000115371.9 ENSMUST00000163717.2 |
||