Pregenerated sensors for RNPC3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027981Ensembl transcript IDs: ENSMUST00000092154.10, ENSMUST00000106535.2, ENSMUST00000106536.8, ENSMUST00000153853.8
Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAATTGGATATAACACAAAGTAGGAAGCATGTTCCTGAATTAGGTTaGAGAAATCCACATATACAAGAAATATTACCACACTCCGTGGTC | + |
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Preference number: 1 (lower is better) Translates to: KLDITQSRKHVPELG*RNPHIQEILPHSVV Trigger: GACCACGGAGTGTGGTAATATTTCTTGTATATGTGGATTTCTTCAACCTAATTCAGGAACATGCTTCCTACTTTGTGTTATATCCAATTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| 3UTR CAA 90 bp | TGGGGTTACTGGTCACCCACCTCAGAAATACTGACTCAGAAACTCTaGAAGGGAAGGGCCAGCAATCTGTTTTTAATCAAGCTCTCCAAG | + |
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Preference number: 2 (lower is better) Translates to: WGYWSPTSEILTQKL*KGRASNLFLIKLSK Trigger: CTTGGAGAGCTTGATTAAAAACAGATTGCTGGCCCTTCCCTTCAAGAGTTTCTGAGTCAGTATTTCTGAGGTGGGTGACCAGTAACCCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000153853.8 |
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| 3UTR-3UTR TCA 90 bp | CTCTACTTTCTCTCTCCTCTTGACTGTGGATATTATGCTTTAAGTTCATGCCTTCCCTTGCTGATAGGATaGATGGGGTTACTGGTCACC | + |
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Preference number: 2 (lower is better) Translates to: LYFLSPLDCGYYALSSCLPLLIG*MGLLVT Trigger: GGTGACCAGTAACCCCATTCATCCTATCAGCAAGGG...AAGGCATGAACTTAAAGCATAATATCCACAGTCAAGAGGAGAGAGAAAGTAGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153853.8 |
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| 3UTR-3UTR TCA 90 bp | CTATGGCTCTACTTTCTCTCTCCTCTTGACTGTGGATATTATGCTTTAAGTTCATTTAAGTTCATGCCTTaGCCTCCCCACAGCAATGAA | + |
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Preference number: 2 (lower is better) Translates to: LWLYFLSPLDCGYYALSSFKFMP*PPHSNE Trigger: TTCATTGCTGTGGGGAGGTCAAGGCATGAACTTAAA...TGAACTTAAAGCATAATATCCACAGTCAAGAGGAGAGAGAAAGTAGAGCCATAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| 3UTR-3UTR TCA 90 bp | CTCTACTTTCTCTCTCCTCTTGACTGTGGATATTATGCTTTAAGTTCATGCCTTACCTCCCCACAGCAATaGACTATAAATTCTAAGACA | + |
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Preference number: 2 (lower is better) Translates to: LYFLSPLDCGYYALSSCLTSPQQ*TINSKT Trigger: TGTCTTAGAATTTATAGTTCATTGCTGTGGGGAGGT...AAGGCATGAACTTAAAGCATAATATCCACAGTCAAGAGGAGAGAGAAAGTAGAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| 3UTR-3UTR TCA 90 bp | CTATGGCTCTACTTTCTCTCTCCTCTTGACTGTGGATATTATGCTTTAAGTTCACTTTCTCTCTCCTCTTaGCTGTGGATATTATGCTTT | + |
|
Preference number: 2 (lower is better) Translates to: LWLYFLSPLDCGYYALSSLSLSS*LWILCF Trigger: AAAGCATAATATCCACAGTCAAGAGGAGAGAGAAAG...TGAACTTAAAGCATAATATCCACAGTCAAGAGGAGAGAGAAAGTAGAGCCATAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| 3UTR-3UTR CCA 90 bp | CTCTACTTTCTCTCTCCTCTTGACTGTGGATATTATGCTTTAAGTTCATGCCTTCCATTCCTTAGGAAATaGGAACAGCATACAATAGGA | + |
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Preference number: 2 (lower is better) Translates to: LYFLSPLDCGYYALSSCLPFLRK*EQHTIG Trigger: TCCTATTGTATGCTGTTCCCATTTCCTAAGGAATGG...AAGGCATGAACTTAAAGCATAATATCCACAGTCAAGAGGAGAGAGAAAGTAGAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| 3UTR CAA 90 bp | AATAAACAAAACCACTGCCCGAAAAGGATACAAGAAAGGATACACTaGTATGACAGTATTACAGCAGTATTTACGCAGGAATGCTTCTTT | + |
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Preference number: 2 (lower is better) Translates to: NKQNHCPKRIQERIH*YDSITAVFTQECFF Trigger: AAAGAAGCATTCCTGCGTAAATACTGCTGTAATACTGTCATACAAGTGTATCCTTTCTTGTATCCTTTTCGGGCAGTGGTTTTGTTTATT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 |
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| 3UTR GCA 72 bp | ATCTCTGGCTTGCCAGAAACTGCTCCTTGCAACGCTTaGAATTACGGCATGCTAAGAAACCCCTTGCTGATA | + |
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Preference number: 3 (lower is better) Translates to: ISGLPETAPCNA*NYGMLRNPLLI Trigger: TATCAGCAAGGGGTTTCTTAGCATGCCGTAATTGCAAGCGTTGCAAGGAGCAGTTTCTGGCAAGCCAGAGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153853.8 |
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| 3UTR GCA 72 bp | TACCTAAATATCTCTGGCTTGCCAGAAACTGCTCCTTaGAACGCTTGCAATTACGGCATGCTAAGAAACCCC | + |
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Preference number: 3 (lower is better) Translates to: YLNISGLPETAP*NACNYGMLRNP Trigger: GGGGTTTCTTAGCATGCCGTAATTGCAAGCGTTGCAAGGAGCAGTTTCTGGCAAGCCAGAGATATTTAGGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153853.8 |
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| 3UTR TCA 72 bp | AATTACGGCATGCTAAGAAACCCCTTGCTGATAGGATaGATGGGGTTACTGGTCACCCACCTCAGAAATACT | + |
|
Preference number: 3 (lower is better) Translates to: NYGMLRNPLLIG*MGLLVTHLRNT Trigger: AGTATTTCTGAGGTGGGTGACCAGTAACCCCATTCATCCTATCAGCAAGGGGTTTCTTAGCATGCCGTAATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000153853.8 |
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| 3UTR GCA 72 bp | TCTCCTCTTGACTGTGGATATTATGCTTTAAGTTCATaGCTTGACCTCCCCACAGCAATGAACTATAAATTC | + |
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Preference number: 3 (lower is better) Translates to: SPLDCGYYALSS*LDLPTAMNYKF Trigger: GAATTTATAGTTCATTGCTGTGGGGAGGTCAAGGCATGAACTTAAAGCATAATATCCACAGTCAAGAGGAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| 3UTR-3UTR CAA 90 bp | CTCTACTTTCTCTCTCCTCTTGACTGTGGATATTATGCTTTAAGTTCATGCCTTACTTTCTCTCTCCTCTaGACTGTGGATATTATGCTT | + |
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Preference number: 3 (lower is better) Translates to: LYFLSPLDCGYYALSSCLTFSLL*TVDIML Trigger: AAGCATAATATCCACAGTCAAGAGGAGAGAGAAAGT...AAGGCATGAACTTAAAGCATAATATCCACAGTCAAGAGGAGAGAGAAAGTAGAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| 3UTR-3UTR CAA 90 bp | CTCTACTTTCTCTCTCCTCTTGACTGTGGATATTATGCTTTAAGTTCATGCCTTCAACTTGACACAATGTaGAATTACCTGGGAAAAGTC | + |
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Preference number: 3 (lower is better) Translates to: LYFLSPLDCGYYALSSCLQLDTM*NYLGKV Trigger: GACTTTTCCCAGGTAATTCAACATTGTGTCAAGTTG...AAGGCATGAACTTAAAGCATAATATCCACAGTCAAGAGGAGAGAGAAAGTAGAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| 3UTR-3UTR CAA 90 bp | CTATGGCTCTACTTTCTCTCTCCTCTTGACTGTGGATATTATGCTTTAAGTTCAAGCAAATCCTTCTACTaGTCAAAGGCACTCAATCAA | + |
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Preference number: 3 (lower is better) Translates to: LWLYFLSPLDCGYYALSSSKSFY*SKALNQ Trigger: TTGATTGAGTGCCTTTGACAAGTAGAAGGATTTGCT...TGAACTTAAAGCATAATATCCACAGTCAAGAGGAGAGAGAAAGTAGAGCCATAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| 3UTR-3UTR CAA 90 bp | CTATGGCTCTACTTTCTCTCTCCTCTTGACTGTGGATATTATGCTTTAAGTTCAACATTGACATCTTCCTaGGTGGTTCTCTCTGTATTA | + |
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Preference number: 3 (lower is better) Translates to: LWLYFLSPLDCGYYALSSTLTSS*VVLSVL Trigger: TAATACAGAGAGAACCACCAAGGAAGATGTCAATGT...TGAACTTAAAGCATAATATCCACAGTCAAGAGGAGAGAGAAAGTAGAGCCATAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092154.10 ENSMUST00000153853.8 |
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| 3UTR-3UTR CAA 90 bp | CTCTACTTTCTCTCTCCTCTTGACTGTGGATATTATGCTTTAAGTTCATGCCTTAGAACACCACCTAAATaGGATATAACACAAAGTAGG | + |
|
Preference number: 3 (lower is better) Translates to: LYFLSPLDCGYYALSSCLRTPPK*DITQSR Trigger: CCTACTTTGTGTTATATCCAATTTAGGTGGTGTTCT...AAGGCATGAACTTAAAGCATAATATCCACAGTCAAGAGGAGAGAGAAAGTAGAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR TCA 90 bp | ATCCACATATACAAGAAATATTACCACACTCCGTGGTCAAGCAATTGTATATTCCGGCCGGCAGGTGCCTaGCGAGGAGGGTGCGGTCTC | + |
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Preference number: 4 (lower is better) Translates to: IHIYKKYYHTPWSSNCIFRPAGA*RGGCGL Trigger: GAGACCGCACCCTCCTCGTCAGGCACCTGCCGGCCG...GAATATACAATTGCTTGACCACGGAGTGTGGTAATATTTCTTGTATATGTGGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 |
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| CDS-3UTR TCA 90 bp | ATACAAGAAAGGATACACTTGTATGACAGTATTACAGCAGTATTTACGCAGGAACGGCCGGCAGGTGCCTaGCGAGGAGGGTGCGGTCTC | + |
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Preference number: 4 (lower is better) Translates to: IQERIHLYDSITAVFTQERPAGA*RGGCGL Trigger: GAGACCGCACCCTCCTCGTCAGGCACCTGCCGGCCG...TTCCTGCGTAAATACTGCTGTAATACTGTCATACAAGTGTATCCTTTCTTGTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 |
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| CDS-3UTR TCA 90 bp | TGTCAGAGTATTTGTCACAGCAACAAAAATGCAACTAGAACACCACCTAAATTGCAGGCGCCCCTTATCTaGCAGGACGCGCACCGACTG | + |
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Preference number: 4 (lower is better) Translates to: CQSICHSNKNATRTPPKLQAPLI*QDAHRL Trigger: CAGTCGGTGCGCGTCCTGTCAGATAAGGGGCGCCTG...CAATTTAGGTGGTGTTCTAGTTGCATTTTTGTTGCTGTGACAAATACTCTGACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR TCA 90 bp | CTCTACTTTCTCTCTCCTCTTGACTGTGGATATTATGCTTTAAGTTCATGCCTTGGCTCCTCAGGCGGTTaGGGGGATGTAGGTGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: LYFLSPLDCGYYALSSCLGSSGG*GDVGGR Trigger: CCTTCCACCTACATCCCCTCAACCGCCTGAGGAGCC...AAGGCATGAACTTAAAGCATAATATCCACAGTCAAGAGGAGAGAGAAAGTAGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR TCA 90 bp | CTATGGCTCTACTTTCTCTCTCCTCTTGACTGTGGATATTATGCTTTAAGTTCAGGCTCCTCAGGCGGTTaGGGGGATGTAGGTGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: LWLYFLSPLDCGYYALSSGSSGG*GDVGGR Trigger: CCTTCCACCTACATCCCCTCAACCGCCTGAGGAGCC...TGAACTTAAAGCATAATATCCACAGTCAAGAGGAGAGAGAAAGTAGAGCCATAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| 3UTR CAA 72 bp | TATCTCTGGCTTGCCAGAAACTGCTCCTTGCAACGCTaGCAATTACGGCATGCTAAGAAACCCCTTGCTGAT | + |
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Preference number: 4 (lower is better) Translates to: YLWLARNCSLQR*QLRHAKKPLAD Trigger: ATCAGCAAGGGGTTTCTTAGCATGCCGTAATTGCAAGCGTTGCAAGGAGCAGTTTCTGGCAAGCCAGAGATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153853.8 |
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| CDS-3UTR TCA 90 bp | ATACAAGAAAGGATACACTTGTATGACAGTATTACAGCAGTATTTACGCAGGAACAGGCGCCCCTTATCTaGCAGGACGCGCACCGACTG | + |
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Preference number: 4 (lower is better) Translates to: IQERIHLYDSITAVFTQEQAPLI*QDAHRL Trigger: CAGTCGGTGCGCGTCCTGTCAGATAAGGGGCGCCTG...TTCCTGCGTAAATACTGCTGTAATACTGTCATACAAGTGTATCCTTTCTTGTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR TCA 90 bp | TGTCACAGCAACAAAAATGCAACTAGAACACCACCTAAATTGGATATAACACAACAGGCGCCCCTTATCTaGCAGGACGCGCACCGACTG | + |
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Preference number: 4 (lower is better) Translates to: CHSNKNATRTPPKLDITQQAPLI*QDAHRL Trigger: CAGTCGGTGCGCGTCCTGTCAGATAAGGGGCGCCTG...TTGTGTTATATCCAATTTAGGTGGTGTTCTAGTTGCATTTTTGTTGCTGTGACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR TCA 90 bp | TGTCAGAGTATTTGTCACAGCAACAAAAATGCAACTAGAACACCACCTAAATTGGGCTCCTCAGGCGGTTaGGGGGATGTAGGTGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: CQSICHSNKNATRTPPKLGSSGG*GDVGGR Trigger: CCTTCCACCTACATCCCCTCAACCGCCTGAGGAGCC...CAATTTAGGTGGTGTTCTAGTTGCATTTTTGTTGCTGTGACAAATACTCTGACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR GCA 90 bp | CTATGGCTCTACTTTCTCTCTCCTCTTGACTGTGGATATTATGCTTTAAGTTCAAGGACGCGCACCGACTaGGCCCCGAAGTACTTCAGT | + |
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Preference number: 4 (lower is better) Translates to: LWLYFLSPLDCGYYALSSRTRTD*APKYFS Trigger: ACTGAAGTACTTCGGGGCGCAGTCGGTGCGCGTCCT...TGAACTTAAAGCATAATATCCACAGTCAAGAGGAGAGAGAAAGTAGAGCCATAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 |
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| CDS-3UTR GCA 90 bp | ATACAAGAAAGGATACACTTGTATGACAGTATTACAGCAGTATTTACGCAGGAAAGGACGCGCACCGACTaGGCCCCGAAGTACTTCAGT | + |
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Preference number: 4 (lower is better) Translates to: IQERIHLYDSITAVFTQERTRTD*APKYFS Trigger: ACTGAAGTACTTCGGGGCGCAGTCGGTGCGCGTCCT...TTCCTGCGTAAATACTGCTGTAATACTGTCATACAAGTGTATCCTTTCTTGTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 |
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| 3UTR CAA 72 bp | ATACCTAAATATCTCTGGCTTGCCAGAAACTGCTCCTaGCAACGCTTGCAATTACGGCATGCTAAGAAACCC | + |
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Preference number: 4 (lower is better) Translates to: IPKYLWLARNCS*QRLQLRHAKKP Trigger: GGGTTTCTTAGCATGCCGTAATTGCAAGCGTTGCAAGGAGCAGTTTCTGGCAAGCCAGAGATATTTAGGTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153853.8 |
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| CDS-3UTR TCA 90 bp | ACTGCCCGAAAAGGATACAAGAAAGGATACACTTGTATGACAGTATTACAGCAGGCAGATCGAGCAAACTaGACCACCATGGGTTTTCCA | + |
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Preference number: 4 (lower is better) Translates to: TARKGYKKGYTCMTVLQQADRAN*TTMGFP Trigger: TGGAAAACCCATGGTGGTTCAGTTTGCTCGATCTGC...CTGCTGTAATACTGTCATACAAGTGTATCCTTTCTTGTATCCTTTTCGGGCAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092154.10 ENSMUST00000153853.8 |
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| CDS-3UTR TCA 90 bp | TGTCAGAGTATTTGTCACAGCAACAAAAATGCAACTAGAACACCACCTAAATTGCCTAGAAGTTTCAGCTaGTGGAGTCTCGTCAGTGCC | + |
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Preference number: 4 (lower is better) Translates to: CQSICHSNKNATRTPPKLPRSFS*WSLVSA Trigger: GGCACTGACGAGACTCCATCAGCTGAAACTTCTAGG...CAATTTAGGTGGTGTTCTAGTTGCATTTTTGTTGCTGTGACAAATACTCTGACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR TCA 90 bp | ATACAAGAAAGGATACACTTGTATGACAGTATTACAGCAGTATTTACGCAGGAACCTAGAAGTTTCAGCTaGTGGAGTCTCGTCAGTGCC | + |
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Preference number: 4 (lower is better) Translates to: IQERIHLYDSITAVFTQEPRSFS*WSLVSA Trigger: GGCACTGACGAGACTCCATCAGCTGAAACTTCTAGG...TTCCTGCGTAAATACTGCTGTAATACTGTCATACAAGTGTATCCTTTCTTGTAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR TCA 90 bp | ATCCACATATACAAGAAATATTACCACACTCCGTGGTCAAGCAATTGTATATTCCCTAGAAGTTTCAGCTaGTGGAGTCTCGTCAGTGCC | + |
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Preference number: 4 (lower is better) Translates to: IHIYKKYYHTPWSSNCIFPRSFS*WSLVSA Trigger: GGCACTGACGAGACTCCATCAGCTGAAACTTCTAGG...GAATATACAATTGCTTGACCACGGAGTGTGGTAATATTTCTTGTATATGTGGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR TCA 90 bp | TGTCAGAGTATTTGTCACAGCAACAAAAATGCAACTAGAACACCACCTAAATTGGCAGATCGAGCAAACTaGACCACCATGGGTTTTCCA | + |
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Preference number: 4 (lower is better) Translates to: CQSICHSNKNATRTPPKLADRAN*TTMGFP Trigger: TGGAAAACCCATGGTGGTTCAGTTTGCTCGATCTGC...CAATTTAGGTGGTGTTCTAGTTGCATTTTTGTTGCTGTGACAAATACTCTGACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000092154.10 ENSMUST00000153853.8 |
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| CDS-3UTR TCA 90 bp | CTATGGCTCTACTTTCTCTCTCCTCTTGACTGTGGATATTATGCTTTAAGTTCACTTTTTCTCTGTATTTaGGGTGGAACATGGGGAGTG | + |
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Preference number: 4 (lower is better) Translates to: LWLYFLSPLDCGYYALSSLFLCI*GGTWGV Trigger: CACTCCCCATGTTCCACCTCAAATACAGAGAAAAAG...TGAACTTAAAGCATAATATCCACAGTCAAGAGGAGAGAGAAAGTAGAGCCATAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR TCA 90 bp | CTATGGCTCTACTTTCTCTCTCCTCTTGACTGTGGATATTATGCTTTAAGTTCAGCCAAATCCTGTATTTaGATCAAGTCCAGTGTCTGG | + |
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Preference number: 4 (lower is better) Translates to: LWLYFLSPLDCGYYALSSAKSCI*IKSSVW Trigger: CCAGACACTGGACTTGATTCAAATACAGGATTTGGC...TGAACTTAAAGCATAATATCCACAGTCAAGAGGAGAGAGAAAGTAGAGCCATAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR GCA 90 bp | CTATGGCTCTACTTTCTCTCTCCTCTTGACTGTGGATATTATGCTTTAAGTTCACAACGCTTTAGCGGCTaGTTTTTCATTTGGAAGTCC | + |
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Preference number: 4 (lower is better) Translates to: LWLYFLSPLDCGYYALSSQRFSG*FFIWKS Trigger: GGACTTCCAAATGAAAAAGCAGCCGCTAAAGCGTTG...TGAACTTAAAGCATAATATCCACAGTCAAGAGGAGAGAGAAAGTAGAGCCATAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR CCA 90 bp | CTCTACTTTCTCTCTCCTCTTGACTGTGGATATTATGCTTTAAGTTCATGCCTTTCTCTGTATTTGAGGTaGAACATGGGGAGTGAACTC | + |
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Preference number: 4 (lower is better) Translates to: LYFLSPLDCGYYALSSCLSLYLR*NMGSEL Trigger: GAGTTCACTCCCCATGTTCCACCTCAAATACAGAGA...AAGGCATGAACTTAAAGCATAATATCCACAGTCAAGAGGAGAGAGAAAGTAGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR CCA 90 bp | CTATGGCTCTACTTTCTCTCTCCTCTTGACTGTGGATATTATGCTTTAAGTTCATCTCTGTATTTGAGGTaGAACATGGGGAGTGAACTC | + |
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Preference number: 4 (lower is better) Translates to: LWLYFLSPLDCGYYALSSSLYLR*NMGSEL Trigger: GAGTTCACTCCCCATGTTCCACCTCAAATACAGAGA...TGAACTTAAAGCATAATATCCACAGTCAAGAGGAGAGAGAAAGTAGAGCCATAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR CCA 90 bp | ACTGCCCGAAAAGGATACAAGAAAGGATACACTTGTATGACAGTATTACAGCAGAAGGGGTGCATGCAATaGCATATAGTCCTCATACAT | + |
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Preference number: 4 (lower is better) Translates to: TARKGYKKGYTCMTVLQQKGCMQ*HIVLIH Trigger: ATGTATGAGGACTATATGCCATTGCATGCACCCCTT...CTGCTGTAATACTGTCATACAAGTGTATCCTTTCTTGTATCCTTTTCGGGCAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR GCA 90 bp | AAAGGATACACTTGTATGACAGTATTACAGCAGTATTTACGCAGGAATGCTTCTCAACGCTTTAGCGGCTaGTTTTTCATTTGGAAGTCC | + |
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Preference number: 4 (lower is better) Translates to: KGYTCMTVLQQYLRRNASQRFSG*FFIWKS Trigger: GGACTTCCAAATGAAAAAGCAGCCGCTAAAGCGTTG...AGAAGCATTCCTGCGTAAATACTGCTGTAATACTGTCATACAAGTGTATCCTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| 3UTR CAA 72 bp | AACCACTGCCCGAAAAGGATACAAGAAAGGATACACTaGTATGACAGTATTACAGCAGTATTTACGCAGGAA | + |
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Preference number: 4 (lower is better) Translates to: NHCPKRIQERIH*YDSITAVFTQE Trigger: TTCCTGCGTAAATACTGCTGTAATACTGTCATACAAGTGTATCCTTTCTTGTATCCTTTTCGGGCAGTGGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR TCA 90 bp | ATCCACATATACAAGAAATATTACCACACTCCGTGGTCAAGCAATTGTATATTCCTTTTTCTCTGTATTTaGGGTGGAACATGGGGAGTG | + |
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Preference number: 4 (lower is better) Translates to: IHIYKKYYHTPWSSNCIFLFLCI*GGTWGV Trigger: CACTCCCCATGTTCCACCTCAAATACAGAGAAAAAG...GAATATACAATTGCTTGACCACGGAGTGTGGTAATATTTCTTGTATATGTGGAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR TCA 90 bp | ATACAAGAAAGGATACACTTGTATGACAGTATTACAGCAGTATTTACGCAGGAACTTTTTCTCTGTATTTaGGGTGGAACATGGGGAGTG | + |
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Preference number: 4 (lower is better) Translates to: IQERIHLYDSITAVFTQELFLCI*GGTWGV Trigger: CACTCCCCATGTTCCACCTCAAATACAGAGAAAAAG...TTCCTGCGTAAATACTGCTGTAATACTGTCATACAAGTGTATCCTTTCTTGTAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR TCA 90 bp | CTATGGCTCTACTTTCTCTCTCCTCTTGACTGTGGATATTATGCTTTAAGTTCAAAGTCCAGTGTCTGGTaGATCAGAATTTTCTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: LWLYFLSPLDCGYYALSSKSSVW*IRIFFF Trigger: GAAGAAGAAAATTCTGATTCACCAGACACTGGACTT...TGAACTTAAAGCATAATATCCACAGTCAAGAGGAGAGAGAAAGTAGAGCCATAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR TCA 90 bp | ATACAAGAAAGGATACACTTGTATGACAGTATTACAGCAGTATTTACGCAGGAAGCCAAATCCTGTATTTaGATCAAGTCCAGTGTCTGG | + |
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Preference number: 4 (lower is better) Translates to: IQERIHLYDSITAVFTQEAKSCI*IKSSVW Trigger: CCAGACACTGGACTTGATTCAAATACAGGATTTGGC...TTCCTGCGTAAATACTGCTGTAATACTGTCATACAAGTGTATCCTTTCTTGTAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR TCA 90 bp | TGTCAGAGTATTTGTCACAGCAACAAAAATGCAACTAGAACACCACCTAAATTGAGCGAATATCAAACATaGTCCGCTGTGTTTCTGAAG | + |
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Preference number: 4 (lower is better) Translates to: CQSICHSNKNATRTPPKLSEYQT*SAVFLK Trigger: CTTCAGAAACACAGCGGATCATGTTTGATATTCGCT...CAATTTAGGTGGTGTTCTAGTTGCATTTTTGTTGCTGTGACAAATACTCTGACA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR CCA 90 bp | ATACAAGAAAGGATACACTTGTATGACAGTATTACAGCAGTATTTACGCAGGAATCTCTGTATTTGAGGTaGAACATGGGGAGTGAACTC | + |
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Preference number: 4 (lower is better) Translates to: IQERIHLYDSITAVFTQESLYLR*NMGSEL Trigger: GAGTTCACTCCCCATGTTCCACCTCAAATACAGAGA...TTCCTGCGTAAATACTGCTGTAATACTGTCATACAAGTGTATCCTTTCTTGTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR TCA 90 bp | TGTCACAGCAACAAAAATGCAACTAGAACACCACCTAAATTGGATATAACACAAAGCGAATATCAAACATaGTCCGCTGTGTTTCTGAAG | + |
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Preference number: 4 (lower is better) Translates to: CHSNKNATRTPPKLDITQSEYQT*SAVFLK Trigger: CTTCAGAAACACAGCGGATCATGTTTGATATTCGCT...TTGTGTTATATCCAATTTAGGTGGTGTTCTAGTTGCATTTTTGTTGCTGTGACA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR GCA 90 bp | TGTCAGAGTATTTGTCACAGCAACAAAAATGCAACTAGAACACCACCTAAATTGCGTCAGTGCCTTTATTaGTGCTTTTTCATTAGGGAA | + |
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Preference number: 4 (lower is better) Translates to: CQSICHSNKNATRTPPKLRQCLY*CFFIRE Trigger: TTCCCTAATGAAAAAGCAGCAATAAAGGCACTGACG...CAATTTAGGTGGTGTTCTAGTTGCATTTTTGTTGCTGTGACAAATACTCTGACA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR GCA 90 bp | TGTCACAGCAACAAAAATGCAACTAGAACACCACCTAAATTGGATATAACACAAATGGAGTCTCGTCAGTaGCTTTATTGCTGCTTTTTC | + |
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Preference number: 4 (lower is better) Translates to: CHSNKNATRTPPKLDITQMESRQ*LYCCFF Trigger: GAAAAAGCAGCAATAAAGGCACTGACGAGACTCCAT...TTGTGTTATATCCAATTTAGGTGGTGTTCTAGTTGCATTTTTGTTGCTGTGACA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR CCA 90 bp | ATCCACATATACAAGAAATATTACCACACTCCGTGGTCAAGCAATTGTATATTCAAGGGGTGCATGCAATaGCATATAGTCCTCATACAT | + |
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Preference number: 4 (lower is better) Translates to: IHIYKKYYHTPWSSNCIFKGCMQ*HIVLIH Trigger: ATGTATGAGGACTATATGCCATTGCATGCACCCCTT...GAATATACAATTGCTTGACCACGGAGTGTGGTAATATTTCTTGTATATGTGGAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR TCA 90 bp | TGTCACAGCAACAAAAATGCAACTAGAACACCACCTAAATTGGATATAACACAAAAGTCCAGTGTCTGGTaGATCAGAATTTTCTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: CHSNKNATRTPPKLDITQKSSVW*IRIFFF Trigger: GAAGAAGAAAATTCTGATTCACCAGACACTGGACTT...TTGTGTTATATCCAATTTAGGTGGTGTTCTAGTTGCATTTTTGTTGCTGTGACA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR GCA 90 bp | TGTCACAGCAACAAAAATGCAACTAGAACACCACCTAAATTGGATATAACACAACGTCAGTGCCTTTATTaGTGCTTTTTCATTAGGGAA | + |
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Preference number: 4 (lower is better) Translates to: CHSNKNATRTPPKLDITQRQCLY*CFFIRE Trigger: TTCCCTAATGAAAAAGCAGCAATAAAGGCACTGACG...TTGTGTTATATCCAATTTAGGTGGTGTTCTAGTTGCATTTTTGTTGCTGTGACA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR GCA 90 bp | TGTCACAGCAACAAAAATGCAACTAGAACACCACCTAAATTGGATATAACACAAGAATTTTGGGACACTTaGCAGAGCATTTACTATATT | + |
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Preference number: 4 (lower is better) Translates to: CHSNKNATRTPPKLDITQEFWDT*QSIYYI Trigger: AATATAGTAAATGCTCTGGCAAGTGTCCCAAAATTC...TTGTGTTATATCCAATTTAGGTGGTGTTCTAGTTGCATTTTTGTTGCTGTGACA 34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS CCA 90 bp | CTCCTCAGGCGGTTGAGGGGATGTAGGTGGAAGGGGTGCATGCAATaGCATATAGTCCTCATACATAGGAGGTCGTGCAGTAATCGGTCC | + |
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Preference number: 5 (lower is better) Translates to: LLRRLRGCRWKGCMQ*HIVLIHRRSCSNRS Trigger: GGACCGATTACTGCACGACCTCCTATGTATGAGGACTATATGCCATTGCATGCACCCCTTCCACCTACATCCCCTCAACCGCCTGAGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000106536.8 ENSMUST00000153853.8 |
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| CDS-3UTR CAA 90 bp | CTCTACTTTCTCTCTCCTCTTGACTGTGGATATTATGCTTTAAGTTCATGCCTTAGGCTCCTCAGGCGGTaGAGGGGATGTAGGTGGAAG | + |
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Preference number: 5 (lower is better) Translates to: LYFLSPLDCGYYALSSCLRLLRR*RGCRWK Trigger: CTTCCACCTACATCCCCTCAACCGCCTGAGGAGCCT...AAGGCATGAACTTAAAGCATAATATCCACAGTCAAGAGGAGAGAGAAAGTAGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR CAA 90 bp | TGTCACAGCAACAAAAATGCAACTAGAACACCACCTAAATTGGATATAACACAAAGGCTCCTCAGGCGGTaGAGGGGATGTAGGTGGAAG | + |
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Preference number: 5 (lower is better) Translates to: CHSNKNATRTPPKLDITQRLLRR*RGCRWK Trigger: CTTCCACCTACATCCCCTCAACCGCCTGAGGAGCCT...TTGTGTTATATCCAATTTAGGTGGTGTTCTAGTTGCATTTTTGTTGCTGTGACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR CAA 90 bp | ATACAAGAAAGGATACACTTGTATGACAGTATTACAGCAGTATTTACGCAGGAAAGGCTCCTCAGGCGGTaGAGGGGATGTAGGTGGAAG | + |
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Preference number: 5 (lower is better) Translates to: IQERIHLYDSITAVFTQERLLRR*RGCRWK Trigger: CTTCCACCTACATCCCCTCAACCGCCTGAGGAGCCT...TTCCTGCGTAAATACTGCTGTAATACTGTCATACAAGTGTATCCTTTCTTGTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR CAA 90 bp | ACTGCCCGAAAAGGATACAAGAAAGGATACACTTGTATGACAGTATTACAGCAGTGTGTCTCCAAATCTTaGTTAAATGCTGCAGGCATG | + |
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Preference number: 5 (lower is better) Translates to: TARKGYKKGYTCMTVLQQCVSKS*LNAAGM Trigger: CATGCCTGCAGCATTTAACAAAGATTTGGAGACACA...CTGCTGTAATACTGTCATACAAGTGTATCCTTTCTTGTATCCTTTTCGGGCAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR CAA 90 bp | ACTGCCCGAAAAGGATACAAGAAAGGATACACTTGTATGACAGTATTACAGCAGCATAAATTCTGCAGTTaGGTTCACCAGGTTCATAAC | + |
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Preference number: 5 (lower is better) Translates to: TARKGYKKGYTCMTVLQQHKFCS*VHQVHN Trigger: GTTATGAACCTGGTGAACCAAACTGCAGAATTTATG...CTGCTGTAATACTGTCATACAAGTGTATCCTTTCTTGTATCCTTTTCGGGCAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR CAA 90 bp | AAAGGATACACTTGTATGACAGTATTACAGCAGTATTTACGCAGGAATGCTTCTTCTTTTTCTCTGTATTaGAGGTGGAACATGGGGAGT | + |
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Preference number: 5 (lower is better) Translates to: KGYTCMTVLQQYLRRNASSFSLY*RWNMGS Trigger: ACTCCCCATGTTCCACCTCAAATACAGAGAAAAAGA...AGAAGCATTCCTGCGTAAATACTGCTGTAATACTGTCATACAAGTGTATCCTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR CAA 90 bp | TGTCAGAGTATTTGTCACAGCAACAAAAATGCAACTAGAACACCACCTAAATTGTGTGTCTCCAAATCTTaGTTAAATGCTGCAGGCATG | + |
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Preference number: 5 (lower is better) Translates to: CQSICHSNKNATRTPPKLCVSKS*LNAAGM Trigger: CATGCCTGCAGCATTTAACAAAGATTTGGAGACACA...CAATTTAGGTGGTGTTCTAGTTGCATTTTTGTTGCTGTGACAAATACTCTGACA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR CAA 90 bp | CTCTACTTTCTCTCTCCTCTTGACTGTGGATATTATGCTTTAAGTTCATGCCTTCATAAATTCTGCAGTTaGGTTCACCAGGTTCATAAC | + |
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Preference number: 5 (lower is better) Translates to: LYFLSPLDCGYYALSSCLHKFCS*VHQVHN Trigger: GTTATGAACCTGGTGAACCAAACTGCAGAATTTATG...AAGGCATGAACTTAAAGCATAATATCCACAGTCAAGAGGAGAGAGAAAGTAGAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR CAA 90 bp | ATACAAGAAAGGATACACTTGTATGACAGTATTACAGCAGTATTTACGCAGGAAAAGTCCAACAAAAGCTaGTCCTTTCATGCGTCCTTC | + |
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Preference number: 5 (lower is better) Translates to: IQERIHLYDSITAVFTQEKSNKS*SFHASF Trigger: GAAGGACGCATGAAAGGACAAGCTTTTGTTGGACTT...TTCCTGCGTAAATACTGCTGTAATACTGTCATACAAGTGTATCCTTTCTTGTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR CAA 90 bp | ATCCACATATACAAGAAATATTACCACACTCCGTGGTCAAGCAATTGTATATTCAAGTCCAACAAAAGCTaGTCCTTTCATGCGTCCTTC | + |
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Preference number: 5 (lower is better) Translates to: IHIYKKYYHTPWSSNCIFKSNKS*SFHASF Trigger: GAAGGACGCATGAAAGGACAAGCTTTTGTTGGACTT...GAATATACAATTGCTTGACCACGGAGTGTGGTAATATTTCTTGTATATGTGGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR CAA 90 bp | ATACAAGAAAGGATACACTTGTATGACAGTATTACAGCAGTATTTACGCAGGAATCTTTTTCTCTGTATTaGAGGTGGAACATGGGGAGT | + |
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Preference number: 5 (lower is better) Translates to: IQERIHLYDSITAVFTQESFSLY*RWNMGS Trigger: ACTCCCCATGTTCCACCTCAAATACAGAGAAAAAGA...TTCCTGCGTAAATACTGCTGTAATACTGTCATACAAGTGTATCCTTTCTTGTAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR CAA 90 bp | TGTCACAGCAACAAAAATGCAACTAGAACACCACCTAAATTGGATATAACACAATCTTTTTCTCTGTATTaGAGGTGGAACATGGGGAGT | + |
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Preference number: 5 (lower is better) Translates to: CHSNKNATRTPPKLDITQSFSLY*RWNMGS Trigger: ACTCCCCATGTTCCACCTCAAATACAGAGAAAAAGA...TTGTGTTATATCCAATTTAGGTGGTGTTCTAGTTGCATTTTTGTTGCTGTGACA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR CAA 90 bp | ATACAAGAAAGGATACACTTGTATGACAGTATTACAGCAGTATTTACGCAGGAATGTGTCTCCAAATCTTaGTTAAATGCTGCAGGCATG | + |
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Preference number: 5 (lower is better) Translates to: IQERIHLYDSITAVFTQECVSKS*LNAAGM Trigger: CATGCCTGCAGCATTTAACAAAGATTTGGAGACACA...TTCCTGCGTAAATACTGCTGTAATACTGTCATACAAGTGTATCCTTTCTTGTAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR CAA 90 bp | ATCCACATATACAAGAAATATTACCACACTCCGTGGTCAAGCAATTGTATATTCTGCCAAATCCTGTATTaGAATCAAGTCCAGTGTCTG | + |
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Preference number: 5 (lower is better) Translates to: IHIYKKYYHTPWSSNCIFCQILY*NQVQCL Trigger: CAGACACTGGACTTGATTCAAATACAGGATTTGGCA...GAATATACAATTGCTTGACCACGGAGTGTGGTAATATTTCTTGTATATGTGGAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR CAA 90 bp | TGTCACAGCAACAAAAATGCAACTAGAACACCACCTAAATTGGATATAACACAATGCCAAATCCTGTATTaGAATCAAGTCCAGTGTCTG | + |
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Preference number: 5 (lower is better) Translates to: CHSNKNATRTPPKLDITQCQILY*NQVQCL Trigger: CAGACACTGGACTTGATTCAAATACAGGATTTGGCA...TTGTGTTATATCCAATTTAGGTGGTGTTCTAGTTGCATTTTTGTTGCTGTGACA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR CAA 90 bp | TGTCACAGCAACAAAAATGCAACTAGAACACCACCTAAATTGGATATAACACAAGAGCATTTACTATATTaGCGAGGATTGTGCTTGATG | + |
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Preference number: 5 (lower is better) Translates to: CHSNKNATRTPPKLDITQEHLLY*RGLCLM Trigger: CATCAAGCACAATCCTCGCAAATATAGTAAATGCTC...TTGTGTTATATCCAATTTAGGTGGTGTTCTAGTTGCATTTTTGTTGCTGTGACA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS-3UTR CAA 90 bp | ATACAAGAAAGGATACACTTGTATGACAGTATTACAGCAGTATTTACGCAGGAAGAGCATTTACTATATTaGCGAGGATTGTGCTTGATG | + |
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Preference number: 5 (lower is better) Translates to: IQERIHLYDSITAVFTQEEHLLY*RGLCLM Trigger: CATCAAGCACAATCCTCGCAAATATAGTAAATGCTC...TTCCTGCGTAAATACTGCTGTAATACTGTCATACAAGTGTATCCTTTCTTGTAT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000153853.8 |
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| CDS TCA 72 bp | TCATCCTCATCTGGTAAGGGAGGCTCCTCAGGCGGTTaGGGGGATGTAGGTGGAAGGGGTGCATGCAATGGC | + |
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Preference number: 6 (lower is better) Translates to: SSSSGKGGSSGG*GDVGGRGACNG Trigger: GCCATTGCATGCACCCCTTCCACCTACATCCCCTCAACCGCCTGAGGAGCCTCCCTTACCAGATGAGGATGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000106536.8 ENSMUST00000153853.8 |
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| CDS CCA 72 bp | CGGTTGAGGGGATGTAGGTGGAAGGGGTGCATGCAATaGCATATAGTCCTCATACATAGGAGGTCGTGCAGT | + |
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Preference number: 6 (lower is better) Translates to: RLRGCRWKGCMQ*HIVLIHRRSCS Trigger: ACTGCACGACCTCCTATGTATGAGGACTATATGCCATTGCATGCACCCCTTCCACCTACATCCCCTCAACCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000092154.10 ENSMUST00000106535.2 ENSMUST00000106536.8 ENSMUST00000153853.8 |
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