Pregenerated sensors for RNLS (Mus musculus)
Ensembl gene IDs: ENSMUSG00000071573Ensembl transcript IDs: ENSMUST00000096114.13, ENSMUST00000163093.2
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | TTCTGGGCTTGGGTTATTTGTGACTTAGAAGCACCATTTTTCTCCAATAAGGATATGGTAGCAACTGGCTaGGGCAAACCCGGCAGAATG | + |
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Preference number: 4 (lower is better) Translates to: FWAWVICDLEAPFFSNKDMVATG*GKPGRM Trigger: CATTCTGCCGGGTTTGCCTCAGCCAGTTGCTACCAT...ATCCTTATTGGAGAAAAATGGTGCTTCTAAGTCACAAATAACCCAAGCCCAGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000096114.13 ENSMUST00000163093.2 |
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| CDS-3UTR CCA 90 bp | TTCTGGGCTTGGGTTATTTGTGACTTAGAAGCACCATTTTTCTCCAATAAGGATGCATATGGTAGCAACTaGCTGAGGCAAACCCGGCAG | + |
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Preference number: 4 (lower is better) Translates to: FWAWVICDLEAPFFSNKDAYGSN*LRQTRQ Trigger: CTGCCGGGTTTGCCTCAGCCAGTTGCTACCATATGC...ATCCTTATTGGAGAAAAATGGTGCTTCTAAGTCACAAATAACCCAAGCCCAGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000096114.13 ENSMUST00000163093.2 |
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| CDS-3UTR TCA 90 bp | AAAGTGAGGAAGAAATATAGCCTAAGAAGTTATCACTTTACTATGGGTGGTAGCGAGTCACACAGTGCTTaGGGGAGACTTCTGCACCTG | + |
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Preference number: 4 (lower is better) Translates to: KVRKKYSLRSYHFTMGGSESHSA*GRLLHL Trigger: CAGGTGCAGAAGTCTCCCTCAAGCACTGTGTGACTC...GCTACCACCCATAGTAAAGTGATAACTTCTTAGGCTATATTTCTTCCTCACTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096114.13 |
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| CDS-3UTR TCA 90 bp | AGAAAAGTGAGGAAGAAATATAGCCTAAGAAGTTATCACTTTACTATGGGTGGTGAGCAGGTGATGTACTaGGCTCCCAAGTCAGCTGTG | + |
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Preference number: 4 (lower is better) Translates to: RKVRKKYSLRSYHFTMGGEQVMY*APKSAV Trigger: CACAGCTGACTTGGGAGCTCAGTACATCACCTGCTC...ACCACCCATAGTAAAGTGATAACTTCTTAGGCTATATTTCTTCCTCACTTTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096114.13 |
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| CDS-3UTR TCA 90 bp | AAAGTGAGGAAGAAATATAGCCTAAGAAGTTATCACTTTACTATGGGTGGTAGCCTGGCCTCCAAGTGTTaGACTCCAAATGGGACAGTG | + |
|
Preference number: 4 (lower is better) Translates to: KVRKKYSLRSYHFTMGGSLASKC*TPNGTV Trigger: CACTGTCCCATTTGGAGTTCAACACTTGGAGGCCAG...GCTACCACCCATAGTAAAGTGATAACTTCTTAGGCTATATTTCTTCCTCACTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096114.13 ENSMUST00000163093.2 |
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| CDS-3UTR TCA 90 bp | AGAAAAGTGAGGAAGAAATATAGCCTAAGAAGTTATCACTTTACTATGGGTGGTATGGTAGCAACTGGCTaGGGCAAACCCGGCAGAATG | + |
|
Preference number: 4 (lower is better) Translates to: RKVRKKYSLRSYHFTMGGMVATG*GKPGRM Trigger: CATTCTGCCGGGTTTGCCTCAGCCAGTTGCTACCAT...ACCACCCATAGTAAAGTGATAACTTCTTAGGCTATATTTCTTCCTCACTTTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096114.13 ENSMUST00000163093.2 |
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| CDS-3UTR CCA 90 bp | AGAAAAGTGAGGAAGAAATATAGCCTAAGAAGTTATCACTTTACTATGGGTGGTGCATATGGTAGCAACTaGCTGAGGCAAACCCGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: RKVRKKYSLRSYHFTMGGAYGSN*LRQTRQ Trigger: CTGCCGGGTTTGCCTCAGCCAGTTGCTACCATATGC...ACCACCCATAGTAAAGTGATAACTTCTTAGGCTATATTTCTTCCTCACTTTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096114.13 ENSMUST00000163093.2 |
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| CDS-3UTR TCA 90 bp | AGAAAAGTGAGGAAGAAATATAGCCTAAGAAGTTATCACTTTACTATGGGTGGTGTGCATCGGGGATTATaGGGACTGCTGGCAGTAATC | + |
|
Preference number: 4 (lower is better) Translates to: RKVRKKYSLRSYHFTMGGVHRGL*GLLAVI Trigger: GATTACTGCCAGCAGTCCTCATAATCCCCGATGCAC...ACCACCCATAGTAAAGTGATAACTTCTTAGGCTATATTTCTTCCTCACTTTTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096114.13 |
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| CDS-3UTR TCA 90 bp | AAAGTGAGGAAGAAATATAGCCTAAGAAGTTATCACTTTACTATGGGTGGTAGCAATGAGGAGAGCAGGTaGTGTACTGAGCTCCCAAGT | + |
|
Preference number: 4 (lower is better) Translates to: KVRKKYSLRSYHFTMGGSNEESR*CTELPS Trigger: ACTTGGGAGCTCAGTACATCACCTGCTCTCCTCATT...GCTACCACCCATAGTAAAGTGATAACTTCTTAGGCTATATTTCTTCCTCACTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096114.13 |
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| CDS-3UTR TCA 90 bp | AGAAAAGTGAGGAAGAAATATAGCCTAAGAAGTTATCACTTTACTATGGGTGGTCTGGCCTCCAAGTGTTaGACTCCAAATGGGACAGTG | + |
|
Preference number: 4 (lower is better) Translates to: RKVRKKYSLRSYHFTMGGLASKC*TPNGTV Trigger: CACTGTCCCATTTGGAGTTCAACACTTGGAGGCCAG...ACCACCCATAGTAAAGTGATAACTTCTTAGGCTATATTTCTTCCTCACTTTTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096114.13 ENSMUST00000163093.2 |
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| CDS-3UTR TCA 90 bp | TTCTGGGCTTGGGTTATTTGTGACTTAGAAGCACCATTTTTCTCCAATAAGGATACACCAGGAAAGGCTTaGGATGAAGAGTCATCTGAC | + |
|
Preference number: 4 (lower is better) Translates to: FWAWVICDLEAPFFSNKDTPGKA*DEESSD Trigger: GTCAGATGACTCTTCATCTCAAGCCTTTCCTGGTGT...ATCCTTATTGGAGAAAAATGGTGCTTCTAAGTCACAAATAACCCAAGCCCAGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000096114.13 ENSMUST00000163093.2 |
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| CDS-3UTR TCA 90 bp | AAAGTGAGGAAGAAATATAGCCTAAGAAGTTATCACTTTACTATGGGTGGTAGCCCATTGAAGTTGGAGTaGGTAAATCCATCCCCTCCG | + |
|
Preference number: 4 (lower is better) Translates to: KVRKKYSLRSYHFTMGGSPLKLE*VNPSPP Trigger: CGGAGGGGATGGATTTACTCACTCCAACTTCAATGG...GCTACCACCCATAGTAAAGTGATAACTTCTTAGGCTATATTTCTTCCTCACTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096114.13 ENSMUST00000163093.2 |
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| CDS-3UTR GCA 90 bp | AGAAAAGTGAGGAAGAAATATAGCCTAAGAAGTTATCACTTTACTATGGGTGGTCTCCCAAGTCAGCTGTaGATCGGGGATTATGAGGAC | + |
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Preference number: 4 (lower is better) Translates to: RKVRKKYSLRSYHFTMGGLPSQL*IGDYED Trigger: GTCCTCATAATCCCCGATGCACAGCTGACTTGGGAG...ACCACCCATAGTAAAGTGATAACTTCTTAGGCTATATTTCTTCCTCACTTTTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096114.13 |
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| CDS-3UTR GCA 90 bp | TTCTGGGCTTGGGTTATTTGTGACTTAGAAGCACCATTTTTCTCCAATAAGGATGAGGTGCCACAAAGTTaGAATCTCCTTCCTTCCCTT | + |
|
Preference number: 4 (lower is better) Translates to: FWAWVICDLEAPFFSNKDEVPQS*NLLPSL Trigger: AAGGGAAGGAAGGAGATTGCAACTTTGTGGCACCTC...ATCCTTATTGGAGAAAAATGGTGCTTCTAAGTCACAAATAACCCAAGCCCAGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096114.13 |
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| CDS-3UTR TCA 90 bp | AAAGTGAGGAAGAAATATAGCCTAAGAAGTTATCACTTTACTATGGGTGGTAGCACACCAGGAAAGGCTTaGGATGAAGAGTCATCTGAC | + |
|
Preference number: 4 (lower is better) Translates to: KVRKKYSLRSYHFTMGGSTPGKA*DEESSD Trigger: GTCAGATGACTCTTCATCTCAAGCCTTTCCTGGTGT...GCTACCACCCATAGTAAAGTGATAACTTCTTAGGCTATATTTCTTCCTCACTTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096114.13 ENSMUST00000163093.2 |
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| CDS-3UTR TCA 90 bp | AGAAAAGTGAGGAAGAAATATAGCCTAAGAAGTTATCACTTTACTATGGGTGGTCCATTGAAGTTGGAGTaGGTAAATCCATCCCCTCCG | + |
|
Preference number: 4 (lower is better) Translates to: RKVRKKYSLRSYHFTMGGPLKLE*VNPSPP Trigger: CGGAGGGGATGGATTTACTCACTCCAACTTCAATGG...ACCACCCATAGTAAAGTGATAACTTCTTAGGCTATATTTCTTCCTCACTTTTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000096114.13 ENSMUST00000163093.2 |
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| CDS-3UTR GCA 90 bp | AAAGTGAGGAAGAAATATAGCCTAAGAAGTTATCACTTTACTATGGGTGGTAGCCTCACAGATTTCAGTTaGTCCCTCTGGCGTTCACTA | + |
|
Preference number: 4 (lower is better) Translates to: KVRKKYSLRSYHFTMGGSLTDFS*SLWRSL Trigger: TAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGAG...GCTACCACCCATAGTAAAGTGATAACTTCTTAGGCTATATTTCTTCCTCACTTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096114.13 ENSMUST00000163093.2 |
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| CDS-3UTR CCA 90 bp | TTCTGGGCTTGGGTTATTTGTGACTTAGAAGCACCATTTTTCTCCAATAAGGATCTTTCATTCCTTCAATaGGGGATGTCAGAGGCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: FWAWVICDLEAPFFSNKDLSFLQ*GMSEAS Trigger: TGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAG...ATCCTTATTGGAGAAAAATGGTGCTTCTAAGTCACAAATAACCCAAGCCCAGAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096114.13 |
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| CDS-3UTR CCA 90 bp | AAAGTGAGGAAGAAATATAGCCTAAGAAGTTATCACTTTACTATGGGTGGTAGCCAGAGCCAGTGTCTGTaGAGACTTCCCACTTGTTAT | + |
|
Preference number: 4 (lower is better) Translates to: KVRKKYSLRSYHFTMGGSQSQCL*RLPTCY Trigger: ATAACAAGTGGGAAGTCTCCACAGACACTGGCTCTG...GCTACCACCCATAGTAAAGTGATAACTTCTTAGGCTATATTTCTTCCTCACTTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096114.13 |
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| CDS-3UTR CCA 90 bp | AGAAAAGTGAGGAAGAAATATAGCCTAAGAAGTTATCACTTTACTATGGGTGGTCAGAATCTGAGGAGCTaGCATGGTGAGGATGACAAG | + |
|
Preference number: 4 (lower is better) Translates to: RKVRKKYSLRSYHFTMGGQNLRS*HGEDDK Trigger: CTTGTCATCCTCACCATGCCAGCTCCTCAGATTCTG...ACCACCCATAGTAAAGTGATAACTTCTTAGGCTATATTTCTTCCTCACTTTTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096114.13 |
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| CDS-3UTR TCA 90 bp | TTCTGGGCTTGGGTTATTTGTGACTTAGAAGCACCATTTTTCTCCAATAAGGATACTGAAGAAAATCCTTaGGGTGCCACAAAGTTGCAA | + |
|
Preference number: 4 (lower is better) Translates to: FWAWVICDLEAPFFSNKDTEENP*GATKLQ Trigger: TTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGT...ATCCTTATTGGAGAAAAATGGTGCTTCTAAGTCACAAATAACCCAAGCCCAGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096114.13 |
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| CDS-3UTR TCA 90 bp | AAAGTGAGGAAGAAATATAGCCTAAGAAGTTATCACTTTACTATGGGTGGTAGCGCTTTAAAACTTTCATaGCACTCAGGGCAGAGGAGA | + |
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Preference number: 4 (lower is better) Translates to: KVRKKYSLRSYHFTMGGSALKLS*HSGQRR Trigger: TCTCCTCTGCCCTGAGTGTCATGAAAGTTTTAAAGC...GCTACCACCCATAGTAAAGTGATAACTTCTTAGGCTATATTTCTTCCTCACTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096114.13 ENSMUST00000163093.2 |
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| CDS-3UTR CCA 90 bp | AGAAAAGTGAGGAAGAAATATAGCCTAAGAAGTTATCACTTTACTATGGGTGGTGCAAACCCGGCAGAATaGTTTCCAATTGCTGGATCA | + |
|
Preference number: 4 (lower is better) Translates to: RKVRKKYSLRSYHFTMGGANPAE*FPIAGS Trigger: TGATCCAGCAATTGGAAACCATTCTGCCGGGTTTGC...ACCACCCATAGTAAAGTGATAACTTCTTAGGCTATATTTCTTCCTCACTTTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096114.13 ENSMUST00000163093.2 |
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| CDS-3UTR TCA 90 bp | TTCTGGGCTTGGGTTATTTGTGACTTAGAAGCACCATTTTTCTCCAATAAGGATGTAGTACTTGATAACTaGAGAAAATCCTTGAGGTGC | + |
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Preference number: 4 (lower is better) Translates to: FWAWVICDLEAPFFSNKDVVLDN*RKSLRC Trigger: GCACCTCAAGGATTTTCTTCAGTTATCAAGTACTAC...ATCCTTATTGGAGAAAAATGGTGCTTCTAAGTCACAAATAACCCAAGCCCAGAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096114.13 |
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| CDS-3UTR TCA 90 bp | AGAAAAGTGAGGAAGAAATATAGCCTAAGAAGTTATCACTTTACTATGGGTGGTGCTTTAAAACTTTCATaGCACTCAGGGCAGAGGAGA | + |
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Preference number: 4 (lower is better) Translates to: RKVRKKYSLRSYHFTMGGALKLS*HSGQRR Trigger: TCTCCTCTGCCCTGAGTGTCATGAAAGTTTTAAAGC...ACCACCCATAGTAAAGTGATAACTTCTTAGGCTATATTTCTTCCTCACTTTTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000096114.13 ENSMUST00000163093.2 |
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| CDS-3UTR CCA 90 bp | TTCTGGGCTTGGGTTATTTGTGACTTAGAAGCACCATTTTTCTCCAATAAGGATGAATATGTCCATTTATaGCATATGGTAGCAACTGGC | + |
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Preference number: 4 (lower is better) Translates to: FWAWVICDLEAPFFSNKDEYVHL*HMVATG Trigger: GCCAGTTGCTACCATATGCCATAAATGGACATATTC...ATCCTTATTGGAGAAAAATGGTGCTTCTAAGTCACAAATAACCCAAGCCCAGAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000096114.13 ENSMUST00000163093.2 |
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| CDS-3UTR TCA 90 bp | AGAAAAGTGAGGAAGAAATATAGCCTAAGAAGTTATCACTTTACTATGGGTGGTTATTATCAATGGAGATaGAGCATATGCAGGGGTGAC | + |
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Preference number: 4 (lower is better) Translates to: RKVRKKYSLRSYHFTMGGYYQWR*SICRGD Trigger: GTCACCCCTGCATATGCTTCATCTCCATTGATAATA...ACCACCCATAGTAAAGTGATAACTTCTTAGGCTATATTTCTTCCTCACTTTTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000096114.13 ENSMUST00000163093.2 |
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| CDS-3UTR CCA 90 bp | TTCTGGGCTTGGGTTATTTGTGACTTAGAAGCACCATTTTTCTCCAATAAGGATATGGTTTCCAATTGCTaGATCATTAACTTCTGCACA | + |
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Preference number: 4 (lower is better) Translates to: FWAWVICDLEAPFFSNKDMVSNC*IINFCT Trigger: TGTGCAGAAGTTAATGATCCAGCAATTGGAAACCAT...ATCCTTATTGGAGAAAAATGGTGCTTCTAAGTCACAAATAACCCAAGCCCAGAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000096114.13 ENSMUST00000163093.2 |
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| CDS-3UTR CCA 90 bp | AAAGTGAGGAAGAAATATAGCCTAAGAAGTTATCACTTTACTATGGGTGGTAGCGAATATGTCCATTTATaGCATATGGTAGCAACTGGC | + |
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Preference number: 4 (lower is better) Translates to: KVRKKYSLRSYHFTMGGSEYVHL*HMVATG Trigger: GCCAGTTGCTACCATATGCCATAAATGGACATATTC...GCTACCACCCATAGTAAAGTGATAACTTCTTAGGCTATATTTCTTCCTCACTTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096114.13 ENSMUST00000163093.2 |
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| CDS-3UTR GCA 90 bp | AAAGTGAGGAAGAAATATAGCCTAAGAAGTTATCACTTTACTATGGGTGGTAGCAGAATGGTTTCCAATTaGTGGATCATTAACTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: KVRKKYSLRSYHFTMGGSRMVSN*WIINFC Trigger: GCAGAAGTTAATGATCCAGCAATTGGAAACCATTCT...GCTACCACCCATAGTAAAGTGATAACTTCTTAGGCTATATTTCTTCCTCACTTT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096114.13 ENSMUST00000163093.2 |
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| CDS-3UTR CCA 90 bp | AAAGTGAGGAAGAAATATAGCCTAAGAAGTTATCACTTTACTATGGGTGGTAGCATGGTTTCCAATTGCTaGATCATTAACTTCTGCACA | + |
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Preference number: 4 (lower is better) Translates to: KVRKKYSLRSYHFTMGGSMVSNC*IINFCT Trigger: TGTGCAGAAGTTAATGATCCAGCAATTGGAAACCAT...GCTACCACCCATAGTAAAGTGATAACTTCTTAGGCTATATTTCTTCCTCACTTT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096114.13 ENSMUST00000163093.2 |
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| CDS-3UTR GCA 90 bp | AAAGTGAGGAAGAAATATAGCCTAAGAAGTTATCACTTTACTATGGGTGGTAGCCTGATGACTCTATATTaGGCTTCTTATTATCAATGG | + |
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Preference number: 4 (lower is better) Translates to: KVRKKYSLRSYHFTMGGSLMTLY*ASYYQW Trigger: CCATTGATAATAAGAAGCGCAATATAGAGTCATCAG...GCTACCACCCATAGTAAAGTGATAACTTCTTAGGCTATATTTCTTCCTCACTTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096114.13 ENSMUST00000163093.2 |
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| CDS-3UTR GCA 90 bp | AGAAAAGTGAGGAAGAAATATAGCCTAAGAAGTTATCACTTTACTATGGGTGGTAGAATGGTTTCCAATTaGTGGATCATTAACTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: RKVRKKYSLRSYHFTMGGRMVSN*WIINFC Trigger: GCAGAAGTTAATGATCCAGCAATTGGAAACCATTCT...ACCACCCATAGTAAAGTGATAACTTCTTAGGCTATATTTCTTCCTCACTTTTCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096114.13 ENSMUST00000163093.2 |
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| CDS-3UTR GCA 90 bp | AGAAAAGTGAGGAAGAAATATAGCCTAAGAAGTTATCACTTTACTATGGGTGGTCTGATGACTCTATATTaGGCTTCTTATTATCAATGG | + |
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Preference number: 4 (lower is better) Translates to: RKVRKKYSLRSYHFTMGGLMTLY*ASYYQW Trigger: CCATTGATAATAAGAAGCGCAATATAGAGTCATCAG...ACCACCCATAGTAAAGTGATAACTTCTTAGGCTATATTTCTTCCTCACTTTTCT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096114.13 ENSMUST00000163093.2 |
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| CDS TCA 90 bp | TGGATCATTAACTTCTGCACATCCGCCTCACTGGCCTCCAAGTGTTaGACTCCAAATGGGACAGTGGTTTGGATCACCACGGATGGACCA | + |
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Preference number: 5 (lower is better) Translates to: WIINFCTSASLASKC*TPNGTVVWITTDGP Trigger: TGGTCCATCCGTGGTGATCCAAACCACTGTCCCATTTGGAGTTCAACACTTGGAGGCCAGTGAGGCGGATGTGCAGAAGTTAATGATCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096114.13 ENSMUST00000163093.2 |
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| CDS CCA 90 bp | CATCCGCCTCACTGGCCTCCAAGTGTTGAACTCCAAATGGGACAGTaGTTTGGATCACCACGGATGGACCACATTCTGATGACTCTATAT | + |
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Preference number: 5 (lower is better) Translates to: HPPHWPPSVELQMGQ*FGSPRMDHILMTLY Trigger: ATATAGAGTCATCAGAATGTGGTCCATCCGTGGTGATCCAAACCACTGTCCCATTTGGAGTTCAACACTTGGAGGCCAGTGAGGCGGATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096114.13 ENSMUST00000163093.2 |
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| CDS TCA 90 bp | CCAGTGTCTGTGGAGACTTCCCACTTGTTATCTTTCAGGTGGATCTaGGTCACACAGTGCTTGAGGGAGACTTCTGCACCTGACTTTTTC | + |
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Preference number: 5 (lower is better) Translates to: PVSVETSHLLSFRWI*VTQCLRETSAPDFF Trigger: GAAAAAGTCAGGTGCAGAAGTCTCCCTCAAGCACTGTGTGACTCAGATCCACCTGAAAGATAACAAGTGGGAAGTCTCCACAGACACTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096114.13 |
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| CDS TCA 90 bp | GTAACCTGTGAATATGTCCATTTATGGCATATGGTAGCAACTGGCTaGGGCAAACCCGGCAGAATGGTTTCCAATTGCTGGATCATTAAC | + |
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Preference number: 5 (lower is better) Translates to: VTCEYVHLWHMVATG*GKPGRMVSNCWIIN Trigger: GTTAATGATCCAGCAATTGGAAACCATTCTGCCGGGTTTGCCTCAGCCAGTTGCTACCATATGCCATAAATGGACATATTCACAGGTTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096114.13 ENSMUST00000163093.2 |
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| CDS-3UTR CAA 90 bp | TTCTGGGCTTGGGTTATTTGTGACTTAGAAGCACCATTTTTCTCCAATAAGGATACTGGCCTCCAAGTGTaGAACTCCAAATGGGACAGT | + |
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Preference number: 5 (lower is better) Translates to: FWAWVICDLEAPFFSNKDTGLQV*NSKWDS Trigger: ACTGTCCCATTTGGAGTTCAACACTTGGAGGCCAGT...ATCCTTATTGGAGAAAAATGGTGCTTCTAAGTCACAAATAACCCAAGCCCAGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000096114.13 ENSMUST00000163093.2 |
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| CDS-3UTR CAA 90 bp | AGAAAAGTGAGGAAGAAATATAGCCTAAGAAGTTATCACTTTACTATGGGTGGTGTGGAGACTTCCCACTaGTTATCTTTCAGGTGGATC | + |
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Preference number: 5 (lower is better) Translates to: RKVRKKYSLRSYHFTMGGVETSH*LSFRWI Trigger: GATCCACCTGAAAGATAACAAGTGGGAAGTCTCCAC...ACCACCCATAGTAAAGTGATAACTTCTTAGGCTATATTTCTTCCTCACTTTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096114.13 |
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| CDS TCA 72 bp | CTCAGGGCAGAGGAGATGCAGCCATTGAAGTTGGAGTaGGTAAATCCATCCCCTCCGCACACCAGGAAAGGC | + |
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Preference number: 6 (lower is better) Translates to: LRAEEMQPLKLE*VNPSPPHTRKG Trigger: GCCTTTCCTGGTGTGCGGAGGGGATGGATTTACTCACTCCAACTTCAATGGCTGCATCTCCTCTGCCCTGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096114.13 ENSMUST00000163093.2 |
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| CDS CCA 72 bp | ATCCGCCTCACTGGCCTCCAAGTGTTGAACTCCAAATaGGACAGTGGTTTGGATCACCACGGATGGACCACA | + |
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Preference number: 6 (lower is better) Translates to: IRLTGLQVLNSK*DSGLDHHGWTT Trigger: TGTGGTCCATCCGTGGTGATCCAAACCACTGTCCCATTTGGAGTTCAACACTTGGAGGCCAGTGAGGCGGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096114.13 ENSMUST00000163093.2 |
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| CDS TCA 72 bp | AACTTCTGCACATCCGCCTCACTGGCCTCCAAGTGTTaGACTCCAAATGGGACAGTGGTTTGGATCACCACG | + |
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Preference number: 6 (lower is better) Translates to: NFCTSASLASKC*TPNGTVVWITT Trigger: CGTGGTGATCCAAACCACTGTCCCATTTGGAGTTCAACACTTGGAGGCCAGTGAGGCGGATGTGCAGAAGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096114.13 ENSMUST00000163093.2 |
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| CDS CCA 72 bp | CACAATGTCACCTTGAAGTTCCAGAATCTGAGGAGCTaGCATGGTGAGGATGACAAGGTCAAACTGCTCAGC | + |
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Preference number: 6 (lower is better) Translates to: HNVTLKFQNLRS*HGEDDKVKLLS Trigger: GCTGAGCAGTTTGACCTTGTCATCCTCACCATGCCAGCTCCTCAGATTCTGGAACTTCAAGGTGACATTGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096114.13 |
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| CDS TCA 72 bp | TGTTATCTTTCAGGTGGATCTGAGTCACACAGTGCTTaGGGGAGACTTCTGCACCTGACTTTTTCAAGTAGT | + |
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Preference number: 6 (lower is better) Translates to: CYLSGGSESHSA*GRLLHLTFSSS Trigger: ACTACTTGAAAAAGTCAGGTGCAGAAGTCTCCCTCAAGCACTGTGTGACTCAGATCCACCTGAAAGATAACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096114.13 |
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| CDS CCA 72 bp | AGTTGCAATCTCCTTCCTTCCCTTTCATTCCTTCAATaGGGGATGTCAGAGGCTTCAAAATTCCATGAGCTA | + |
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Preference number: 6 (lower is better) Translates to: SCNLLPSLSFLQ*GMSEASKFHEL Trigger: TAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGGAAGGAAGGAGATTGCAACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096114.13 |
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| CDS CAA 72 bp | ATCACCACGGATGGACCACATTCTGATGACTCTATATaGCGCTTCTTATTATCAATGGAGATGAAGCATATG | + |
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Preference number: 6 (lower is better) Translates to: ITTDGPHSDDSI*RFLLSMEMKHM Trigger: CATATGCTTCATCTCCATTGATAATAAGAAGCGCAATATAGAGTCATCAGAATGTGGTCCATCCGTGGTGAT 40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096114.13 ENSMUST00000163093.2 |
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