RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RNFT2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032850

Ensembl transcript IDs: ENSMUST00000117177.8, ENSMUST00000121369.8, ENSMUST00000132831.2, ENSMUST00000133372.2, ENSMUST00000154786.8

Found 326 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCAGTGGGGGATGGTCCCAAGGCTCCGTACCTGTGCCGTTCCCTTTaGAAGGCTGGGCCTGTTAGGCTCGGGTCCAAAGCAGGCCGTTCT +
Preference number: 1 (lower is better)
Translates to: AVGDGPKAPYLCRSL*KAGPVRLGSKAGRS
Trigger: AGAACGGCCTGCTTTGGACCCGAGCCTAACAGGCCCAGCCTTCCAAAGGGAACGGCACAGGTACGGAGCCTTGGGACCATCCCCCACTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR TCA 90 bp CTGCCATTTGACCTCGCTGCCTGCCTGCTCAGAGCAGTCTGTCTCTaGTGTGCTGTATGCCCAGGCCACGGATGCTCAGCCAGCGAGGGG +
Preference number: 1 (lower is better)
Translates to: LPFDLAACLLRAVCL*CAVCPGHGCSASEG
Trigger: CCCCTCGCTGGCTGAGCATCCGTGGCCTGGGCATACAGCACATCAGAGACAGACTGCTCTGAGCAGGCAGGCAGCGAGGTCAAATGGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR GCA 90 bp ACTTCCGCTTCAGCAGTGGGGGATGGTCCCAAGGCTCCGTACCTGTaGCGTTCCCTTTGGAAGGCTGGGCCTGTTAGGCTCGGGTCCAAA +
Preference number: 1 (lower is better)
Translates to: TSASAVGDGPKAPYL*RSLWKAGPVRLGSK
Trigger: TTTGGACCCGAGCCTAACAGGCCCAGCCTTCCAAAGGGAACGGCACAGGTACGGAGCCTTGGGACCATCCCCCACTGCTGAAGCGGAAGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR TCA 90 bp GAGGAAGACCCTGTGCCTGCTTCCTCGGCTGAGAACAGGGTCAGGTaGAGGAATTCAGGGAACCCCATCTGCCCAGAGACACTGAGGAGC +
Preference number: 1 (lower is better)
Translates to: EEDPVPASSAENRVR*RNSGNPICPETLRS
Trigger: GCTCCTCAGTGTCTCTGGGCAGATGGGGTTCCCTGAATTCCTTCACCTGACCCTGTTCTCAGCCGAGGAAGCAGGCACAGGGTCTTCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132831.2
3UTR GCA 90 bp GTGGCTGCATCTGATCCATCCCACCCTACACTTCCGTGCACCTCCTaGAGCTCCCACCCCTCCACAATGCTGACAGCATCTCAGGCAAAG +
Preference number: 1 (lower is better)
Translates to: VAASDPSHPTLPCTS*SSHPSTMLTASQAK
Trigger: CTTTGCCTGAGATGCTGTCAGCATTGTGGAGGGGTGGGAGCTGCAGGAGGTGCACGGAAGTGTAGGGTGGGATGGATCAGATGCAGCCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR GCA 90 bp CACCAAAGACATGTCCCAAAGCAAAAGCAGAGGACCTCAGGTCGCTaGCCACTTCCGCTTCAGCAGTGGGGGATGGTCCCAAGGCTCCGT +
Preference number: 1 (lower is better)
Translates to: HQRHVPKQKQRTSGR*PLPLQQWGMVPRLR
Trigger: ACGGAGCCTTGGGACCATCCCCCACTGCTGAAGCGGAAGTGGGCAGCGACCTGAGGTCCTCTGCTTTTGCTTTGGGACATGTCTTTGGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR TCA 90 bp AAGTTTGGAGTCAGGTTTCCAAGCCCGACTCCCAGTGGCTGCATCTaGTCCATCCCACCCTACACTTCCGTGCACCTCCTGCAGCTCCCA +
Preference number: 1 (lower is better)
Translates to: KFGVRFPSPTPSGCI*SIPPYTSVHLLQLP
Trigger: TGGGAGCTGCAGGAGGTGCACGGAAGTGTAGGGTGGGATGGATCAGATGCAGCCACTGGGAGTCGGGCTTGGAAACCTGACTCCAAACTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR TCA 90 bp GGGATGCTTGGTGCATCCTGCTGTTTTGAAGGTCAGCTAGGTGGGTaGAGCCTGGTGCTCACATGTTGGACGTTCTCCCATCGGCTCCTG +
Preference number: 1 (lower is better)
Translates to: GMLGASCCFEGQLGG*SLVLTCWTFSHRLL
Trigger: CAGGAGCCGATGGGAGAACGTCCAACATGTGAGCACCAGGCTTCACCCACCTAGCTGACCTTCAAAACAGCAGGATGCACCAAGCATCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR CCA 90 bp TTTCCCACAGCCTGCTGTCTGGGAAACTGCCTGAGCCCTCTAAACTaGATGAACCCCACTGGCCATCTGAGGTGTTCCCTGGAAGGATGG +
Preference number: 1 (lower is better)
Translates to: FPTACCLGNCLSPLN*MNPTGHLRCSLEGW
Trigger: CCATCCTTCCAGGGAACACCTCAGATGGCCAGTGGGGTTCATCCAGTTTAGAGGGCTCAGGCAGTTTCCCAGACAGCAGGCTGTGGGAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR CCA 90 bp AATCTCTCTGATAAAAACCAGTTGCAGGCAGTCCCACCACTCTCCTaGGTACCCCCTCAAACCAGAGAGGACAGAAGGGCCCATCCTCCC +
Preference number: 1 (lower is better)
Translates to: NLSDKNQLQAVPPLS*VPPQTREDRRAHPP
Trigger: GGGAGGATGGGCCCTTCTGTCCTCTCTGGTTTGAGGGGGTACCCAGGAGAGTGGTGGGACTGCCTGCAACTGGTTTTTATCAGAGAGATT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR TCA 90 bp GAAAAGGAATCACAAAGGTGCAGTCTGTCCATGGCTCCTGCCATTTaGCCTCGCTGCCTGCCTGCTCAGAGCAGTCTGTCTCTGATGTGC +
Preference number: 1 (lower is better)
Translates to: EKESQRCSLSMAPAI*PRCLPAQSSLSLMC
Trigger: GCACATCAGAGACAGACTGCTCTGAGCAGGCAGGCAGCGAGGTCAAATGGCAGGAGCCATGGACAGACTGCACCTTTGTGATTCCTTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR CCA 90 bp ACACTCTGGACCAGAGCTGACCCTTCTGAGACTGACTGTCCCAGGTaGATCCCGGGAGAAAAGGAATCACAAAGGTGCAGTCTGTCCATG +
Preference number: 1 (lower is better)
Translates to: TLWTRADPSETDCPR*IPGEKESQRCSLSM
Trigger: CATGGACAGACTGCACCTTTGTGATTCCTTTTCTCCCGGGATCCACCTGGGACAGTCAGTCTCAGAAGGGTCAGCTCTGGTCCAGAGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR CCA 90 bp CTGTCTGGGAAACTGCCTGAGCCCTCTAAACTGGATGAACCCCACTaGCCATCTGAGGTGTTCCCTGGAAGGATGGGAACTGAAGAGCAT +
Preference number: 1 (lower is better)
Translates to: LSGKLPEPSKLDEPH*PSEVFPGRMGTEEH
Trigger: ATGCTCTTCAGTTCCCATCCTTCCAGGGAACACCTCAGATGGCCAGTGGGGTTCATCCAGTTTAGAGGGCTCAGGCAGTTTCCCAGACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR GCA 90 bp GCTGACAGCATCTCAGGCAAAGCAATCTCTCTGATAAAAACCAGTTaGAGGCAGTCCCACCACTCTCCTGGGTACCCCCTCAAACCAGAG +
Preference number: 1 (lower is better)
Translates to: ADSISGKAISLIKTS*RQSHHSPGYPLKPE
Trigger: CTCTGGTTTGAGGGGGTACCCAGGAGAGTGGTGGGACTGCCTGCAACTGGTTTTTATCAGAGAGATTGCTTTGCCTGAGATGCTGTCAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR TCA 90 bp CTACACTTCCGTGCACCTCCTGCAGCTCCCACCCCTCCACAATGCTaGCAGCATCTCAGGCAAAGCAATCTCTCTGATAAAAACCAGTTG +
Preference number: 1 (lower is better)
Translates to: LHFRAPPAAPTPPQC*QHLRQSNLSDKNQL
Trigger: CAACTGGTTTTTATCAGAGAGATTGCTTTGCCTGAGATGCTGTCAGCATTGTGGAGGGGTGGGAGCTGCAGGAGGTGCACGGAAGTGTAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR TCA 90 bp AATGATGTGTGTGTCCCTGGAGCTGGAGTTGTGAGCCCTTTGGTGTaGGTCCTGGGTCCTCTTAAAGATGCAAGCCAAGCACTCTCAACC +
Preference number: 1 (lower is better)
Translates to: NDVCVPGAGVVSPLV*VLGPLKDASQALST
Trigger: GGTTGAGAGTGCTTGGCTTGCATCTTTAAGAGGACCCAGGACTCACACCAAAGGGCTCACAACTCCAGCTCCAGGGACACACACATCATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR CCA 90 bp GAGAATAAGGACAGAAGAATGACAGAAGGCAGGTGGCATACACTCTaGACCAGAGCTGACCCTTCTGAGACTGACTGTCCCAGGTGGATC +
Preference number: 1 (lower is better)
Translates to: ENKDRRMTEGRWHTL*TRADPSETDCPRWI
Trigger: GATCCACCTGGGACAGTCAGTCTCAGAAGGGTCAGCTCTGGTCCAGAGTGTATGCCACCTGCCTTCTGTCATTCTTCTGTCCTTATTCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR GCA 90 bp TTGCTTAGCATCATGGCCATTGCCATAGTAACAAAGCTTGAAGGATaGCCTGGTCTCCTGGAAAGGGTGGGTGTGTTACTGGTACCAGGA +
Preference number: 1 (lower is better)
Translates to: LLSIMAIAIVTKLEG*PGLLERVGVLLVPG
Trigger: TCCTGGTACCAGTAACACACCCACCCTTTCCAGGAGACCAGGGCATCCTTCAAGCTTTGTTACTATGGCAATGGCCATGATGCTAAGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR CCA 90 bp GACAATGTAGATGAGAATAAGGACAGAAGAATGACAGAAGGCAGGTaGCATACACTCTGGACCAGAGCTGACCCTTCTGAGACTGACTGT +
Preference number: 1 (lower is better)
Translates to: DNVDENKDRRMTEGR*HTLWTRADPSETDC
Trigger: ACAGTCAGTCTCAGAAGGGTCAGCTCTGGTCCAGAGTGTATGCCACCTGCCTTCTGTCATTCTTCTGTCCTTATTCTCATCTACATTGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR CCA 90 bp CTCGGGCGGTTAGTTAAAGATATAAAGCAGTCTTTTCAGAGACTCTaGAAGGACTGTTGTTTCTCCGAGCTAATTACCTCACTAGAGAGG +
Preference number: 1 (lower is better)
Translates to: LGRLVKDIKQSFQRL*KDCCFSELITSLER
Trigger: CCTCTCTAGTGAGGTAATTAGCTCGGAGAAACAACAGTCCTTCCAGAGTCTCTGAAAAGACTGCTTTATATCTTTAACTAACCGCCCGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR CAA 90 bp TGTGCTGTATGCCCAGGCCACGGATGCTCAGCCAGCGAGGGGCACTaGCAGCAACAGCACCAGGCAGCGCTGGAGACACATTGGCCCCTT +
Preference number: 2 (lower is better)
Translates to: CAVCPGHGCSASEGH*QQQHQAALETHWPL
Trigger: AAGGGGCCAATGTGTCTCCAGCGCTGCCTGGTGCTGTTGCTGCAAGTGCCCCTCGCTGGCTGAGCATCCGTGGCCTGGGCATACAGCACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR TCA 90 bp CGCTTCAGCAGTGGGGGATGGTCCCAAGGCTCCGTACCTGTGCCGTTCCCTTTGTGGGGGAGCCAAGTCTaGGTGAGGAGGGCTCCCCTT +
Preference number: 2 (lower is better)
Translates to: RFSSGGWSQGSVPVPFPLWGSQV*VRRAPL
Trigger: AAGGGGAGCCCTCCTCACTCAGACTTGGCTCCCCCA...CAAAGGGAACGGCACAGGTACGGAGCCTTGGGACCATCCCCCACTGCTGAAGCG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR TCA 90 bp CGCTTCAGCAGTGGGGGATGGTCCCAAGGCTCCGTACCTGTGCCGTTCCCTTTGTGCGGATGCCGGCTGTaGGAGAACCGAGTCAGGAGC +
Preference number: 2 (lower is better)
Translates to: RFSSGGWSQGSVPVPFPLCGCRL*ENRVRS
Trigger: GCTCCTGACTCGGTTCTCTCACAGCCGGCATCCGCA...CAAAGGGAACGGCACAGGTACGGAGCCTTGGGACCATCCCCCACTGCTGAAGCG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR TCA 90 bp GGTGACTGTGAGCCACCCCTGTCTACCCCAGAGGAGCTCTGTCACCATGTCTGGTCTGCCCAGAGACACTaGGGAGCCCTGGCCTGCCTC +
Preference number: 2 (lower is better)
Translates to: GDCEPPLSTPEELCHHVWSAQRH*GALACL
Trigger: GAGGCAGGCCAGGGCTCCTCAGTGTCTCTGGGCAGA...CCAGACATGGTGACAGAGCTCCTCTGGGGTAGACAGGGGTGGCTCACAGTCACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132831.2
3UTR-3UTR GCA 90 bp ACCCTGTGCCTGCTTCCTCGGCTGAGAACAGGGTCAGGTGAAGGAATTCAGGGAGCCCTGGCCTGCCTCTaGAGAGGGAGGAGGCTTATG +
Preference number: 2 (lower is better)
Translates to: TLCLLPRLRTGSGEGIQGALACL*RGRRLM
Trigger: CATAAGCCTCCTCCCTCTGCAGAGGCAGGCCAGGGC...TCCCTGAATTCCTTCACCTGACCCTGTTCTCAGCCGAGGAAGCAGGCACAGGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132831.2
3UTR-3UTR TCA 90 bp CAGGGGACACTTTCCCACAGCCTGCTGTCTGGGAAACTGCCTGAGCCCTCTAAAGGAGCCAAGTCTGAGTaGGGAGGGCTCCCCTTTCTG +
Preference number: 2 (lower is better)
Translates to: QGTLSHSLLSGKLPEPSKGAKSE*GGLPFL
Trigger: CAGAAAGGGGAGCCCTCCTCACTCAGACTTGGCTCC...TTTAGAGGGCTCAGGCAGTTTCCCAGACAGCAGGCTGTGGGAAAGTGTCCCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR TCA 90 bp TTCCCTGGAAGGATGGGAACTGAAGAGCATCTCACTGTCCCAGGGGATGCTCCATGGGGGAGCCAAGTCTaGGTGAGGAGGGCTCCCCTT +
Preference number: 2 (lower is better)
Translates to: FPGRMGTEEHLTVPGDAPWGSQV*VRRAPL
Trigger: AAGGGGAGCCCTCCTCACTCAGACTTGGCTCCCCCA...TGGAGCATCCCCTGGGACAGTGAGATGCTCTTCAGTTCCCATCCTTCCAGGGAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR TCA 90 bp ATACGCCACTGCAGGGGACACTTTCCCACAGCCTGCTGTCTGGGAAACTGCCTGACCCCACTGGCCATCTaGGGTGTTCCCTGGAAGGAT +
Preference number: 2 (lower is better)
Translates to: IRHCRGHFPTACCLGNCLTPLAI*GVPWKD
Trigger: ATCCTTCCAGGGAACACCTCAGATGGCCAGTGGGGT...CAGGCAGTTTCCCAGACAGCAGGCTGTGGGAAAGTGTCCCCTGCAGTGGCGTAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR GCA 90 bp ATACGCCACTGCAGGGGACACTTTCCCACAGCCTGCTGTCTGGGAAACTGCCTGACCTCGCTGCCTGCCTaGTCAGAGCAGTCTGTCTCT +
Preference number: 2 (lower is better)
Translates to: IRHCRGHFPTACCLGNCLTSLPA*SEQSVS
Trigger: AGAGACAGACTGCTCTGAGCAGGCAGGCAGCGAGGT...CAGGCAGTTTCCCAGACAGCAGGCTGTGGGAAAGTGTCCCCTGCAGTGGCGTAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR GCA 90 bp ATACGCCACTGCAGGGGACACTTTCCCACAGCCTGCTGTCTGGGAAACTGCCTGCCATGTCCACAGCTCTaGACAGGCCTGAGCTGTCAG +
Preference number: 2 (lower is better)
Translates to: IRHCRGHFPTACCLGNCLPCPQL*TGLSCQ
Trigger: CTGACAGCTCAGGCCTGTGCAGAGCTGTGGACATGG...CAGGCAGTTTCCCAGACAGCAGGCTGTGGGAAAGTGTCCCCTGCAGTGGCGTAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CCA 90 bp AGCCTGCTGTCTGGGAAACTGCCTGAGCCCTCTAAACTGGATGAACCCCACTGGAGGCATCCTTGGGGCTaGGCTCCCCAGACACTCATG +
Preference number: 2 (lower is better)
Translates to: SLLSGKLPEPSKLDEPHWRHPWG*APQTLM
Trigger: CATGAGTGTCTGGGGAGCCCAGCCCCAAGGATGCCT...CCAGTGGGGTTCATCCAGTTTAGAGGGCTCAGGCAGTTTCCCAGACAGCAGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CCA 90 bp CGCTTCAGCAGTGGGGGATGGTCCCAAGGCTCCGTACCTGTGCCGTTCCCTTTGACACACACACTGTACTaGGGCGCTGAGGAAGTGTTG +
Preference number: 2 (lower is better)
Translates to: RFSSGGWSQGSVPVPFPLTHTLY*GAEEVL
Trigger: CAACACTTCCTCAGCGCCCCAGTACAGTGTGTGTGT...CAAAGGGAACGGCACAGGTACGGAGCCTTGGGACCATCCCCCACTGCTGAAGCG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CCA 90 bp ATACGCCACTGCAGGGGACACTTTCCCACAGCCTGCTGTCTGGGAAACTGCCTGAAGCCCGACTCCCAGTaGCTGCATCTGATCCATCCC +
Preference number: 2 (lower is better)
Translates to: IRHCRGHFPTACCLGNCLKPDSQ*LHLIHP
Trigger: GGGATGGATCAGATGCAGCCACTGGGAGTCGGGCTT...CAGGCAGTTTCCCAGACAGCAGGCTGTGGGAAAGTGTCCCCTGCAGTGGCGTAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CCA 90 bp AGCCCTGGCCTGCCTCTGCAGAGGGAGGAGGCTTATGAAGGATGGGATGAAAACTCGGGAGAGGATCCCTaGGAACTGCGTTCACACGGC +
Preference number: 2 (lower is better)
Translates to: SPGLPLQREEAYEGWDENSGEDP*ELRSHG
Trigger: GCCGTGTGAACGCAGTTCCCAGGGATCCTCTCCCGA...GTTTTCATCCCATCCTTCATAAGCCTCCTCCCTCTGCAGAGGCAGGCCAGGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132831.2
3UTR-3UTR TCA 90 bp AGGCAGGCAGAATTCCAGAGGCTTCTGTGCGGTCACCTGTGCTATTTCGTCCCAATGGCTCCTGCCATTTaGCCTCGCTGCCTGCCTGCT +
Preference number: 2 (lower is better)
Translates to: RQAEFQRLLCGHLCYFVPMAPAI*PRCLPA
Trigger: AGCAGGCAGGCAGCGAGGTCAAATGGCAGGAGCCAT...TGGGACGAAATAGCACAGGTGACCGCACAGAAGCCTCTGGAATTCTGCCTGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR TCA 90 bp CTACAGAGGCTCCTTTCTCCCTCCCCCAACCCCCTTGGTGCTAATCTCAAACGTATGGCTCCTGCCATTTaGCCTCGCTGCCTGCCTGCT +
Preference number: 2 (lower is better)
Translates to: LQRLLSPSPNPLGANLKRMAPAI*PRCLPA
Trigger: AGCAGGCAGGCAGCGAGGTCAAATGGCAGGAGCCAT...ACGTTTGAGATTAGCACCAAGGGGGTTGGGGGAGGGAGAAAGGAGCCTCTGTAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR TCA 90 bp GGAGTTACAGGTGACTGTGAGCCACCCCTGTCTACCCCAGAGGAGCTCTGTCACGAGAACAGGGTCAGGTaGAGGAATTCAGGGAACCCC +
Preference number: 2 (lower is better)
Translates to: GVTGDCEPPLSTPEELCHENRVR*RNSGNP
Trigger: GGGGTTCCCTGAATTCCTTCACCTGACCCTGTTCTC...GTGACAGAGCTCCTCTGGGGTAGACAGGGGTGGCTCACAGTCACCTGTAACTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132831.2
3UTR-3UTR TCA 90 bp GGAGTTACAGGTGACTGTGAGCCACCCCTGTCTACCCCAGAGGAGCTCTGTCACCATGAGACTCTAGTGTaGGGAAGACCCTGTGCCTGC +
Preference number: 2 (lower is better)
Translates to: GVTGDCEPPLSTPEELCHHETLV*GRPCAC
Trigger: GCAGGCACAGGGTCTTCCTCACACTAGAGTCTCATG...GTGACAGAGCTCCTCTGGGGTAGACAGGGGTGGCTCACAGTCACCTGTAACTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132831.2
3UTR-3UTR CCA 90 bp AGAAGGGCCCATCCTCCCTTCCCTCTTAGGACATCCAGGCAGTGGGATTGCTTATTTCCCAGGCATCCTTaGGGCTGGGCTCCCCAGACA +
Preference number: 2 (lower is better)
Translates to: RRAHPPFPLRTSRQWDCLFPRHP*GWAPQT
Trigger: TGTCTGGGGAGCCCAGCCCCAAGGATGCCTGGGAAA...TAAGCAATCCCACTGCCTGGATGTCCTAAGAGGGAAGGGAGGATGGGCCCTTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CCA 90 bp AGCCTGCTGTCTGGGAAACTGCCTGAGCCCTCTAAACTGGATGAACCCCACTGGGAGGAAGTGTTGGTGTaGAGGCCCTGGGGTCATCAG +
Preference number: 2 (lower is better)
Translates to: SLLSGKLPEPSKLDEPHWEEVLV*RPWGHQ
Trigger: CTGATGACCCCAGGGCCTCCACACCAACACTTCCTC...CCAGTGGGGTTCATCCAGTTTAGAGGGCTCAGGCAGTTTCCCAGACAGCAGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CCA 90 bp AGCCTGCTGTCTGGGAAACTGCCTGAGCCCTCTAAACTGGATGAACCCCACTGGAGCACCAGGCAGCGCTaGAGACACATTGGCCCCTTA +
Preference number: 2 (lower is better)
Translates to: SLLSGKLPEPSKLDEPHWSTRQR*RHIGPL
Trigger: TAAGGGGCCAATGTGTCTCCAGCGCTGCCTGGTGCT...CCAGTGGGGTTCATCCAGTTTAGAGGGCTCAGGCAGTTTCCCAGACAGCAGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CCA 90 bp AGCCTGCTGTCTGGGAAACTGCCTGAGCCCTCTAAACTGGATGAACCCCACTGGCGAGTCAGGAGCCAGTaGAGGCAGGCAGAATTCCAG +
Preference number: 2 (lower is better)
Translates to: SLLSGKLPEPSKLDEPHWRVRSQ*RQAEFQ
Trigger: CTGGAATTCTGCCTGCCTCCACTGGCTCCTGACTCG...CCAGTGGGGTTCATCCAGTTTAGAGGGCTCAGGCAGTTTCCCAGACAGCAGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CCA 90 bp ATACGCCACTGCAGGGGACACTTTCCCACAGCCTGCTGTCTGGGAAACTGCCTGGATGCCCTGGTCTCCTaGAAAGGGTGGGTGTGTTAC +
Preference number: 2 (lower is better)
Translates to: IRHCRGHFPTACCLGNCLDALVS*KGWVCY
Trigger: GTAACACACCCACCCTTTCCAGGAGACCAGGGCATC...CAGGCAGTTTCCCAGACAGCAGGCTGTGGGAAAGTGTCCCCTGCAGTGGCGTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR TCA 90 bp TTCCCTGGAAGGATGGGAACTGAAGAGCATCTCACTGTCCCAGGGGATGCTCCAGGCTCCCCTTTCTGGTaGGGTAGGACACACACACTG +
Preference number: 2 (lower is better)
Translates to: FPGRMGTEEHLTVPGDAPGSPFW*GRTHTL
Trigger: CAGTGTGTGTGTCCTACCTCACCAGAAAGGGGAGCC...TGGAGCATCCCCTGGGACAGTGAGATGCTCTTCAGTTCCCATCCTTCCAGGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR TCA 90 bp ATACGCCACTGCAGGGGACACTTTCCCACAGCCTGCTGTCTGGGAAACTGCCTGTGCATCCTGCTGTTTTaGAGGTCAGCTAGGTGGGTG +
Preference number: 2 (lower is better)
Translates to: IRHCRGHFPTACCLGNCLCILLF*RSARWV
Trigger: CACCCACCTAGCTGACCTTCAAAACAGCAGGATGCA...CAGGCAGTTTCCCAGACAGCAGGCTGTGGGAAAGTGTCCCCTGCAGTGGCGTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR TCA 90 bp CCTGAGCCCTCTAAACTGGATGAACCCCACTGGCCATCTGAGGTGTTCCCTGGACCAATGGTGTGTGTGTaGGAGAGAGCAAGTAGCCCC +
Preference number: 2 (lower is better)
Translates to: PEPSKLDEPHWPSEVFPGPMVCV*ERASSP
Trigger: GGGGCTACTTGCTCTCTCTCACACACACACCATTGG...TCCAGGGAACACCTCAGATGGCCAGTGGGGTTCATCCAGTTTAGAGGGCTCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR TCA 90 bp CCTGAGCCCTCTAAACTGGATGAACCCCACTGGCCATCTGAGGTGTTCCCTGGAAGAGCAGTCTGTCTCTaGTGTGCTGTATGCCCAGGC +
Preference number: 2 (lower is better)
Translates to: PEPSKLDEPHWPSEVFPGRAVCL*CAVCPG
Trigger: GCCTGGGCATACAGCACATCAGAGACAGACTGCTCT...TCCAGGGAACACCTCAGATGGCCAGTGGGGTTCATCCAGTTTAGAGGGCTCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR TCA 90 bp AGAAGGGCCCATCCTCCCTTCCCTCTTAGGACATCCAGGCAGTGGGATTGCTTAAGCTCTGCACAGGCCTaGGCTGTCAGTGAGGGACAA +
Preference number: 2 (lower is better)
Translates to: RRAHPPFPLRTSRQWDCLSSAQA*AVSEGQ
Trigger: TTGTCCCTCACTGACAGCTCAGGCCTGTGCAGAGCT...TAAGCAATCCCACTGCCTGGATGTCCTAAGAGGGAAGGGAGGATGGGCCCTTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR TCA 90 bp TTCCCTCTTAGGACATCCAGGCAGTGGGATTGCTTAGCATCATGGCCATTGCCATGCGGATGCCGGCTGTaGGAGAACCGAGTCAGGAGC +
Preference number: 2 (lower is better)
Translates to: FPLRTSRQWDCLASWPLPCGCRL*ENRVRS
Trigger: GCTCCTGACTCGGTTCTCTCACAGCCGGCATCCGCA...TGGCAATGGCCATGATGCTAAGCAATCCCACTGCCTGGATGTCCTAAGAGGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR TCA 90 bp CAGGGGACACTTTCCCACAGCCTGCTGTCTGGGAAACTGCCTGAGCCCTCTAAAACCCCTCCACAATGCTaGCAGCATCTCAGGCAAAGC +
Preference number: 2 (lower is better)
Translates to: QGTLSHSLLSGKLPEPSKTPPQC*QHLRQS
Trigger: GCTTTGCCTGAGATGCTGTCAGCATTGTGGAGGGGT...TTTAGAGGGCTCAGGCAGTTTCCCAGACAGCAGGCTGTGGGAAAGTGTCCCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR TCA 90 bp ATACGCCACTGCAGGGGACACTTTCCCACAGCCTGCTGTCTGGGAAACTGCCTGTGGAAGGATGGGAACTaGAGAGCATCTCACTGTCCC +
Preference number: 2 (lower is better)
Translates to: IRHCRGHFPTACCLGNCLWKDGN*RASHCP
Trigger: GGGACAGTGAGATGCTCTTCAGTTCCCATCCTTCCA...CAGGCAGTTTCCCAGACAGCAGGCTGTGGGAAAGTGTCCCCTGCAGTGGCGTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR GCA 90 bp CTACAGAGGCTCCTTTCTCCCTCCCCCAACCCCCTTGGTGCTAATCTCAAACGTCCATCGGCTCCTGTGTaGAGACCTGGGTCAGACTGT +
Preference number: 2 (lower is better)
Translates to: LQRLLSPSPNPLGANLKRPSAPV*RPGSDC
Trigger: ACAGTCTGACCCAGGTCTGCACACAGGAGCCGATGG...ACGTTTGAGATTAGCACCAAGGGGGTTGGGGGAGGGAGAAAGGAGCCTCTGTAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR GCA 90 bp ATACGCCACTGCAGGGGACACTTTCCCACAGCCTGCTGTCTGGGAAACTGCCTGCCCAAGCTTCTCACCTaGCAATGGTGTGTGTGTGAG +
Preference number: 2 (lower is better)
Translates to: IRHCRGHFPTACCLGNCLPKLLT*QWCVCE
Trigger: CTCACACACACACCATTGGCAGGTGAGAAGCTTGGG...CAGGCAGTTTCCCAGACAGCAGGCTGTGGGAAAGTGTCCCCTGCAGTGGCGTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR GCA 90 bp AGAAGGGCCCATCCTCCCTTCCCTCTTAGGACATCCAGGCAGTGGGATTGCTTACCATGTCCACAGCTCTaGACAGGCCTGAGCTGTCAG +
Preference number: 2 (lower is better)
Translates to: RRAHPPFPLRTSRQWDCLPCPQL*TGLSCQ
Trigger: CTGACAGCTCAGGCCTGTGCAGAGCTGTGGACATGG...TAAGCAATCCCACTGCCTGGATGTCCTAAGAGGGAAGGGAGGATGGGCCCTTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR GCA 90 bp CAGGGGACACTTTCCCACAGCCTGCTGTCTGGGAAACTGCCTGAGCCCTCTAAACTGGTACCAGGAAAGTaGCCTGGAGACCAAGCAGAG +
Preference number: 2 (lower is better)
Translates to: QGTLSHSLLSGKLPEPSKLVPGK*PGDQAE
Trigger: CTCTGCTTGGTCTCCAGGGCACTTTCCTGGTACCAG...TTTAGAGGGCTCAGGCAGTTTCCCAGACAGCAGGCTGTGGGAAAGTGTCCCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CCA 90 bp TTCCCTGGAAGGATGGGAACTGAAGAGCATCTCACTGTCCCAGGGGATGCTCCAGAGGAAGTGTTGGTGTaGAGGCCCTGGGGTCATCAG +
Preference number: 2 (lower is better)
Translates to: FPGRMGTEEHLTVPGDAPEEVLV*RPWGHQ
Trigger: CTGATGACCCCAGGGCCTCCACACCAACACTTCCTC...TGGAGCATCCCCTGGGACAGTGAGATGCTCTTCAGTTCCCATCCTTCCAGGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CCA 90 bp CTACAGAGGCTCCTTTCTCCCTCCCCCAACCCCCTTGGTGCTAATCTCAAACGTAGCACCAGGCAGCGCTaGAGACACATTGGCCCCTTA +
Preference number: 2 (lower is better)
Translates to: LQRLLSPSPNPLGANLKRSTRQR*RHIGPL
Trigger: TAAGGGGCCAATGTGTCTCCAGCGCTGCCTGGTGCT...ACGTTTGAGATTAGCACCAAGGGGGTTGGGGGAGGGAGAAAGGAGCCTCTGTAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CCA 90 bp ATACGCCACTGCAGGGGACACTTTCCCACAGCCTGCTGTCTGGGAAACTGCCTGACCAGGAAAGTGCCCTaGAGACCAAGCAGAGGAAGA +
Preference number: 2 (lower is better)
Translates to: IRHCRGHFPTACCLGNCLTRKVP*RPSRGR
Trigger: TCTTCCTCTGCTTGGTCTCCAGGGCACTTTCCTGGT...CAGGCAGTTTCCCAGACAGCAGGCTGTGGGAAAGTGTCCCCTGCAGTGGCGTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CCA 90 bp CCTGAGCCCTCTAAACTGGATGAACCCCACTGGCCATCTGAGGTGTTCCCTGGAGATGCCCTGGTCTCCTaGAAAGGGTGGGTGTGTTAC +
Preference number: 2 (lower is better)
Translates to: PEPSKLDEPHWPSEVFPGDALVS*KGWVCY
Trigger: GTAACACACCCACCCTTTCCAGGAGACCAGGGCATC...TCCAGGGAACACCTCAGATGGCCAGTGGGGTTCATCCAGTTTAGAGGGCTCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CCA 90 bp CAGGGGACACTTTCCCACAGCCTGCTGTCTGGGAAACTGCCTGAGCCCTCTAAACTGGATGAACCCCACTaGCCATCTGAGGTGTTCCCT +
Preference number: 2 (lower is better)
Translates to: QGTLSHSLLSGKLPEPSKLDEPH*PSEVFP
Trigger: AGGGAACACCTCAGATGGCCAGTGGGGTTCATCCAG...TTTAGAGGGCTCAGGCAGTTTCCCAGACAGCAGGCTGTGGGAAAGTGTCCCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR TCA 90 bp AGAAGGGCCCATCCTCCCTTCCCTCTTAGGACATCCAGGCAGTGGGATTGCTTACCAATGGTGTGTGTGTaGGAGAGAGCAAGTAGCCCC +
Preference number: 2 (lower is better)
Translates to: RRAHPPFPLRTSRQWDCLPMVCV*ERASSP
Trigger: GGGGCTACTTGCTCTCTCTCACACACACACCATTGG...TAAGCAATCCCACTGCCTGGATGTCCTAAGAGGGAAGGGAGGATGGGCCCTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR GCA 90 bp TTCTGTGCGGTCACCTGTGCTATTTCGTCCCAGGTTTCCAATCAGAGAGTTTCCCCAGCGAGGGGCACTTaGAGCAACAGCACCAGGCAG +
Preference number: 2 (lower is better)
Translates to: FCAVTCAISSQVSNQRVSPARGT*SNSTRQ
Trigger: CTGCCTGGTGCTGTTGCTGCAAGTGCCCCTCGCTGG...GGAAACTCTCTGATTGGAAACCTGGGACGAAATAGCACAGGTGACCGCACAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR GCA 90 bp AGAAGGGCCCATCCTCCCTTCCCTCTTAGGACATCCAGGCAGTGGGATTGCTTACTGGTACCAGGAAAGTaGCCTGGAGACCAAGCAGAG +
Preference number: 2 (lower is better)
Translates to: RRAHPPFPLRTSRQWDCLLVPGK*PGDQAE
Trigger: CTCTGCTTGGTCTCCAGGGCACTTTCCTGGTACCAG...TAAGCAATCCCACTGCCTGGATGTCCTAAGAGGGAAGGGAGGATGGGCCCTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CCA 90 bp CAAACCAGAGAGGACAGAAGGGCCCATCCTCCCTTCCCTCTTAGGACATCCAGGACTGACTGTCCCAGGTaGATCCCGGGAGAAAAGGAA +
Preference number: 2 (lower is better)
Translates to: QTREDRRAHPPFPLRTSRTDCPR*IPGEKE
Trigger: TTCCTTTTCTCCCGGGATCCACCTGGGACAGTCAGT...CCTGGATGTCCTAAGAGGGAAGGGAGGATGGGCCCTTCTGTCCTCTCTGGTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CCA 90 bp AGAAGGGCCCATCCTCCCTTCCCTCTTAGGACATCCAGGCAGTGGGATTGCTTAATCTCAAACGTGGCTTaGGCCAGCCTGTTGTGCGGA +
Preference number: 2 (lower is better)
Translates to: RRAHPPFPLRTSRQWDCLISNVA*ASLLCG
Trigger: TCCGCACAACAGGCTGGCCCAAGCCACGTTTGAGAT...TAAGCAATCCCACTGCCTGGATGTCCTAAGAGGGAAGGGAGGATGGGCCCTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR CAA 90 bp AGCCAAGCACTCTCAACCTCTGCCCTCTCACCAGCCTCCCCTACCTaGTTAATCTCAGGTCCTCACACACACAAGACTTGGAGGACTCAG +
Preference number: 2 (lower is better)
Translates to: SQALSTSALSPASPT*LISGPHTHKTWRTQ
Trigger: CTGAGTCCTCCAAGTCTTGTGTGTGTGAGGACCTGAGATTAACAAGGTAGGGGAGGCTGGTGAGAGGGCAGAGGTTGAGAGTGCTTGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR TCA 90 bp CGCTTCAGCAGTGGGGGATGGTCCCAAGGCTCCGTACCTGTGCCGTTCCCTTTGTATGTGGCCAAGGAATaGTCTTGTCCTTCTAATCCT +
Preference number: 2 (lower is better)
Translates to: RFSSGGWSQGSVPVPFPLYVAKE*SCPSNP
Trigger: AGGATTAGAAGGACAAGATCATTCCTTGGCCACATA...CAAAGGGAACGGCACAGGTACGGAGCCTTGGGACCATCCCCCACTGCTGAAGCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR GCA 90 bp AGGCAGGCAGAATTCCAGAGGCTTCTGTGCGGTCACCTGTGCTATTTCGTCCCACCCAAGCTTCTCACCTaGCAATGGTGTGTGTGTGAG +
Preference number: 2 (lower is better)
Translates to: RQAEFQRLLCGHLCYFVPPKLLT*QWCVCE
Trigger: CTCACACACACACCATTGGCAGGTGAGAAGCTTGGG...TGGGACGAAATAGCACAGGTGACCGCACAGAAGCCTCTGGAATTCTGCCTGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CCA 90 bp AGGCAGGCAGAATTCCAGAGGCTTCTGTGCGGTCACCTGTGCTATTTCGTCCCAACTGACTGTCCCAGGTaGATCCCGGGAGAAAAGGAA +
Preference number: 2 (lower is better)
Translates to: RQAEFQRLLCGHLCYFVPTDCPR*IPGEKE
Trigger: TTCCTTTTCTCCCGGGATCCACCTGGGACAGTCAGT...TGGGACGAAATAGCACAGGTGACCGCACAGAAGCCTCTGGAATTCTGCCTGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CCA 90 bp CAAACCAGAGAGGACAGAAGGGCCCATCCTCCCTTCCCTCTTAGGACATCCAGGATGACAGAAGGCAGGTaGCATACACTCTGGACCAGA +
Preference number: 2 (lower is better)
Translates to: QTREDRRAHPPFPLRTSRMTEGR*HTLWTR
Trigger: TCTGGTCCAGAGTGTATGCCACCTGCCTTCTGTCAT...CCTGGATGTCCTAAGAGGGAAGGGAGGATGGGCCCTTCTGTCCTCTCTGGTTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CCA 90 bp TTCCCTCTTAGGACATCCAGGCAGTGGGATTGCTTAGCATCATGGCCATTGCCACGAGTCAGGAGCCAGTaGAGGCAGGCAGAATTCCAG +
Preference number: 2 (lower is better)
Translates to: FPLRTSRQWDCLASWPLPRVRSQ*RQAEFQ
Trigger: CTGGAATTCTGCCTGCCTCCACTGGCTCCTGACTCG...TGGCAATGGCCATGATGCTAAGCAATCCCACTGCCTGGATGTCCTAAGAGGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CCA 90 bp ATACGCCACTGCAGGGGACACTTTCCCACAGCCTGCTGTCTGGGAAACTGCCTGGGACATCACAAAGTTTaGAGTCAGGTTTCCAAGCCC +
Preference number: 2 (lower is better)
Translates to: IRHCRGHFPTACCLGNCLGHHKV*SQVSKP
Trigger: GGGCTTGGAAACCTGACTCCAAACTTTGTGATGTCC...CAGGCAGTTTCCCAGACAGCAGGCTGTGGGAAAGTGTCCCCTGCAGTGGCGTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CCA 90 bp CAGGGGACACTTTCCCACAGCCTGCTGTCTGGGAAACTGCCTGAGCCCTCTAAACTGGGACTCGCTATGTaGCCAAGGAATGATCTTGTC +
Preference number: 2 (lower is better)
Translates to: QGTLSHSLLSGKLPEPSKLGLAM*PRNDLV
Trigger: GACAAGATCATTCCTTGGCCACATAGCGAGTCCCAG...TTTAGAGGGCTCAGGCAGTTTCCCAGACAGCAGGCTGTGGGAAAGTGTCCCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR GCA 90 bp TTCTGTGCGGTCACCTGTGCTATTTCGTCCCAGGTTTCCAATCAGAGAGTTTCCCCATCGGCTCCTGTGTaGAGACCTGGGTCAGACTGT +
Preference number: 2 (lower is better)
Translates to: FCAVTCAISSQVSNQRVSPSAPV*RPGSDC
Trigger: ACAGTCTGACCCAGGTCTGCACACAGGAGCCGATGG...GGAAACTCTCTGATTGGAAACCTGGGACGAAATAGCACAGGTGACCGCACAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR GCA 90 bp CTACAGAGGCTCCTTTCTCCCTCCCCCAACCCCCTTGGTGCTAATCTCAAACGTTTCCAGAGGCTTCTGTaGGGTCACCTGTGCTATTTC +
Preference number: 2 (lower is better)
Translates to: LQRLLSPSPNPLGANLKRFQRLL*GHLCYF
Trigger: GAAATAGCACAGGTGACCGCACAGAAGCCTCTGGAA...ACGTTTGAGATTAGCACCAAGGGGGTTGGGGGAGGGAGAAAGGAGCCTCTGTAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CCA 90 bp CACACTGTTAGTTCACCTGTTCTCCCTTTTAAGATGGAGTCTCACAGAGCCCAGAGGCATCCTTGGGGCTaGGCTCCCCAGACACTCATG +
Preference number: 2 (lower is better)
Translates to: HTVSSPVLPFKMESHRAQRHPWG*APQTLM
Trigger: CATGAGTGTCTGGGGAGCCCAGCCCCAAGGATGCCT...CTGGGCTCTGTGAGACTCCATCTTAAAAGGGAGAACAGGTGAACTAACAGTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CCA 90 bp CTACAGAGGCTCCTTTCTCCCTCCCCCAACCCCCTTGGTGCTAATCTCAAACGTCTTCTCACCTGCCAATaGTGTGTGTGTGAGAGAGAG +
Preference number: 2 (lower is better)
Translates to: LQRLLSPSPNPLGANLKRLLTCQ*CVCERE
Trigger: CTCTCTCTCACACACACACCATTGGCAGGTGAGAAG...ACGTTTGAGATTAGCACCAAGGGGGTTGGGGGAGGGAGAAAGGAGCCTCTGTAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CCA 90 bp CAGGGGACACTTTCCCACAGCCTGCTGTCTGGGAAACTGCCTGAGCCCTCTAAATGTTCCCTGGAAGGATaGGAACTGAAGAGCATCTCA +
Preference number: 2 (lower is better)
Translates to: QGTLSHSLLSGKLPEPSKCSLEG*ELKSIS
Trigger: TGAGATGCTCTTCAGTTCCCATCCTTCCAGGGAACA...TTTAGAGGGCTCAGGCAGTTTCCCAGACAGCAGGCTGTGGGAAAGTGTCCCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR GCA 90 bp CACACTGTTAGTTCACCTGTTCTCCCTTTTAAGATGGAGTCTCACAGAGCCCAGACCTCGCTGCCTGCCTaGTCAGAGCAGTCTGTCTCT +
Preference number: 2 (lower is better)
Translates to: HTVSSPVLPFKMESHRAQTSLPA*SEQSVS
Trigger: AGAGACAGACTGCTCTGAGCAGGCAGGCAGCGAGGT...CTGGGCTCTGTGAGACTCCATCTTAAAAGGGAGAACAGGTGAACTAACAGTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CCA 90 bp TTCTGTGCGGTCACCTGTGCTATTTCGTCCCAGGTTTCCAATCAGAGAGTTTCCTTGGTGTGGAGGCCCTaGGGTCATCAGATAGAGGTG +
Preference number: 2 (lower is better)
Translates to: FCAVTCAISSQVSNQRVSLVWRP*GHQIEV
Trigger: CACCTCTATCTGATGACCCCAGGGCCTCCACACCAA...GGAAACTCTCTGATTGGAAACCTGGGACGAAATAGCACAGGTGACCGCACAGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CCA 90 bp TTCCCTCTTAGGACATCCAGGCAGTGGGATTGCTTAGCATCATGGCCATTGCCAAGGTGGCATACACTCTaGACCAGAGCTGACCCTTCT +
Preference number: 2 (lower is better)
Translates to: FPLRTSRQWDCLASWPLPRWHTL*TRADPS
Trigger: AGAAGGGTCAGCTCTGGTCCAGAGTGTATGCCACCT...TGGCAATGGCCATGATGCTAAGCAATCCCACTGCCTGGATGTCCTAAGAGGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR TCA 90 bp TTAATCTCAGGTCCTCACACACACAAGACTTGGAGGACTCAGAGGGATTTGAGTAGCTCTGCACAGGCCTaGGCTGTCAGTGAGGGACAA +
Preference number: 2 (lower is better)
Translates to: LISGPHTHKTWRTQRDLSSSAQA*AVSEGQ
Trigger: TTGTCCCTCACTGACAGCTCAGGCCTGTGCAGAGCT...ACTCAAATCCCTCTGAGTCCTCCAAGTCTTGTGTGTGTGAGGACCTGAGATTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR TCA 90 bp CACACTGTTAGTTCACCTGTTCTCCCTTTTAAGATGGAGTCTCACAGAGCCCAGGCCGTGTGCCACTTATaGCATGGATTGAAGCCTCCG +
Preference number: 2 (lower is better)
Translates to: HTVSSPVLPFKMESHRAQAVCHL*HGLKPP
Trigger: CGGAGGCTTCAATCCATGTCATAAGTGGCACACGGC...CTGGGCTCTGTGAGACTCCATCTTAAAAGGGAGAACAGGTGAACTAACAGTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR GCA 90 bp TTCCCTCTTAGGACATCCAGGCAGTGGGATTGCTTAGCATCATGGCCATTGCCATTCCAGAGGCTTCTGTaGGGTCACCTGTGCTATTTC +
Preference number: 2 (lower is better)
Translates to: FPLRTSRQWDCLASWPLPFQRLL*GHLCYF
Trigger: GAAATAGCACAGGTGACCGCACAGAAGCCTCTGGAA...TGGCAATGGCCATGATGCTAAGCAATCCCACTGCCTGGATGTCCTAAGAGGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CCA 90 bp CACACTGTTAGTTCACCTGTTCTCCCTTTTAAGATGGAGTCTCACAGAGCCCAGTTGGTGTGGAGGCCCTaGGGTCATCAGATAGAGGTG +
Preference number: 2 (lower is better)
Translates to: HTVSSPVLPFKMESHRAQLVWRP*GHQIEV
Trigger: CACCTCTATCTGATGACCCCAGGGCCTCCACACCAA...CTGGGCTCTGTGAGACTCCATCTTAAAAGGGAGAACAGGTGAACTAACAGTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR TCA 90 bp TTAATCTCAGGTCCTCACACACACAAGACTTGGAGGACTCAGAGGGATTTGAGTAGAGCAGTCTGTCTCTaGTGTGCTGTATGCCCAGGC +
Preference number: 2 (lower is better)
Translates to: LISGPHTHKTWRTQRDLSRAVCL*CAVCPG
Trigger: GCCTGGGCATACAGCACATCAGAGACAGACTGCTCT...ACTCAAATCCCTCTGAGTCCTCCAAGTCTTGTGTGTGTGAGGACCTGAGATTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR TCA 90 bp TTAATCTCAGGTCCTCACACACACAAGACTTGGAGGACTCAGAGGGATTTGAGTACCCCTCCACAATGCTaGCAGCATCTCAGGCAAAGC +
Preference number: 2 (lower is better)
Translates to: LISGPHTHKTWRTQRDLSTPPQC*QHLRQS
Trigger: GCTTTGCCTGAGATGCTGTCAGCATTGTGGAGGGGT...ACTCAAATCCCTCTGAGTCCTCCAAGTCTTGTGTGTGTGAGGACCTGAGATTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CCA 90 bp CACACTGTTAGTTCACCTGTTCTCCCTTTTAAGATGGAGTCTCACAGAGCCCAGACACACACACTGTACTaGGGCGCTGAGGAAGTGTTG +
Preference number: 2 (lower is better)
Translates to: HTVSSPVLPFKMESHRAQTHTLY*GAEEVL
Trigger: CAACACTTCCTCAGCGCCCCAGTACAGTGTGTGTGT...CTGGGCTCTGTGAGACTCCATCTTAAAAGGGAGAACAGGTGAACTAACAGTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CCA 90 bp CACACTGTTAGTTCACCTGTTCTCCCTTTTAAGATGGAGTCTCACAGAGCCCAGCTTCTCACCTGCCAATaGTGTGTGTGTGAGAGAGAG +
Preference number: 2 (lower is better)
Translates to: HTVSSPVLPFKMESHRAQLLTCQ*CVCERE
Trigger: CTCTCTCTCACACACACACCATTGGCAGGTGAGAAG...CTGGGCTCTGTGAGACTCCATCTTAAAAGGGAGAACAGGTGAACTAACAGTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CCA 90 bp TTAATCTCAGGTCCTCACACACACAAGACTTGGAGGACTCAGAGGGATTTGAGTAGGTGGCATACACTCTaGACCAGAGCTGACCCTTCT +
Preference number: 2 (lower is better)
Translates to: LISGPHTHKTWRTQRDLSRWHTL*TRADPS
Trigger: AGAAGGGTCAGCTCTGGTCCAGAGTGTATGCCACCT...ACTCAAATCCCTCTGAGTCCTCCAAGTCTTGTGTGTGTGAGGACCTGAGATTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR GCA 90 bp TTAATCTCAGGTCCTCACACACACAAGACTTGGAGGACTCAGAGGGATTTGAGTACAAAGCTTGAAGGATaGCCTGGTCTCCTGGAAAGG +
Preference number: 2 (lower is better)
Translates to: LISGPHTHKTWRTQRDLSTKLEG*PGLLER
Trigger: CCTTTCCAGGAGACCAGGGCATCCTTCAAGCTTTGT...ACTCAAATCCCTCTGAGTCCTCCAAGTCTTGTGTGTGTGAGGACCTGAGATTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CCA 90 bp TTAATCTCAGGTCCTCACACACACAAGACTTGGAGGACTCAGAGGGATTTGAGTATGACAGAAGGCAGGTaGCATACACTCTGGACCAGA +
Preference number: 2 (lower is better)
Translates to: LISGPHTHKTWRTQRDLSMTEGR*HTLWTR
Trigger: TCTGGTCCAGAGTGTATGCCACCTGCCTTCTGTCAT...ACTCAAATCCCTCTGAGTCCTCCAAGTCTTGTGTGTGTGAGGACCTGAGATTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR GCA 90 bp TTAATCTCAGGTCCTCACACACACAAGACTTGGAGGACTCAGAGGGATTTGAGTGATGCTCCACTGACCTaGTCAAAGCAAAGGACTGAT +
Preference number: 2 (lower is better)
Translates to: LISGPHTHKTWRTQRDLSDAPLT*SKQRTD
Trigger: ATCAGTCCTTTGCTTTGAGCAGGTCAGTGGAGCATC...ACTCAAATCCCTCTGAGTCCTCCAAGTCTTGTGTGTGTGAGGACCTGAGATTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR GCA 90 bp GACTTTTATGCCTGCATGTATGTATGTATGTATGTATGTATGTATGTGTGTGTGAGGATCCCTGGGAACTaGGTTCACACGGCGGGTGTC +
Preference number: 2 (lower is better)
Translates to: DFYACMYVCMYVCMYVCVRIPGN*VHTAGV
Trigger: GACACCCGCCGTGTGAACGCAGTTCCCAGGGATCCT...CACACACACATACATACATACATACATACATACATACATGCAGGCATAAAAGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132831.2
3UTR CCA 72 bp GGCTGGGGTCAGAGGGCACGAGTGCAGCAGGGACGCTaGAGGGTTCTCCTCTCCGGGCTGTGGGGTCGGGAG +
Preference number: 3 (lower is better)
Translates to: GWGQRARVQQGR*RVLLSGLWGRE
Trigger: CTCCCGACCCCACAGCCCGGAGAGGAGAACCCTCCAGCGTCCCTGCTGCACTCGTGCCCTCTGACCCCAGCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132831.2
3UTR CCA 72 bp CAGCAGGGACGCTGGAGGGTTCTCCTCTCCGGGCTGTaGGGTCGGGAGAGGATCCCTGGGAACTGCGTTCAC +
Preference number: 3 (lower is better)
Translates to: QQGRWRVLLSGL*GRERIPGNCVH
Trigger: GTGAACGCAGTTCCCAGGGATCCTCTCCCGACCCCACAGCCCGGAGAGGAGAACCCTCCAGCGTCCCTGCTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132831.2
3UTR TCA 72 bp GTGGCTTGGGCCAGCCTGTTGTGCGGATGCCGGCTGTaGGAGAACCGAGTCAGGAGCCAGTGGAGGCAGGCA +
Preference number: 3 (lower is better)
Translates to: VAWASLLCGCRL*ENRVRSQWRQA
Trigger: TGCCTGCCTCCACTGGCTCCTGACTCGGTTCTCTCACAGCCGGCATCCGCACAACAGGCTGGCCCAAGCCAC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR GCA 72 bp GCCCAGGCCACGGATGCTCAGCCAGCGAGGGGCACTTaGAGCAACAGCACCAGGCAGCGCTGGAGACACATT +
Preference number: 3 (lower is better)
Translates to: AQATDAQPARGT*SNSTRQRWRHI
Trigger: AATGTGTCTCCAGCGCTGCCTGGTGCTGTTGCTGCAAGTGCCCCTCGCTGGCTGAGCATCCGTGGCCTGGGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR CCA 72 bp CAGGTCGCTGCCCACTTCCGCTTCAGCAGTGGGGGATaGTCCCAAGGCTCCGTACCTGTGCCGTTCCCTTTG +
Preference number: 3 (lower is better)
Translates to: QVAAHFRFSSGG*SQGSVPVPFPL
Trigger: CAAAGGGAACGGCACAGGTACGGAGCCTTGGGACCATCCCCCACTGCTGAAGCGGAAGTGGGCAGCGACCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR CCA 72 bp AGGACCTCAGGTCGCTGCCCACTTCCGCTTCAGCAGTaGGGGATGGTCCCAAGGCTCCGTACCTGTGCCGTT +
Preference number: 3 (lower is better)
Translates to: RTSGRCPLPLQQ*GMVPRLRTCAV
Trigger: AACGGCACAGGTACGGAGCCTTGGGACCATCCCCCACTGCTGAAGCGGAAGTGGGCAGCGACCTGAGGTCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR TCA 72 bp GACCTCGCTGCCTGCCTGCTCAGAGCAGTCTGTCTCTaGTGTGCTGTATGCCCAGGCCACGGATGCTCAGCC +
Preference number: 3 (lower is better)
Translates to: DLAACLLRAVCL*CAVCPGHGCSA
Trigger: GGCTGAGCATCCGTGGCCTGGGCATACAGCACATCAGAGACAGACTGCTCTGAGCAGGCAGGCAGCGAGGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR GCA 72 bp CGCTGCCTGCCTGCTCAGAGCAGTCTGTCTCTGATGTaGTGTATGCCCAGGCCACGGATGCTCAGCCAGCGA +
Preference number: 3 (lower is better)
Translates to: RCLPAQSSLSLM*CMPRPRMLSQR
Trigger: TCGCTGGCTGAGCATCCGTGGCCTGGGCATACAGCACATCAGAGACAGACTGCTCTGAGCAGGCAGGCAGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR GCA 72 bp TCAGCAGTGGGGGATGGTCCCAAGGCTCCGTACCTGTaGCGTTCCCTTTGGAAGGCTGGGCCTGTTAGGCTC +
Preference number: 3 (lower is better)
Translates to: SAVGDGPKAPYL*RSLWKAGPVRL
Trigger: GAGCCTAACAGGCCCAGCCTTCCAAAGGGAACGGCACAGGTACGGAGCCTTGGGACCATCCCCCACTGCTGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR CCA 72 bp TTGCAGCAACAGCACCAGGCAGCGCTGGAGACACATTaGCCCCTTACTAGCTGGGCGGCCACCCCAAGCTTC +
Preference number: 3 (lower is better)
Translates to: LQQQHQAALETH*PLTSWAATPSF
Trigger: GAAGCTTGGGGTGGCCGCCCAGCTAGTAAGGGGCCAATGTGTCTCCAGCGCTGCCTGGTGCTGTTGCTGCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR GCA 72 bp GTGGCTGCATCTGATCCATCCCACCCTACACTTCCGTaGACCTCCTGCAGCTCCCACCCCTCCACAATGCTG +
Preference number: 3 (lower is better)
Translates to: VAASDPSHPTLP*TSCSSHPSTML
Trigger: CAGCATTGTGGAGGGGTGGGAGCTGCAGGAGGTGCACGGAAGTGTAGGGTGGGATGGATCAGATGCAGCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR GCA 72 bp CGGGAGCCATATCCGGCCCCTGATGCTCCACTGACCTaGTCAAAGCAAAGGACTGATACGCCACTGCAGGGG +
Preference number: 3 (lower is better)
Translates to: REPYPAPDAPLT*SKQRTDTPLQG
Trigger: CCCCTGCAGTGGCGTATCAGTCCTTTGCTTTGAGCAGGTCAGTGGAGCATCAGGGGCCGGATATGGCTCCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CAA 90 bp CTACAGAGGCTCCTTTCTCCCTCCCCCAACCCCCTTGGTGCTAATCTCAAACGTGGCGCTGAGGAAGTGTaGGTGTGGAGGCCCTGGGGT +
Preference number: 3 (lower is better)
Translates to: LQRLLSPSPNPLGANLKRGAEEV*VWRPWG
Trigger: ACCCCAGGGCCTCCACACCAACACTTCCTCAGCGCC...ACGTTTGAGATTAGCACCAAGGGGGTTGGGGGAGGGAGAAAGGAGCCTCTGTAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CAA 90 bp TTCCCTGGAAGGATGGGAACTGAAGAGCATCTCACTGTCCCAGGGGATGCTCCAGGCGCTGAGGAAGTGTaGGTGTGGAGGCCCTGGGGT +
Preference number: 3 (lower is better)
Translates to: FPGRMGTEEHLTVPGDAPGAEEV*VWRPWG
Trigger: ACCCCAGGGCCTCCACACCAACACTTCCTCAGCGCC...TGGAGCATCCCCTGGGACAGTGAGATGCTCTTCAGTTCCCATCCTTCCAGGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR TCA 72 bp GTCAGGTTTCCAAGCCCGACTCCCAGTGGCTGCATCTaGTCCATCCCACCCTACACTTCCGTGCACCTCCTG +
Preference number: 3 (lower is better)
Translates to: VRFPSPTPSGCI*SIPPYTSVHLL
Trigger: CAGGAGGTGCACGGAAGTGTAGGGTGGGATGGATCAGATGCAGCCACTGGGAGTCGGGCTTGGAAACCTGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR CCA 72 bp CACACACTGTACTGGGGCGCTGAGGAAGTGTTGGTGTaGAGGCCCTGGGGTCATCAGATAGAGGTGGTGGGA +
Preference number: 3 (lower is better)
Translates to: HTLYWGAEEVLV*RPWGHQIEVVG
Trigger: TCCCACCACCTCTATCTGATGACCCCAGGGCCTCCACACCAACACTTCCTCAGCGCCCCAGTACAGTGTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CAA 90 bp CAAACCAGAGAGGACAGAAGGGCCCATCCTCCCTTCCCTCTTAGGACATCCAGGCCTGGTGCTCACATGTaGGACGTTCTCCCATCGGCT +
Preference number: 3 (lower is better)
Translates to: QTREDRRAHPPFPLRTSRPGAHM*DVLPSA
Trigger: AGCCGATGGGAGAACGTCCAACATGTGAGCACCAGG...CCTGGATGTCCTAAGAGGGAAGGGAGGATGGGCCCTTCTGTCCTCTCTGGTTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CAA 90 bp CGCTTCAGCAGTGGGGGATGGTCCCAAGGCTCCGTACCTGTGCCGTTCCCTTTGATCCAGGCAGTGGGATaGCTTAGCATCATGGCCATT +
Preference number: 3 (lower is better)
Translates to: RFSSGGWSQGSVPVPFPLIQAVG*LSIMAI
Trigger: AATGGCCATGATGCTAAGCAATCCCACTGCCTGGAT...CAAAGGGAACGGCACAGGTACGGAGCCTTGGGACCATCCCCCACTGCTGAAGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR TCA 72 bp CGGCATGAGCGGGATGCTTGGTGCATCCTGCTGTTTTaGAGGTCAGCTAGGTGGGTGAAGCCTGGTGCTCAC +
Preference number: 3 (lower is better)
Translates to: RHERDAWCILLF*RSARWVKPGAH
Trigger: GTGAGCACCAGGCTTCACCCACCTAGCTGACCTTCAAAACAGCAGGATGCACCAAGCATCCCGCTCATGCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR TCA 72 bp ACCCTAGGGCTGATGTGGAGATGCCAGGAGGCGGCATaGGCGGGATGCTTGGTGCATCCTGCTGTTTTGAAG +
Preference number: 3 (lower is better)
Translates to: TLGLMWRCQEAA*AGCLVHPAVLK
Trigger: CTTCAAAACAGCAGGATGCACCAAGCATCCCGCTCATGCCGCCTCCTGGCATCTCCACATCAGCCCTAGGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR GCA 72 bp TCTGATCCATCCCACCCTACACTTCCGTGCACCTCCTaGAGCTCCCACCCCTCCACAATGCTGACAGCATCT +
Preference number: 3 (lower is better)
Translates to: SDPSHPTLPCTS*SSHPSTMLTAS
Trigger: AGATGCTGTCAGCATTGTGGAGGGGTGGGAGCTGCAGGAGGTGCACGGAAGTGTAGGGTGGGATGGATCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR GCA 72 bp CTGATACGCCACTGCAGGGGACACTTTCCCACAGCCTaGTGTCTGGGAAACTGCCTGAGCCCTCTAAACTGG +
Preference number: 3 (lower is better)
Translates to: LIRHCRGHFPTA*CLGNCLSPLNW
Trigger: CCAGTTTAGAGGGCTCAGGCAGTTTCCCAGACAGCAGGCTGTGGGAAAGTGTCCCCTGCAGTGGCGTATCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR CCA 72 bp GATGCCCTGGTCTCCTGGAAAGGGTGGGTGTGTTACTaGTACCAGGAAAGTGCCCTGGAGACCAAGCAGAGG +
Preference number: 3 (lower is better)
Translates to: DALVSWKGWVCY*YQESALETKQR
Trigger: CCTCTGCTTGGTCTCCAGGGCACTTTCCTGGTACCAGTAACACACCCACCCTTTCCAGGAGACCAGGGCATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR CCA 72 bp GCCTGCTGTCTGGGAAACTGCCTGAGCCCTCTAAACTaGATGAACCCCACTGGCCATCTGAGGTGTTCCCTG +
Preference number: 3 (lower is better)
Translates to: ACCLGNCLSPLN*MNPTGHLRCSL
Trigger: CAGGGAACACCTCAGATGGCCAGTGGGGTTCATCCAGTTTAGAGGGCTCAGGCAGTTTCCCAGACAGCAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR TCA 72 bp TCACAAAGGTGCAGTCTGTCCATGGCTCCTGCCATTTaGCCTCGCTGCCTGCCTGCTCAGAGCAGTCTGTCT +
Preference number: 3 (lower is better)
Translates to: SQRCSLSMAPAI*PRCLPAQSSLS
Trigger: AGACAGACTGCTCTGAGCAGGCAGGCAGCGAGGTCAAATGGCAGGAGCCATGGACAGACTGCACCTTTGTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR TCA 72 bp CCAGGCTACCCTGGGACTCGCTATGTGGCCAAGGAATaGTCTTGTCCTTCTAATCCTCCTGCCTCTCCCACC +
Preference number: 3 (lower is better)
Translates to: PGYPGTRYVAKE*SCPSNPPASPT
Trigger: GGTGGGAGAGGCAGGAGGATTAGAAGGACAAGATCATTCCTTGGCCACATAGCGAGTCCCAGGGTAGCCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR TCA 72 bp TATACCGGGAGCCATATCCGGCCCCTGATGCTCCACTaGCCTGCTCAAAGCAAAGGACTGATACGCCACTGC +
Preference number: 3 (lower is better)
Translates to: YTGSHIRPLMLH*PAQSKGLIRHC
Trigger: GCAGTGGCGTATCAGTCCTTTGCTTTGAGCAGGTCAGTGGAGCATCAGGGGCCGGATATGGCTCCCGGTATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR CCA 72 bp GATAAAAACCAGTTGCAGGCAGTCCCACCACTCTCCTaGGTACCCCCTCAAACCAGAGAGGACAGAAGGGCC +
Preference number: 3 (lower is better)
Translates to: DKNQLQAVPPLS*VPPQTREDRRA
Trigger: GGCCCTTCTGTCCTCTCTGGTTTGAGGGGGTACCCAGGAGAGTGGTGGGACTGCCTGCAACTGGTTTTTATC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CAA 90 bp ATACGCCACTGCAGGGGACACTTTCCCACAGCCTGCTGTCTGGGAAACTGCCTGGGGACATCACAAAGTTaGGAGTCAGGTTTCCAAGCC +
Preference number: 3 (lower is better)
Translates to: IRHCRGHFPTACCLGNCLGTSQS*ESGFQA
Trigger: GGCTTGGAAACCTGACTCCAAACTTTGTGATGTCCC...CAGGCAGTTTCCCAGACAGCAGGCTGTGGGAAAGTGTCCCCTGCAGTGGCGTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CAA 90 bp AGCCTGCTGTCTGGGAAACTGCCTGAGCCCTCTAAACTGGATGAACCCCACTGGGGGTGTGTAAAACCCTaGGCACACTCTCCAGTAACC +
Preference number: 3 (lower is better)
Translates to: SLLSGKLPEPSKLDEPHWGCVKP*AHSPVT
Trigger: GGTTACTGGAGAGTGTGCCAAGGGTTTTACACACCC...CCAGTGGGGTTCATCCAGTTTAGAGGGCTCAGGCAGTTTCCCAGACAGCAGGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CAA 90 bp CCTGAGCCCTCTAAACTGGATGAACCCCACTGGCCATCTGAGGTGTTCCCTGGAGGGTGTGTAAAACCCTaGGCACACTCTCCAGTAACC +
Preference number: 3 (lower is better)
Translates to: PEPSKLDEPHWPSEVFPGGCVKP*AHSPVT
Trigger: GGTTACTGGAGAGTGTGCCAAGGGTTTTACACACCC...TCCAGGGAACACCTCAGATGGCCAGTGGGGTTCATCCAGTTTAGAGGGCTCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR GCA 72 bp AAAGGAATCACAAAGGTGCAGTCTGTCCATGGCTCCTaGCATTTGACCTCGCTGCCTGCCTGCTCAGAGCAG +
Preference number: 3 (lower is better)
Translates to: KGITKVQSVHGS*HLTSLPACSEQ
Trigger: CTGCTCTGAGCAGGCAGGCAGCGAGGTCAAATGGCAGGAGCCATGGACAGACTGCACCTTTGTGATTCCTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CAA 90 bp CCTGAGCCCTCTAAACTGGATGAACCCCACTGGCCATCTGAGGTGTTCCCTGGATCTGATAAAAACCAGTaGCAGGCAGTCCCACCACTC +
Preference number: 3 (lower is better)
Translates to: PEPSKLDEPHWPSEVFPGSDKNQ*QAVPPL
Trigger: GAGTGGTGGGACTGCCTGCAACTGGTTTTTATCAGA...TCCAGGGAACACCTCAGATGGCCAGTGGGGTTCATCCAGTTTAGAGGGCTCAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR TCA 72 bp GGTGCATCCTGCTGTTTTGAAGGTCAGCTAGGTGGGTaGAGCCTGGTGCTCACATGTTGGACGTTCTCCCAT +
Preference number: 3 (lower is better)
Translates to: GASCCFEGQLGG*SLVLTCWTFSH
Trigger: ATGGGAGAACGTCCAACATGTGAGCACCAGGCTTCACCCACCTAGCTGACCTTCAAAACAGCAGGATGCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR TCA 72 bp CGTGCACCTCCTGCAGCTCCCACCCCTCCACAATGCTaGCAGCATCTCAGGCAAAGCAATCTCTCTGATAAA +
Preference number: 3 (lower is better)
Translates to: RAPPAAPTPPQC*QHLRQSNLSDK
Trigger: TTTATCAGAGAGATTGCTTTGCCTGAGATGCTGTCAGCATTGTGGAGGGGTGGGAGCTGCAGGAGGTGCACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR TCA 72 bp TGTGTCCCTGGAGCTGGAGTTGTGAGCCCTTTGGTGTaGGTCCTGGGTCCTCTTAAAGATGCAAGCCAAGCA +
Preference number: 3 (lower is better)
Translates to: CVPGAGVVSPLV*VLGPLKDASQA
Trigger: TGCTTGGCTTGCATCTTTAAGAGGACCCAGGACTCACACCAAAGGGCTCACAACTCCAGCTCCAGGGACACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR CCA 72 bp ACCAGAGCTGACCCTTCTGAGACTGACTGTCCCAGGTaGATCCCGGGAGAAAAGGAATCACAAAGGTGCAGT +
Preference number: 3 (lower is better)
Translates to: TRADPSETDCPR*IPGEKESQRCS
Trigger: ACTGCACCTTTGTGATTCCTTTTCTCCCGGGATCCACCTGGGACAGTCAGTCTCAGAAGGGTCAGCTCTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR CCA 72 bp GACAGAAGAATGACAGAAGGCAGGTGGCATACACTCTaGACCAGAGCTGACCCTTCTGAGACTGACTGTCCC +
Preference number: 3 (lower is better)
Translates to: DRRMTEGRWHTL*TRADPSETDCP
Trigger: GGGACAGTCAGTCTCAGAAGGGTCAGCTCTGGTCCAGAGTGTATGCCACCTGCCTTCTGTCATTCTTCTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR CCA 72 bp CCCACACTGTTAGTTCACCTGTTCTCCCTTTTAAGATaGAGTCTCACAGAGCCCAGGCTACCCTGGGACTCG +
Preference number: 3 (lower is better)
Translates to: PTLLVHLFSLLR*SLTEPRLPWDS
Trigger: CGAGTCCCAGGGTAGCCTGGGCTCTGTGAGACTCCATCTTAAAAGGGAGAACAGGTGAACTAACAGTGTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR GCA 72 bp ATCTCAGGCAAAGCAATCTCTCTGATAAAAACCAGTTaGAGGCAGTCCCACCACTCTCCTGGGTACCCCCTC +
Preference number: 3 (lower is better)
Translates to: ISGKAISLIKTS*RQSHHSPGYPL
Trigger: GAGGGGGTACCCAGGAGAGTGGTGGGACTGCCTGCAACTGGTTTTTATCAGAGAGATTGCTTTGCCTGAGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR CCA 72 bp CTTTTAAGATGGAGTCTCACAGAGCCCAGGCTACCCTaGGACTCGCTATGTGGCCAAGGAATGATCTTGTCC +
Preference number: 3 (lower is better)
Translates to: LLRWSLTEPRLP*DSLCGQGMILS
Trigger: GGACAAGATCATTCCTTGGCCACATAGCGAGTCCCAGGGTAGCCTGGGCTCTGTGAGACTCCATCTTAAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR TCA 72 bp GTAGCATTGAGCACCAGCGGCTGGAAGCAGGTTAAATaGAGGGAGACTGTGTATGTATGGGTAACTCCTCCA +
Preference number: 3 (lower is better)
Translates to: VALSTSGWKQVK*RETVYVWVTPP
Trigger: TGGAGGAGTTACCCATACATACACAGTCTCCCTTCATTTAACCTGCTTCCAGCCGCTGGTGCTCAATGCTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR TCA 72 bp AGGGCTTCCTGCACACTAGGCAAGTGCTCTACCGACTaGGCTACATCTTCAGTCCTGCTGTTAGTTTTCTCA +
Preference number: 3 (lower is better)
Translates to: RASCTLGKCSTD*ATSSVLLLVFS
Trigger: TGAGAAAACTAACAGCAGGACTGAAGATGTAGCTCAGTCGGTAGAGCACTTGCCTAGTGTGCAGGAAGCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR TCA 72 bp CTCACACACACAAGACTTGGAGGACTCAGAGGGATTTaGGTCTGTGACCCACAATATACCGGGAGCCATATC +
Preference number: 3 (lower is better)
Translates to: LTHTRLGGLRGI*VCDPQYTGSHI
Trigger: GATATGGCTCCCGGTATATTGTGGGTCACAGACTCAAATCCCTCTGAGTCCTCCAAGTCTTGTGTGTGTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CAA 90 bp CACACTGTTAGTTCACCTGTTCTCCCTTTTAAGATGGAGTCTCACAGAGCCCAGGGGACATCACAAAGTTaGGAGTCAGGTTTCCAAGCC +
Preference number: 3 (lower is better)
Translates to: HTVSSPVLPFKMESHRAQGTSQS*ESGFQA
Trigger: GGCTTGGAAACCTGACTCCAAACTTTGTGATGTCCC...CTGGGCTCTGTGAGACTCCATCTTAAAAGGGAGAACAGGTGAACTAACAGTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR-3UTR CAA 90 bp TTAATCTCAGGTCCTCACACACACAAGACTTGGAGGACTCAGAGGGATTTGAGTATCCAGGCAGTGGGATaGCTTAGCATCATGGCCATT +
Preference number: 3 (lower is better)
Translates to: LISGPHTHKTWRTQRDLSIQAVG*LSIMAI
Trigger: AATGGCCATGATGCTAAGCAATCCCACTGCCTGGAT...ACTCAAATCCCTCTGAGTCCTCCAAGTCTTGTGTGTGTGAGGACCTGAGATTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR GCA 90 bp GGGTTCTCCTCTCCGGGCTGTGGGGTCGGGAGAGGATCCCTGGGAACTGCGTTCCCACGCTGCTGTGCCTaGGTGGAGGAAGGGGGCTGT +
Preference number: 4 (lower is better)
Translates to: GFSSPGCGVGRGSLGTAFPRCCA*VEEGGC
Trigger: ACAGCCCCCTTCCTCCACGCAGGCACAGCAGCGTGG...GAACGCAGTTCCCAGGGATCCTCTCCCGACCCCACAGCCCGGAGAGGAGAACCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000132831.2
CDS-3UTR CCA 90 bp CTGGGGTCAGAGGGCACGAGTGCAGCAGGGACGCTGGAGGGTTCTCCTCTCCGGGCAGCACAGGGCTACTaGACCACCACGCTGCTGTGC +
Preference number: 4 (lower is better)
Translates to: LGSEGTSAAGTLEGSPLRAAQGY*TTTLLC
Trigger: GCACAGCAGCGTGGTGGTCCAGTAGCCCTGTGCTGC...CCGGAGAGGAGAACCCTCCAGCGTCCCTGCTGCACTCGTGCCCTCTGACCCCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132831.2
CDS-3UTR GCA 90 bp GAACCCCATCTGCCCAGAGACACTGAGGAGCCCTGGCCTGCCTCTGCAGAGGGAACCACCACGCTGCTGTaGCTGCGTGGAGGAAGGGGG +
Preference number: 4 (lower is better)
Translates to: EPHLPRDTEEPWPASAEGTTTLL*LRGGRG
Trigger: CCCCCTTCCTCCACGCAGGCACAGCAGCGTGGTGGT...TCCCTCTGCAGAGGCAGGCCAGGGCTCCTCAGTGTCTCTGGGCAGATGGGGTTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132831.2
CDS-3UTR CCA 90 bp CCTCTCCGGGCTGTGGGGTCGGGAGAGGATCCCTGGGAACTGCGTTCACACGGCTCTCGGAACTCAGCTTaGCAGATGGCGCAGACGGCG +
Preference number: 4 (lower is better)
Translates to: PLRAVGSGEDPWELRSHGSRNSA*QMAQTA
Trigger: CGCCGTCTGCGCCATCTGCCAAGCTGAGTTCCGAGA...GCCGTGTGAACGCAGTTCCCAGGGATCCTCTCCCGACCCCACAGCCCGGAGAGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132831.2
CDS-3UTR TCA 90 bp CAGGGGACACTTTCCCACAGCCTGCTGTCTGGGAAACTGCCTGAGCCCTCTAAACGCTGGCCTCGGGGCTaGGCGCCTGGCTGCGACTTC +
Preference number: 4 (lower is better)
Translates to: QGTLSHSLLSGKLPEPSKRWPRG*APGCDF
Trigger: GAAGTCGCAGCCAGGCGCTCAGCCCCGAGGCCAGCG...TTTAGAGGGCTCAGGCAGTTTCCCAGACAGCAGGCTGTGGGAAAGTGTCCCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR TCA 90 bp CCTCTCCGGGCTGTGGGGTCGGGAGAGGATCCCTGGGAACTGCGTTCACACGGCTCCAGGACATCCGTGTaGGCCTGGCACAGGAGAATC +
Preference number: 4 (lower is better)
Translates to: PLRAVGSGEDPWELRSHGSRTSV*AWHRRI
Trigger: GATTCTCCTGTGCCAGGCTCACACGGATGTCCTGGA...GCCGTGTGAACGCAGTTCCCAGGGATCCTCTCCCGACCCCACAGCCCGGAGAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132831.2
CDS-3UTR GCA 90 bp GGAGGCAGGAGAAAGTCCTGGAGGCTGTTTCCCAGGCATCCTTGGGGCTGGGCTGGCAGAGCGGGCAGGTaGGTTCCCTGTCCAGCCACA +
Preference number: 4 (lower is better)
Translates to: GGRRKSWRLFPRHPWGWAGRAGR*VPCPAT
Trigger: TGTGGCTGGACAGGGAACGCACCTGCCCGCTCTGCC...AGCCCAGCCCCAAGGATGCCTGGGAAACAGCCTCCAGGACTTTCTCCTGCCTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR TCA 90 bp CTACAGAGGCTCCTTTCTCCCTCCCCCAACCCCCTTGGTGCTAATCTCAAACGTCGCTGGCCTCGGGGCTaGGCGCCTGGCTGCGACTTC +
Preference number: 4 (lower is better)
Translates to: LQRLLSPSPNPLGANLKRRWPRG*APGCDF
Trigger: GAAGTCGCAGCCAGGCGCTCAGCCCCGAGGCCAGCG...ACGTTTGAGATTAGCACCAAGGGGGTTGGGGGAGGGAGAAAGGAGCCTCTGTAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR GCA 90 bp CAGGGGACACTTTCCCACAGCCTGCTGTCTGGGAAACTGCCTGAGCCCTCTAAATGGTCCCCACCCACGTaGTGCAGCAGGGAGCCCCCG +
Preference number: 4 (lower is better)
Translates to: QGTLSHSLLSGKLPEPSKWSPPT*CSREPP
Trigger: CGGGGGCTCCCTGCTGCAGCACGTGGGTGGGGACCA...TTTAGAGGGCTCAGGCAGTTTCCCAGACAGCAGGCTGTGGGAAAGTGTCCCCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR GCA 90 bp CAGGGGACACTTTCCCACAGCCTGCTGTCTGGGAAACTGCCTGAGCCCTCTAAAGGCGGTGGTGGTAGGTaGTTCCTTCGGCGCTGCGGC +
Preference number: 4 (lower is better)
Translates to: QGTLSHSLLSGKLPEPSKGGGGR*FLRRCG
Trigger: GCCGCAGCGCCGAAGGAAGCACCTACCACCACCGCC...TTTAGAGGGCTCAGGCAGTTTCCCAGACAGCAGGCTGTGGGAAAGTGTCCCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR GCA 90 bp CGCTTCAGCAGTGGGGGATGGTCCCAAGGCTCCGTACCTGTGCCGTTCCCTTTGCTTGAGCTCAGACAGTaGGGGTGCTGGAGTTCCGGG +
Preference number: 4 (lower is better)
Translates to: RFSSGGWSQGSVPVPFPLLELRQ*GCWSSG
Trigger: CCCGGAACTCCAGCACCCGCACTGTCTGAGCTCAAG...CAAAGGGAACGGCACAGGTACGGAGCCTTGGGACCATCCCCCACTGCTGAAGCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR GCA 90 bp AGAAGGGCCCATCCTCCCTTCCCTCTTAGGACATCCAGGCAGTGGGATTGCTTAGCCTCCGTGCACTGCTaGCCTGTGGCTCGGACCCCG +
Preference number: 4 (lower is better)
Translates to: RRAHPPFPLRTSRQWDCLASVHC*PVARTP
Trigger: CGGGGTCCGAGCCACAGGGCAGCAGTGCACGGAGGC...TAAGCAATCCCACTGCCTGGATGTCCTAAGAGGGAAGGGAGGATGGGCCCTTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR GCA 90 bp CAAACCAGAGAGGACAGAAGGGCCCATCCTCCCTTCCCTCTTAGGACATCCAGGCCAGCCTCCGTGCACTaGTGCCCTGTGGCTCGGACC +
Preference number: 4 (lower is better)
Translates to: QTREDRRAHPPFPLRTSRPASVH*CPVART
Trigger: GGTCCGAGCCACAGGGCAGCAGTGCACGGAGGCTGG...CCTGGATGTCCTAAGAGGGAAGGGAGGATGGGCCCTTCTGTCCTCTCTGGTTTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR GCA 90 bp AGGCAGGCAGAATTCCAGAGGCTTCTGTGCGGTCACCTGTGCTATTTCGTCCCAGGCGGTGGTGGTAGGTaGTTCCTTCGGCGCTGCGGC +
Preference number: 4 (lower is better)
Translates to: RQAEFQRLLCGHLCYFVPGGGGR*FLRRCG
Trigger: GCCGCAGCGCCGAAGGAAGCACCTACCACCACCGCC...TGGGACGAAATAGCACAGGTGACCGCACAGAAGCCTCTGGAATTCTGCCTGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR GCA 90 bp GGAGGCAGGAGAAAGTCCTGGAGGCTGTTTCCCAGGCATCCTTGGGGCTGGGCTTGCTGGCCATCCCGATaGACACAGCAATGCCCAGCT +
Preference number: 4 (lower is better)
Translates to: GGRRKSWRLFPRHPWGWACWPSR*TQQCPA
Trigger: AGCTGGGCATTGCTGTGTGCATCGGGATGGCCAGCA...AGCCCAGCCCCAAGGATGCCTGGGAAACAGCCTCCAGGACTTTCTCCTGCCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR GCA 90 bp TTCCCTGGAAGGATGGGAACTGAAGAGCATCTCACTGTCCCAGGGGATGCTCCACCAGCCTCCGTGCACTaGTGCCCTGTGGCTCGGACC +
Preference number: 4 (lower is better)
Translates to: FPGRMGTEEHLTVPGDAPPASVH*CPVART
Trigger: GGTCCGAGCCACAGGGCAGCAGTGCACGGAGGCTGG...TGGAGCATCCCCTGGGACAGTGAGATGCTCTTCAGTTCCCATCCTTCCAGGGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp CCTGAGCCCTCTAAACTGGATGAACCCCACTGGCCATCTGAGGTGTTCCCTGGACCATGGTGGAAGTGGTaGTGGGCCTGGCGGTGGTGG +
Preference number: 4 (lower is better)
Translates to: PEPSKLDEPHWPSEVFPGPWWKW*WAWRWW
Trigger: CCACCACCGCCAGGCCCACCACCACTTCCACCATGG...TCCAGGGAACACCTCAGATGGCCAGTGGGGTTCATCCAGTTTAGAGGGCTCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp AGCCTGCTGTCTGGGAAACTGCCTGAGCCCTCTAAACTGGATGAACCCCACTGGCCATGGTGGAAGTGGTaGTGGGCCTGGCGGTGGTGG +
Preference number: 4 (lower is better)
Translates to: SLLSGKLPEPSKLDEPHWPWWKW*WAWRWW
Trigger: CCACCACCGCCAGGCCCACCACCACTTCCACCATGG...CCAGTGGGGTTCATCCAGTTTAGAGGGCTCAGGCAGTTTCCCAGACAGCAGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp CAAACCAGAGAGGACAGAAGGGCCCATCCTCCCTTCCCTCTTAGGACATCCAGGCGGTGGGCACCATGGTaGAAGTGGTGGTGGGCCTGG +
Preference number: 4 (lower is better)
Translates to: QTREDRRAHPPFPLRTSRRWAPW*KWWWAW
Trigger: CCAGGCCCACCACCACTTCCACCATGGTGCCCACCG...CCTGGATGTCCTAAGAGGGAAGGGAGGATGGGCCCTTCTGTCCTCTCTGGTTTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp AGAAGGGCCCATCCTCCCTTCCCTCTTAGGACATCCAGGCAGTGGGATTGCTTACCGCGGTGGGCACCATaGTGGAAGTGGTGGTGGGCC +
Preference number: 4 (lower is better)
Translates to: RRAHPPFPLRTSRQWDCLPRWAP*WKWWWA
Trigger: GGCCCACCACCACTTCCACCATGGTGCCCACCGCGG...TAAGCAATCCCACTGCCTGGATGTCCTAAGAGGGAAGGGAGGATGGGCCCTTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp CTACAGAGGCTCCTTTCTCCCTCCCCCAACCCCCTTGGTGCTAATCTCAAACGTAGGGAGCCCCCGCGGTaGGCACCATGGTGGAAGTGG +
Preference number: 4 (lower is better)
Translates to: LQRLLSPSPNPLGANLKRREPPR*APWWKW
Trigger: CCACTTCCACCATGGTGCCCACCGCGGGGGCTCCCT...ACGTTTGAGATTAGCACCAAGGGGGTTGGGGGAGGGAGAAAGGAGCCTCTGTAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp ATACGCCACTGCAGGGGACACTTTCCCACAGCCTGCTGTCTGGGAAACTGCCTGTCTGAGTGTCCACGGTaGTCCCCACCCACGTGCTGC +
Preference number: 4 (lower is better)
Translates to: IRHCRGHFPTACCLGNCLSECPR*SPPTCC
Trigger: GCAGCACGTGGGTGGGGACCACCGTGGACACTCAGA...CAGGCAGTTTCCCAGACAGCAGGCTGTGGGAAAGTGTCCCCTGCAGTGGCGTAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp CAGGTGACTGTGAGCCACCCCTGTCTACCCCAGAGGAGCTCTGTCACCATGTCTGGAGGAAGGGGGCTGTaGAGGGAGATGGCGGTGTCT +
Preference number: 4 (lower is better)
Translates to: QVTVSHPCLPQRSSVTMSGGRGL*REMAVS
Trigger: AGACACCGCCATCTCCCTCCACAGCCCCCTTCCTCC...AGACATGGTGACAGAGCTCCTCTGGGGTAGACAGGGGTGGCTCACAGTCACCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000132831.2
CDS-3UTR CCA 90 bp ACCCTGTGCCTGCTTCCTCGGCTGAGAACAGGGTCAGGTGAAGGAATTCAGGGAGCTGCTGTGCCTGCGTaGAGGAAGGGGGCTGTGGAG +
Preference number: 4 (lower is better)
Translates to: TLCLLPRLRTGSGEGIQGAAVPA*RKGAVE
Trigger: CTCCACAGCCCCCTTCCTCCACGCAGGCACAGCAGC...TCCCTGAATTCCTTCACCTGACCCTGTTCTCAGCCGAGGAAGCAGGCACAGGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000132831.2
CDS-3UTR GCA 90 bp TTCCCTCTTAGGACATCCAGGCAGTGGGATTGCTTAGCATCATGGCCATTGCCATGGTCCCCACCCACGTaGTGCAGCAGGGAGCCCCCG +
Preference number: 4 (lower is better)
Translates to: FPLRTSRQWDCLASWPLPWSPPT*CSREPP
Trigger: CGGGGGCTCCCTGCTGCAGCACGTGGGTGGGGACCA...TGGCAATGGCCATGATGCTAAGCAATCCCACTGCCTGGATGTCCTAAGAGGGAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR GCA 90 bp TTCCCTCTTAGGACATCCAGGCAGTGGGATTGCTTAGCATCATGGCCATTGCCAGCCTCCGTGCACTGCTaGCCTGTGGCTCGGACCCCG +
Preference number: 4 (lower is better)
Translates to: FPLRTSRQWDCLASWPLPASVHC*PVARTP
Trigger: CGGGGTCCGAGCCACAGGGCAGCAGTGCACGGAGGC...TGGCAATGGCCATGATGCTAAGCAATCCCACTGCCTGGATGTCCTAAGAGGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR GCA 90 bp CTACAGAGGCTCCTTTCTCCCTCCCCCAACCCCCTTGGTGCTAATCTCAAACGTGGCAGAGCGGGCAGGTaGGTTCCCTGTCCAGCCACA +
Preference number: 4 (lower is better)
Translates to: LQRLLSPSPNPLGANLKRGRAGR*VPCPAT
Trigger: TGTGGCTGGACAGGGAACGCACCTGCCCGCTCTGCC...ACGTTTGAGATTAGCACCAAGGGGGTTGGGGGAGGGAGAAAGGAGCCTCTGTAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp TTCCCTGGAAGGATGGGAACTGAAGAGCATCTCACTGTCCCAGGGGATGCTCCACGGTGGGCACCATGGTaGAAGTGGTGGTGGGCCTGG +
Preference number: 4 (lower is better)
Translates to: FPGRMGTEEHLTVPGDAPRWAPW*KWWWAW
Trigger: CCAGGCCCACCACCACTTCCACCATGGTGCCCACCG...TGGAGCATCCCCTGGGACAGTGAGATGCTCTTCAGTTCCCATCCTTCCAGGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp ATACGCCACTGCAGGGGACACTTTCCCACAGCCTGCTGTCTGGGAAACTGCCTGCCTGCTCCCGGAGGGTaGAGTTGGCATAGGCAAAGG +
Preference number: 4 (lower is better)
Translates to: IRHCRGHFPTACCLGNCLPAPGG*SWHRQR
Trigger: CCTTTGCCTATGCCAACTCCACCCTCCGGGAGCAGG...CAGGCAGTTTCCCAGACAGCAGGCTGTGGGAAAGTGTCCCCTGCAGTGGCGTAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR CAA 72 bp TCCTCCTGCCTCTCCCACCCAGCGCTGCCAATTCAGTaGTGCACTGCCATGCCTAGTTCATGTGGTGCTGGC +
Preference number: 4 (lower is better)
Translates to: SSCLSHPALPIQ*CTAMPSSCGAG
Trigger: GCCAGCACCACATGAACTAGGCATGGCAGTGCACAACTGAATTGGCAGCGCTGGGTGGGAGAGGCAGGAGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR GCA 90 bp GGAGGCAGGAGAAAGTCCTGGAGGCTGTTTCCCAGGCATCCTTGGGGCTGGGCTAGGGGAGGCCGTCTCTaGCTTCAGACTCTCAAATAC +
Preference number: 4 (lower is better)
Translates to: GGRRKSWRLFPRHPWGWARGGRL*LQTLKY
Trigger: GTATTTGAGAGTCTGAAGGCAGAGACGGCCTCCCCT...AGCCCAGCCCCAAGGATGCCTGGGAAACAGCCTCCAGGACTTTCTCCTGCCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR GCA 90 bp ATACGCCACTGCAGGGGACACTTTCCCACAGCCTGCTGTCTGGGAAACTGCCTGTGCTGGCCATCCCGATaGACACAGCAATGCCCAGCT +
Preference number: 4 (lower is better)
Translates to: IRHCRGHFPTACCLGNCLCWPSR*TQQCPA
Trigger: AGCTGGGCATTGCTGTGTGCATCGGGATGGCCAGCA...CAGGCAGTTTCCCAGACAGCAGGCTGTGGGAAAGTGTCCCCTGCAGTGGCGTAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp TTCCCTCTTAGGACATCCAGGCAGTGGGATTGCTTAGCATCATGGCCATTGCCAAGGGAGCCCCCGCGGTaGGCACCATGGTGGAAGTGG +
Preference number: 4 (lower is better)
Translates to: FPLRTSRQWDCLASWPLPREPPR*APWWKW
Trigger: CCACTTCCACCATGGTGCCCACCGCGGGGGCTCCCT...TGGCAATGGCCATGATGCTAAGCAATCCCACTGCCTGGATGTCCTAAGAGGGAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp TTCCCTGGAAGGATGGGAACTGAAGAGCATCTCACTGTCCCAGGGGATGCTCCATCTGAGTGTCCACGGTaGTCCCCACCCACGTGCTGC +
Preference number: 4 (lower is better)
Translates to: FPGRMGTEEHLTVPGDAPSECPR*SPPTCC
Trigger: GCAGCACGTGGGTGGGGACCACCGTGGACACTCAGA...TGGAGCATCCCCTGGGACAGTGAGATGCTCTTCAGTTCCCATCCTTCCAGGGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR GCA 90 bp CGCTTCAGCAGTGGGGGATGGTCCCAAGGCTCCGTACCTGTGCCGTTCCCTTTGCTACTGTGGCGTCTCTaGATTTTCCTTAGCACCTGG +
Preference number: 4 (lower is better)
Translates to: RFSSGGWSQGSVPVPFPLLLWRL*IFLSTW
Trigger: CCAGGTGCTAAGGAAAATGCAGAGACGCCACAGTAG...CAAAGGGAACGGCACAGGTACGGAGCCTTGGGACCATCCCCCACTGCTGAAGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR GCA 90 bp GGAGGCAGGAGAAAGTCCTGGAGGCTGTTTCCCAGGCATCCTTGGGGCTGGGCTGAATGTTGTCCGTGTTaGTACTGTGGCGTCTCTGCA +
Preference number: 4 (lower is better)
Translates to: GGRRKSWRLFPRHPWGWAECCPC*YCGVSA
Trigger: TGCAGAGACGCCACAGTAGCAACACGGACAACATTC...AGCCCAGCCCCAAGGATGCCTGGGAAACAGCCTCCAGGACTTTCTCCTGCCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR GCA 90 bp TTCCCTGGAAGGATGGGAACTGAAGAGCATCTCACTGTCCCAGGGGATGCTCCACTTGAGCTCAGACAGTaGGGGTGCTGGAGTTCCGGG +
Preference number: 4 (lower is better)
Translates to: FPGRMGTEEHLTVPGDAPLELRQ*GCWSSG
Trigger: CCCGGAACTCCAGCACCCGCACTGTCTGAGCTCAAG...TGGAGCATCCCCTGGGACAGTGAGATGCTCTTCAGTTCCCATCCTTCCAGGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR GCA 90 bp CAGGGGACACTTTCCCACAGCCTGCTGTCTGGGAAACTGCCTGAGCCCTCTAAATCCTTCAAGGACACCTaGTCCCGGAGGGTGGAGTTG +
Preference number: 4 (lower is better)
Translates to: QGTLSHSLLSGKLPEPSKSFKDT*SRRVEL
Trigger: CAACTCCACCCTCCGGGAGCAGGTGTCCTTGAAGGA...TTTAGAGGGCTCAGGCAGTTTCCCAGACAGCAGGCTGTGGGAAAGTGTCCCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR GCA 90 bp CGCTTCAGCAGTGGGGGATGGTCCCAAGGCTCCGTACCTGTGCCGTTCCCTTTGGTACATGGTATTCCCTaGCAGGAAGGCCAGAATCCA +
Preference number: 4 (lower is better)
Translates to: RFSSGGWSQGSVPVPFPLVHGIP*QEGQNP
Trigger: TGGATTCTGGCCTTCCTGGCAGGGAATACCATGTAC...CAAAGGGAACGGCACAGGTACGGAGCCTTGGGACCATCCCCCACTGCTGAAGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp AGAAGGGCCCATCCTCCCTTCCCTCTTAGGACATCCAGGCAGTGGGATTGCTTATCGGGGCTGAGCGCCTaGCTGCGACTTCTGCTTTCA +
Preference number: 4 (lower is better)
Translates to: RRAHPPFPLRTSRQWDCLSGLSA*LRLLLS
Trigger: TGAAAGCAGAAGTCGCAGCCAGGCGCTCAGCCCCGA...TAAGCAATCCCACTGCCTGGATGTCCTAAGAGGGAAGGGAGGATGGGCCCTTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117177.8
CDS-3UTR CCA 90 bp TTCCCTCTTAGGACATCCAGGCAGTGGGATTGCTTAGCATCATGGCCATTGCCAGCACCATGGTGGAAGTaGTGGTGGGCCTGGCGGTGG +
Preference number: 4 (lower is better)
Translates to: FPLRTSRQWDCLASWPLPAPWWK*WWAWRW
Trigger: CCACCGCCAGGCCCACCACCACTTCCACCATGGTGC...TGGCAATGGCCATGATGCTAAGCAATCCCACTGCCTGGATGTCCTAAGAGGGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp CTACAGAGGCTCCTTTCTCCCTCCCCCAACCCCCTTGGTGCTAATCTCAAACGTCCCGGAGGGTGGAGTTaGCATAGGCAAAGGTGCTGG +
Preference number: 4 (lower is better)
Translates to: LQRLLSPSPNPLGANLKRPGGWS*HRQRCW
Trigger: CCAGCACCTTTGCCTATGCCAACTCCACCCTCCGGG...ACGTTTGAGATTAGCACCAAGGGGGTTGGGGGAGGGAGAAAGGAGCCTCTGTAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp CAAACCAGAGAGGACAGAAGGGCCCATCCTCCCTTCCCTCTTAGGACATCCAGGTGCACTGCTGCCCTGTaGCTCGGACCCCGTAATTCT +
Preference number: 4 (lower is better)
Translates to: QTREDRRAHPPFPLRTSRCTAAL*LGPRNS
Trigger: AGAATTACGGGGTCCGAGCCACAGGGCAGCAGTGCA...CCTGGATGTCCTAAGAGGGAAGGGAGGATGGGCCCTTCTGTCCTCTCTGGTTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR TCA 90 bp ATACGCCACTGCAGGGGACACTTTCCCACAGCCTGCTGTCTGGGAAACTGCCTGTGGGCTTCAGGAATATaGGGCTGCTGTAGAGCTGCT +
Preference number: 4 (lower is better)
Translates to: IRHCRGHFPTACCLGNCLWASGI*GCCRAA
Trigger: AGCAGCTCTACAGCAGCCTCATATTCCTGAAGCCCA...CAGGCAGTTTCCCAGACAGCAGGCTGTGGGAAAGTGTCCCCTGCAGTGGCGTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR GCA 90 bp AGGCAGGCAGAATTCCAGAGGCTTCTGTGCGGTCACCTGTGCTATTTCGTCCCATCCTTCAAGGACACCTaGTCCCGGAGGGTGGAGTTG +
Preference number: 4 (lower is better)
Translates to: RQAEFQRLLCGHLCYFVPSFKDT*SRRVEL
Trigger: CAACTCCACCCTCCGGGAGCAGGTGTCCTTGAAGGA...TGGGACGAAATAGCACAGGTGACCGCACAGAAGCCTCTGGAATTCTGCCTGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp CAGGGGACACTTTCCCACAGCCTGCTGTCTGGGAAACTGCCTGAGCCCTCTAAACTCATCCCTGGTGGCTaGCATGGGGATGAAGACATC +
Preference number: 4 (lower is better)
Translates to: QGTLSHSLLSGKLPEPSKLIPGG*HGDEDI
Trigger: GATGTCTTCATCCCCATGCCAGCCACCAGGGATGAG...TTTAGAGGGCTCAGGCAGTTTCCCAGACAGCAGGCTGTGGGAAAGTGTCCCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp TTCTGTGCGGTCACCTGTGCTATTTCGTCCCAGGTTTCCAATCAGAGAGTTTCCGCACCATGGTGGAAGTaGTGGTGGGCCTGGCGGTGG +
Preference number: 4 (lower is better)
Translates to: FCAVTCAISSQVSNQRVSAPWWK*WWAWRW
Trigger: CCACCGCCAGGCCCACCACCACTTCCACCATGGTGC...GGAAACTCTCTGATTGGAAACCTGGGACGAAATAGCACAGGTGACCGCACAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp CACACTGTTAGTTCACCTGTTCTCCCTTTTAAGATGGAGTCTCACAGAGCCCAGCCGCGGTGGGCACCATaGTGGAAGTGGTGGTGGGCC +
Preference number: 4 (lower is better)
Translates to: HTVSSPVLPFKMESHRAQPRWAP*WKWWWA
Trigger: GGCCCACCACCACTTCCACCATGGTGCCCACCGCGG...CTGGGCTCTGTGAGACTCCATCTTAAAAGGGAGAACAGGTGAACTAACAGTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp GGAGGCAGGAGAAAGTCCTGGAGGCTGTTTCCCAGGCATCCTTGGGGCTGGGCTGCGACTTCTTTCAGGTaGAATGTTGTCCGTGTTGCT +
Preference number: 4 (lower is better)
Translates to: GGRRKSWRLFPRHPWGWAATSFR*NVVRVA
Trigger: AGCAACACGGACAACATTCCACCTGAAAGAAGTCGC...AGCCCAGCCCCAAGGATGCCTGGGAAACAGCCTCCAGGACTTTCTCCTGCCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121369.8
3UTR CAA 72 bp ATCACAAAGGTGCAGTCTGTCCATGGCTCCTGCCATTaGACCTCGCTGCCTGCCTGCTCAGAGCAGTCTGTC +
Preference number: 4 (lower is better)
Translates to: ITKVQSVHGSCH*TSLPACSEQSV
Trigger: GACAGACTGCTCTGAGCAGGCAGGCAGCGAGGTCAAATGGCAGGAGCCATGGACAGACTGCACCTTTGTGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR TCA 90 bp AGGCAGGCAGAATTCCAGAGGCTTCTGTGCGGTCACCTGTGCTATTTCGTCCCAAAGGGCAGTCCTTTCTaGAGCCAGGAGATCACAGCC +
Preference number: 4 (lower is better)
Translates to: RQAEFQRLLCGHLCYFVPKGSPF*SQEITA
Trigger: GGCTGTGATCTCCTGGCTTCAGAAAGGACTGCCCTT...TGGGACGAAATAGCACAGGTGACCGCACAGAAGCCTCTGGAATTCTGCCTGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR TCA 90 bp CAGGGGACACTTTCCCACAGCCTGCTGTCTGGGAAACTGCCTGAGCCCTCTAAAAGGAGTCGTCCCCCATaGTGTACTTGTACCACAGCT +
Preference number: 4 (lower is better)
Translates to: QGTLSHSLLSGKLPEPSKRSRPP*CTCTTA
Trigger: AGCTGTGGTACAAGTACATCATGGGGGACGACTCCT...TTTAGAGGGCTCAGGCAGTTTCCCAGACAGCAGGCTGTGGGAAAGTGTCCCCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR GCA 90 bp AGAAGGGCCCATCCTCCCTTCCCTCTTAGGACATCCAGGCAGTGGGATTGCTTACGATGCACACAGCAATaGCCAGCTTGTGCTGGAAGC +
Preference number: 4 (lower is better)
Translates to: RRAHPPFPLRTSRQWDCLRCTQQ*PACAGS
Trigger: GCTTCCAGCACAAGCTGGGCATTGCTGTGTGCATCG...TAAGCAATCCCACTGCCTGGATGTCCTAAGAGGGAAGGGAGGATGGGCCCTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR GCA 90 bp TTCCCTGGAAGGATGGGAACTGAAGAGCATCTCACTGTCCCAGGGGATGCTCCACGATGCACACAGCAATaGCCAGCTTGTGCTGGAAGC +
Preference number: 4 (lower is better)
Translates to: FPGRMGTEEHLTVPGDAPRCTQQ*PACAGS
Trigger: GCTTCCAGCACAAGCTGGGCATTGCTGTGTGCATCG...TGGAGCATCCCCTGGGACAGTGAGATGCTCTTCAGTTCCCATCCTTCCAGGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR GCA 90 bp TTCCCTGGAAGGATGGGAACTGAAGAGCATCTCACTGTCCCAGGGGATGCTCCATGGCATAGGCAAAGGTaGTGGCCATCCCGATGCACA +
Preference number: 4 (lower is better)
Translates to: FPGRMGTEEHLTVPGDAPWHRQR*WPSRCT
Trigger: TGTGCATCGGGATGGCCAGCACCTTTGCCTATGCCA...TGGAGCATCCCCTGGGACAGTGAGATGCTCTTCAGTTCCCATCCTTCCAGGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp CGCTTCAGCAGTGGGGGATGGTCCCAAGGCTCCGTACCTGTGCCGTTCCCTTTGACTTCTGCTTTCAGGTaGAATGTTGTCCGTGTTGCT +
Preference number: 4 (lower is better)
Translates to: RFSSGGWSQGSVPVPFPLTSAFR*NVVRVA
Trigger: AGCAACACGGACAACATTCCACCTGAAAGCAGAAGT...CAAAGGGAACGGCACAGGTACGGAGCCTTGGGACCATCCCCCACTGCTGAAGCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117177.8
CDS-3UTR CCA 90 bp TTAATCTCAGGTCCTCACACACACAAGACTTGGAGGACTCAGAGGGATTTGAGTCTGCTGGGAAGGGGCTaGCAGGCAGGCCACCTGCCA +
Preference number: 4 (lower is better)
Translates to: LISGPHTHKTWRTQRDLSLLGRG*QAGHLP
Trigger: TGGCAGGTGGCCTGCCTGCCAGCCCCTTCCCAGCAG...ACTCAAATCCCTCTGAGTCCTCCAAGTCTTGTGTGTGTGAGGACCTGAGATTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp AGGCAGGCAGAATTCCAGAGGCTTCTGTGCGGTCACCTGTGCTATTTCGTCCCACTCATCCCTGGTGGCTaGCATGGGGATGAAGACATC +
Preference number: 4 (lower is better)
Translates to: RQAEFQRLLCGHLCYFVPLIPGG*HGDEDI
Trigger: GATGTCTTCATCCCCATGCCAGCCACCAGGGATGAG...TGGGACGAAATAGCACAGGTGACCGCACAGAAGCCTCTGGAATTCTGCCTGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp AGGCAGGCAGAATTCCAGAGGCTTCTGTGCGGTCACCTGTGCTATTTCGTCCCAATGCCCAGCTTGTGCTaGAAGCACAGTTTGGCCAGC +
Preference number: 4 (lower is better)
Translates to: RQAEFQRLLCGHLCYFVPMPSLC*KHSLAS
Trigger: GCTGGCCAAACTGTGCTTCCAGCACAAGCTGGGCAT...TGGGACGAAATAGCACAGGTGACCGCACAGAAGCCTCTGGAATTCTGCCTGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR TCA 90 bp CAGGGGACACTTTCCCACAGCCTGCTGTCTGGGAAACTGCCTGAGCCCTCTAAAAGAGCTGCTGGGAGCTaGAGGTATAAAGGACGTACA +
Preference number: 4 (lower is better)
Translates to: QGTLSHSLLSGKLPEPSKRAAGS*RYKGRT
Trigger: TGTACGTCCTTTATACCTTCAGCTCCCAGCAGCTCT...TTTAGAGGGCTCAGGCAGTTTCCCAGACAGCAGGCTGTGGGAAAGTGTCCCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR TCA 90 bp AGGCAGGCAGAATTCCAGAGGCTTCTGTGCGGTCACCTGTGCTATTTCGTCCCATGGGCTTCAGGAATATaGGGCTGCTGTAGAGCTGCT +
Preference number: 4 (lower is better)
Translates to: RQAEFQRLLCGHLCYFVPWASGI*GCCRAA
Trigger: AGCAGCTCTACAGCAGCCTCATATTCCTGAAGCCCA...TGGGACGAAATAGCACAGGTGACCGCACAGAAGCCTCTGGAATTCTGCCTGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp ATACGCCACTGCAGGGGACACTTTCCCACAGCCTGCTGTCTGGGAAACTGCCTGTCCGTGTTGCTACTGTaGCGTCTCTGCATTTTCCTT +
Preference number: 4 (lower is better)
Translates to: IRHCRGHFPTACCLGNCLSVLLL*RLCIFL
Trigger: AAGGAAAATGCAGAGACGCCACAGTAGCAACACGGA...CAGGCAGTTTCCCAGACAGCAGGCTGTGGGAAAGTGTCCCCTGCAGTGGCGTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp TTCCCTGGAAGGATGGGAACTGAAGAGCATCTCACTGTCCCAGGGGATGCTCCAAGAGACCTGAACAGCTaGCTCAGCTCCTCAATGACC +
Preference number: 4 (lower is better)
Translates to: FPGRMGTEEHLTVPGDAPRDLNS*LSSSMT
Trigger: GGTCATTGAGGAGCTGAGCCAGCTGTTCAGGTCTCT...TGGAGCATCCCCTGGGACAGTGAGATGCTCTTCAGTTCCCATCCTTCCAGGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp TTCCCTCTTAGGACATCCAGGCAGTGGGATTGCTTAGCATCATGGCCATTGCCATGCACTGCTGCCCTGTaGCTCGGACCCCGTAATTCT +
Preference number: 4 (lower is better)
Translates to: FPLRTSRQWDCLASWPLPCTAAL*LGPRNS
Trigger: AGAATTACGGGGTCCGAGCCACAGGGCAGCAGTGCA...TGGCAATGGCCATGATGCTAAGCAATCCCACTGCCTGGATGTCCTAAGAGGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp TTCTGTGCGGTCACCTGTGCTATTTCGTCCCAGGTTTCCAATCAGAGAGTTTCCTCTCGGAACTCAGCTTaGCAGATGGCGCAGACGGCG +
Preference number: 4 (lower is better)
Translates to: FCAVTCAISSQVSNQRVSSRNSA*QMAQTA
Trigger: CGCCGTCTGCGCCATCTGCCAAGCTGAGTTCCGAGA...GGAAACTCTCTGATTGGAAACCTGGGACGAAATAGCACAGGTGACCGCACAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp CAAACCAGAGAGGACAGAAGGGCCCATCCTCCCTTCCCTCTTAGGACATCCAGGGGCACAGGAGAATCATaGGATCTCGGAACTCAGCTT +
Preference number: 4 (lower is better)
Translates to: QTREDRRAHPPFPLRTSRGTGES*DLGTQL
Trigger: AAGCTGAGTTCCGAGATCCCATGATTCTCCTGTGCC...CCTGGATGTCCTAAGAGGGAAGGGAGGATGGGCCCTTCTGTCCTCTCTGGTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp AGCCCTGGCCTGCCTCTGCAGAGGGAGGAGGCTTATGAAGGATGGGATGAAAACGGCACAGGAGAATCATaGGATCTCGGAACTCAGCTT +
Preference number: 4 (lower is better)
Translates to: SPGLPLQREEAYEGWDENGTGES*DLGTQL
Trigger: AAGCTGAGTTCCGAGATCCCATGATTCTCCTGTGCC...GTTTTCATCCCATCCTTCATAAGCCTCCTCCCTCTGCAGAGGCAGGCCAGGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132831.2
CDS-3UTR TCA 90 bp AGGCAGGCAGAATTCCAGAGGCTTCTGTGCGGTCACCTGTGCTATTTCGTCCCACCAGAATCCACAAGATaGCCAGAACCGACCTCTTCT +
Preference number: 4 (lower is better)
Translates to: RQAEFQRLLCGHLCYFVPPESTR*PEPTSS
Trigger: AGAAGAGGTCGGTTCTGGTCATCTTGTGGATTCTGG...TGGGACGAAATAGCACAGGTGACCGCACAGAAGCCTCTGGAATTCTGCCTGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR TCA 90 bp CTACAGAGGCTCCTTTCTCCCTCCCCCAACCCCCTTGGTGCTAATCTCAAACGTCCAGAATCCACAAGATaGCCAGAACCGACCTCTTCT +
Preference number: 4 (lower is better)
Translates to: LQRLLSPSPNPLGANLKRPESTR*PEPTSS
Trigger: AGAAGAGGTCGGTTCTGGTCATCTTGTGGATTCTGG...ACGTTTGAGATTAGCACCAAGGGGGTTGGGGGAGGGAGAAAGGAGCCTCTGTAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR GCA 90 bp AGAAGGGCCCATCCTCCCTTCCCTCTTAGGACATCCAGGCAGTGGGATTGCTTACTACTGTGGCGTCTCTaGATTTTCCTTAGCACCTGG +
Preference number: 4 (lower is better)
Translates to: RRAHPPFPLRTSRQWDCLLLWRL*IFLSTW
Trigger: CCAGGTGCTAAGGAAAATGCAGAGACGCCACAGTAG...TAAGCAATCCCACTGCCTGGATGTCCTAAGAGGGAAGGGAGGATGGGCCCTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR GCA 90 bp AGAAGGGCCCATCCTCCCTTCCCTCTTAGGACATCCAGGCAGTGGGATTGCTTAGAATGTTGTCCGTGTTaGTACTGTGGCGTCTCTGCA +
Preference number: 4 (lower is better)
Translates to: RRAHPPFPLRTSRQWDCLECCPC*YCGVSA
Trigger: TGCAGAGACGCCACAGTAGCAACACGGACAACATTC...TAAGCAATCCCACTGCCTGGATGTCCTAAGAGGGAAGGGAGGATGGGCCCTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR GCA 90 bp TTCCCTCTTAGGACATCCAGGCAGTGGGATTGCTTAGCATCATGGCCATTGCCAGCAATGCCCAGCTTGTaGTGGAAGCACAGTTTGGCC +
Preference number: 4 (lower is better)
Translates to: FPLRTSRQWDCLASWPLPAMPSL*WKHSLA
Trigger: GGCCAAACTGTGCTTCCAGCACAAGCTGGGCATTGC...TGGCAATGGCCATGATGCTAAGCAATCCCACTGCCTGGATGTCCTAAGAGGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR GCA 90 bp CTACAGAGGCTCCTTTCTCCCTCCCCCAACCCCCTTGGTGCTAATCTCAAACGTGTACATGGTATTCCCTaGCAGGAAGGCCAGAATCCA +
Preference number: 4 (lower is better)
Translates to: LQRLLSPSPNPLGANLKRVHGIP*QEGQNP
Trigger: TGGATTCTGGCCTTCCTGGCAGGGAATACCATGTAC...ACGTTTGAGATTAGCACCAAGGGGGTTGGGGGAGGGAGAAAGGAGCCTCTGTAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR GCA 90 bp AGCCTGCTGTCTGGGAAACTGCCTGAGCCCTCTAAACTGGATGAACCCCACTGGTCTTCACAGAACACGTaGTGGCACAGGAGAATCATG +
Preference number: 4 (lower is better)
Translates to: SLLSGKLPEPSKLDEPHWSSQNT*WHRRIM
Trigger: CATGATTCTCCTGTGCCAGCACGTGTTCTGTGAAGA...CCAGTGGGGTTCATCCAGTTTAGAGGGCTCAGGCAGTTTCCCAGACAGCAGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR GCA 90 bp CAAACCAGAGAGGACAGAAGGGCCCATCCTCCCTTCCCTCTTAGGACATCCAGGTCTTCACAGAACACGTaGTGGCACAGGAGAATCATG +
Preference number: 4 (lower is better)
Translates to: QTREDRRAHPPFPLRTSRSSQNT*WHRRIM
Trigger: CATGATTCTCCTGTGCCAGCACGTGTTCTGTGAAGA...CCTGGATGTCCTAAGAGGGAAGGGAGGATGGGCCCTTCTGTCCTCTCTGGTTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp CACACTGTTAGTTCACCTGTTCTCCCTTTTAAGATGGAGTCTCACAGAGCCCAGCCCGGAGGGTGGAGTTaGCATAGGCAAAGGTGCTGG +
Preference number: 4 (lower is better)
Translates to: HTVSSPVLPFKMESHRAQPGGWS*HRQRCW
Trigger: CCAGCACCTTTGCCTATGCCAACTCCACCCTCCGGG...CTGGGCTCTGTGAGACTCCATCTTAAAAGGGAGAACAGGTGAACTAACAGTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp CACACTGTTAGTTCACCTGTTCTCCCTTTTAAGATGGAGTCTCACAGAGCCCAGTCTCGGAACTCAGCTTaGCAGATGGCGCAGACGGCG +
Preference number: 4 (lower is better)
Translates to: HTVSSPVLPFKMESHRAQSRNSA*QMAQTA
Trigger: CGCCGTCTGCGCCATCTGCCAAGCTGAGTTCCGAGA...CTGGGCTCTGTGAGACTCCATCTTAAAAGGGAGAACAGGTGAACTAACAGTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp TTCCCTGGAAGGATGGGAACTGAAGAGCATCTCACTGTCCCAGGGGATGCTCCAGGCACAGGAGAATCATaGGATCTCGGAACTCAGCTT +
Preference number: 4 (lower is better)
Translates to: FPGRMGTEEHLTVPGDAPGTGES*DLGTQL
Trigger: AAGCTGAGTTCCGAGATCCCATGATTCTCCTGTGCC...TGGAGCATCCCCTGGGACAGTGAGATGCTCTTCAGTTCCCATCCTTCCAGGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp CACACTGTTAGTTCACCTGTTCTCCCTTTTAAGATGGAGTCTCACAGAGCCCAGTCGGGGCTGAGCGCCTaGCTGCGACTTCTTTCAGGT +
Preference number: 4 (lower is better)
Translates to: HTVSSPVLPFKMESHRAQSGLSA*LRLLSG
Trigger: ACCTGAAAGAAGTCGCAGCCAGGCGCTCAGCCCCGA...CTGGGCTCTGTGAGACTCCATCTTAAAAGGGAGAACAGGTGAACTAACAGTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121369.8
3UTR CAA 72 bp CATCTCAGGCAAAGCAATCTCTCTGATAAAAACCAGTaGCAGGCAGTCCCACCACTCTCCTGGGTACCCCCT +
Preference number: 4 (lower is better)
Translates to: HLRQSNLSDKNQ*QAVPPLSWVPP
Trigger: AGGGGGTACCCAGGAGAGTGGTGGGACTGCCTGCAACTGGTTTTTATCAGAGAGATTGCTTTGCCTGAGATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR TCA 90 bp TTCCCTCTTAGGACATCCAGGCAGTGGGATTGCTTAGCATCATGGCCATTGCCAAGGAGTCGTCCCCCATaGTGTACTTGTACCACAGCT +
Preference number: 4 (lower is better)
Translates to: FPLRTSRQWDCLASWPLPRSRPP*CTCTTA
Trigger: AGCTGTGGTACAAGTACATCATGGGGGACGACTCCT...TGGCAATGGCCATGATGCTAAGCAATCCCACTGCCTGGATGTCCTAAGAGGGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR GCA 90 bp TTCTGTGCGGTCACCTGTGCTATTTCGTCCCAGGTTTCCAATCAGAGAGTTTCCTGGCATAGGCAAAGGTaGTGGCCATCCCGATGCACA +
Preference number: 4 (lower is better)
Translates to: FCAVTCAISSQVSNQRVSWHRQR*WPSRCT
Trigger: TGTGCATCGGGATGGCCAGCACCTTTGCCTATGCCA...GGAAACTCTCTGATTGGAAACCTGGGACGAAATAGCACAGGTGACCGCACAGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR GCA 90 bp AGGCAGGCAGAATTCCAGAGGCTTCTGTGCGGTCACCTGTGCTATTTCGTCCCAAGATGTCGAACGACTTaGAGAGACTGTAGAGGACGA +
Preference number: 4 (lower is better)
Translates to: RQAEFQRLLCGHLCYFVPRCRTT*RDCRGR
Trigger: TCGTCCTCTACAGTCTCTGCAAGTCGTTCGACATCT...TGGGACGAAATAGCACAGGTGACCGCACAGAAGCCTCTGGAATTCTGCCTGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR GCA 90 bp TTCCCTGGAAGGATGGGAACTGAAGAGCATCTCACTGTCCCAGGGGATGCTCCAAGATGTCGAACGACTTaGAGAGACTGTAGAGGACGA +
Preference number: 4 (lower is better)
Translates to: FPGRMGTEEHLTVPGDAPRCRTT*RDCRGR
Trigger: TCGTCCTCTACAGTCTCTGCAAGTCGTTCGACATCT...TGGAGCATCCCCTGGGACAGTGAGATGCTCTTCAGTTCCCATCCTTCCAGGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp TTCTGTGCGGTCACCTGTGCTATTTCGTCCCAGGTTTCCAATCAGAGAGTTTCCCATAGGCAAAGGTGCTaGCCATCCCGATGCACACAG +
Preference number: 4 (lower is better)
Translates to: FCAVTCAISSQVSNQRVSHRQRC*PSRCTQ
Trigger: CTGTGTGCATCGGGATGGCCAGCACCTTTGCCTATG...GGAAACTCTCTGATTGGAAACCTGGGACGAAATAGCACAGGTGACCGCACAGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp TTAATCTCAGGTCCTCACACACACAAGACTTGGAGGACTCAGAGGGATTTGAGTCCTGCTCCCGGAGGGTaGAGTTGGCATAGGCAAAGG +
Preference number: 4 (lower is better)
Translates to: LISGPHTHKTWRTQRDLSPAPGG*SWHRQR
Trigger: CCTTTGCCTATGCCAACTCCACCCTCCGGGAGCAGG...ACTCAAATCCCTCTGAGTCCTCCAAGTCTTGTGTGTGTGAGGACCTGAGATTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR TCA 90 bp TTAATCTCAGGTCCTCACACACACAAGACTTGGAGGACTCAGAGGGATTTGAGTAGGAGATCACAGCCTTaGGCTCAGACAGTGCGGGTG +
Preference number: 4 (lower is better)
Translates to: LISGPHTHKTWRTQRDLSRRSQP*AQTVRV
Trigger: CACCCGCACTGTCTGAGCTCAAGGCTGTGATCTCCT...ACTCAAATCCCTCTGAGTCCTCCAAGTCTTGTGTGTGTGAGGACCTGAGATTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp CACACTGTTAGTTCACCTGTTCTCCCTTTTAAGATGGAGTCTCACAGAGCCCAGCATAGGCAAAGGTGCTaGCCATCCCGATGCACACAG +
Preference number: 4 (lower is better)
Translates to: HTVSSPVLPFKMESHRAQHRQRC*PSRCTQ
Trigger: CTGTGTGCATCGGGATGGCCAGCACCTTTGCCTATG...CTGGGCTCTGTGAGACTCCATCTTAAAAGGGAGAACAGGTGAACTAACAGTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR TCA 90 bp TTAATCTCAGGTCCTCACACACACAAGACTTGGAGGACTCAGAGGGATTTGAGTAAGGGCAGTCCTTTCTaGAGCCAGGAGATCACAGCC +
Preference number: 4 (lower is better)
Translates to: LISGPHTHKTWRTQRDLSKGSPF*SQEITA
Trigger: GGCTGTGATCTCCTGGCTTCAGAAAGGACTGCCCTT...ACTCAAATCCCTCTGAGTCCTCCAAGTCTTGTGTGTGTGAGGACCTGAGATTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp TTAATCTCAGGTCCTCACACACACAAGACTTGGAGGACTCAGAGGGATTTGAGTATGCCCAGCTTGTGCTaGAAGCACAGTTTGGCCAGC +
Preference number: 4 (lower is better)
Translates to: LISGPHTHKTWRTQRDLSMPSLC*KHSLAS
Trigger: GCTGGCCAAACTGTGCTTCCAGCACAAGCTGGGCAT...ACTCAAATCCCTCTGAGTCCTCCAAGTCTTGTGTGTGTGAGGACCTGAGATTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp CACACTGTTAGTTCACCTGTTCTCCCTTTTAAGATGGAGTCTCACAGAGCCCAGAGAGACCTGAACAGCTaGCTCAGCTCCTCAATGACC +
Preference number: 4 (lower is better)
Translates to: HTVSSPVLPFKMESHRAQRDLNS*LSSSMT
Trigger: GGTCATTGAGGAGCTGAGCCAGCTGTTCAGGTCTCT...CTGGGCTCTGTGAGACTCCATCTTAAAAGGGAGAACAGGTGAACTAACAGTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR TCA 90 bp CACACTGTTAGTTCACCTGTTCTCCCTTTTAAGATGGAGTCTCACAGAGCCCAGAGAGCTGCTGGGAGCTaGAGGTATAAAGGACGTACA +
Preference number: 4 (lower is better)
Translates to: HTVSSPVLPFKMESHRAQRAAGS*RYKGRT
Trigger: TGTACGTCCTTTATACCTTCAGCTCCCAGCAGCTCT...CTGGGCTCTGTGAGACTCCATCTTAAAAGGGAGAACAGGTGAACTAACAGTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR CAA 72 bp TACCTTGTTAATCTCAGGTCCTCACACACACAAGACTaGGAGGACTCAGAGGGATTTGAGTCTGTGACCCAC +
Preference number: 4 (lower is better)
Translates to: YLVNLRSSHTQD*EDSEGFESVTH
Trigger: GTGGGTCACAGACTCAAATCCCTCTGAGTCCTCCAAGTCTTGTGTGTGTGAGGACCTGAGATTAACAAGGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CCA 90 bp CACACTGTTAGTTCACCTGTTCTCCCTTTTAAGATGGAGTCTCACAGAGCCCAGTCCGTGTTGCTACTGTaGCGTCTCTGCATTTTCCTT +
Preference number: 4 (lower is better)
Translates to: HTVSSPVLPFKMESHRAQSVLLL*RLCIFL
Trigger: AAGGAAAATGCAGAGACGCCACAGTAGCAACACGGA...CTGGGCTCTGTGAGACTCCATCTTAAAAGGGAGAACAGGTGAACTAACAGTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
3UTR CAA 72 bp TATAAAGCAGTCTTTTCAGAGACTCTGGAAGGACTGTaGTTTCTCCGAGCTAATTACCTCACTAGAGAGGGG +
Preference number: 4 (lower is better)
Translates to: YKAVFSETLEGL*FLRANYLTREG
Trigger: CCCCTCTCTAGTGAGGTAATTAGCTCGGAGAAACAACAGTCCTTCCAGAGTCTCTGAAAAGACTGCTTTATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS CCA 90 bp GGTGCTTCCTTCGGCGCTGCGGCCACCGGCCTCATCCCTGGTGGCTaGCATGGGGATGAAGACATCCCCGCCACCCGCCGTGGAGCCCAG +
Preference number: 5 (lower is better)
Translates to: GASFGAAATGLIPGG*HGDEDIPATRRGAQ
Trigger: CTGGGCTCCACGGCGGGTGGCGGGGATGTCTTCATCCCCATGCCAGCCACCAGGGATGAGGCCGGTGGCCGCAGCGCCGAAGGAAGCACC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
ENSMUST00000154786.8
CDS TCA 90 bp CAGTGCGGGTGCTGGAGTTCCGGGCTGCTCGTCGACCCCTTCCTCTaGGTGTCCACGGTGGTCCCCACCCACGTGCTGCAGCAGGGAGCC +
Preference number: 5 (lower is better)
Translates to: QCGCWSSGLLVDPFL*VSTVVPTHVLQQGA
Trigger: GGCTCCCTGCTGCAGCACGTGGGTGGGGACCACCGTGGACACTCAGAGGAAGGGGTCGACGAGCAGCCCGGAACTCCAGCACCCGCACTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
ENSMUST00000154786.8
CDS GCA 90 bp CTCGGAACTCAGCTTGGCAGATGGCGCAGACGGCGCCAGCCTCCGTaGACTGCTGCCCTGTGGCTCGGACCCCGTAATTCTGTGAGGTGC +
Preference number: 5 (lower is better)
Translates to: LGTQLGRWRRRRQPP*TAALWLGPRNSVRC
Trigger: GCACCTCACAGAATTACGGGGTCCGAGCCACAGGGCAGCAGTGCACGGAGGCTGGCGCCGTCTGCGCCATCTGCCAAGCTGAGTTCCGAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS GCA 90 bp ATCACAGCCTTGAGCTCAGACAGTGCGGGTGCTGGAGTTCCGGGCTaGTCGTCGACCCCTTCCTCTGAGTGTCCACGGTGGTCCCCACCC +
Preference number: 5 (lower is better)
Translates to: ITALSSDSAGAGVPG*SSTPSSECPRWSPP
Trigger: GGGTGGGGACCACCGTGGACACTCAGAGGAAGGGGTCGACGAGCAGCCCGGAACTCCAGCACCCGCACTGTCTGAGCTCAAGGCTGTGAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
ENSMUST00000154786.8
CDS GCA 90 bp CGCAATCTCAGAGGAAAGCAGCACAGGGCTACTGGACCACCACGCTaGTGTGCCTGCGTGGAGGAAGGGGGCTGTGGAGGGAGATGGCGG +
Preference number: 5 (lower is better)
Translates to: RNLRGKQHRATGPPR*CACVEEGGCGGRWR
Trigger: CCGCCATCTCCCTCCACAGCCCCCTTCCTCCACGCAGGCACAGCAGCGTGGTGGTCCAGTAGCCCTGTGCTGCTTTCCTCTGAGATTGCG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000132831.2
CDS CCA 90 bp GCTGGCACAGGAGAATCATGGGATCTCGGAACTCAGCTTGGCAGATaGCGCAGACGGCGCCAGCCTCCGTGCACTGCTGCCCTGTGGCTC +
Preference number: 5 (lower is better)
Translates to: AGTGESWDLGTQLGR*RRRRQPPCTAALWL
Trigger: GAGCCACAGGGCAGCAGTGCACGGAGGCTGGCGCCGTCTGCGCCATCTGCCAAGCTGAGTTCCGAGATCCCATGATTCTCCTGTGCCAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS GCA 90 bp AGAGGAAAGCAGCACAGGGCTACTGGACCACCACGCTGCTGTGCCTaGGTGGAGGAAGGGGGCTGTGGAGGGAGATGGCGGTGTCTCTTG +
Preference number: 5 (lower is better)
Translates to: RGKQHRATGPPRCCA*VEEGGCGGRWRCLL
Trigger: CAAGAGACACCGCCATCTCCCTCCACAGCCCCCTTCCTCCACGCAGGCACAGCAGCGTGGTGGTCCAGTAGCCCTGTGCTGCTTTCCTCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000132831.2
CDS GCA 90 bp TCTCAGAGGAAAGCAGCACAGGGCTACTGGACCACCACGCTGCTGTaGCTGCGTGGAGGAAGGGGGCTGTGGAGGGAGATGGCGGTGTCT +
Preference number: 5 (lower is better)
Translates to: SQRKAAQGYWTTTLL*LRGGRGLWREMAVS
Trigger: AGACACCGCCATCTCCCTCCACAGCCCCCTTCCTCCACGCAGGCACAGCAGCGTGGTGGTCCAGTAGCCCTGTGCTGCTTTCCTCTGAGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000132831.2
CDS CCA 90 bp GGCAGATGGCGCAGACGGCGCCAGCCTCCGTGCACTGCTGCCCTGTaGCTCGGACCCCGTAATTCTGTGAGGTGCAAAGGAGCTTCAATG +
Preference number: 5 (lower is better)
Translates to: GRWRRRRQPPCTAAL*LGPRNSVRCKGASM
Trigger: CATTGAAGCTCCTTTGCACCTCACAGAATTACGGGGTCCGAGCCACAGGGCAGCAGTGCACGGAGGCTGGCGCCGTCTGCGCCATCTGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS CCA 90 bp TACTGGACCACCACGCTGCTGTGCCTGCGTGGAGGAAGGGGGCTGTaGAGGGAGATGGCGGTGTCTCTTGTCCAGGACATCCGTGTGAGC +
Preference number: 5 (lower is better)
Translates to: YWTTTLLCLRGGRGL*REMAVSLVQDIRVS
Trigger: GCTCACACGGATGTCCTGGACAAGAGACACCGCCATCTCCCTCCACAGCCCCCTTCCTCCACGCAGGCACAGCAGCGTGGTGGTCCAGTA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000132831.2
CDS CCA 90 bp GAAAGCAGCACAGGGCTACTGGACCACCACGCTGCTGTGCCTGCGTaGAGGAAGGGGGCTGTGGAGGGAGATGGCGGTGTCTCTTGTCCA +
Preference number: 5 (lower is better)
Translates to: ESSTGLLDHHAAVPA*RKGAVEGDGGVSCP
Trigger: TGGACAAGAGACACCGCCATCTCCCTCCACAGCCCCCTTCCTCCACGCAGGCACAGCAGCGTGGTGGTCCAGTAGCCCTGTGCTGCTTTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000132831.2
CDS-3UTR CAA 90 bp AGGGTTCTCCTCTCCGGGCTGTGGGGTCGGGAGAGGATCCCTGGGAACTGCGTTATCTCGGAACTCAGCTaGGCAGATGGCGCAGACGGC +
Preference number: 5 (lower is better)
Translates to: RVLLSGLWGRERIPGNCVISELS*ADGADG
Trigger: GCCGTCTGCGCCATCTGCCAAGCTGAGTTCCGAGAT...AACGCAGTTCCCAGGGATCCTCTCCCGACCCCACAGCCCGGAGAGGAGAACCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132831.2
CDS GCA 90 bp AGCATCGCAGGGTATCCACAGCAACCGAGCGGCAGAGCGGGCAGGTaGGTTCCCTGTCCAGCCACAGGCAGAGGCACTCTTCACAGAACA +
Preference number: 5 (lower is better)
Translates to: SIAGYPQQPSGRAGR*VPCPATGRGTLHRT
Trigger: TGTTCTGTGAAGAGTGCCTCTGCCTGTGGCTGGACAGGGAACGCACCTGCCCGCTCTGCCGCTCGGTTGCTGTGGATACCCTGCGATGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS CCA 90 bp AACACGTGCTGGCACAGGAGAATCATGGGATCTCGGAACTCAGCTTaGCAGATGGCGCAGACGGCGCCAGCCTCCGTGCACTGCTGCCCT +
Preference number: 5 (lower is better)
Translates to: NTCWHRRIMGSRNSA*QMAQTAPASVHCCP
Trigger: AGGGCAGCAGTGCACGGAGGCTGGCGCCGTCTGCGCCATCTGCCAAGCTGAGTTCCGAGATCCCATGATTCTCCTGTGCCAGCACGTGTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS TCA 90 bp AGCCTCCGTGCACTGCTGCCCTGTGGCTCGGACCCCGTAATTCTGTaGGGTGCAAAGGAGCTTCAATGCTTTCCTGAGTCCGCCCACGCG +
Preference number: 5 (lower is better)
Translates to: SLRALLPCGSDPVIL*GAKELQCFPESAHA
Trigger: CGCGTGGGCGGACTCAGGAAAGCATTGAAGCTCCTTTGCACCTCACAGAATTACGGGGTCCGAGCCACAGGGCAGCAGTGCACGGAGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS CCA 90 bp AGGACACCTGCTCCCGGAGGGTGGAGTTGGCATAGGCAAAGGTGCTaGCCATCCCGATGCACACAGCAATGCCCAGCTTGTGCTGGAAGC +
Preference number: 5 (lower is better)
Translates to: RTPAPGGWSWHRQRC*PSRCTQQCPACAGS
Trigger: GCTTCCAGCACAAGCTGGGCATTGCTGTGTGCATCGGGATGGCCAGCACCTTTGCCTATGCCAACTCCACCCTCCGGGAGCAGGTGTCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS GCA 90 bp TCAAGGACACCTGCTCCCGGAGGGTGGAGTTGGCATAGGCAAAGGTaGTGGCCATCCCGATGCACACAGCAATGCCCAGCTTGTGCTGGA +
Preference number: 5 (lower is better)
Translates to: SRTPAPGGWSWHRQR*WPSRCTQQCPACAG
Trigger: TCCAGCACAAGCTGGGCATTGCTGTGTGCATCGGGATGGCCAGCACCTTTGCCTATGCCAACTCCACCCTCCGGGAGCAGGTGTCCTTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS CCA 90 bp CCGACCTCTTCTCCTTCAAGGACACCTGCTCCCGGAGGGTGGAGTTaGCATAGGCAAAGGTGCTGGCCATCCCGATGCACACAGCAATGC +
Preference number: 5 (lower is better)
Translates to: PTSSPSRTPAPGGWS*HRQRCWPSRCTQQC
Trigger: GCATTGCTGTGTGCATCGGGATGGCCAGCACCTTTGCCTATGCCAACTCCACCCTCCGGGAGCAGGTGTCCTTGAAGGAGAAGAGGTCGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS CCA 90 bp CCAGAACCGACCTCTTCTCCTTCAAGGACACCTGCTCCCGGAGGGTaGAGTTGGCATAGGCAAAGGTGCTGGCCATCCCGATGCACACAG +
Preference number: 5 (lower is better)
Translates to: PEPTSSPSRTPAPGG*SWHRQRCWPSRCTQ
Trigger: CTGTGTGCATCGGGATGGCCAGCACCTTTGCCTATGCCAACTCCACCCTCCGGGAGCAGGTGTCCTTGAAGGAGAAGAGGTCGGTTCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS CCA 90 bp GTCTCTTGTCCAGGACATCCGTGTGAGCCTGGCACAGGAGAATCATaGGATCTCGGAACTCAGCTTGGCAGATGGCGCAGACGGCGCCAG +
Preference number: 5 (lower is better)
Translates to: VSCPGHPCEPGTGES*DLGTQLGRWRRRRQ
Trigger: CTGGCGCCGTCTGCGCCATCTGCCAAGCTGAGTTCCGAGATCCCATGATTCTCCTGTGCCAGGCTCACACGGATGTCCTGGACAAGAGAC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132831.2
CDS-3UTR CAA 90 bp CGCTTCAGCAGTGGGGGATGGTCCCAAGGCTCCGTACCTGTGCCGTTCCCTTTGGGAATGTTGTCCGTGTaGCTACTGTGGCGTCTCTGC +
Preference number: 5 (lower is better)
Translates to: RFSSGGWSQGSVPVPFPLGMLSV*LLWRLC
Trigger: GCAGAGACGCCACAGTAGCAACACGGACAACATTCC...CAAAGGGAACGGCACAGGTACGGAGCCTTGGGACCATCCCCCACTGCTGAAGCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS TCA 90 bp TCAGACTCTCAAATACACCACCCTCATCCACGCTGGCCTCGGGGCTaGGCGCCTGGCTGCGACTTCTGCTTTCAGGTGGAATGTTGTCCG +
Preference number: 5 (lower is better)
Translates to: SDSQIHHPHPRWPRG*APGCDFCFQVECCP
Trigger: CGGACAACATTCCACCTGAAAGCAGAAGTCGCAGCCAGGCGCTCAGCCCCGAGGCCAGCGTGGATGAGGGTGGTGTATTTGAGAGTCTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000154786.8
CDS TCA 90 bp GGCTGTGGAGGGAGATGGCGGTGTCTCTTGTCCAGGACATCCGTGTaGGCCTGGCACAGGAGAATCATGGGATCTCGGAACTCAGCTTGG +
Preference number: 5 (lower is better)
Translates to: GCGGRWRCLLSRTSV*AWHRRIMGSRNSAW
Trigger: CCAAGCTGAGTTCCGAGATCCCATGATTCTCCTGTGCCAGGCTCACACGGATGTCCTGGACAAGAGACACCGCCATCTCCCTCCACAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132831.2
CDS-3UTR CAA 90 bp ATACGCCACTGCAGGGGACACTTTCCCACAGCCTGCTGTCTGGGAAACTGCCTGGCCACGATGAGGCACTaGAGGGCGATGGTGATGTAC +
Preference number: 5 (lower is better)
Translates to: IRHCRGHFPTACCLGNCLATMRH*RAMVMY
Trigger: GTACATCACCATCGCCCTCAAGTGCCTCATCGTGGC...CAGGCAGTTTCCCAGACAGCAGGCTGTGGGAAAGTGTCCCCTGCAGTGGCGTAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS TCA 90 bp TCAGACTCTCAAATACACCACCCTCATCCACGCTGGCCTCGGGGCTaGGCGCCTGGCTGCGACTTCTTTCAGGTGGAATGTTGTCCGTGT +
Preference number: 5 (lower is better)
Translates to: SDSQIHHPHPRWPRG*APGCDFFQVECCPC
Trigger: ACACGGACAACATTCCACCTGAAAGAAGTCGCAGCCAGGCGCTCAGCCCCGAGGCCAGCGTGGATGAGGGTGGTGTATTTGAGAGTCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000121369.8
ENSMUST00000133372.2
CDS-3UTR CAA 90 bp GGAGGCAGGAGAAAGTCCTGGAGGCTGTTTCCCAGGCATCCTTGGGGCTGGGCTCTTTCAGGTGGAATGTaGTCCGTGTTGCTACTGTGG +
Preference number: 5 (lower is better)
Translates to: GGRRKSWRLFPRHPWGWALSGGM*SVLLLW
Trigger: CCACAGTAGCAACACGGACAACATTCCACCTGAAAG...AGCCCAGCCCCAAGGATGCCTGGGAAACAGCCTCCAGGACTTTCTCCTGCCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CAA 90 bp CGCTTCAGCAGTGGGGGATGGTCCCAAGGCTCCGTACCTGTGCCGTTCCCTTTGCTTTCAGGTGGAATGTaGTCCGTGTTGCTACTGTGG +
Preference number: 5 (lower is better)
Translates to: RFSSGGWSQGSVPVPFPLLSGGM*SVLLLW
Trigger: CCACAGTAGCAACACGGACAACATTCCACCTGAAAG...CAAAGGGAACGGCACAGGTACGGAGCCTTGGGACCATCCCCCACTGCTGAAGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CAA 90 bp AGCCTGCTGTCTGGGAAACTGCCTGAGCCCTCTAAACTGGATGAACCCCACTGGGCCACGATGAGGCACTaGAGGGCGATGGTGATGTAC +
Preference number: 5 (lower is better)
Translates to: SLLSGKLPEPSKLDEPHWATMRH*RAMVMY
Trigger: GTACATCACCATCGCCCTCAAGTGCCTCATCGTGGC...CCAGTGGGGTTCATCCAGTTTAGAGGGCTCAGGCAGTTTCCCAGACAGCAGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CAA 90 bp AGGCAGGCAGAATTCCAGAGGCTTCTGTGCGGTCACCTGTGCTATTTCGTCCCAACAGCCAGGATGATCTaGGGCAGGGCCACGATGAGG +
Preference number: 5 (lower is better)
Translates to: RQAEFQRLLCGHLCYFVPTARMI*GRATMR
Trigger: CCTCATCGTGGCCCTGCCCAAGATCATCCTGGCTGT...TGGGACGAAATAGCACAGGTGACCGCACAGAAGCCTCTGGAATTCTGCCTGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CAA 90 bp ATACGCCACTGCAGGGGACACTTTCCCACAGCCTGCTGTCTGGGAAACTGCCTGTCCCCCATGATGTACTaGTACCACAGCTGGATGGGG +
Preference number: 5 (lower is better)
Translates to: IRHCRGHFPTACCLGNCLSPMMY*YHSWMG
Trigger: CCCCATCCAGCTGTGGTACAAGTACATCATGGGGGA...CAGGCAGTTTCCCAGACAGCAGGCTGTGGGAAAGTGTCCCCTGCAGTGGCGTAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CAA 90 bp TTCCCTGGAAGGATGGGAACTGAAGAGCATCTCACTGTCCCAGGGGATGCTCCAATCTCGGAACTCAGCTaGGCAGATGGCGCAGACGGC +
Preference number: 5 (lower is better)
Translates to: FPGRMGTEEHLTVPGDAPISELS*ADGADG
Trigger: GCCGTCTGCGCCATCTGCCAAGCTGAGTTCCGAGAT...TGGAGCATCCCCTGGGACAGTGAGATGCTCTTCAGTTCCCATCCTTCCAGGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS GCA 90 bp GCGCCTGGCTGCGACTTCTGCTTTCAGGTGGAATGTTGTCCGTGTTaGTACTGTGGCGTCTCTGCATTTTCCTTAGCACCTGGTGCGCAG +
Preference number: 5 (lower is better)
Translates to: APGCDFCFQVECCPC*YCGVSAFSLAPGAQ
Trigger: CTGCGCACCAGGTGCTAAGGAAAATGCAGAGACGCCACAGTAGCAACACGGACAACATTCCACCTGAAAGCAGAAGTCGCAGCCAGGCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000154786.8
CDS-3UTR CAA 90 bp ATACGCCACTGCAGGGGACACTTTCCCACAGCCTGCTGTCTGGGAAACTGCCTGTCCAGTGTCTCCAGGTaGGGCTTCAGGAATATGAGG +
Preference number: 5 (lower is better)
Translates to: IRHCRGHFPTACCLGNCLSSVSR*GFRNMR
Trigger: CCTCATATTCCTGAAGCCCAACCTGGAGACACTGGA...CAGGCAGTTTCCCAGACAGCAGGCTGTGGGAAAGTGTCCCCTGCAGTGGCGTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS TCA 90 bp GGACGTACATGGTATTCCCTGCCAGGAAGGCCAGAATCCACAAGATaGCCAGAACCGACCTCTTCTCCTTCAAGGACACCTGCTCCCGGA +
Preference number: 5 (lower is better)
Translates to: GRTWYSLPGRPESTR*PEPTSSPSRTPAPG
Trigger: TCCGGGAGCAGGTGTCCTTGAAGGAGAAGAGGTCGGTTCTGGTCATCTTGTGGATTCTGGCCTTCCTGGCAGGGAATACCATGTACGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS TCA 90 bp GGACCCCGTAATTCTGTGAGGTGCAAAGGAGCTTCAATGCTTTCCTaGGTCCGCCCACGCGACCACAGATGTCGAACGACTTGCAGAGAC +
Preference number: 5 (lower is better)
Translates to: GPRNSVRCKGASMLS*VRPRDHRCRTTCRD
Trigger: GTCTCTGCAAGTCGTTCGACATCTGTGGTCGCGTGGGCGGACTCAGGAAAGCATTGAAGCTCCTTTGCACCTCACAGAATTACGGGGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CAA 90 bp AGAAGGGCCCATCCTCCCTTCCCTCTTAGGACATCCAGGCAGTGGGATTGCTTAGGAATGTTGTCCGTGTaGCTACTGTGGCGTCTCTGC +
Preference number: 5 (lower is better)
Translates to: RRAHPPFPLRTSRQWDCLGMLSV*LLWRLC
Trigger: GCAGAGACGCCACAGTAGCAACACGGACAACATTCC...TAAGCAATCCCACTGCCTGGATGTCCTAAGAGGGAAGGGAGGATGGGCCCTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CAA 90 bp CCTGAGCCCTCTAAACTGGATGAACCCCACTGGCCATCTGAGGTGTTCCCTGGATGCTGGAAGCACAGTTaGGCCAGCAGGATGAGGATA +
Preference number: 5 (lower is better)
Translates to: PEPSKLDEPHWPSEVFPGCWKHS*ASRMRI
Trigger: TATCCTCATCCTGCTGGCCAAACTGTGCTTCCAGCA...TCCAGGGAACACCTCAGATGGCCAGTGGGGTTCATCCAGTTTAGAGGGCTCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CAA 90 bp CCTGAGCCCTCTAAACTGGATGAACCCCACTGGCCATCTGAGGTGTTCCCTGGAACAGCAATGCCCAGCTaGTGCTGGAAGCACAGTTTG +
Preference number: 5 (lower is better)
Translates to: PEPSKLDEPHWPSEVFPGTAMPS*CWKHSL
Trigger: CAAACTGTGCTTCCAGCACAAGCTGGGCATTGCTGT...TCCAGGGAACACCTCAGATGGCCAGTGGGGTTCATCCAGTTTAGAGGGCTCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS TCA 90 bp AAGCACAGTTTGGCCAGCAGGATGAGGATAAAGGGCAGTCCTTTCTaGAGCCAGGAGATCACAGCCTTGAGCTCAGACAGTGCGGGTGCT +
Preference number: 5 (lower is better)
Translates to: KHSLASRMRIKGSPF*SQEITALSSDSAGA
Trigger: AGCACCCGCACTGTCTGAGCTCAAGGCTGTGATCTCCTGGCTTCAGAAAGGACTGCCCTTTATCCTCATCCTGCTGGCCAAACTGTGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
ENSMUST00000154786.8
CDS CCA 90 bp CTGCGACTTCTGCTTTCAGGTGGAATGTTGTCCGTGTTGCTACTGTaGCGTCTCTGCATTTTCCTTAGCACCTGGTGCGCAGCAAGGAGC +
Preference number: 5 (lower is better)
Translates to: LRLLLSGGMLSVLLL*RLCIFLSTWCAARS
Trigger: GCTCCTTGCTGCGCACCAGGTGCTAAGGAAAATGCAGAGACGCCACAGTAGCAACACGGACAACATTCCACCTGAAAGCAGAAGTCGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000154786.8
CDS CCA 90 bp TGGCTGCGACTTCTTTCAGGTGGAATGTTGTCCGTGTTGCTACTGTaGCGTCTCTGCATTTTCCTTAGCACCTGGTGCGCAGCAAGGAGC +
Preference number: 5 (lower is better)
Translates to: WLRLLSGGMLSVLLL*RLCIFLSTWCAARS
Trigger: GCTCCTTGCTGCGCACCAGGTGCTAAGGAAAATGCAGAGACGCCACAGTAGCAACACGGACAACATTCCACCTGAAAGAAGTCGCAGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000121369.8
ENSMUST00000133372.2
CDS-3UTR CAA 90 bp TTCCCTCTTAGGACATCCAGGCAGTGGGATTGCTTAGCATCATGGCCATTGCCACAGGAGATCACAGCCTaGAGCTCAGACAGTGCGGGT +
Preference number: 5 (lower is better)
Translates to: FPLRTSRQWDCLASWPLPQEITA*SSDSAG
Trigger: ACCCGCACTGTCTGAGCTCAAGGCTGTGATCTCCTG...TGGCAATGGCCATGATGCTAAGCAATCCCACTGCCTGGATGTCCTAAGAGGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CAA 90 bp AGGCAGGCAGAATTCCAGAGGCTTCTGTGCGGTCACCTGTGCTATTTCGTCCCATGCTGGAAGCACAGTTaGGCCAGCAGGATGAGGATA +
Preference number: 5 (lower is better)
Translates to: RQAEFQRLLCGHLCYFVPCWKHS*ASRMRI
Trigger: TATCCTCATCCTGCTGGCCAAACTGTGCTTCCAGCA...TGGGACGAAATAGCACAGGTGACCGCACAGAAGCCTCTGGAATTCTGCCTGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CAA 90 bp AGAAGGGCCCATCCTCCCTTCCCTCTTAGGACATCCAGGCAGTGGGATTGCTTAACAGCAATGCCCAGCTaGTGCTGGAAGCACAGTTTG +
Preference number: 5 (lower is better)
Translates to: RRAHPPFPLRTSRQWDCLTAMPS*CWKHSL
Trigger: CAAACTGTGCTTCCAGCACAAGCTGGGCATTGCTGT...TAAGCAATCCCACTGCCTGGATGTCCTAAGAGGGAAGGGAGGATGGGCCCTTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CAA 90 bp TTCCCTGGAAGGATGGGAACTGAAGAGCATCTCACTGTCCCAGGGGATGCTCCATCCAGTGTCTCCAGGTaGGGCTTCAGGAATATGAGG +
Preference number: 5 (lower is better)
Translates to: FPGRMGTEEHLTVPGDAPSSVSR*GFRNMR
Trigger: CCTCATATTCCTGAAGCCCAACCTGGAGACACTGGA...TGGAGCATCCCCTGGGACAGTGAGATGCTCTTCAGTTCCCATCCTTCCAGGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS GCA 90 bp GAGCTGCTGGGAGCTGAAGGTATAAAGGACGTACATGGTATTCCCTaGCAGGAAGGCCAGAATCCACAAGATGACCAGAACCGACCTCTT +
Preference number: 5 (lower is better)
Translates to: ELLGAEGIKDVHGIP*QEGQNPQDDQNRPL
Trigger: AAGAGGTCGGTTCTGGTCATCTTGTGGATTCTGGCCTTCCTGGCAGGGAATACCATGTACGTCCTTTATACCTTCAGCTCCCAGCAGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CAA 90 bp TTAATCTCAGGTCCTCACACACACAAGACTTGGAGGACTCAGAGGGATTTGAGTACAGCCAGGATGATCTaGGGCAGGGCCACGATGAGG +
Preference number: 5 (lower is better)
Translates to: LISGPHTHKTWRTQRDLSTARMI*GRATMR
Trigger: CCTCATCGTGGCCCTGCCCAAGATCATCCTGGCTGT...ACTCAAATCCCTCTGAGTCCTCCAAGTCTTGTGTGTGTGAGGACCTGAGATTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CAA 90 bp TTAATCTCAGGTCCTCACACACACAAGACTTGGAGGACTCAGAGGGATTTGAGTATCTCGGAACTCAGCTaGGCAGATGGCGCAGACGGC +
Preference number: 5 (lower is better)
Translates to: LISGPHTHKTWRTQRDLSISELS*ADGADG
Trigger: GCCGTCTGCGCCATCTGCCAAGCTGAGTTCCGAGAT...ACTCAAATCCCTCTGAGTCCTCCAAGTCTTGTGTGTGTGAGGACCTGAGATTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CAA 90 bp TTAATCTCAGGTCCTCACACACACAAGACTTGGAGGACTCAGAGGGATTTGAGTTCCCCCATGATGTACTaGTACCACAGCTGGATGGGG +
Preference number: 5 (lower is better)
Translates to: LISGPHTHKTWRTQRDLSSPMMY*YHSWMG
Trigger: CCCCATCCAGCTGTGGTACAAGTACATCATGGGGGA...ACTCAAATCCCTCTGAGTCCTCCAAGTCTTGTGTGTGTGAGGACCTGAGATTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CAA 90 bp TTCCCTCTTAGGACATCCAGGCAGTGGGATTGCTTAGCATCATGGCCATTGCCAAACTTTCCCTTGGATTaGACAGCCAGGATGATCTTG +
Preference number: 5 (lower is better)
Translates to: FPLRTSRQWDCLASWPLPNFPLD*TARMIL
Trigger: CAAGATCATCCTGGCTGTCAAATCCAAGGGAAAGTT...TGGCAATGGCCATGATGCTAAGCAATCCCACTGCCTGGATGTCCTAAGAGGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS-3UTR CAA 90 bp TTCTGTGCGGTCACCTGTGCTATTTCGTCCCAGGTTTCCAATCAGAGAGTTTCCAACTTTCCCTTGGATTaGACAGCCAGGATGATCTTG +
Preference number: 5 (lower is better)
Translates to: FCAVTCAISSQVSNQRVSNFPLD*TARMIL
Trigger: CAAGATCATCCTGGCTGTCAAATCCAAGGGAAAGTT...GGAAACTCTCTGATTGGAAACCTGGGACGAAATAGCACAGGTGACCGCACAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS GCA 72 bp GGGCCTGGCGGTGGTGGTAGGTGCTTCCTTCGGCGCTaGGGCCACCGGCCTCATCCCTGGTGGCTGGCATGG +
Preference number: 6 (lower is better)
Translates to: GPGGGGRCFLRR*GHRPHPWWLAW
Trigger: CCATGCCAGCCACCAGGGATGAGGCCGGTGGCCGCAGCGCCGAAGGAAGCACCTACCACCACCGCCAGGCCC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
ENSMUST00000154786.8
CDS TCA 72 bp TGCTGGAGTTCCGGGCTGCTCGTCGACCCCTTCCTCTaGGTGTCCACGGTGGTCCCCACCCACGTGCTGCAG +
Preference number: 6 (lower is better)
Translates to: CWSSGLLVDPFL*VSTVVPTHVLQ
Trigger: CTGCAGCACGTGGGTGGGGACCACCGTGGACACTCAGAGGAAGGGGTCGACGAGCAGCCCGGAACTCCAGCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
ENSMUST00000154786.8
CDS GCA 72 bp CAGCTTGGCAGATGGCGCAGACGGCGCCAGCCTCCGTaGACTGCTGCCCTGTGGCTCGGACCCCGTAATTCT +
Preference number: 6 (lower is better)
Translates to: QLGRWRRRRQPP*TAALWLGPRNS
Trigger: AGAATTACGGGGTCCGAGCCACAGGGCAGCAGTGCACGGAGGCTGGCGCCGTCTGCGCCATCTGCCAAGCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS GCA 72 bp GGGTATCCACAGCAACCGAGCGGCAGAGCGGGCAGGTaGGTTCCCTGTCCAGCCACAGGCAGAGGCACTCTT +
Preference number: 6 (lower is better)
Translates to: GYPQQPSGRAGR*VPCPATGRGTL
Trigger: AAGAGTGCCTCTGCCTGTGGCTGGACAGGGAACGCACCTGCCCGCTCTGCCGCTCGGTTGCTGTGGATACCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS CCA 72 bp CGCAGACGGCGCCAGCCTCCGTGCACTGCTGCCCTGTaGCTCGGACCCCGTAATTCTGTGAGGTGCAAAGGA +
Preference number: 6 (lower is better)
Translates to: RRRRQPPCTAAL*LGPRNSVRCKG
Trigger: TCCTTTGCACCTCACAGAATTACGGGGTCCGAGCCACAGGGCAGCAGTGCACGGAGGCTGGCGCCGTCTGCG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS CAA 90 bp CGTGTGAGCCTGGCACAGGAGAATCATGGGATCTCGGAACTCAGCTaGGCAGATGGCGCAGACGGCGCCAGCCTCCGTGCACTGCTGCCC +
Preference number: 6 (lower is better)
Translates to: RVSLAQENHGISELS*ADGADGASLRALLP
Trigger: GGGCAGCAGTGCACGGAGGCTGGCGCCGTCTGCGCCATCTGCCAAGCTGAGTTCCGAGATCCCATGATTCTCCTGTGCCAGGCTCACACG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132831.2
CDS GCA 72 bp TTGAGCTCAGACAGTGCGGGTGCTGGAGTTCCGGGCTaGTCGTCGACCCCTTCCTCTGAGTGTCCACGGTGG +
Preference number: 6 (lower is better)
Translates to: LSSDSAGAGVPG*SSTPSSECPRW
Trigger: CCACCGTGGACACTCAGAGGAAGGGGTCGACGAGCAGCCCGGAACTCCAGCACCCGCACTGTCTGAGCTCAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
ENSMUST00000154786.8
CDS GCA 72 bp CCAGGAGATCACAGCCTTGAGCTCAGACAGTGCGGGTaGTGGAGTTCCGGGCTGCTCGTCGACCCCTTCCTC +
Preference number: 6 (lower is better)
Translates to: PGDHSLELRQCG*WSSGLLVDPFL
Trigger: GAGGAAGGGGTCGACGAGCAGCCCGGAACTCCAGCACCCGCACTGTCTGAGCTCAAGGCTGTGATCTCCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
ENSMUST00000154786.8
CDS GCA 72 bp CTGAAGCCAGGAGATCACAGCCTTGAGCTCAGACAGTaGGGGTGCTGGAGTTCCGGGCTGCTCGTCGACCCC +
Preference number: 6 (lower is better)
Translates to: LKPGDHSLELRQ*GCWSSGLLVDP
Trigger: GGGGTCGACGAGCAGCCCGGAACTCCAGCACCCGCACTGTCTGAGCTCAAGGCTGTGATCTCCTGGCTTCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
ENSMUST00000154786.8
CDS GCA 72 bp AAAGCAGCACAGGGCTACTGGACCACCACGCTGCTGTaGCTGCGTGGAGGAAGGGGGCTGTGGAGGGAGATG +
Preference number: 6 (lower is better)
Translates to: KAAQGYWTTTLL*LRGGRGLWREM
Trigger: CATCTCCCTCCACAGCCCCCTTCCTCCACGCAGGCACAGCAGCGTGGTGGTCCAGTAGCCCTGTGCTGCTTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000132831.2
CDS CCA 72 bp CCACCCTCATCCACGCTGGCCTCGGGGCTGAGCGCCTaGCTGCGACTTCTGCTTTCAGGTGGAATGTTGTCC +
Preference number: 6 (lower is better)
Translates to: PPSSTLASGLSA*LRLLLSGGMLS
Trigger: GGACAACATTCCACCTGAAAGCAGAAGTCGCAGCCAGGCGCTCAGCCCCGAGGCCAGCGTGGATGAGGGTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000154786.8
CDS CCA 72 bp GGAGAATCATGGGATCTCGGAACTCAGCTTGGCAGATaGCGCAGACGGCGCCAGCCTCCGTGCACTGCTGCC +
Preference number: 6 (lower is better)
Translates to: GESWDLGTQLGR*RRRRQPPCTAA
Trigger: GGCAGCAGTGCACGGAGGCTGGCGCCGTCTGCGCCATCTGCCAAGCTGAGTTCCGAGATCCCATGATTCTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
ENSMUST00000132831.2
CDS CCA 72 bp CCACCCTCATCCACGCTGGCCTCGGGGCTGAGCGCCTaGCTGCGACTTCTTTCAGGTGGAATGTTGTCCGTG +
Preference number: 6 (lower is better)
Translates to: PPSSTLASGLSA*LRLLSGGMLSV
Trigger: CACGGACAACATTCCACCTGAAAGAAGTCGCAGCCAGGCGCTCAGCCCCGAGGCCAGCGTGGATGAGGGTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000121369.8
ENSMUST00000133372.2
CDS CCA 72 bp ACCACGCTGCTGTGCCTGCGTGGAGGAAGGGGGCTGTaGAGGGAGATGGCGGTGTCTCTTGTCCAGGACATC +
Preference number: 6 (lower is better)
Translates to: TTLLCLRGGRGL*REMAVSLVQDI
Trigger: GATGTCCTGGACAAGAGACACCGCCATCTCCCTCCACAGCCCCCTTCCTCCACGCAGGCACAGCAGCGTGGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000132831.2
CDS CAA 90 bp GAACACGTGCTGGCACAGGAGAATCATGGGATCTCGGAACTCAGCTaGGCAGATGGCGCAGACGGCGCCAGCCTCCGTGCACTGCTGCCC +
Preference number: 6 (lower is better)
Translates to: EHVLAQENHGISELS*ADGADGASLRALLP
Trigger: GGGCAGCAGTGCACGGAGGCTGGCGCCGTCTGCGCCATCTGCCAAGCTGAGTTCCGAGATCCCATGATTCTCCTGTGCCAGCACGTGTTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS GCA 72 bp CCTGCTCCCGGAGGGTGGAGTTGGCATAGGCAAAGGTaGTGGCCATCCCGATGCACACAGCAATGCCCAGCT +
Preference number: 6 (lower is better)
Translates to: PAPGGWSWHRQR*WPSRCTQQCPA
Trigger: AGCTGGGCATTGCTGTGTGCATCGGGATGGCCAGCACCTTTGCCTATGCCAACTCCACCCTCCGGGAGCAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS CCA 72 bp TGGCACAGGAGAATCATGGGATCTCGGAACTCAGCTTaGCAGATGGCGCAGACGGCGCCAGCCTCCGTGCAC +
Preference number: 6 (lower is better)
Translates to: WHRRIMGSRNSA*QMAQTAPASVH
Trigger: GTGCACGGAGGCTGGCGCCGTCTGCGCCATCTGCCAAGCTGAGTTCCGAGATCCCATGATTCTCCTGTGCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
ENSMUST00000132831.2
CDS TCA 72 bp CAAATACACCACCCTCATCCACGCTGGCCTCGGGGCTaGGCGCCTGGCTGCGACTTCTGCTTTCAGGTGGAA +
Preference number: 6 (lower is better)
Translates to: QIHHPHPRWPRG*APGCDFCFQVE
Trigger: TTCCACCTGAAAGCAGAAGTCGCAGCCAGGCGCTCAGCCCCGAGGCCAGCGTGGATGAGGGTGGTGTATTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000154786.8
CDS CCA 72 bp GCTCCCGGAGGGTGGAGTTGGCATAGGCAAAGGTGCTaGCCATCCCGATGCACACAGCAATGCCCAGCTTGT +
Preference number: 6 (lower is better)
Translates to: APGGWSWHRQRC*PSRCTQQCPAC
Trigger: ACAAGCTGGGCATTGCTGTGTGCATCGGGATGGCCAGCACCTTTGCCTATGCCAACTCCACCCTCCGGGAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS TCA 72 bp AGGGCAGTCCTTTCTGAAGCCAGGAGATCACAGCCTTaGGCTCAGACAGTGCGGGTGCTGGAGTTCCGGGCT +
Preference number: 6 (lower is better)
Translates to: RAVLSEARRSQP*AQTVRVLEFRA
Trigger: AGCCCGGAACTCCAGCACCCGCACTGTCTGAGCTCAAGGCTGTGATCTCCTGGCTTCAGAAAGGACTGCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
ENSMUST00000154786.8
CDS TCA 72 bp CAAATACACCACCCTCATCCACGCTGGCCTCGGGGCTaGGCGCCTGGCTGCGACTTCTTTCAGGTGGAATGT +
Preference number: 6 (lower is better)
Translates to: QIHHPHPRWPRG*APGCDFFQVEC
Trigger: ACATTCCACCTGAAAGAAGTCGCAGCCAGGCGCTCAGCCCCGAGGCCAGCGTGGATGAGGGTGGTGTATTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000121369.8
ENSMUST00000133372.2
CDS CCA 72 bp TCTCCTTCAAGGACACCTGCTCCCGGAGGGTGGAGTTaGCATAGGCAAAGGTGCTGGCCATCCCGATGCACA +
Preference number: 6 (lower is better)
Translates to: SPSRTPAPGGWS*HRQRCWPSRCT
Trigger: TGTGCATCGGGATGGCCAGCACCTTTGCCTATGCCAACTCCACCCTCCGGGAGCAGGTGTCCTTGAAGGAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS CCA 72 bp ACCTCTTCTCCTTCAAGGACACCTGCTCCCGGAGGGTaGAGTTGGCATAGGCAAAGGTGCTGGCCATCCCGA +
Preference number: 6 (lower is better)
Translates to: TSSPSRTPAPGG*SWHRQRCWPSR
Trigger: TCGGGATGGCCAGCACCTTTGCCTATGCCAACTCCACCCTCCGGGAGCAGGTGTCCTTGAAGGAGAAGAGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS CCA 72 bp TCATCGCAATCTCAGAGGAAAGCAGCACAGGGCTACTaGACCACCACGCTGCTGTGCCTGCGTGGAGGAAGG +
Preference number: 6 (lower is better)
Translates to: SSQSQRKAAQGY*TTTLLCLRGGR
Trigger: CCTTCCTCCACGCAGGCACAGCAGCGTGGTGGTCCAGTAGCCCTGTGCTGCTTTCCTCTGAGATTGCGATGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132831.2
CDS TCA 72 bp GGGAGATGGCGGTGTCTCTTGTCCAGGACATCCGTGTaGGCCTGGCACAGGAGAATCATGGGATCTCGGAAC +
Preference number: 6 (lower is better)
Translates to: GRWRCLLSRTSV*AWHRRIMGSRN
Trigger: GTTCCGAGATCCCATGATTCTCCTGTGCCAGGCTCACACGGATGTCCTGGACAAGAGACACCGCCATCTCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132831.2
CDS CCA 72 bp CCAGGACATCCGTGTGAGCCTGGCACAGGAGAATCATaGGATCTCGGAACTCAGCTTGGCAGATGGCGCAGA +
Preference number: 6 (lower is better)
Translates to: PGHPCEPGTGES*DLGTQLGRWRR
Trigger: TCTGCGCCATCTGCCAAGCTGAGTTCCGAGATCCCATGATTCTCCTGTGCCAGGCTCACACGGATGTCCTGG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132831.2
CDS TCA 72 bp GCACTGCTGCCCTGTGGCTCGGACCCCGTAATTCTGTaGGGTGCAAAGGAGCTTCAATGCTTTCCTGAGTCC +
Preference number: 6 (lower is better)
Translates to: ALLPCGSDPVIL*GAKELQCFPES
Trigger: GGACTCAGGAAAGCATTGAAGCTCCTTTGCACCTCACAGAATTACGGGGTCCGAGCCACAGGGCAGCAGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS GCA 72 bp TGGAGTTGGCATAGGCAAAGGTGCTGGCCATCCCGATaGACACAGCAATGCCCAGCTTGTGCTGGAAGCACA +
Preference number: 6 (lower is better)
Translates to: WSWHRQRCWPSR*TQQCPACAGST
Trigger: TGTGCTTCCAGCACAAGCTGGGCATTGCTGTGTGCATCGGGATGGCCAGCACCTTTGCCTATGCCAACTCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
ENSMUST00000154786.8
CDS CCA 72 bp GAGGAGTCGTCCCCCATGATGTACTTGTACCACAGCTaGATGGGGACAAGAGACCTGAACAGCTGGCTCAGC +
Preference number: 6 (lower is better)
Translates to: EESSPMMYLYHS*MGTRDLNSWLS
Trigger: GCTGAGCCAGCTGTTCAGGTCTCTTGTCCCCATCCAGCTGTGGTACAAGTACATCATGGGGGACGACTCCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS CAA 90 bp AGCGCCTGGCTGCGACTTCTGCTTTCAGGTGGAATGTTGTCCGTGTaGCTACTGTGGCGTCTCTGCATTTTCCTTAGCACCTGGTGCGCA +
Preference number: 6 (lower is better)
Translates to: SAWLRLLLSGGMLSV*LLWRLCIFLSTWCA
Trigger: TGCGCACCAGGTGCTAAGGAAAATGCAGAGACGCCACAGTAGCAACACGGACAACATTCCACCTGAAAGCAGAAGTCGCAGCCAGGCGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000154786.8
CDS CAA 90 bp CTGAGCGCCTGGCTGCGACTTCTTTCAGGTGGAATGTTGTCCGTGTaGCTACTGTGGCGTCTCTGCATTTTCCTTAGCACCTGGTGCGCA +
Preference number: 6 (lower is better)
Translates to: LSAWLRLLSGGMLSV*LLWRLCIFLSTWCA
Trigger: TGCGCACCAGGTGCTAAGGAAAATGCAGAGACGCCACAGTAGCAACACGGACAACATTCCACCTGAAAGAAGTCGCAGCCAGGCGCTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000121369.8
ENSMUST00000133372.2
CDS CCA 72 bp ACTCTTCACAGAACACGTGCTGGCACAGGAGAATCATaGGATCTCGGAACTCAGCTTGGCAGATGGCGCAGA +
Preference number: 6 (lower is better)
Translates to: TLHRTRAGTGES*DLGTQLGRWRR
Trigger: TCTGCGCCATCTGCCAAGCTGAGTTCCGAGATCCCATGATTCTCCTGTGCCAGCACGTGTTCTGTGAAGAGT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS CAA 72 bp CTGAGCGCCTGGCTGCGACTTCTTTCAGGTGGAATGTaGTCCGTGTTGCTACTGTGGCGTCTCTGCATTTTC +
Preference number: 6 (lower is better)
Translates to: LSAWLRLLSGGM*SVLLLWRLCIF
Trigger: GAAAATGCAGAGACGCCACAGTAGCAACACGGACAACATTCCACCTGAAAGAAGTCGCAGCCAGGCGCTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000121369.8
ENSMUST00000133372.2
CDS TCA 72 bp TGGTATTCCCTGCCAGGAAGGCCAGAATCCACAAGATaGCCAGAACCGACCTCTTCTCCTTCAAGGACACCT +
Preference number: 6 (lower is better)
Translates to: WYSLPGRPESTR*PEPTSSPSRTP
Trigger: AGGTGTCCTTGAAGGAGAAGAGGTCGGTTCTGGTCATCTTGTGGATTCTGGCCTTCCTGGCAGGGAATACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8
CDS CCA 72 bp CTGCTTTCAGGTGGAATGTTGTCCGTGTTGCTACTGTaGCGTCTCTGCATTTTCCTTAGCACCTGGTGCGCA +
Preference number: 6 (lower is better)
Translates to: LLSGGMLSVLLL*RLCIFLSTWCA
Trigger: TGCGCACCAGGTGCTAAGGAAAATGCAGAGACGCCACAGTAGCAACACGGACAACATTCCACCTGAAAGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000154786.8
CDS GCA 72 bp GGCTGCGACTTCTTTCAGGTGGAATGTTGTCCGTGTTaGTACTGTGGCGTCTCTGCATTTTCCTTAGCACCT +
Preference number: 6 (lower is better)
Translates to: GCDFFQVECCPC*YCGVSAFSLAP
Trigger: AGGTGCTAAGGAAAATGCAGAGACGCCACAGTAGCAACACGGACAACATTCCACCTGAAAGAAGTCGCAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000121369.8
ENSMUST00000133372.2
CDS CCA 72 bp CTTCTTTCAGGTGGAATGTTGTCCGTGTTGCTACTGTaGCGTCTCTGCATTTTCCTTAGCACCTGGTGCGCA +
Preference number: 6 (lower is better)
Translates to: LLSGGMLSVLLL*RLCIFLSTWCA
Trigger: TGCGCACCAGGTGCTAAGGAAAATGCAGAGACGCCACAGTAGCAACACGGACAACATTCCACCTGAAAGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000121369.8
ENSMUST00000133372.2
CDS CAA 72 bp CTGCGACTTCTGCTTTCAGGTGGAATGTTGTCCGTGTaGCTACTGTGGCGTCTCTGCATTTTCCTTAGCACC +
Preference number: 6 (lower is better)
Translates to: LRLLLSGGMLSV*LLWRLCIFLST
Trigger: GGTGCTAAGGAAAATGCAGAGACGCCACAGTAGCAACACGGACAACATTCCACCTGAAAGCAGAAGTCGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000154786.8
CDS GCA 72 bp TGCGACTTCTGCTTTCAGGTGGAATGTTGTCCGTGTTaGTACTGTGGCGTCTCTGCATTTTCCTTAGCACCT +
Preference number: 6 (lower is better)
Translates to: CDFCFQVECCPC*YCGVSAFSLAP
Trigger: AGGTGCTAAGGAAAATGCAGAGACGCCACAGTAGCAACACGGACAACATTCCACCTGAAAGCAGAAGTCGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000154786.8
CDS GCA 72 bp GGAGCTGAAGGTATAAAGGACGTACATGGTATTCCCTaGCAGGAAGGCCAGAATCCACAAGATGACCAGAAC +
Preference number: 6 (lower is better)
Translates to: GAEGIKDVHGIP*QEGQNPQDDQN
Trigger: GTTCTGGTCATCTTGTGGATTCTGGCCTTCCTGGCAGGGAATACCATGTACGTCCTTTATACCTTCAGCTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117177.8
ENSMUST00000121369.8