RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RNFT1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020521

Ensembl transcript IDs: ENSMUST00000020827.7

Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTTCCCCTGAGTGAAAGTTGCTGTTTTCTCCCTTTCTCCTCGATGTaGAATTCAGCCAGGACACAGTGCGCACTAAGCAGGCACTCCACC +
Preference number: 1 (lower is better)
Translates to: LPLSESCCFLPFSSM*NSARTQCALSRHST
Trigger: GGTGGAGTGCCTGCTTAGTGCGCACTGTGTCCTGGCTGAATTCCACATCGAGGAGAAAGGGAGAAAACAGCAACTTTCACTCAGGGGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR TCA 90 bp TGCAGAAATCAGCTGGAGATGACTAATGTTCTGGCTTCCCCTGAGTaGAAGTTGCTGTTTTCTCCCTTTCTCCTCGATGTGGAATTCAGC +
Preference number: 1 (lower is better)
Translates to: CRNQLEMTNVLASPE*KLLFSPFLLDVEFS
Trigger: GCTGAATTCCACATCGAGGAGAAAGGGAGAAAACAGCAACTTTCACTCAGGGGAAGCCAGAACATTAGTCATCTCCAGCTGATTTCTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR GCA 90 bp CACGACTTTAATCCCAGCATTCAGCATAAACTCTGGTCCTGGAACTaGAGCACATGTTCTAATCTGCTAAAGCCATCTCTAGAACCCAGC +
Preference number: 1 (lower is better)
Translates to: HDFNPSIQHKLWSWN*STCSNLLKPSLEPS
Trigger: GCTGGGTTCTAGAGATGGCTTTAGCAGATTAGAACATGTGCTGCAGTTCCAGGACCAGAGTTTATGCTGAATGCTGGGATTAAAGTCGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR GCA 90 bp GAGGAAACACAAGGAAAGGTAAAGTGCGCCATTACCTTTTCTTCTTaGAGAAATCAGCTGGAGATGACTAATGTTCTGGCTTCCCCTGAG +
Preference number: 1 (lower is better)
Translates to: EETQGKVKCAITFSS*RNQLEMTNVLASPE
Trigger: CTCAGGGGAAGCCAGAACATTAGTCATCTCCAGCTGATTTCTGCAAGAAGAAAAGGTAATGGCGCACTTTACCTTTCCTTGTGTTTCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR GCA 90 bp TGGACATTTATTTTTATGTATATAGGTGTTTTGCCTGTATGTGTCTaGATCATGTGTGCATTGCTCAAGAAAGCCAGAAGAGGGCATCAG +
Preference number: 1 (lower is better)
Translates to: WTFIFMYIGVLPVCV*IMCALLKKARRGHQ
Trigger: CTGATGCCCTCTTCTGGCTTTCTTGAGCAATGCACACATGATGCAGACACATACAGGCAAAACACCTATATACATAAAAATAAATGTCCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR CAA 90 bp CACCCACAGGCCTCTGGAGCAACAGTGCTCTTCACTGCTGAGCCATaGCTCTATGCCCTAGCAGCATTTCTCAGTGCTGGGACAGCAACT +
Preference number: 2 (lower is better)
Translates to: HPQASGATVLFTAEP*LYALAAFLSAGTAT
Trigger: AGTTGCTGTCCCAGCACTGAGAAATGCTGCTAGGGCATAGAGCAATGGCTCAGCAGTGAAGAGCACTGTTGCTCCAGAGGCCTGTGGGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR CAA 90 bp TCAGCCAGGACACAGTGCGCACTAAGCAGGCACTCCACCACAGCCTaGGGTGCAAGCTTTCATATCTCAACAGGTGGTGATTGTAAAACT +
Preference number: 2 (lower is better)
Translates to: SARTQCALSRHSTTA*GASFHISTGGDCKT
Trigger: AGTTTTACAATCACCACCTGTTGAGATATGAAAGCTTGCACCCAAGGCTGTGGTGGAGTGCCTGCTTAGTGCGCACTGTGTCCTGGCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR-3UTR GCA 90 bp CTTCACAGGAGCAATGCTGTGCCTTTCGAGGGCATGGTTTTGGTTTCTAGTACTGCATCATGTGTGCATTaGTCAAGAAAGCCAGAAGAG +
Preference number: 2 (lower is better)
Translates to: LHRSNAVPFEGMVLVSSTASCVH*SRKPEE
Trigger: CTCTTCTGGCTTTCTTGAGCAATGCACACATGATGC...AGTACTAGAAACCAAAACCATGCCCTCGAAAGGCACAGCATTGCTCCTGTGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR-3UTR TCA 90 bp CCAGCATTCAGCATAAACTCTGGTCCTGGAACTGCAGCACATGTTCTAATCTGCTCAGGAAACAGTACCTaGACCCCTTTAAAATGGCTA +
Preference number: 2 (lower is better)
Translates to: PAFSINSGPGTAAHVLICSGNST*TPLKWL
Trigger: TAGCCATTTTAAAGGGGTTCAGGTACTGTTTCCTGA...GCAGATTAGAACATGTGCTGCAGTTCCAGGACCAGAGTTTATGCTGAATGCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR-3UTR TCA 90 bp GAGGAAACACAAGGAAAGGTAAAGTGCGCCATTACCTTTTCTTCTTGCAGAAATTGTTCTGGCTTCCCCTaGGTGAAAGTTGCTGTTTTC +
Preference number: 2 (lower is better)
Translates to: EETQGKVKCAITFSSCRNCSGFP*VKVAVF
Trigger: GAAAACAGCAACTTTCACTCAGGGGAAGCCAGAACA...ATTTCTGCAAGAAGAAAAGGTAATGGCGCACTTTACCTTTCCTTGTGTTTCCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR-3UTR GCA 90 bp TACTTAGCAGTGATTCTCATTAGGCAAGGTGTGTGTGTGTGTATAATAGACTCTCACCACAGCCTTGGGTaGAAGCTTTCATATCTCAAC +
Preference number: 2 (lower is better)
Translates to: YLAVILIRQGVCVCIIDSHHSLG*KLSYLN
Trigger: GTTGAGATATGAAAGCTTGCACCCAAGGCTGTGGTG...AGAGTCTATTATACACACACACACACCTTGCCTAATGAGAATCACTGCTAAGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR-3UTR TCA 90 bp TTAATCCCAGCATTCAGCATAAACTCTGGTCCTGGAACTGCAGCACATGTTCTAGCAAAATCTTTATTCTaGAAACCTGTCAGGAAACAG +
Preference number: 2 (lower is better)
Translates to: LIPAFSINSGPGTAAHVLAKSLF*KPVRKQ
Trigger: CTGTTTCCTGACAGGTTTTCAGAATAAAGATTTTGC...TAGAACATGTGCTGCAGTTCCAGGACCAGAGTTTATGCTGAATGCTGGGATTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR CAA 90 bp ATCTCTAGAACCCAGCTTAGTCTGTCTTACACGGCTAATTTGTTTTaGTCTCAACTTCTCCTTGTTACTGATGATAAATGCGAAGAAGCC +
Preference number: 2 (lower is better)
Translates to: ISRTQLSLSYTANLF*SQLLLVTDDKCEEA
Trigger: GGCTTCTTCGCATTTATCATCAGTAACAAGGAGAAGTTGAGACAAAAACAAATTAGCCGTGTAAGACAGACTAAGCTGGGTTCTAGAGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR-3UTR CCA 90 bp CTAAATCCACAAAATCAATCCTCTTCCTTTGAGGTGAAAGCAAAGGGCAAAAGCTTCACCCATGACACTTaGTCACTATCCTTATTAAGC +
Preference number: 2 (lower is better)
Translates to: LNPQNQSSSFEVKAKGKSFTHDT*SLSLLS
Trigger: GCTTAATAAGGATAGTGACCAAGTGTCATGGGTGAA...GCTTTTGCCCTTTGCTTTCACCTCAAAGGAAGAGGATTGATTTTGTGGATTTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR CAA 90 bp AGTGAATACTCATTTAAAACAAAAAGTGATGTGGTGTTTATCTGGTaGAGGGTATCACAGTCTTCCTGTACCTCTGTCAATCTAGGTAGC +
Preference number: 2 (lower is better)
Translates to: SEYSFKTKSDVVFIW*RVSQSSCTSVNLGS
Trigger: GCTACCTAGATTGACAGAGGTACAGGAAGACTGTGATACCCTCAACCAGATAAACACCACATCACTTTTTGTTTTAAATGAGTATTCACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR-3UTR TCA 90 bp TACTTAGCAGTGATTCTCATTAGGCAAGGTGTGTGTGTGTGTATAATAGACTCTAACAGGTCCACCAGGTaGATGAATCTAAATCATTTA +
Preference number: 2 (lower is better)
Translates to: YLAVILIRQGVCVCIIDSNRSTR*MNLNHL
Trigger: TAAATGATTTAGATTCATTCACCTGGTGGACCTGTT...AGAGTCTATTATACACACACACACACCTTGCCTAATGAGAATCACTGCTAAGTA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR-3UTR GCA 90 bp TGTTTTTGTCTCAACTTCTCCTTGTTACTGATGATAAATGCGAAGAAGCCTTCGATTACCTTTTCTTCTTaGAGAAATCAGCTGGAGATG +
Preference number: 2 (lower is better)
Translates to: CFCLNFSLLLMINAKKPSITFSS*RNQLEM
Trigger: CATCTCCAGCTGATTTCTGCAAGAAGAAAAGGTAAT...CGAAGGCTTCTTCGCATTTATCATCAGTAACAAGGAGAAGTTGAGACAAAAACA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR-3UTR CCA 90 bp TACTTAGCAGTGATTCTCATTAGGCAAGGTGTGTGTGTGTGTATAATAGACTCTGCCTTTTTCTACTGCTaGAGATCAATTATACCTTTA +
Preference number: 2 (lower is better)
Translates to: YLAVILIRQGVCVCIIDSAFFYC*RSIIPL
Trigger: TAAAGGTATAATTGATCTCCAGCAGTAGAAAAAGGC...AGAGTCTATTATACACACACACACACCTTGCCTAATGAGAATCACTGCTAAGTA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR CCA 72 bp CTCCCCTGGAACTGGAGATGGTTGTTCGCTGCGGTGTaGGAACACCCACAGGCCTCTGGAGCAACAGTGCTC +
Preference number: 3 (lower is better)
Translates to: LPWNWRWLFAAV*EHPQASGATVL
Trigger: GAGCACTGTTGCTCCAGAGGCCTGTGGGTGTTCCCACACCGCAGCGAACAACCATCTCCAGTTCCAGGGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR GCA 72 bp CATCAGACTCCCCTGGAACTGGAGATGGTTGTTCGCTaGGGTGTGGGAACACCCACAGGCCTCTGGAGCAAC +
Preference number: 3 (lower is better)
Translates to: HQTPLELEMVVR*GVGTPTGLWSN
Trigger: GTTGCTCCAGAGGCCTGTGGGTGTTCCCACACCGCAGCGAACAACCATCTCCAGTTCCAGGGGAGTCTGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR TCA 72 bp CCCACAGGCCTCTGGAGCAACAGTGCTCTTCACTGCTaGGCCATTGCTCTATGCCCTAGCAGCATTTCTCAG +
Preference number: 3 (lower is better)
Translates to: PTGLWSNSALHC*AIALCPSSISQ
Trigger: CTGAGAAATGCTGCTAGGGCATAGAGCAATGGCTCAGCAGTGAAGAGCACTGTTGCTCCAGAGGCCTGTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR GCA 72 bp AAACAAAGAAATCACCCATCTTGCCACATGCGGTGGTaGCTGCCTTCAGTCCCTTCCCAGTCCTCAGGAGAC +
Preference number: 3 (lower is better)
Translates to: KQRNHPSCHMRW*LPSVPSQSSGD
Trigger: GTCTCCTGAGGACTGGGAAGGGACTGAAGGCAGGCACCACCGCATGTGGCAAGATGGGTGATTTCTTTGTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR CCA 72 bp GCCCTGCCTGTCCTGGAACTTGCTCTGGAGACTAGATaGGCATCAAACTCAGATTCACCCGCTTCTGCCTTT +
Preference number: 3 (lower is better)
Translates to: ALPVLELALETR*ASNSDSPASAF
Trigger: AAAGGCAGAAGCGGGTGAATCTGAGTTTGATGCCCATCTAGTCTCCAGAGCAAGTTCCAGGACAGGCAGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR CCA 72 bp GAAAAACAAAGAAATCACCCATCTTGCCACATGCGGTaGTGCCTGCCTTCAGTCCCTTCCCAGTCCTCAGGA +
Preference number: 3 (lower is better)
Translates to: EKQRNHPSCHMR*CLPSVPSQSSG
Trigger: TCCTGAGGACTGGGAAGGGACTGAAGGCAGGCACCACCGCATGTGGCAAGATGGGTGATTTCTTTGTTTTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR GCA 72 bp GTGTTTTGCCTGTATGTGTCTGCATCATGTGTGCATTaGTCAAGAAAGCCAGAAGAGGGCATCAGACTCCCC +
Preference number: 3 (lower is better)
Translates to: VFCLYVSASCVH*SRKPEEGIRLP
Trigger: GGGGAGTCTGATGCCCTCTTCTGGCTTTCTTGAGCAATGCACACATGATGCAGACACATACAGGCAAAACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR TCA 72 bp CAGCTGGAGATGACTAATGTTCTGGCTTCCCCTGAGTaGAAGTTGCTGTTTTCTCCCTTTCTCCTCGATGTG +
Preference number: 3 (lower is better)
Translates to: QLEMTNVLASPE*KLLFSPFLLDV
Trigger: CACATCGAGGAGAAAGGGAGAAAACAGCAACTTTCACTCAGGGGAAGCCAGAACATTAGTCATCTCCAGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR-3UTR CAA 90 bp CTAAATCCACAAAATCAATCCTCTTCCTTTGAGGTGAAAGCAAAGGGCAAAAGCCACTCCACCACAGCCTaGGGTGCAAGCTTTCATATC +
Preference number: 3 (lower is better)
Translates to: LNPQNQSSSFEVKAKGKSHSTTA*GASFHI
Trigger: GATATGAAAGCTTGCACCCAAGGCTGTGGTGGAGTG...GCTTTTGCCCTTTGCTTTCACCTCAAAGGAAGAGGATTGATTTTGTGGATTTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR GCA 72 bp TATAGGTGTTTTGCCTGTATGTGTCTGCATCATGTGTaGATTGCTCAAGAAAGCCAGAAGAGGGCATCAGAC +
Preference number: 3 (lower is better)
Translates to: YRCFACMCLHHV*IAQESQKRASD
Trigger: GTCTGATGCCCTCTTCTGGCTTTCTTGAGCAATGCACACATGATGCAGACACATACAGGCAAAACACCTATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR GCA 72 bp CAAAATAAATCTGAAAAACAAAGAAATCACCCATCTTaGCACATGCGGTGGTGCCTGCCTTCAGTCCCTTCC +
Preference number: 3 (lower is better)
Translates to: QNKSEKQRNHPS*HMRWCLPSVPS
Trigger: GGAAGGGACTGAAGGCAGGCACCACCGCATGTGGCAAGATGGGTGATTTCTTTGTTTTTCAGATTTATTTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR GCA 72 bp GCAAATATGTCAGATAGCTTCACAGGAGCAATGCTGTaGCTTTCGAGGGCATGGTTTTGGTTTCTAGTACTC +
Preference number: 3 (lower is better)
Translates to: ANMSDSFTGAML*LSRAWFWFLVL
Trigger: GAGTACTAGAAACCAAAACCATGCCCTCGAAAGGCACAGCATTGCTCCTGTGAAGCTATCTGACATATTTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR TCA 72 bp CCATTACCTTTTCTTCTTGCAGAAATCAGCTGGAGATaGCTAATGTTCTGGCTTCCCCTGAGTGAAAGTTGC +
Preference number: 3 (lower is better)
Translates to: PLPFLLAEISWR*LMFWLPLSESC
Trigger: GCAACTTTCACTCAGGGGAAGCCAGAACATTAGTCATCTCCAGCTGATTTCTGCAAGAAGAAAAGGTAATGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR GCA 72 bp AATCCCAGCATTCAGCATAAACTCTGGTCCTGGAACTaGAGCACATGTTCTAATCTGCTAAAGCCATCTCTA +
Preference number: 3 (lower is better)
Translates to: NPSIQHKLWSWN*STCSNLLKPSL
Trigger: TAGAGATGGCTTTAGCAGATTAGAACATGTGCTGCAGTTCCAGGACCAGAGTTTATGCTGAATGCTGGGATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR CCA 72 bp GACTTTAATCCCAGCATTCAGCATAAACTCTGGTCCTaGAACTGCAGCACATGTTCTAATCTGCTAAAGCCA +
Preference number: 3 (lower is better)
Translates to: DFNPSIQHKLWS*NCSTCSNLLKP
Trigger: TGGCTTTAGCAGATTAGAACATGTGCTGCAGTTCCAGGACCAGAGTTTATGCTGAATGCTGGGATTAAAGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR-3UTR CAA 90 bp TTAATCCCAGCATTCAGCATAAACTCTGGTCCTGGAACTGCAGCACATGTTCTAACGGCTAATTTGTTTTaGTCTCAACTTCTCCTTGTT +
Preference number: 3 (lower is better)
Translates to: LIPAFSINSGPGTAAHVLTANLF*SQLLLV
Trigger: AACAAGGAGAAGTTGAGACAAAAACAAATTAGCCGT...TAGAACATGTGCTGCAGTTCCAGGACCAGAGTTTATGCTGAATGCTGGGATTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR TCA 72 bp AAATGCAGGGCTCTTGCACTTAAACTTCTGAGAAACTaGACTATAAACATGTCTCGTGATACCCTAAAGCCT +
Preference number: 3 (lower is better)
Translates to: KCRALALKLLRN*TINMSRDTLKP
Trigger: AGGCTTTAGGGTATCACGAGACATGTTTATAGTTCAGTTTCTCAGAAGTTTAAGTGCAAGAGCCCTGCATTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR-3UTR CAA 90 bp CTAAATCCACAAAATCAATCCTCTTCCTTTGAGGTGAAAGCAAAGGGCAAAAGCTCTTACACGGCTAATTaGTTTTTGTCTCAACTTCTC +
Preference number: 3 (lower is better)
Translates to: LNPQNQSSSFEVKAKGKSSYTAN*FLSQLL
Trigger: GAGAAGTTGAGACAAAAACAAATTAGCCGTGTAAGA...GCTTTTGCCCTTTGCTTTCACCTCAAAGGAAGAGGATTGATTTTGTGGATTTAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR CCA 72 bp TACTCATTTAAAACAAAAAGTGATGTGGTGTTTATCTaGTTGAGGGTATCACAGTCTTCCTGTACCTCTGTC +
Preference number: 3 (lower is better)
Translates to: YSFKTKSDVVFI*LRVSQSSCTSV
Trigger: GACAGAGGTACAGGAAGACTGTGATACCCTCAACCAGATAAACACCACATCACTTTTTGTTTTAAATGAGTA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR CAA 72 bp GAAGAGGGCATCAGACTCCCCTGGAACTGGAGATGGTaGTTCGCTGCGGTGTGGGAACACCCACAGGCCTCT +
Preference number: 4 (lower is better)
Translates to: EEGIRLPWNWRW*FAAVWEHPQAS
Trigger: AGAGGCCTGTGGGTGTTCCCACACCGCAGCGAACAACCATCTCCAGTTCCAGGGGAGTCTGATGCCCTCTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR CAA 72 bp GCCTCTGGAGCAACAGTGCTCTTCACTGCTGAGCCATaGCTCTATGCCCTAGCAGCATTTCTCAGTGCTGGG +
Preference number: 4 (lower is better)
Translates to: ASGATVLFTAEP*LYALAAFLSAG
Trigger: CCCAGCACTGAGAAATGCTGCTAGGGCATAGAGCAATGGCTCAGCAGTGAAGAGCACTGTTGCTCCAGAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
CDS-3UTR TCA 90 bp TTTCTCCCTTTCTCCTCGATGTGGAATTCAGCCAGGACACAGTGCGCACTAAGCTGTACATCCCCAGGGTaGAGGGAACCTTCTGTTGAT +
Preference number: 4 (lower is better)
Translates to: FLPFSSMWNSARTQCALSCTSPG*REPSVD
Trigger: ATCAACAGAAGGTTCCCTTCACCCTGGGGATGTACA...GCTTAGTGCGCACTGTGTCCTGGCTGAATTCCACATCGAGGAGAAAGGGAGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
CDS-3UTR GCA 90 bp CTTCACAGGAGCAATGCTGTGCCTTTCGAGGGCATGGTTTTGGTTTCTAGTACTACCACACGGGGAGGCTaGAGCATCTTCATGTGCAGT +
Preference number: 4 (lower is better)
Translates to: LHRSNAVPFEGMVLVSSTTTRGG*SIFMCS
Trigger: ACTGCACATGAAGATGCTGCAGCCTCCCCGTGTGGT...AGTACTAGAAACCAAAACCATGCCCTCGAAAGGCACAGCATTGCTCCTGTGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
CDS-3UTR CCA 90 bp GTAGCACACGACTTTAATCCCAGCATTCAGCATAAACTCTGGTCCTGGAACTGCCCATGCACACATCCATaGGCACAAGTACAGACGCCT +
Preference number: 4 (lower is better)
Translates to: VAHDFNPSIQHKLWSWNCPCTHP*AQVQTP
Trigger: AGGCGTCTGTACTTGTGCCCATGGATGTGTGCATGG...GCAGTTCCAGGACCAGAGTTTATGCTGAATGCTGGGATTAAAGTCGTGTGCTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR CAA 72 bp GGTGTTTTGCCTGTATGTGTCTGCATCATGTGTGCATaGCTCAAGAAAGCCAGAAGAGGGCATCAGACTCCC +
Preference number: 4 (lower is better)
Translates to: GVLPVCVCIMCA*LKKARRGHQTP
Trigger: GGGAGTCTGATGCCCTCTTCTGGCTTTCTTGAGCAATGCACACATGATGCAGACACATACAGGCAAAACACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
CDS-3UTR TCA 90 bp GTGTTTTGCCTGTATGTGTCTGCATCATGTGTGCATTGCTCAAGAAAGCCAGAAGAGATAGCGGAATTCTaGGAAGGAGCCACTTCCATG +
Preference number: 4 (lower is better)
Translates to: VFCLYVSASCVHCSRKPEEIAEF*EGATSM
Trigger: CATGGAAGTGGCTCCTTCTCAGAATTCCGCTATCTC...TTCTGGCTTTCTTGAGCAATGCACACATGATGCAGACACATACAGGCAAAACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
CDS-3UTR GCA 90 bp TGTTTTTGTCTCAACTTCTCCTTGTTACTGATGATAAATGCGAAGAAGCCTTCGCTCCGGAAACGACCATaGACACATCCATGGGCACAA +
Preference number: 4 (lower is better)
Translates to: CFCLNFSLLLMINAKKPSLRKRP*THPWAQ
Trigger: TTGTGCCCATGGATGTGTGCATGGTCGTTTCCGGAG...CGAAGGCTTCTTCGCATTTATCATCAGTAACAAGGAGAAGTTGAGACAAAAACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR CAA 72 bp CACAGGAGCAATGCTGTGCCTTTCGAGGGCATGGTTTaGGTTTCTAGTACTCACATAATAGTGGTTCATCAT +
Preference number: 4 (lower is better)
Translates to: HRSNAVPFEGMV*VSSTHIIVVHH
Trigger: ATGATGAACCACTATTATGTGAGTACTAGAAACCAAAACCATGCCCTCGAAAGGCACAGCATTGCTCCTGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
CDS-3UTR CCA 90 bp CTAAATCCACAAAATCAATCCTCTTCCTTTGAGGTGAAAGCAAAGGGCAAAAGCGGTCCGGAGTTTATTTaGATATGTACATCCCCAGGG +
Preference number: 4 (lower is better)
Translates to: LNPQNQSSSFEVKAKGKSGPEFI*ICTSPG
Trigger: CCCTGGGGATGTACATATCCAAATAAACTCCGGACC...GCTTTTGCCCTTTGCTTTCACCTCAAAGGAAGAGGATTGATTTTGTGGATTTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
CDS-3UTR TCA 90 bp CTAAATCCACAAAATCAATCCTCTTCCTTTGAGGTGAAAGCAAAGGGCAAAAGCTCACAGAATATATGCTaGCAAAAGAGAAGAACTGGC +
Preference number: 4 (lower is better)
Translates to: LNPQNQSSSFEVKAKGKSSQNIC*QKRRTG
Trigger: GCCAGTTCTTCTCTTTTGTCAGCATATATTCTGTGA...GCTTTTGCCCTTTGCTTTCACCTCAAAGGAAGAGGATTGATTTTGTGGATTTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR CAA 72 bp CTTACACGGCTAATTTGTTTTTGTCTCAACTTCTCCTaGTTACTGATGATAAATGCGAAGAAGCCTTCGCAG +
Preference number: 4 (lower is better)
Translates to: LTRLICFCLNFS*LLMINAKKPSQ
Trigger: CTGCGAAGGCTTCTTCGCATTTATCATCAGTAACAAGGAGAAGTTGAGACAAAAACAAATTAGCCGTGTAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR CAA 72 bp ACCCAGCTTAGTCTGTCTTACACGGCTAATTTGTTTTaGTCTCAACTTCTCCTTGTTACTGATGATAAATGC +
Preference number: 4 (lower is better)
Translates to: TQLSLSYTANLF*SQLLLVTDDKC
Trigger: GCATTTATCATCAGTAACAAGGAGAAGTTGAGACAAAAACAAATTAGCCGTGTAAGACAGACTAAGCTGGGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR CAA 72 bp TCTAGAACCCAGCTTAGTCTGTCTTACACGGCTAATTaGTTTTTGTCTCAACTTCTCCTTGTTACTGATGAT +
Preference number: 4 (lower is better)
Translates to: SRTQLSLSYTAN*FLSQLLLVTDD
Trigger: ATCATCAGTAACAAGGAGAAGTTGAGACAAAAACAAATTAGCCGTGTAAGACAGACTAAGCTGGGTTCTAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
3UTR CAA 72 bp TCATTTAAAACAAAAAGTGATGTGGTGTTTATCTGGTaGAGGGTATCACAGTCTTCCTGTACCTCTGTCAAT +
Preference number: 4 (lower is better)
Translates to: SFKTKSDVVFIW*RVSQSSCTSVN
Trigger: ATTGACAGAGGTACAGGAAGACTGTGATACCCTCAACCAGATAAACACCACATCACTTTTTGTTTTAAATGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
CDS-3UTR CAA 90 bp CCAGCATTCAGCATAAACTCTGGTCCTGGAACTGCAGCACATGTTCTAATCTGCTGGTCCGGAGTTTATTaGGATATGTACATCCCCAGG +
Preference number: 5 (lower is better)
Translates to: PAFSINSGPGTAAHVLICWSGVY*DMYIPR
Trigger: CCTGGGGATGTACATATCCAAATAAACTCCGGACCA...GCAGATTAGAACATGTGCTGCAGTTCCAGGACCAGAGTTTATGCTGAATGCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
CDS-3UTR CAA 90 bp GTAAAGTGCGCCATTACCTTTTCTTCTTGCAGAAATCAGCTGGAGATGACTAATGAAGGGAACCTTCTGTaGATCTTGAATGACCACACG +
Preference number: 5 (lower is better)
Translates to: VKCAITFSSCRNQLEMTNEGNLL*ILNDHT
Trigger: CGTGTGGTCATTCAAGATCAACAGAAGGTTCCCTTC...ATTAGTCATCTCCAGCTGATTTCTGCAAGAAGAAAAGGTAATGGCGCACTTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
CDS CAA 72 bp GTACATCCCCAGGGTGAAGGGAACCTTCTGTTGATCTaGAATGACCACACGGGGAGGCTGCAGCATCTTCAT +
Preference number: 6 (lower is better)
Translates to: VHPQGEGNLLLI*NDHTGRLQHLH
Trigger: ATGAAGATGCTGCAGCCTCCCCGTGTGGTCATTCAAGATCAACAGAAGGTTCCCTTCACCCTGGGGATGTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
CDS CAA 72 bp GGATATGTACATCCCCAGGGTGAAGGGAACCTTCTGTaGATCTTGAATGACCACACGGGGAGGCTGCAGCAT +
Preference number: 6 (lower is better)
Translates to: GYVHPQGEGNLL*ILNDHTGRLQH
Trigger: ATGCTGCAGCCTCCCCGTGTGGTCATTCAAGATCAACAGAAGGTTCCCTTCACCCTGGGGATGTACATATCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
CDS CAA 90 bp TTTGGATATGTACATCCCCAGGGTGAAGGGAACCTTCTGTTGATCTaGAATGACCACACGGGGAGGCTGCAGCATCTTCATGTGCAGTGC +
Preference number: 6 (lower is better)
Translates to: FGYVHPQGEGNLLLI*NDHTGRLQHLHVQC
Trigger: GCACTGCACATGAAGATGCTGCAGCCTCCCCGTGTGGTCATTCAAGATCAACAGAAGGTTCCCTTCACCCTGGGGATGTACATATCCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7
CDS CAA 90 bp AGTTTATTTGGATATGTACATCCCCAGGGTGAAGGGAACCTTCTGTaGATCTTGAATGACCACACGGGGAGGCTGCAGCATCTTCATGTG +
Preference number: 6 (lower is better)
Translates to: SLFGYVHPQGEGNLL*ILNDHTGRLQHLHV
Trigger: CACATGAAGATGCTGCAGCCTCCCCGTGTGGTCATTCAAGATCAACAGAAGGTTCCCTTCACCCTGGGGATGTACATATCCAAATAAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020827.7