Pregenerated sensors for RNF7 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000051234

Ensembl transcript IDs: ENSMUST00000057500.6

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR TCA 90 bp	GGCCTCGCTTGCCTCTCTCCCAACACAAAAAGGATTAGGAGGAGTCGGCTTTTCAACAATGTTCTTCTGTaGACACAATGTTCCCACAGT	+
Preference number: 2 (lower is better) Translates to: GLACLSPNTKRIRRSRLFNNVLL*TQCSHS Trigger: ACTGTGGGAACATTGTGTTCACAGAAGAACATTGTT...GAAAAGCCGACTCCTCCTAATCCTTTTTGTGTTGGGAGAGAGGCAAGCGAGGCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057500.6
3UTR CAA 90 bp	TACAACCTTCGCAAAAACAGAAAACAGTTCTTTAGAACTAAGTGGTaGAACAATCCAGGCTTCCTGGCCAAGTCAAAGATGGAGAAGTCA	+
Preference number: 2 (lower is better) Translates to: YNLRKNRKQFFRTKW*NNPGFLAKSKMEKS Trigger: TGACTTCTCCATCTTTGACTTGGCCAGGAAGCCTGGATTGTTCAACCACTTAGTTCTAAAGAACTGTTTTCTGTTTTTGCGAAGGTTGTA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057500.6
3UTR TCA 72 bp	AAACTAAACAGACAAATTAATAAAGCAAGCCTTTGGTaGGTCTCAAAGGCGCACAGCATCCTCTCTCTCTCA	+
Preference number: 3 (lower is better) Translates to: KLNRQINKASLW*VSKAHSILSLS Trigger: TGAGAGAGAGAGGATGCTGTGCGCCTTTGAGACTCACCAAAGGCTTGCTTTATTAATTTGTCTGTTTAGTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057500.6
3UTR TCA 72 bp	GCAAAAACAGAAAACAGTTCTTTAGAACTAAGTGGTTaGACAATCCAGGCTTCCTGGCCAAGTCAAAGATGG	+
Preference number: 3 (lower is better) Translates to: AKTENSSLELSG*TIQASWPSQRW Trigger: CCATCTTTGACTTGGCCAGGAAGCCTGGATTGTTCAACCACTTAGTTCTAAAGAACTGTTTTCTGTTTTTGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057500.6
3UTR CCA 72 bp	CAATGTTCTTCTGTGAACACAATGTTCCCACAGTCGTaGGTACAGATAAACAAAGATCATTTTCTGGTGTTC	+
Preference number: 3 (lower is better) Translates to: QCSSVNTMFPQS*VQINKDHFLVF Trigger: GAACACCAGAAAATGATCTTTGTTTATCTGTACCCACGACTGTGGGAACATTGTGTTCACAGAAGAACATTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057500.6
CDS-3UTR CCA 90 bp	TCAAGGATGAATCCCCTGCAGTGTTTAGTCTTTGTCCAGGGTCAGCAACCACACCCTGGACCCTGCAGATaGCACAGGTATCGCACTCAA	+
Preference number: 4 (lower is better) Translates to: SRMNPLQCLVFVQGQQPHPGPCR*HRYRTQ Trigger: TTGAGTGCGATACCTGTGCCATCTGCAGGGTCCAGG...GTGTGGTTGCTGACCCTGGACAAAGACTAAACACTGCAGGGGATTCATCCTTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057500.6
3UTR CAA 72 bp	CGCAAAAACAGAAAACAGTTCTTTAGAACTAAGTGGTaGAACAATCCAGGCTTCCTGGCCAAGTCAAAGATG	+
Preference number: 4 (lower is better) Translates to: RKNRKQFFRTKW*NNPGFLAKSKM Trigger: CATCTTTGACTTGGCCAGGAAGCCTGGATTGTTCAACCACTTAGTTCTAAAGAACTGTTTTCTGTTTTTGCG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057500.6