Pregenerated sensors for RNF5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000015478Ensembl transcript IDs: ENSMUST00000015622.8
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CACAGCAGCAGGCACTCCCATCTTAAGCAGACTGGTCACTCCTCGCCATGCCCTTCCTCTAGCTGGAGGTaGGCAGGGAGGAGACAGAGC | + |
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Preference number: 2 (lower is better) Translates to: HSSRHSHLKQTGHSSPCPSSSWR*AGRRQS Trigger: GCTCTGTCTCCTCCCTGCCCACCTCCAGCTAGAGGA...AGGGCATGGCGAGGAGTGACCAGTCTGCTTAAGATGGGAGTGCCTGCTGCTGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015622.8 |
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| 3UTR-3UTR TCA 90 bp | CCTGTCTGTCTGTCCGTCCTCCAGGCTGACAGTGTCTGTGCTACTGGGCCAGCACAGGACTCCCAATACTaGTTCTCCTCTAGCTGGAGG | + |
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Preference number: 2 (lower is better) Translates to: PVCLSVLQADSVCATGPAQDSQY*FSSSWR Trigger: CCTCCAGCTAGAGGAGAATCAGTATTGGGAGTCCTG...TGCTGGCCCAGTAGCACAGACACTGTCAGCCTGGAGGACGGACAGACAGACAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015622.8 |
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| 3UTR-3UTR CCA 90 bp | GCAGCAGGCACTCCCATCTTAAGCAGACTGGTCACTCCTCGCCATGCCCTCCCACTCAGCAGACAGAGATaGGTCATGGAAGTAAGGGGG | + |
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Preference number: 2 (lower is better) Translates to: AAGTPILSRLVTPRHALPLSRQR*VMEVRG Trigger: CCCCCTTACTTCCATGACCCATCTCTGTCTGCTGAG...TGGGAGGGCATGGCGAGGAGTGACCAGTCTGCTTAAGATGGGAGTGCCTGCTGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015622.8 |
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| 3UTR-3UTR CCA 90 bp | ACTCCCATCTTAAGCAGACTGGTCACTCCTCGCCATGCCCTCCCAAGAGAGAGGATGGAAGTAAGGGGGTaGTCCAAAAGCAAGGAAAGG | + |
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Preference number: 2 (lower is better) Translates to: TPILSRLVTPRHALPRERMEVRG*SKSKER Trigger: CCTTTCCTTGCTTTTGGACCACCCCCTTACTTCCAT...CCTCTCTCTTGGGAGGGCATGGCGAGGAGTGACCAGTCTGCTTAAGATGGGAGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015622.8 |
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| 3UTR TCA 72 bp | GAACTGGACACCTGTCTGTCTGTCCGTCCTCCAGGCTaGCAGTGTCTGTGCTACTGGGCCAGCAGTACACAG | + |
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Preference number: 3 (lower is better) Translates to: ELDTCLSVRPPG*QCLCYWASSTQ Trigger: CTGTGTACTGCTGGCCCAGTAGCACAGACACTGTCAGCCTGGAGGACGGACAGACAGACAGGTGTCCAGTTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015622.8 |
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| CDS-3UTR CCA 90 bp | GGTAGAACTGGACACCTGTCTGTCTGTCCGTCCTCCAGGCTGACAGTGTCTGTGGCATTCTTGCCGGTCTaGCCGGGTCTCCAGCCACTG | + |
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Preference number: 4 (lower is better) Translates to: GRTGHLSVCPSSRLTVSVAFLPV*PGLQPL Trigger: CAGTGGCTGGAGACCCGGCCAGACCGGCAAGAATGC...CACAGACACTGTCAGCCTGGAGGACGGACAGACAGACAGGTGTCCAGTTCTACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015622.8 |
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| CDS-3UTR GCA 90 bp | ACTCCCATCTTAAGCAGACTGGTCACTCCTCGCCATGCCCTCCCAAGAGAGAGGTCCCAGATCCACACCTaGGCCTCTTCTGAAAGGTTC | + |
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Preference number: 4 (lower is better) Translates to: TPILSRLVTPRHALPRERSQIHT*ASSERF Trigger: GAACCTTTCAGAAGAGGCGCAGGTGTGGATCTGGGA...CCTCTCTCTTGGGAGGGCATGGCGAGGAGTGACCAGTCTGCTTAAGATGGGAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015622.8 |
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| CDS-3UTR CCA 90 bp | AAGCAAAGGATTGGTAGAACTGGACACCTGTCTGTCTGTCCGTCCTCCAGGCTGGCCCTGAGGGCGGGGTaGAGTTTTCAATCTGGGATC | + |
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Preference number: 4 (lower is better) Translates to: KQRIGRTGHLSVCPSSRLALRAG*SFQSGI Trigger: GATCCCAGATTGAAAACTCCACCCCGCCCTCAGGGC...CAGCCTGGAGGACGGACAGACAGACAGGTGTCCAGTTCTACCAATCCTTTGCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015622.8 |
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| CDS-3UTR TCA 90 bp | AAGCAAAGGATTGGTAGAACTGGACACCTGTCTGTCTGTCCGTCCTCCAGGCTGGTCTCCAGCCACTGGTaGAGACAGGGCCAACAATAC | + |
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Preference number: 4 (lower is better) Translates to: KQRIGRTGHLSVCPSSRLVSSHW*RQGQQY Trigger: GTATTGTTGGCCCTGTCTTCACCAGTGGCTGGAGAC...CAGCCTGGAGGACGGACAGACAGACAGGTGTCCAGTTCTACCAATCCTTTGCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015622.8 |
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| CDS-3UTR CCA 90 bp | GGAAGTAAGGGGGTGGTCCAAAAGCAAGGAAAGGCCAGCACAGGACTCCCAATAACACCAAAGGAGAAGTaGAATCCCCCGGCATCACCA | + |
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Preference number: 4 (lower is better) Translates to: GSKGVVQKQGKASTGLPITPKEK*NPPASP Trigger: TGGTGATGCCGGGGGATTCCACTTCTCCTTTGGTGT...TATTGGGAGTCCTGTGCTGGCCTTTCCTTGCTTTTGGACCACCCCCTTACTTCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000015622.8 |
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