Pregenerated sensors for RNF4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029110Ensembl transcript IDs: ENSMUST00000030992.13, ENSMUST00000182047.2, ENSMUST00000182709.8
Found 88 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCCTACTCTGGGCTCAGACCACCCAAAGGGGCAGTGATGCTGAGCTaGTCTAGGAGGATCCCTGGACCGTGCTCCATAGCATCAAACGAG | + |
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Preference number: 1 (lower is better) Translates to: PYSGLRPPKGAVMLS*SRRIPGPCSIASNE Trigger: CTCGTTTGATGCTATGGAGCACGGTCCAGGGATCCTCCTAGATCAGCTCAGCATCACTGCCCCTTTGGGTGGTCTGAGCCCAGAGTAGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR CCA 90 bp | CACCTTTTCGTGGCTTTTCGTGGGCAGCTCATGCACTGGTATCCTTaGGCTATTTGGGCTGTCTGGCCAGGTCACTGTCTGGCAGGCAGA | + |
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Preference number: 1 (lower is better) Translates to: HLFVAFRGQLMHWYP*AIWAVWPGHCLAGR Trigger: TCTGCCTGCCAGACAGTGACCTGGCCAGACAGCCCAAATAGCCCAAGGATACCAGTGCATGAGCTGCCCACGAAAAGCCACGAAAAGGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR GCA 90 bp | TACAGCTTCCAGATTGCTGAAGAGCAGGTGAAGAACGGGTTTTATTaGACTTTCTCATTCTTAGGGAACAGGATCGTCCTGCAGAGTCAC | + |
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Preference number: 1 (lower is better) Translates to: YSFQIAEEQVKNGFY*TFSFLGNRIVLQSH Trigger: GTGACTCTGCAGGACGATCCTGTTCCCTAAGAATGAGAAAGTGCAATAAAACCCGTTCTTCACCTGCTCTTCAGCAATCTGGAAGCTGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR GCA 90 bp | TTCTCATTCTTAGGGAACAGGATCGTCCTGCAGAGTCACTGGATTTaGAGAAAACACTGCACACCAATGATGAGTTTCAGGCGGAATCAT | + |
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Preference number: 1 (lower is better) Translates to: FSFLGNRIVLQSHWI*RKHCTPMMSFRRNH Trigger: ATGATTCCGCCTGAAACTCATCATTGGTGTGCAGTGTTTTCTGCAAATCCAGTGACTCTGCAGGACGATCCTGTTCCCTAAGAATGAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR-3UTR TCA 90 bp | TGGAGGTGGAGGCAGGCTGGCATTCAAGGCCTATCCTCTACAAGCCGCCCTGTGGGCAGAACAGCTAACTaGCAGGTGCCTTGGGAAGGT | + |
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Preference number: 2 (lower is better) Translates to: WRWRQAGIQGLSSTSRPVGRTAN*QVPWEG Trigger: ACCTTCCCAAGGCACCTGTCAGTTAGCTGTTCTGCC...CACAGGGCGGCTTGTAGAGGATAGGCCTTGAATGCCAGCCTGCCTCCACCTCCA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR-3UTR TCA 90 bp | TGGAGGTGGAGGCAGGCTGGCATTCAAGGCCTATCCTCTACAAGCCGCCCTGTGCCTGAGAACAGCTGGTaGACAGACATGGGGTGGGAT | + |
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Preference number: 2 (lower is better) Translates to: WRWRQAGIQGLSSTSRPVPENSW*TDMGWD Trigger: ATCCCACCCCATGTCTGTTCACCAGCTGTTCTCAGG...CACAGGGCGGCTTGTAGAGGATAGGCCTTGAATGCCAGCCTGCCTCCACCTCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR CAA 90 bp | CCACCTTTTCGTGGCTTTTCGTGGGCAGCTCATGCACTGGTATCCTaGGGCTATTTGGGCTGTCTGGCCAGGTCACTGTCTGGCAGGCAG | + |
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Preference number: 2 (lower is better) Translates to: PPFRGFSWAAHALVS*GYLGCLARSLSGRQ Trigger: CTGCCTGCCAGACAGTGACCTGGCCAGACAGCCCAAATAGCCCAAGGATACCAGTGCATGAGCTGCCCACGAAAAGCCACGAAAAGGTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR-3UTR CCA 90 bp | TGGAGGTGGAGGCAGGCTGGCATTCAAGGCCTATCCTCTACAAGCCGCCCTGTGGTTATGTGGTCCCACTaGAAGAGGCACCATGCTTTG | + |
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Preference number: 2 (lower is better) Translates to: WRWRQAGIQGLSSTSRPVVMWSH*KRHHAL Trigger: CAAAGCATGGTGCCTCTTCCAGTGGGACCACATAAC...CACAGGGCGGCTTGTAGAGGATAGGCCTTGAATGCCAGCCTGCCTCCACCTCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR-3UTR TCA 90 bp | CTGAGAACAGCTGGTGAACAGACATGGGGTGGGATGAGCACTGCTCCCATAGGCAAGAGGCTGGAGCCATaGTGCTCAACCCCAATATGC | + |
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Preference number: 2 (lower is better) Translates to: LRTAGEQTWGGMSTAPIGKRLEP*CSTPIC Trigger: GCATATTGGGGTTGAGCATCATGGCTCCAGCCTCTT...GCCTATGGGAGCAGTGCTCATCCCACCCCATGTCTGTTCACCAGCTGTTCTCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR-3UTR GCA 90 bp | TGTCTCCGTGAGCACCAGAGTCTCCCACACATATACGGTGGAGCAGACATTGTTGCCTTGGGAAGGTTCTaGACACACAAGAGCTGGGGC | + |
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Preference number: 2 (lower is better) Translates to: CLREHQSLPHIYGGADIVALGRF*THKSWG Trigger: GCCCCAGCTCTTGTGTGTGCAGAACCTTCCCAAGGC...AACAATGTCTGCTCCACCGTATATGTGTGGGAGACTCTGGTGCTCACGGAGACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR-3UTR CCA 90 bp | CTGAGAACAGCTGGTGAACAGACATGGGGTGGGATGAGCACTGCTCCCATAGGCTGCACACACAAGAGCTaGGGCAAACTTTCCCAACAG | + |
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Preference number: 2 (lower is better) Translates to: LRTAGEQTWGGMSTAPIGCTHKS*GKLSQQ Trigger: CTGTTGGGAAAGTTTGCCCCAGCTCTTGTGTGTGCA...GCCTATGGGAGCAGTGCTCATCCCACCCCATGTCTGTTCACCAGCTGTTCTCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR-3UTR CCA 90 bp | CTGAGAACAGCTGGTGAACAGACATGGGGTGGGATGAGCACTGCTCCCATAGGCTTTCGTGGCTTTTCGTaGGCAGCTCATGCACTGGTA | + |
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Preference number: 2 (lower is better) Translates to: LRTAGEQTWGGMSTAPIGFRGFS*AAHALV Trigger: TACCAGTGCATGAGCTGCCCACGAAAAGCCACGAAA...GCCTATGGGAGCAGTGCTCATCCCACCCCATGTCTGTTCACCAGCTGTTCTCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR-3UTR CCA 90 bp | TGGAGGTGGAGGCAGGCTGGCATTCAAGGCCTATCCTCTACAAGCCGCCCTGTGCCCACACATATACGGTaGAGCAGACATTGTTATGTG | + |
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Preference number: 2 (lower is better) Translates to: WRWRQAGIQGLSSTSRPVPTHIR*SRHCYV Trigger: CACATAACAATGTCTGCTCCACCGTATATGTGTGGG...CACAGGGCGGCTTGTAGAGGATAGGCCTTGAATGCCAGCCTGCCTCCACCTCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR-3UTR TCA 90 bp | CCCACAAAGAAATCAATGGCTGTGACATCCAAGGGGGAGAGGAGAGCACACACAGGCAGAACAGCTAACTaGCAGGTGCCTTGGGAAGGT | + |
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Preference number: 2 (lower is better) Translates to: PTKKSMAVTSKGERRAHTGRTAN*QVPWEG Trigger: ACCTTCCCAAGGCACCTGTCAGTTAGCTGTTCTGCC...TGTGTGTGCTCTCCTCTCCCCCTTGGATGTCACAGCCATTGATTTCTTTGTGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR-3UTR TCA 90 bp | CTATCTATTCAAGGGGTGTGGGAAAAGCTAGGGCAGTGGAGGTTGAGTAGGGCACCTGAGAACAGCTGGTaGACAGACATGGGGTGGGAT | + |
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Preference number: 2 (lower is better) Translates to: LSIQGVWEKLGQWRLSRAPENSW*TDMGWD Trigger: ATCCCACCCCATGTCTGTTCACCAGCTGTTCTCAGG...TGCCCTACTCAACCTCCACTGCCCTAGCTTTTCCCACACCCCTTGAATAGATAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR-3UTR CCA 90 bp | CCCACAAAGAAATCAATGGCTGTGACATCCAAGGGGGAGAGGAGAGCACACACAGCTATTTGGGCTGTCTaGCCAGGTCACTGTCTGGCA | + |
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Preference number: 2 (lower is better) Translates to: PTKKSMAVTSKGERRAHTAIWAV*PGHCLA Trigger: TGCCAGACAGTGACCTGGCCAGACAGCCCAAATAGC...TGTGTGTGCTCTCCTCTCCCCCTTGGATGTCACAGCCATTGATTTCTTTGTGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR-3UTR GCA 90 bp | TGGAAATACCTATCTATTCAAGGGGTGTGGGAAAAGCTAGGGCAGTGGAGGTTGGCCTTGGGAAGGTTCTaGACACACAAGAGCTGGGGC | + |
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Preference number: 2 (lower is better) Translates to: WKYLSIQGVWEKLGQWRLALGRF*THKSWG Trigger: GCCCCAGCTCTTGTGTGTGCAGAACCTTCCCAAGGC...CAACCTCCACTGCCCTAGCTTTTCCCACACCCCTTGAATAGATAGGTATTTCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR-3UTR TCA 90 bp | TGGAAATACCTATCTATTCAAGGGGTGTGGGAAAAGCTAGGGCAGTGGAGGTTGGGCAGAACAGCTAACTaGCAGGTGCCTTGGGAAGGT | + |
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Preference number: 2 (lower is better) Translates to: WKYLSIQGVWEKLGQWRLGRTAN*QVPWEG Trigger: ACCTTCCCAAGGCACCTGTCAGTTAGCTGTTCTGCC...CAACCTCCACTGCCCTAGCTTTTCCCACACCCCTTGAATAGATAGGTATTTCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR-3UTR CCA 90 bp | CCCACAAAGAAATCAATGGCTGTGACATCCAAGGGGGAGAGGAGAGCACACACATTTCGTGGCTTTTCGTaGGCAGCTCATGCACTGGTA | + |
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Preference number: 2 (lower is better) Translates to: PTKKSMAVTSKGERRAHTFRGFS*AAHALV Trigger: TACCAGTGCATGAGCTGCCCACGAAAAGCCACGAAA...TGTGTGTGCTCTCCTCTCCCCCTTGGATGTCACAGCCATTGATTTCTTTGTGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR-3UTR GCA 90 bp | CTCATTCTTAGGGAACAGGATCGTCCTGCAGAGTCACTGGATTTGCAGAAAACATGGAGGCAGATACCATaGAGAAAAGGCCAGCCTGGC | + |
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Preference number: 2 (lower is better) Translates to: LILREQDRPAESLDLQKTWRQIP*RKGQPG Trigger: GCCAGGCTGGCCTTTTCTGCATGGTATCTGCCTCCA...TGTTTTCTGCAAATCCAGTGACTCTGCAGGACGATCCTGTTCCCTAAGAATGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR-3UTR CCA 90 bp | TGTCTCCGTGAGCACCAGAGTCTCCCACACATATACGGTGGAGCAGACATTGTTTGGCTGTCTGTCCATTaGTCTATCCTGAGCAGTTGT | + |
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Preference number: 2 (lower is better) Translates to: CLREHQSLPHIYGGADIVWLSVH*SILSSC Trigger: ACAACTGCTCAGGATAGACCAATGGACAGACAGCCA...AACAATGTCTGCTCCACCGTATATGTGTGGGAGACTCTGGTGCTCACGGAGACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR-3UTR TCA 90 bp | TGGAAATACCTATCTATTCAAGGGGTGTGGGAAAAGCTAGGGCAGTGGAGGTTGTTAGGCAGTGGGAACTaGAAAACTGAGGGTTGGAGG | + |
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Preference number: 2 (lower is better) Translates to: WKYLSIQGVWEKLGQWRLLGSGN*KTEGWR Trigger: CCTCCAACCCTCAGTTTTTCAGTTCCCACTGCCTAA...CAACCTCCACTGCCCTAGCTTTTCCCACACCCCTTGAATAGATAGGTATTTCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR-3UTR GCA 90 bp | CTAGAAGAGCAAGCAGCTTTGGAAATACCTATCTATTCAAGGGGTGTGGGAAAAGCCTTGGGAAGGTTCTaGACACACAAGAGCTGGGGC | + |
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Preference number: 2 (lower is better) Translates to: LEEQAALEIPIYSRGVGKALGRF*THKSWG Trigger: GCCCCAGCTCTTGTGTGTGCAGAACCTTCCCAAGGC...TTTTCCCACACCCCTTGAATAGATAGGTATTTCCAAAGCTGCTTGCTCTTCTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR-3UTR GCA 90 bp | CTGAGAACAGCTGGTGAACAGACATGGGGTGGGATGAGCACTGCTCCCATAGGCATTTGCAGAAAACACTaGACACCAATGATGAGTTTC | + |
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Preference number: 2 (lower is better) Translates to: LRTAGEQTWGGMSTAPIGICRKH*TPMMSF Trigger: GAAACTCATCATTGGTGTGCAGTGTTTTCTGCAAAT...GCCTATGGGAGCAGTGCTCATCCCACCCCATGTCTGTTCACCAGCTGTTCTCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR-3UTR CCA 90 bp | TGGAAATACCTATCTATTCAAGGGGTGTGGGAAAAGCTAGGGCAGTGGAGGTTGTTTCGTGGCTTTTCGTaGGCAGCTCATGCACTGGTA | + |
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Preference number: 2 (lower is better) Translates to: WKYLSIQGVWEKLGQWRLFRGFS*AAHALV Trigger: TACCAGTGCATGAGCTGCCCACGAAAAGCCACGAAA...CAACCTCCACTGCCCTAGCTTTTCCCACACCCCTTGAATAGATAGGTATTTCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR-3UTR GCA 90 bp | CTAGAAGAGCAAGCAGCTTTGGAAATACCTATCTATTCAAGGGGTGTGGGAAAATGGAGGCAGATACCATaGAGAAAAGGCCAGCCTGGC | + |
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Preference number: 2 (lower is better) Translates to: LEEQAALEIPIYSRGVGKWRQIP*RKGQPG Trigger: GCCAGGCTGGCCTTTTCTGCATGGTATCTGCCTCCA...TTTTCCCACACCCCTTGAATAGATAGGTATTTCCAAAGCTGCTTGCTCTTCTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR-3UTR GCA 90 bp | CTCATTCTTAGGGAACAGGATCGTCCTGCAGAGTCACTGGATTTGCAGAAAACAATCATAGGTCACCTCTaGTCTCGTGGGAAGGAAACT | + |
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Preference number: 2 (lower is better) Translates to: LILREQDRPAESLDLQKTIIGHL*SRGKET Trigger: AGTTTCCTTCCCACGAGAGCAGAGGTGACCTATGAT...TGTTTTCTGCAAATCCAGTGACTCTGCAGGACGATCCTGTTCCCTAAGAATGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR-3UTR GCA 90 bp | CTTTGGAAATACCTATCTATTCAAGGGGTGTGGGAAAAGCTAGGGCAGTGGAGGCAGAGTCACTGGATTTaGAGAAAACACTGCACACCA | + |
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Preference number: 2 (lower is better) Translates to: LWKYLSIQGVWEKLGQWRQSHWI*RKHCTP Trigger: TGGTGTGCAGTGTTTTCTGCAAATCCAGTGACTCTG...CCTCCACTGCCCTAGCTTTTCCCACACCCCTTGAATAGATAGGTATTTCCAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR-3UTR CCA 90 bp | GAGCAAGCAGCTTTGGAAATACCTATCTATTCAAGGGGTGTGGGAAAAGCTAGGTGGCTGTCTGTCCATTaGTCTATCCTGAGCAGTTGT | + |
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Preference number: 2 (lower is better) Translates to: EQAALEIPIYSRGVGKARWLSVH*SILSSC Trigger: ACAACTGCTCAGGATAGACCAATGGACAGACAGCCA...CCTAGCTTTTCCCACACCCCTTGAATAGATAGGTATTTCCAAAGCTGCTTGCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR-3UTR CCA 90 bp | ACTTGTCCTATTAGCCTTCAATGTTCTGTGCCAGTAAAAGAACTTTGGAGCATGGCTATTTGGGCTGTCTaGCCAGGTCACTGTCTGGCA | + |
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Preference number: 2 (lower is better) Translates to: TCPISLQCSVPVKELWSMAIWAV*PGHCLA Trigger: TGCCAGACAGTGACCTGGCCAGACAGCCCAAATAGC...CATGCTCCAAAGTTCTTTTACTGGCACAGAACATTGAAGGCTAATAGGACAAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR CAA 90 bp | TTTCTCATTCTTAGGGAACAGGATCGTCCTGCAGAGTCACTGGATTaGCAGAAAACACTGCACACCAATGATGAGTTTCAGGCGGAATCA | + |
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Preference number: 2 (lower is better) Translates to: FLILREQDRPAESLD*QKTLHTNDEFQAES Trigger: TGATTCCGCCTGAAACTCATCATTGGTGTGCAGTGTTTTCTGCAAATCCAGTGACTCTGCAGGACGATCCTGTTCCCTAAGAATGAGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR-3UTR TCA 90 bp | CTAGAAGAGCAAGCAGCTTTGGAAATACCTATCTATTCAAGGGGTGTGGGAAAATGGGAACTGAAAAACTaGGGGTTGGAGGGCACTGTA | + |
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Preference number: 2 (lower is better) Translates to: LEEQAALEIPIYSRGVGKWELKN*GLEGTV Trigger: TACAGTGCCCTCCAACCCTCAGTTTTTCAGTTCCCA...TTTTCCCACACCCCTTGAATAGATAGGTATTTCCAAAGCTGCTTGCTCTTCTAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR-3UTR TCA 90 bp | CTAGAAGAGCAAGCAGCTTTGGAAATACCTATCTATTCAAGGGGTGTGGGAAAATTAGGCAGTGGGAACTaGAAAACTGAGGGTTGGAGG | + |
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Preference number: 2 (lower is better) Translates to: LEEQAALEIPIYSRGVGKLGSGN*KTEGWR Trigger: CCTCCAACCCTCAGTTTTTCAGTTCCCACTGCCTAA...TTTTCCCACACCCCTTGAATAGATAGGTATTTCCAAAGCTGCTTGCTCTTCTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR-3UTR TCA 90 bp | CCCACAAAGAAATCAATGGCTGTGACATCCAAGGGGGAGAGGAGAGCACACACATTCAGAACATTACACTaGAAGTCAGTTATTGCTAGC | + |
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Preference number: 2 (lower is better) Translates to: PTKKSMAVTSKGERRAHTFRTLH*KSVIAS Trigger: GCTAGCAATAACTGACTTTCAGTGTAATGTTCTGAA...TGTGTGTGCTCTCCTCTCCCCCTTGGATGTCACAGCCATTGATTTCTTTGTGGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR-3UTR GCA 90 bp | CCCACAAAGAAATCAATGGCTGTGACATCCAAGGGGGAGAGGAGAGCACACACAATTTGCAGAAAACACTaGACACCAATGATGAGTTTC | + |
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Preference number: 2 (lower is better) Translates to: PTKKSMAVTSKGERRAHTICRKH*TPMMSF Trigger: GAAACTCATCATTGGTGTGCAGTGTTTTCTGCAAAT...TGTGTGTGCTCTCCTCTCCCCCTTGGATGTCACAGCCATTGATTTCTTTGTGGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR-3UTR GCA 90 bp | GAGCAAGCAGCTTTGGAAATACCTATCTATTCAAGGGGTGTGGGAAAAGCTAGGCAGAGTCACTGGATTTaGAGAAAACACTGCACACCA | + |
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Preference number: 2 (lower is better) Translates to: EQAALEIPIYSRGVGKARQSHWI*RKHCTP Trigger: TGGTGTGCAGTGTTTTCTGCAAATCCAGTGACTCTG...CCTAGCTTTTCCCACACCCCTTGAATAGATAGGTATTTCCAAAGCTGCTTGCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR-3UTR GCA 90 bp | CTATCTATTCAAGGGGTGTGGGAAAAGCTAGGGCAGTGGAGGTTGAGTAGGGCAAAGAACGGGTTTTATTaGACTTTCTCATTCTTAGGG | + |
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Preference number: 2 (lower is better) Translates to: LSIQGVWEKLGQWRLSRAKNGFY*TFSFLG Trigger: CCCTAAGAATGAGAAAGTGCAATAAAACCCGTTCTT...TGCCCTACTCAACCTCCACTGCCCTAGCTTTTCCCACACCCCTTGAATAGATAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR-3UTR GCA 90 bp | TGTCTCCGTGAGCACCAGAGTCTCCCACACATATACGGTGGAGCAGACATTGTTAAGAACGGGTTTTATTaGACTTTCTCATTCTTAGGG | + |
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Preference number: 2 (lower is better) Translates to: CLREHQSLPHIYGGADIVKNGFY*TFSFLG Trigger: CCCTAAGAATGAGAAAGTGCAATAAAACCCGTTCTT...AACAATGTCTGCTCCACCGTATATGTGTGGGAGACTCTGGTGCTCACGGAGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR-3UTR CCA 90 bp | TCAAACACTTGTCCTATTAGCCTTCAATGTTCTGTGCCAGTAAAAGAACTTTGGGCTATTTGGGCTGTCTaGCCAGGTCACTGTCTGGCA | + |
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Preference number: 2 (lower is better) Translates to: SNTCPISLQCSVPVKELWAIWAV*PGHCLA Trigger: TGCCAGACAGTGACCTGGCCAGACAGCCCAAATAGC...CCAAAGTTCTTTTACTGGCACAGAACATTGAAGGCTAATAGGACAAGTGTTTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR-3UTR TCA 90 bp | TCAAACACTTGTCCTATTAGCCTTCAATGTTCTGTGCCAGTAAAAGAACTTTGGAAGAGGCTGGAGCCATaGTGCTCAACCCCAATATGC | + |
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Preference number: 2 (lower is better) Translates to: SNTCPISLQCSVPVKELWKRLEP*CSTPIC Trigger: GCATATTGGGGTTGAGCATCATGGCTCCAGCCTCTT...CCAAAGTTCTTTTACTGGCACAGAACATTGAAGGCTAATAGGACAAGTGTTTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| 3UTR-3UTR GCA 90 bp | ACTTGTCCTATTAGCCTTCAATGTTCTGTGCCAGTAAAAGAACTTTGGAGCATGATCATAGGTCACCTCTaGTCTCGTGGGAAGGAAACT | + |
|
Preference number: 2 (lower is better) Translates to: TCPISLQCSVPVKELWSMIIGHL*SRGKET Trigger: AGTTTCCTTCCCACGAGAGCAGAGGTGACCTATGAT...CATGCTCCAAAGTTCTTTTACTGGCACAGAACATTGAAGGCTAATAGGACAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| 3UTR-3UTR CCA 90 bp | ACTTGTCCTATTAGCCTTCAATGTTCTGTGCCAGTAAAAGAACTTTGGAGCATGAACAGGGAAACTACTTaGCCAACATGTAAGCTCCAT | + |
|
Preference number: 2 (lower is better) Translates to: TCPISLQCSVPVKELWSMNRETT*PTCKLH Trigger: ATGGAGCTTACATGTTGGCCAAGTAGTTTCCCTGTT...CATGCTCCAAAGTTCTTTTACTGGCACAGAACATTGAAGGCTAATAGGACAAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| 3UTR-3UTR CCA 90 bp | TCAAACACTTGTCCTATTAGCCTTCAATGTTCTGTGCCAGTAAAAGAACTTTGGAACAGGGAAACTACTTaGCCAACATGTAAGCTCCAT | + |
|
Preference number: 2 (lower is better) Translates to: SNTCPISLQCSVPVKELWNRETT*PTCKLH Trigger: ATGGAGCTTACATGTTGGCCAAGTAGTTTCCCTGTT...CCAAAGTTCTTTTACTGGCACAGAACATTGAAGGCTAATAGGACAAGTGTTTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| 3UTR TCA 72 bp | GGGCTCAGACCACCCAAAGGGGCAGTGATGCTGAGCTaGTCTAGGAGGATCCCTGGACCGTGCTCCATAGCA | + |
|
Preference number: 3 (lower is better) Translates to: GLRPPKGAVMLS*SRRIPGPCSIA Trigger: TGCTATGGAGCACGGTCCAGGGATCCTCCTAGATCAGCTCAGCATCACTGCCCCTTTGGGTGGTCTGAGCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| 3UTR CCA 72 bp | ATGGGGTGGGATGAGCACTGCTCCCATAGGCGACACTaGGCTGAGGATACCAGCAGTGCTACAGCTTCCAGA | + |
|
Preference number: 3 (lower is better) Translates to: MGWDEHCSHRRH*AEDTSSATASR Trigger: TCTGGAAGCTGTAGCACTGCTGGTATCCTCAGCCCAGTGTCGCCTATGGGAGCAGTGCTCATCCCACCCCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| 3UTR-3UTR CAA 90 bp | TGGAGGTGGAGGCAGGCTGGCATTCAAGGCCTATCCTCTACAAGCCGCCCTGTGGCAGAGTCACTGGATTaGCAGAAAACACTGCACACC | + |
|
Preference number: 3 (lower is better) Translates to: WRWRQAGIQGLSSTSRPVAESLD*QKTLHT Trigger: GGTGTGCAGTGTTTTCTGCAAATCCAGTGACTCTGC...CACAGGGCGGCTTGTAGAGGATAGGCCTTGAATGCCAGCCTGCCTCCACCTCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| 3UTR-3UTR CAA 90 bp | CTGAGAACAGCTGGTGAACAGACATGGGGTGGGATGAGCACTGCTCCCATAGGCGCAGAGTCACTGGATTaGCAGAAAACACTGCACACC | + |
|
Preference number: 3 (lower is better) Translates to: LRTAGEQTWGGMSTAPIGAESLD*QKTLHT Trigger: GGTGTGCAGTGTTTTCTGCAAATCCAGTGACTCTGC...GCCTATGGGAGCAGTGCTCATCCCACCCCATGTCTGTTCACCAGCTGTTCTCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| 3UTR-3UTR CAA 90 bp | CCCACAAAGAAATCAATGGCTGTGACATCCAAGGGGGAGAGGAGAGCACACACACTAGGGCAGTGGAGGTaGAGTAGGGCAACACCTCTG | + |
|
Preference number: 3 (lower is better) Translates to: PTKKSMAVTSKGERRAHTLGQWR*SRATPL Trigger: CAGAGGTGTTGCCCTACTCAACCTCCACTGCCCTAG...TGTGTGTGCTCTCCTCTCCCCCTTGGATGTCACAGCCATTGATTTCTTTGTGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| 3UTR-3UTR CAA 90 bp | CCCACAAAGAAATCAATGGCTGTGACATCCAAGGGGGAGAGGAGAGCACACACAGTATCCTTGGGCTATTaGGGCTGTCTGGCCAGGTCA | + |
|
Preference number: 3 (lower is better) Translates to: PTKKSMAVTSKGERRAHTVSLGY*GCLARS Trigger: TGACCTGGCCAGACAGCCCAAATAGCCCAAGGATAC...TGTGTGTGCTCTCCTCTCCCCCTTGGATGTCACAGCCATTGATTTCTTTGTGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| 3UTR-3UTR CAA 90 bp | CTATCTATTCAAGGGGTGTGGGAAAAGCTAGGGCAGTGGAGGTTGAGTAGGGCAGTATCCTTGGGCTATTaGGGCTGTCTGGCCAGGTCA | + |
|
Preference number: 3 (lower is better) Translates to: LSIQGVWEKLGQWRLSRAVSLGY*GCLARS Trigger: TGACCTGGCCAGACAGCCCAAATAGCCCAAGGATAC...TGCCCTACTCAACCTCCACTGCCCTAGCTTTTCCCACACCCCTTGAATAGATAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| 3UTR-3UTR CAA 90 bp | GAAAAGCTAGGGCAGTGGAGGTTGAGTAGGGCAACACCTCTGACAAATGGGCAACTGGCTGTCTGTCCATaGGTCTATCCTGAGCAGTTG | + |
|
Preference number: 3 (lower is better) Translates to: EKLGQWRLSRATPLTNGQLAVCP*VYPEQL Trigger: CAACTGCTCAGGATAGACCAATGGACAGACAGCCAG...TTGCCCATTTGTCAGAGGTGTTGCCCTACTCAACCTCCACTGCCCTAGCTTTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| 3UTR-3UTR CAA 90 bp | TGGAGGTGGAGGCAGGCTGGCATTCAAGGCCTATCCTCTACAAGCCGCCCTGTGGAAGAACGGGTTTTATaGCACTTTCTCATTCTTAGG | + |
|
Preference number: 3 (lower is better) Translates to: WRWRQAGIQGLSSTSRPVEERVL*HFLILR Trigger: CCTAAGAATGAGAAAGTGCAATAAAACCCGTTCTTC...CACAGGGCGGCTTGTAGAGGATAGGCCTTGAATGCCAGCCTGCCTCCACCTCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| 3UTR-3UTR CAA 90 bp | GAAAAGCTAGGGCAGTGGAGGTTGAGTAGGGCAACACCTCTGACAAATGGGCAAGCAGAGTCACTGGATTaGCAGAAAACACTGCACACC | + |
|
Preference number: 3 (lower is better) Translates to: EKLGQWRLSRATPLTNGQAESLD*QKTLHT Trigger: GGTGTGCAGTGTTTTCTGCAAATCCAGTGACTCTGC...TTGCCCATTTGTCAGAGGTGTTGCCCTACTCAACCTCCACTGCCCTAGCTTTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| 3UTR CCA 72 bp | AAACTGGAGGCAGATACCATGCAGAAAAGGCCAGCCTaGCTGTCTGTCCATTGGTCTATCCTGAGCAGTTGT | + |
|
Preference number: 3 (lower is better) Translates to: KLEADTMQKRPA*LSVHWSILSSC Trigger: ACAACTGCTCAGGATAGACCAATGGACAGACAGCCAGGCTGGCCTTTTCTGCATGGTATCTGCCTCCAGTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| 3UTR CCA 72 bp | CTATCTATTCAAGGGGTGTGGGAAAAGCTAGGGCAGTaGAGGTTGAGTAGGGCAACACCTCTGACAAATGGG | + |
|
Preference number: 3 (lower is better) Translates to: LSIQGVWEKLGQ*RLSRATPLTNG Trigger: CCCATTTGTCAGAGGTGTTGCCCTACTCAACCTCCACTGCCCTAGCTTTTCCCACACCCCTTGAATAGATAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| 3UTR CCA 72 bp | ATATACGGTGGAGCAGACATTGTTATGTGGTCCCACTaGAAGAGGCACCATGCTTTGCTGACCAAAACCCAC | + |
|
Preference number: 3 (lower is better) Translates to: IYGGADIVMWSH*KRHHALLTKTH Trigger: GTGGGTTTTGGTCAGCAAAGCATGGTGCCTCTTCCAGTGGGACCACATAACAATGTCTGCTCCACCGTATAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| 3UTR-3UTR CAA 90 bp | GAGCAAGCAGCTTTGGAAATACCTATCTATTCAAGGGGTGTGGGAAAAGCTAGGCTGGCTGTCTGTCCATaGGTCTATCCTGAGCAGTTG | + |
|
Preference number: 3 (lower is better) Translates to: EQAALEIPIYSRGVGKARLAVCP*VYPEQL Trigger: CAACTGCTCAGGATAGACCAATGGACAGACAGCCAG...CCTAGCTTTTCCCACACCCCTTGAATAGATAGGTATTTCCAAAGCTGCTTGCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| 3UTR CCA 72 bp | AAGCAGCTTTGGAAATACCTATCTATTCAAGGGGTGTaGGAAAAGCTAGGGCAGTGGAGGTTGAGTAGGGCA | + |
|
Preference number: 3 (lower is better) Translates to: KQLWKYLSIQGV*EKLGQWRLSRA Trigger: TGCCCTACTCAACCTCCACTGCCCTAGCTTTTCCCACACCCCTTGAATAGATAGGTATTTCCAAAGCTGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| 3UTR-3UTR CAA 90 bp | CTAGAAGAGCAAGCAGCTTTGGAAATACCTATCTATTCAAGGGGTGTGGGAAAAGTATCCTTGGGCTATTaGGGCTGTCTGGCCAGGTCA | + |
|
Preference number: 3 (lower is better) Translates to: LEEQAALEIPIYSRGVGKVSLGY*GCLARS Trigger: TGACCTGGCCAGACAGCCCAAATAGCCCAAGGATAC...TTTTCCCACACCCCTTGAATAGATAGGTATTTCCAAAGCTGCTTGCTCTTCTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| 3UTR-3UTR CAA 90 bp | TGTCTCCGTGAGCACCAGAGTCTCCCACACATATACGGTGGAGCAGACATTGTTGAAGAACGGGTTTTATaGCACTTTCTCATTCTTAGG | + |
|
Preference number: 3 (lower is better) Translates to: CLREHQSLPHIYGGADIVEERVL*HFLILR Trigger: CCTAAGAATGAGAAAGTGCAATAAAACCCGTTCTTC...AACAATGTCTGCTCCACCGTATATGTGTGGGAGACTCTGGTGCTCACGGAGACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| 3UTR TCA 72 bp | CTGAGGATACCAGCAGTGCTACAGCTTCCAGATTGCTaGAGAGCAGGTGAAGAACGGGTTTTATTGCACTTT | + |
|
Preference number: 3 (lower is better) Translates to: LRIPAVLQLPDC*RAGEERVLLHF Trigger: AAAGTGCAATAAAACCCGTTCTTCACCTGCTCTTCAGCAATCTGGAAGCTGTAGCACTGCTGGTATCCTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| 3UTR GCA 72 bp | TTAGGGAACAGGATCGTCCTGCAGAGTCACTGGATTTaGAGAAAACACTGCACACCAATGATGAGTTTCAGG | + |
|
Preference number: 3 (lower is better) Translates to: LGNRIVLQSHWI*RKHCTPMMSFR Trigger: CCTGAAACTCATCATTGGTGTGCAGTGTTTTCTGCAAATCCAGTGACTCTGCAGGACGATCCTGTTCCCTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| 3UTR GCA 72 bp | CAGATTGCTGAAGAGCAGGTGAAGAACGGGTTTTATTaGACTTTCTCATTCTTAGGGAACAGGATCGTCCTG | + |
|
Preference number: 3 (lower is better) Translates to: QIAEEQVKNGFY*TFSFLGNRIVL Trigger: CAGGACGATCCTGTTCCCTAAGAATGAGAAAGTGCAATAAAACCCGTTCTTCACCTGCTCTTCAGCAATCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| 3UTR-3UTR CAA 90 bp | TCAAACACTTGTCCTATTAGCCTTCAATGTTCTGTGCCAGTAAAAGAACTTTGGGAAGAACGGGTTTTATaGCACTTTCTCATTCTTAGG | + |
|
Preference number: 3 (lower is better) Translates to: SNTCPISLQCSVPVKELWEERVL*HFLILR Trigger: CCTAAGAATGAGAAAGTGCAATAAAACCCGTTCTTC...CCAAAGTTCTTTTACTGGCACAGAACATTGAAGGCTAATAGGACAAGTGTTTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| CDS-3UTR GCA 90 bp | CTGAGAACAGCTGGTGAACAGACATGGGGTGGGATGAGCACTGCTCCCATAGGCGCTCCTCATCATCACTaGTCACCACACAGCTGTCAG | + |
|
Preference number: 4 (lower is better) Translates to: LRTAGEQTWGGMSTAPIGAPHHH*SPHSCQ Trigger: CTGACAGCTGTGTGGTGAGCAGTGATGATGAGGAGC...GCCTATGGGAGCAGTGCTCATCCCACCCCATGTCTGTTCACCAGCTGTTCTCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| CDS-3UTR TCA 90 bp | TGGAAATACCTATCTATTCAAGGGGTGTGGGAAAAGCTAGGGCAGTGGAGGTTGACAACTGACGGTACCTaGGGGCCTGGGTCCAGTAGC | + |
|
Preference number: 4 (lower is better) Translates to: WKYLSIQGVWEKLGQWRLTTDGT*GPGSSS Trigger: GCTACTGGACCCAGGCCCTCAGGTACCGTCAGTTGT...CAACCTCCACTGCCCTAGCTTTTCCCACACCCCTTGAATAGATAGGTATTTCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| CDS-3UTR GCA 90 bp | TGGAGGCAGATACCATGCAGAAAAGGCCAGCCTGGCTGTCTGTCCATTGGTCTAGCTCCTCATCATCACTaGTCACCACACAGCTGTCAG | + |
|
Preference number: 4 (lower is better) Translates to: WRQIPCRKGQPGCLSIGLAPHHH*SPHSCQ Trigger: CTGACAGCTGTGTGGTGAGCAGTGATGATGAGGAGC...TAGACCAATGGACAGACAGCCAGGCTGGCCTTTTCTGCATGGTATCTGCCTCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| CDS-3UTR GCA 90 bp | GGAGGCAGATACCATGCAGAAAAGGCCAGCCTGGCTGTCTGTCCATTGGTCTATATGAGACGCCCATTCTaGACAATCTCAGAGTATCCA | + |
|
Preference number: 4 (lower is better) Translates to: GGRYHAEKASLAVCPLVYMRRPF*TISEYP Trigger: TGGATACTCTGAGATTGTGCAGAATGGGCGTCTCAT...ATAGACCAATGGACAGACAGCCAGGCTGGCCTTTTCTGCATGGTATCTGCCTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| CDS-3UTR TCA 90 bp | GGACACTCAAACACTTGTCCTATTAGCCTTCAATGTTCTGTGCCAGTAAAAGAAACAACTGACGGTACCTaGGGGCCTGGGTCCAGTAGC | + |
|
Preference number: 4 (lower is better) Translates to: GHSNTCPISLQCSVPVKETTDGT*GPGSSS Trigger: GCTACTGGACCCAGGCCCTCAGGTACCGTCAGTTGT...TTCTTTTACTGGCACAGAACATTGAAGGCTAATAGGACAAGTGTTTGAGTGTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| CDS-3UTR GCA 90 bp | GAGCAAGCAGCTTTGGAAATACCTATCTATTCAAGGGGTGTGGGAAAAGCTAGGGCTCCTCATCATCACTaGTCACCACACAGCTGTCAG | + |
|
Preference number: 4 (lower is better) Translates to: EQAALEIPIYSRGVGKARAPHHH*SPHSCQ Trigger: CTGACAGCTGTGTGGTGAGCAGTGATGATGAGGAGC...CCTAGCTTTTCCCACACCCCTTGAATAGATAGGTATTTCCAAAGCTGCTTGCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| CDS-3UTR GCA 90 bp | TGTCTCCGTGAGCACCAGAGTCTCCCACACATATACGGTGGAGCAGACATTGTTATGAGACGCCCATTCTaGACAATCTCAGAGTATCCA | + |
|
Preference number: 4 (lower is better) Translates to: CLREHQSLPHIYGGADIVMRRPF*TISEYP Trigger: TGGATACTCTGAGATTGTGCAGAATGGGCGTCTCAT...AACAATGTCTGCTCCACCGTATATGTGTGGGAGACTCTGGTGCTCACGGAGACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| 3UTR CAA 72 bp | CTTAGGGAACAGGATCGTCCTGCAGAGTCACTGGATTaGCAGAAAACACTGCACACCAATGATGAGTTTCAG | + |
|
Preference number: 4 (lower is better) Translates to: LREQDRPAESLD*QKTLHTNDEFQ Trigger: CTGAAACTCATCATTGGTGTGCAGTGTTTTCTGCAAATCCAGTGACTCTGCAGGACGATCCTGTTCCCTAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| 3UTR CAA 72 bp | GGATCAAAGCTCAACTGGCTAGAAGAGCAAGCAGCTTaGGAAATACCTATCTATTCAAGGGGTGTGGGAAAA | + |
|
Preference number: 4 (lower is better) Translates to: GSKLNWLEEQAA*EIPIYSRGVGK Trigger: TTTTCCCACACCCCTTGAATAGATAGGTATTTCCAAAGCTGCTTGCTCTTCTAGCCAGTTGAGCTTTGATCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| CDS-3UTR CAA 90 bp | TGGAGGCAGATACCATGCAGAAAAGGCCAGCCTGGCTGTCTGTCCATTGGTCTACCTCAGGGGTCGAAGTaGTTTCCCGAGTTCGCTTCT | + |
|
Preference number: 5 (lower is better) Translates to: WRQIPCRKGQPGCLSIGLPQGSK*FPEFAS Trigger: AGAAGCGAACTCGGGAAACAACTTCGACCCCTGAGG...TAGACCAATGGACAGACAGCCAGGCTGGCCTTTTCTGCATGGTATCTGCCTCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| CDS-3UTR CAA 90 bp | CCCACAAAGAAATCAATGGCTGTGACATCCAAGGGGGAGAGGAGAGCACACACACCTCAGGGGTCGAAGTaGTTTCCCGAGTTCGCTTCT | + |
|
Preference number: 5 (lower is better) Translates to: PTKKSMAVTSKGERRAHTPQGSK*FPEFAS Trigger: AGAAGCGAACTCGGGAAACAACTTCGACCCCTGAGG...TGTGTGTGCTCTCCTCTCCCCCTTGGATGTCACAGCCATTGATTTCTTTGTGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| CDS-3UTR CAA 90 bp | GGAGGCAGATACCATGCAGAAAAGGCCAGCCTGGCTGTCTGTCCATTGGTCTATGTAGCTCCATCATCCTaGGTGCTTCGAGGAGTATGG | + |
|
Preference number: 5 (lower is better) Translates to: GGRYHAEKASLAVCPLVYVAPSS*VLRGVW Trigger: CCATACTCCTCGAAGCACCAAGGATGATGGAGCTAC...ATAGACCAATGGACAGACAGCCAGGCTGGCCTTTTCTGCATGGTATCTGCCTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| CDS-3UTR CAA 90 bp | CTCATTCTTAGGGAACAGGATCGTCCTGCAGAGTCACTGGATTTGCAGAAAACACCTCAGGGGTCGAAGTaGTTTCCCGAGTTCGCTTCT | + |
|
Preference number: 5 (lower is better) Translates to: LILREQDRPAESLDLQKTPQGSK*FPEFAS Trigger: AGAAGCGAACTCGGGAAACAACTTCGACCCCTGAGG...TGTTTTCTGCAAATCCAGTGACTCTGCAGGACGATCCTGTTCCCTAAGAATGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| CDS-3UTR CAA 90 bp | CCCACAAAGAAATCAATGGCTGTGACATCCAAGGGGGAGAGGAGAGCACACACATCCTCCCATTTCTCCTaGGCCTTCTCCTTTCTTCAA | + |
|
Preference number: 5 (lower is better) Translates to: PTKKSMAVTSKGERRAHTSSHFS*AFSFLQ Trigger: TTGAAGAAAGGAGAAGGCCAAGGAGAAATGGGAGGA...TGTGTGTGCTCTCCTCTCCCCCTTGGATGTCACAGCCATTGATTTCTTTGTGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| CDS-3UTR CAA 90 bp | CTATCTATTCAAGGGGTGTGGGAAAAGCTAGGGCAGTGGAGGTTGAGTAGGGCATCCTCCCATTTCTCCTaGGCCTTCTCCTTTCTTCAA | + |
|
Preference number: 5 (lower is better) Translates to: LSIQGVWEKLGQWRLSRASSHFS*AFSFLQ Trigger: TTGAAGAAAGGAGAAGGCCAAGGAGAAATGGGAGGA...TGCCCTACTCAACCTCCACTGCCCTAGCTTTTCCCACACCCCTTGAATAGATAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| CDS-3UTR CAA 90 bp | TGTCTCCGTGAGCACCAGAGTCTCCCACACATATACGGTGGAGCAGACATTGTTACCACGCCGCTTTCTTaGAGGATTTCTTGTACTCAT | + |
|
Preference number: 5 (lower is better) Translates to: CLREHQSLPHIYGGADIVTTPLS*RISCTH Trigger: ATGAGTACAAGAAATCCTCAAAGAAAGCGGCGTGGT...AACAATGTCTGCTCCACCGTATATGTGTGGGAGACTCTGGTGCTCACGGAGACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| CDS-3UTR CAA 90 bp | TGGAAATACCTATCTATTCAAGGGGTGTGGGAAAAGCTAGGGCAGTGGAGGTTGACCACGCCGCTTTCTTaGAGGATTTCTTGTACTCAT | + |
|
Preference number: 5 (lower is better) Translates to: WKYLSIQGVWEKLGQWRLTTPLS*RISCTH Trigger: ATGAGTACAAGAAATCCTCAAAGAAAGCGGCGTGGT...CAACCTCCACTGCCCTAGCTTTTCCCACACCCCTTGAATAGATAGGTATTTCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| CDS-3UTR CAA 90 bp | CTTTGGAAATACCTATCTATTCAAGGGGTGTGGGAAAAGCTAGGGCAGTGGAGGACCACGCCGCTTTCTTaGAGGATTTCTTGTACTCAT | + |
|
Preference number: 5 (lower is better) Translates to: LWKYLSIQGVWEKLGQWRTTPLS*RISCTH Trigger: ATGAGTACAAGAAATCCTCAAAGAAAGCGGCGTGGT...CCTCCACTGCCCTAGCTTTTCCCACACCCCTTGAATAGATAGGTATTTCCAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
||
| CDS-3UTR CAA 90 bp | CTCATTCTTAGGGAACAGGATCGTCCTGCAGAGTCACTGGATTTGCAGAAAACATCCTCCCATTTCTCCTaGGCCTTCTCCTTTCTTCAA | + |
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Preference number: 5 (lower is better) Translates to: LILREQDRPAESLDLQKTSSHFS*AFSFLQ Trigger: TTGAAGAAAGGAGAAGGCCAAGGAGAAATGGGAGGA...TGTTTTCTGCAAATCCAGTGACTCTGCAGGACGATCCTGTTCCCTAAGAATGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| CDS-3UTR CAA 90 bp | CTAGAAGAGCAAGCAGCTTTGGAAATACCTATCTATTCAAGGGGTGTGGGAAAAGTAGCTCCATCATCCTaGGTGCTTCGAGGAGTATGG | + |
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Preference number: 5 (lower is better) Translates to: LEEQAALEIPIYSRGVGKVAPSS*VLRGVW Trigger: CCATACTCCTCGAAGCACCAAGGATGATGGAGCTAC...TTTTCCCACACCCCTTGAATAGATAGGTATTTCCAAAGCTGCTTGCTCTTCTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| CDS-3UTR CAA 90 bp | GAGCAAGCAGCTTTGGAAATACCTATCTATTCAAGGGGTGTGGGAAAAGCTAGGAGTTCGCTTCTGGGTTaGTCTAGAATTCACAGTTCC | + |
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Preference number: 5 (lower is better) Translates to: EQAALEIPIYSRGVGKARSSLLG*SRIHSS Trigger: GGAACTGTGAATTCTAGACAAACCCAGAAGCGAACT...CCTAGCTTTTCCCACACCCCTTGAATAGATAGGTATTTCCAAAGCTGCTTGCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| CDS-3UTR CAA 90 bp | ACTTGTCCTATTAGCCTTCAATGTTCTGTGCCAGTAAAAGAACTTTGGAGCATGGTAGCTCCATCATCCTaGGTGCTTCGAGGAGTATGG | + |
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Preference number: 5 (lower is better) Translates to: TCPISLQCSVPVKELWSMVAPSS*VLRGVW Trigger: CCATACTCCTCGAAGCACCAAGGATGATGGAGCTAC...CATGCTCCAAAGTTCTTTTACTGGCACAGAACATTGAAGGCTAATAGGACAAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| CDS-3UTR CAA 90 bp | CTAGAAGAGCAAGCAGCTTTGGAAATACCTATCTATTCAAGGGGTGTGGGAAAAAGTTCGCTTCTGGGTTaGTCTAGAATTCACAGTTCC | + |
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Preference number: 5 (lower is better) Translates to: LEEQAALEIPIYSRGVGKSSLLG*SRIHSS Trigger: GGAACTGTGAATTCTAGACAAACCCAGAAGCGAACT...TTTTCCCACACCCCTTGAATAGATAGGTATTTCCAAAGCTGCTTGCTCTTCTAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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| CDS GCA 72 bp | TGGCCACATTCTGTAGAAACAATGAGACGCCCATTCTaGACAATCTCAGAGTATCCATCCATACAGATAGGA | + |
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Preference number: 6 (lower is better) Translates to: WPHSVETMRRPF*TISEYPSIQIG Trigger: TCCTATCTGTATGGATGGATACTCTGAGATTGTGCAGAATGGGCGTCTCATTGTTTCTACAGAATGTGGCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030992.13 ENSMUST00000182047.2 ENSMUST00000182709.8 |
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