Pregenerated sensors for RNF39 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036492Ensembl transcript IDs: ENSMUST00000040498.12, ENSMUST00000173072.2
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AAGAAAAAGGTCTTAGGTCATGGAGACTCGGGACTAGACTGGCTTAAAGGCACGTACAGACAAGGTCACTaGAACAGGTGGGGATTTGTG | + |
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Preference number: 2 (lower is better) Translates to: KKKVLGHGDSGLDWLKGTYRQGH*NRWGFV Trigger: CACAAATCCCCACCTGTTTCAGTGACCTTGTCTGTA...CGTGCCTTTAAGCCAGTCTAGTCCCGAGTCTCCATGACCTAAGACCTTTTTCTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040498.12 |
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| 3UTR-3UTR TCA 90 bp | CAAACAGAGCCTCTTTCTCTAGCCTGGCCTAGAATGGTACGGAAAGAGGACTCAAATGTACAAGCCAGTTaGGGTTTTGATTTGGGAGAA | + |
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Preference number: 2 (lower is better) Translates to: QTEPLSLAWPRMVRKEDSNVQAS*GFDLGE Trigger: TTCTCCCAAATCAAAACCTCAACTGGCTTGTACATT...TGAGTCCTCTTTCCGTACCATTCTAGGCCAGGCTAGAGAAAGAGGCTCTGTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040498.12 |
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| 3UTR-3UTR CCA 90 bp | CTCAAGAAAAAGGTCTTAGGTCATGGAGACTCGGGACTAGACTGGCTTAAAGGCGTTGAGGTTTTGATTTaGGAGAATGTGAGTGGACAA | + |
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Preference number: 2 (lower is better) Translates to: LKKKVLGHGDSGLDWLKGVEVLI*ENVSGQ Trigger: TTGTCCACTCACATTCTCCCAAATCAAAACCTCAAC...GCCTTTAAGCCAGTCTAGTCCCGAGTCTCCATGACCTAAGACCTTTTTCTTGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040498.12 |
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| 3UTR TCA 72 bp | TACTCCTGTTCCGATAGGTGTTACAGACAAGGTCACTaGAACAGGTGGGGATTTGTGCAAGGGACAGAAGTA | + |
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Preference number: 3 (lower is better) Translates to: YSCSDRCYRQGH*NRWGFVQGTEV Trigger: TACTTCTGTCCCTTGCACAAATCCCCACCTGTTTCAGTGACCTTGTCTGTAACACCTATCGGAACAGGAGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040498.12 |
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| 3UTR-3UTR CAA 90 bp | GAGCCTCTTTCTCTAGCCTGGCCTAGAATGGTACGGAAAGAGGACTCAAGAAAAAAGCCAGTTGAGGTTTaGATTTGGGAGAATGTGAGT | + |
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Preference number: 3 (lower is better) Translates to: EPLSLAWPRMVRKEDSRKKPVEV*IWENVS Trigger: ACTCACATTCTCCCAAATCAAAACCTCAACTGGCTT...TTTTCTTGAGTCCTCTTTCCGTACCATTCTAGGCCAGGCTAGAGAAAGAGGCTC 46% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000040498.12 |
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| CDS-3UTR CCA 90 bp | CAAACAGAGCCTCTTTCTCTAGCCTGGCCTAGAATGGTACGGAAAGAGGACTCAGCTGCGGCGGGGGCCTaGCACCACCTAGCAGGGTGG | + |
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Preference number: 4 (lower is better) Translates to: QTEPLSLAWPRMVRKEDSAAAGA*HHLAGW Trigger: CCACCCTGCTAGGTGGTGCCAGGCCCCCGCCGCAGC...TGAGTCCTCTTTCCGTACCATTCTAGGCCAGGCTAGAGAAAGAGGCTCTGTTTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040498.12 |
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| CDS-3UTR TCA 90 bp | CTCAAGAAAAAGGTCTTAGGTCATGGAGACTCGGGACTAGACTGGCTTAAAGGCCCAGCAGTGGCGGCCTaGCGCGAAGCCCTGCGCACC | + |
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Preference number: 4 (lower is better) Translates to: LKKKVLGHGDSGLDWLKGPAVAA*REALRT Trigger: GGTGCGCAGGGCTTCGCGTCAGGCCGCCACTGCTGG...GCCTTTAAGCCAGTCTAGTCCCGAGTCTCCATGACCTAAGACCTTTTTCTTGAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040498.12 |
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| CDS-3UTR GCA 90 bp | AAGAAAAAGGTCTTAGGTCATGGAGACTCGGGACTAGACTGGCTTAAAGGCACGCCTGACGCGAAGCCCTaGGCACCCAGCACCGCCGGG | + |
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Preference number: 4 (lower is better) Translates to: KKKVLGHGDSGLDWLKGTPDAKP*APSTAG Trigger: CCCGGCGGTGCTGGGTGCGCAGGGCTTCGCGTCAGG...CGTGCCTTTAAGCCAGTCTAGTCCCGAGTCTCCATGACCTAAGACCTTTTTCTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040498.12 |
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| CDS-3UTR CCA 90 bp | CAAACAGAGCCTCTTTCTCTAGCCTGGCCTAGAATGGTACGGAAAGAGGACTCAGCACGCCAGCAGGACTaGGTCCTCGAAGGGGCCCCC | + |
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Preference number: 4 (lower is better) Translates to: QTEPLSLAWPRMVRKEDSARQQD*VLEGAP Trigger: GGGGGCCCCTTCGAGGACCCAGTCCTGCTGGCGTGC...TGAGTCCTCTTTCCGTACCATTCTAGGCCAGGCTAGAGAAAGAGGCTCTGTTTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040498.12 |
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| CDS-3UTR GCA 90 bp | CTCAAGAAAAAGGTCTTAGGTCATGGAGACTCGGGACTAGACTGGCTTAAAGGCTCCACGCGAATGCGCTaGGGCGGGGGCCTGGCACCA | + |
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Preference number: 4 (lower is better) Translates to: LKKKVLGHGDSGLDWLKGSTRMR*GGGLAP Trigger: TGGTGCCAGGCCCCCGCCGCAGCGCATTCGCGTGGA...GCCTTTAAGCCAGTCTAGTCCCGAGTCTCCATGACCTAAGACCTTTTTCTTGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000040498.12 |
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| CDS-3UTR GCA 90 bp | CTCAAGAAAAAGGTCTTAGGTCATGGAGACTCGGGACTAGACTGGCTTAAAGGCCCAAGTCCACGCGAATaGGCTGCGGCGGGGGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: LKKKVLGHGDSGLDWLKGPSPRE*AAAGAW Trigger: CCAGGCCCCCGCCGCAGCGCATTCGCGTGGACTTGG...GCCTTTAAGCCAGTCTAGTCCCGAGTCTCCATGACCTAAGACCTTTTTCTTGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000040498.12 |
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| CDS-3UTR CCA 90 bp | GAGCCTCTTTCTCTAGCCTGGCCTAGAATGGTACGGAAAGAGGACTCAAGAAAAGCTGCGTCTGGGGCATaGCTGGCCACAGCACGGGCA | + |
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Preference number: 4 (lower is better) Translates to: EPLSLAWPRMVRKEDSRKAASGA*LATARA Trigger: TGCCCGTGCTGTGGCCAGCCATGCCCCAGACGCAGC...TTTTCTTGAGTCCTCTTTCCGTACCATTCTAGGCCAGGCTAGAGAAAGAGGCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040498.12 |
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| CDS-3UTR CCA 90 bp | CTCAAGAAAAAGGTCTTAGGTCATGGAGACTCGGGACTAGACTGGCTTAAAGGCAGCGGGCCCGGCGCCTaGAAGGCGAAGAGCAAGTCC | + |
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Preference number: 4 (lower is better) Translates to: LKKKVLGHGDSGLDWLKGSGPGA*KAKSKS Trigger: GGACTTGCTCTTCGCCTTCCAGGCGCCGGGCCCGCT...GCCTTTAAGCCAGTCTAGTCCCGAGTCTCCATGACCTAAGACCTTTTTCTTGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040498.12 |
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| CDS-3UTR CCA 90 bp | CAAACAGAGCCTCTTTCTCTAGCCTGGCCTAGAATGGTACGGAAAGAGGACTCACTGCCAGTCGCACGTTaGACCTCAGGCTGCGTCTGG | + |
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Preference number: 4 (lower is better) Translates to: QTEPLSLAWPRMVRKEDSLPVAR*TSGCVW Trigger: CCAGACGCAGCCTGAGGTCCAACGTGCGACTGGCAG...TGAGTCCTCTTTCCGTACCATTCTAGGCCAGGCTAGAGAAAGAGGCTCTGTTTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040498.12 |
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| CDS-3UTR CCA 90 bp | AAGAAAAAGGTCTTAGGTCATGGAGACTCGGGACTAGACTGGCTTAAAGGCACGGATCCAGGCAACCCATaGTGGGGATGCGGCCACCGC | + |
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Preference number: 4 (lower is better) Translates to: KKKVLGHGDSGLDWLKGTDPGNP*WGCGHR Trigger: GCGGTGGCCGCATCCCCACCATGGGTTGCCTGGATC...CGTGCCTTTAAGCCAGTCTAGTCCCGAGTCTCCATGACCTAAGACCTTTTTCTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040498.12 |
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| CDS-3UTR GCA 90 bp | GAGCCTCTTTCTCTAGCCTGGCCTAGAATGGTACGGAAAGAGGACTCAAGAAAAGGACATGTCGCCAGCTaGTCCAGACGCTCCACCAAC | + |
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Preference number: 4 (lower is better) Translates to: EPLSLAWPRMVRKEDSRKGHVAS*SRRSTN Trigger: GTTGGTGGAGCGTCTGGAGCAGCTGGCGACATGTCC...TTTTCTTGAGTCCTCTTTCCGTACCATTCTAGGCCAGGCTAGAGAAAGAGGCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040498.12 |
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| CDS-3UTR TCA 90 bp | CAAACAGAGCCTCTTTCTCTAGCCTGGCCTAGAATGGTACGGAAAGAGGACTCACCCGCGTTCTCATCCTaGGCTGTAGAGTCTCTGAAG | + |
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Preference number: 4 (lower is better) Translates to: QTEPLSLAWPRMVRKEDSPAFSS*AVESLK Trigger: CTTCAGAGACTCTACAGCTCAGGATGAGAACGCGGG...TGAGTCCTCTTTCCGTACCATTCTAGGCCAGGCTAGAGAAAGAGGCTCTGTTTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040498.12 |
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| CDS-3UTR GCA 90 bp | CTCAAGAAAAAGGTCTTAGGTCATGGAGACTCGGGACTAGACTGGCTTAAAGGCTACGCGGGTCACAAGTaGAGAGCAGGGGGAAGACAC | + |
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Preference number: 4 (lower is better) Translates to: LKKKVLGHGDSGLDWLKGYAGHK*RAGGRH Trigger: GTGTCTTCCCCCTGCTCTGCACTTGTGACCCGCGTA...GCCTTTAAGCCAGTCTAGTCCCGAGTCTCCATGACCTAAGACCTTTTTCTTGAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000040498.12 |
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| CDS-3UTR CCA 90 bp | GAGCCTCTTTCTCTAGCCTGGCCTAGAATGGTACGGAAAGAGGACTCAAGAAAACTCATATCCTCTCCGTaGGGATCCAGGCAACCCATG | + |
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Preference number: 4 (lower is better) Translates to: EPLSLAWPRMVRKEDSRKLISSP*GSRQPM Trigger: CATGGGTTGCCTGGATCCCCACGGAGAGGATATGAG...TTTTCTTGAGTCCTCTTTCCGTACCATTCTAGGCCAGGCTAGAGAAAGAGGCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040498.12 |
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| CDS-3UTR TCA 90 bp | CAAACAGAGCCTCTTTCTCTAGCCTGGCCTAGAATGGTACGGAAAGAGGACTCATCAGCTGTCAGCCTGTaGAGCATGTTTTTGACCACG | + |
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Preference number: 4 (lower is better) Translates to: QTEPLSLAWPRMVRKEDSSAVSL*SMFLTT Trigger: CGTGGTCAAAAACATGCTTCACAGGCTGACAGCTGA...TGAGTCCTCTTTCCGTACCATTCTAGGCCAGGCTAGAGAAAGAGGCTCTGTTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040498.12 |
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| 3UTR CAA 72 bp | GGCTTAAAGGCACGAATGTACAAGCCAGTTGAGGTTTaGATTTGGGAGAATGTGAGTGGACAAAGGGTGCTT | + |
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Preference number: 4 (lower is better) Translates to: GLKARMYKPVEV*IWENVSGQRVL Trigger: AAGCACCCTTTGTCCACTCACATTCTCCCAAATCAAAACCTCAACTGGCTTGTACATTCGTGCCTTTAAGCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040498.12 |
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| CDS CCA 90 bp | ATGTCTTCCTCATATCCTCTCCGTGGGGATCCAGGCAACCCATGGTaGGGATGCGGCCACCGCGTCGTCTCCCGGCCCGGGCTCCGGGCT | + |
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Preference number: 5 (lower is better) Translates to: MSSSYPLRGDPGNPW*GCGHRVVSRPGLRA Trigger: AGCCCGGAGCCCGGGCCGGGAGACGACGCGGTGGCCGCATCCCCACCATGGGTTGCCTGGATCCCCACGGAGAGGATATGAGGAAGACAT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040498.12 ENSMUST00000173072.2 |
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| CDS CCA 90 bp | TCCATGTCTTCCTCATATCCTCTCCGTGGGGATCCAGGCAACCCATaGTGGGGATGCGGCCACCGCGTCGTCTCCCGGCCCGGGCTCCGG | + |
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Preference number: 5 (lower is better) Translates to: SMSSSYPLRGDPGNP*WGCGHRVVSRPGLR Trigger: CCGGAGCCCGGGCCGGGAGACGACGCGGTGGCCGCATCCCCACCATGGGTTGCCTGGATCCCCACGGAGAGGATATGAGGAAGACATGGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040498.12 ENSMUST00000173072.2 |
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| CDS GCA 90 bp | CTCCGCCAGTTTCTCACGCAGCCCACGGCTGATGCGCACCTCCACTaGCAGTCGCACGTTGGACCTCAGGCTGCGTCTGGGGCATGGCTG | + |
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Preference number: 5 (lower is better) Translates to: LRQFLTQPTADAHLH*QSHVGPQAASGAWL Trigger: CAGCCATGCCCCAGACGCAGCCTGAGGTCCAACGTGCGACTGGCAGTGGAGGTGCGCATCAGCCGTGGGCTGCGTGAGAAACTGGCGGAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040498.12 ENSMUST00000173072.2 |
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| CDS-3UTR CAA 90 bp | CAAACAGAGCCTCTTTCTCTAGCCTGGCCTAGAATGGTACGGAAAGAGGACTCAACTGCCAGTCGCACGTaGGACCTCAGGCTGCGTCTG | + |
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Preference number: 5 (lower is better) Translates to: QTEPLSLAWPRMVRKEDSTASRT*DLRLRL Trigger: CAGACGCAGCCTGAGGTCCAACGTGCGACTGGCAGT...TGAGTCCTCTTTCCGTACCATTCTAGGCCAGGCTAGAGAAAGAGGCTCTGTTTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040498.12 |
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| CDS-3UTR CAA 90 bp | GAGCCTCTTTCTCTAGCCTGGCCTAGAATGGTACGGAAAGAGGACTCAAGAAAATCCGATGGGCACAGCTaGATGAGGCCCTTGCGGGTC | + |
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Preference number: 5 (lower is better) Translates to: EPLSLAWPRMVRKEDSRKSDGHS*MRPLRV Trigger: GACCCGCAAGGGCCTCATCAAGCTGTGCCCATCGGA...TTTTCTTGAGTCCTCTTTCCGTACCATTCTAGGCCAGGCTAGAGAAAGAGGCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040498.12 |
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| CDS-3UTR CAA 90 bp | AAGAAAAAGGTCTTAGGTCATGGAGACTCGGGACTAGACTGGCTTAAAGGCACGTCTGAGTTAGATGGCTaGGGTGCTGGGACATCGAAT | + |
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Preference number: 5 (lower is better) Translates to: KKKVLGHGDSGLDWLKGTSELDG*GAGTSN Trigger: ATTCGATGTCCCAGCACCCAAGCCATCTAACTCAGA...CGTGCCTTTAAGCCAGTCTAGTCCCGAGTCTCCATGACCTAAGACCTTTTTCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040498.12 |
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| CDS CCA 72 bp | TCATATCCTCTCCGTGGGGATCCAGGCAACCCATGGTaGGGATGCGGCCACCGCGTCGTCTCCCGGCCCGGG | + |
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Preference number: 6 (lower is better) Translates to: SYPLRGDPGNPW*GCGHRVVSRPG Trigger: CCCGGGCCGGGAGACGACGCGGTGGCCGCATCCCCACCATGGGTTGCCTGGATCCCCACGGAGAGGATATGA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040498.12 ENSMUST00000173072.2 |
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| CDS TCA 72 bp | CGGGCCCGGCGCCTGGAAGGCGAAGAGCAAGTCCAATaGGCGGCCGTCATAGAAGGCCACACGACCCCGCTC | + |
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Preference number: 6 (lower is better) Translates to: RARRLEGEEQVQ*AAVIEGHTTPL Trigger: GAGCGGGGTCGTGTGGCCTTCTATGACGGCCGCTCATTGGACTTGCTCTTCGCCTTCCAGGCGCCGGGCCCG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040498.12 |
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| CDS CCA 72 bp | TCCTCATATCCTCTCCGTGGGGATCCAGGCAACCCATaGTGGGGATGCGGCCACCGCGTCGTCTCCCGGCCC | + |
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Preference number: 6 (lower is better) Translates to: SSYPLRGDPGNP*WGCGHRVVSRP Trigger: GGGCCGGGAGACGACGCGGTGGCCGCATCCCCACCATGGGTTGCCTGGATCCCCACGGAGAGGATATGAGGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040498.12 ENSMUST00000173072.2 |
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| CDS CAA 72 bp | CCACGGCTGATGCGCACCTCCACTGCCAGTCGCACGTaGGACCTCAGGCTGCGTCTGGGGCATGGCTGGCCA | + |
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Preference number: 6 (lower is better) Translates to: PRLMRTSTASRT*DLRLRLGHGWP Trigger: TGGCCAGCCATGCCCCAGACGCAGCCTGAGGTCCAACGTGCGACTGGCAGTGGAGGTGCGCATCAGCCGTGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040498.12 ENSMUST00000173072.2 |
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| CDS CAA 72 bp | CCCTCCACGGCCCATATAGCCTCCGATGGGCACAGCTaGATGAGGCCCTTGCGGGTCACGGACTCCCCGGCA | + |
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Preference number: 6 (lower is better) Translates to: PSTAHIASDGHS*MRPLRVTDSPA Trigger: TGCCGGGGAGTCCGTGACCCGCAAGGGCCTCATCAAGCTGTGCCCATCGGAGGCTATATGGGCCGTGGAGGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040498.12 |
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| CDS GCA 72 bp | TTTCTCACGCAGCCCACGGCTGATGCGCACCTCCACTaGCAGTCGCACGTTGGACCTCAGGCTGCGTCTGGG | + |
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Preference number: 6 (lower is better) Translates to: FLTQPTADAHLH*QSHVGPQAASG Trigger: CCCAGACGCAGCCTGAGGTCCAACGTGCGACTGGCAGTGGAGGTGCGCATCAGCCGTGGGCTGCGTGAGAAA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040498.12 ENSMUST00000173072.2 |
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