Pregenerated sensors for RNF34 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029474Ensembl transcript IDs: ENSMUST00000031434.8, ENSMUST00000198602.2
Found 103 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGGTGCACACCTTTAATCCCAGCACTCAGGAAGCAGACGGATCTCTaGGTTCTAGGCCAGCCAGGGCTACATATGTCTCATATAACTAAA | + |
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Preference number: 1 (lower is better) Translates to: WCTPLIPALRKQTDL*VLGQPGLHMSHITK Trigger: TTTAGTTATATGAGACATATGTAGCCCTGGCTGGCCTAGAACTCAGAGATCCGTCTGCTTCCTGAGTGCTGGGATTAAAGGTGTGCACCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR GCA 90 bp | ACCACCACTGCCCGGCTCCCATTTGATGTATTGCCTGTTAGGGTATaGCAGTTAAAATATGCAGCTTGCAGAAATGTTTATCCTCTGCTT | + |
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Preference number: 1 (lower is better) Translates to: TTTARLPFDVLPVRV*QLKYAACRNVYPLL Trigger: AAGCAGAGGATAAACATTTCTGCAAGCTGCATATTTTAACTGGCATACCCTAACAGGCAATACATCAAATGGGAGCCGGGCAGTGGTGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR GCA 90 bp | CCTCCTCCTCTCAAGTGTTCAGTTCTCACTTTAGTTGGTAAGTTCTaGATCCCTTGTTGTTTGGTGGTGTTTCCTAACCTTTCCCTGATG | + |
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Preference number: 1 (lower is better) Translates to: PPPLKCSVLTLVGKF*IPCCLVVFPNLSLM Trigger: CATCAGGGAAAGGTTAGGAAACACCACCAAACAACAAGGGATGCAGAACTTACCAACTAAAGTGAGAACTGAACACTTGAGAGGAGGAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR GCA 90 bp | TTCAAACACAAGCGAGGCACCAGTGCATCATGGGAATCTGATGTCTaGAGAGGAAGATACAGTGTGCTCAAATTATATTCTTTTCCGCTG | + |
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Preference number: 1 (lower is better) Translates to: FKHKRGTSASWESDV*RGRYSVLKLYSFPL Trigger: CAGCGGAAAAGAATATAATTTGAGCACACTGTATCTTCCTCTGCAGACATCAGATTCCCATGATGCACTGGTGCCTCGCTTGTGTTTGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR CCA 90 bp | CTCTCTATAGCTTTAAACCACATGTTACAAACAGGTGCTCCAAGGTaGAGCTTTACCATGGCTGGTAGTGGGAAGATCAAACCTTGTGAA | + |
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Preference number: 1 (lower is better) Translates to: LSIALNHMLQTGAPR*SFTMAGSGKIKPCE Trigger: TTCACAAGGTTTGATCTTCCCACTACCAGCCATGGTAAAGCTCCACCTTGGAGCACCTGTTTGTAACATGTGGTTTAAAGCTATAGAGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR TCA 90 bp | CTAGAGCTTCAAACACAAGCGAGGCACCAGTGCATCATGGGAATCTaGTGTCTGCAGAGGAAGATACAGTGTGCTCAAATTATATTCTTT | + |
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Preference number: 1 (lower is better) Translates to: LELQTQARHQCIMGI*CLQRKIQCAQIIFF Trigger: AAAGAATATAATTTGAGCACACTGTATCTTCCTCTGCAGACATCAGATTCCCATGATGCACTGGTGCCTCGCTTGTGTTTGAAGCTCTAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR TCA 90 bp | CCAAGGACTACATATGGAAGCTGGTTCTCTTTCCACTATGAGGCTTaGATTCTAGTCATGAGAATCATGGCATGTGCCTTTACCTACAGA | + |
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Preference number: 1 (lower is better) Translates to: PRTTYGSWFSFHYEA*ILVMRIMACAFTYR Trigger: TCTGTAGGTAAAGGCACATGCCATGATTCTCATGACTAGAATTCAAGCCTCATAGTGGAAAGAGAACCAGCTTCCATATGTAGTCCTTGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR TCA 90 bp | TGGAAGTCCAAGGACTACATATGGAAGCTGGTTCTCTTTCCACTATaGGGCTTGAATTCTAGTCATGAGAATCATGGCATGTGCCTTTAC | + |
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Preference number: 1 (lower is better) Translates to: WKSKDYIWKLVLFPL*GLNSSHENHGMCLY Trigger: GTAAAGGCACATGCCATGATTCTCATGACTAGAATTCAAGCCTCATAGTGGAAAGAGAACCAGCTTCCATATGTAGTCCTTGGACTTCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR TCA 90 bp | CACCTGTGGCTATCAGGAGCCATGGCTCTGACTCTGATACTGCTGTaGTACTTGTTTAAGTGTAAAATTGGTCTGAAGGTTTGTTGCATA | + |
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Preference number: 1 (lower is better) Translates to: HLWLSGAMALTLILL*YLFKCKIGLKVCCI Trigger: TATGCAACAAACCTTCAGACCAATTTTACACTTAAACAAGTATCACAGCAGTATCAGAGTCAGAGCCATGGCTCCTGATAGCCACAGGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR GCA 90 bp | CCAGTGCATCATGGGAATCTGATGTCTGCAGAGGAAGATACAGTGTaGTCAAATTATATTCTTTTCCGCTGTGAACCTTCAGAACCTTAC | + |
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Preference number: 1 (lower is better) Translates to: PVHHGNLMSAEEDTV*SNYILFRCEPSEPY Trigger: GTAAGGTTCTGAAGGTTCACAGCGGAAAAGAATATAATTTGAGCACACTGTATCTTCCTCTGCAGACATCAGATTCCCATGATGCACTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR GCA 90 bp | AGCATGTTGTGGATATGTGTAAAGTATAGTCCAGGTAAAACACTTTaGCAAGTTTCAATAGACTTCACCTCTCCCTCAGACTTGAGCCTT | + |
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Preference number: 1 (lower is better) Translates to: SMLWICVKYSPGKTL*QVSIDFTSPSDLSL Trigger: AAGGCTCAAGTCTGAGGGAGAGGTGAAGTCTATTGAAACTTGGCAAAGTGTTTTACCTGGACTATACTTTACACATATCCACAACATGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR CCA 90 bp | GCTGAGAGCCTACTGTGTATGTCAAGAAGCTACACAAGCATGTTGTaGATATGTGTAAAGTATAGTCCAGGTAAAACACTTTGCCAAGTT | + |
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Preference number: 1 (lower is better) Translates to: AESLLCMSRSYTSML*ICVKYSPGKTLCQV Trigger: AACTTGGCAAAGTGTTTTACCTGGACTATACTTTACACATATCCACAACATGCTTGTGTAGCTTCTTGACATACACAGTAGGCTCTCAGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR TCA 90 bp | TATATTATTATATTGTTAGCTAAGGTTTTAGCTAAAGCACGACTGTaGAGCAGCAGAGATGCTCTTCTGAAGAGAGGCACCTGTTCATGT | + |
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Preference number: 1 (lower is better) Translates to: YIIILLAKVLAKARL*SSRDALLKRGTCSC Trigger: ACATGAACAGGTGCCTCTCTTCAGAAGAGCATCTCTGCTGCTTCACAGTCGTGCTTTAGCTAAAACCTTAGCTAACAATATAATAATATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR-3UTR TCA 90 bp | TCTGCACCACCACTGCCCGGCTCCCATTTGATGTATTGCCTGTTAGGGTATGCCGCTAAAGCACGACTGTaGAGCAGCAGAGATGCTCTT | + |
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Preference number: 2 (lower is better) Translates to: SAPPLPGSHLMYCLLGYAAKARL*SSRDAL Trigger: AAGAGCATCTCTGCTGCTTCACAGTCGTGCTTTAGC...GGCATACCCTAACAGGCAATACATCAAATGGGAGCCGGGCAGTGGTGGTGCAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR-3UTR TCA 90 bp | TCTCATTTGCTGTATGCACCAAAAGGGCTCAAGAAAACCTCAGGGTGCCGGGCGGCAGAGATGCTCTTCTaGAGAGAGGCACCTGTTCAT | + |
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Preference number: 2 (lower is better) Translates to: SHLLYAPKGLKKTSGCRAAEMLF*REAPVH Trigger: ATGAACAGGTGCCTCTCTTCAGAAGAGCATCTCTGC...CGCCCGGCACCCTGAGGTTTTCTTGAGCCCTTTTGGTGCATACAGCAAATGAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR-3UTR CCA 90 bp | TCAAGTTCTCATTTGCTGTATGCACCAAAAGGGCTCAAGAAAACCTCAGGGTGCCAGGGAGATGGGTCATaGCACTGGCCAGGTTTCTGC | + |
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Preference number: 2 (lower is better) Translates to: SSSHLLYAPKGLKKTSGCQGDGS*HWPGFC Trigger: GCAGAAACCTGGCCAGTGCCATGACCCATCTCCCTG...GCACCCTGAGGTTTTCTTGAGCCCTTTTGGTGCATACAGCAAATGAGAACTTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR CAA 90 bp | TCTGCCTGCCTCTGCACCACCACTGCCCGGCTCCCATTTGATGTATaGCCTGTTAGGGTATGCCAGTTAAAATATGCAGCTTGCAGAAAT | + |
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Preference number: 2 (lower is better) Translates to: SACLCTTTARLPFDV*PVRVCQLKYAACRN Trigger: ATTTCTGCAAGCTGCATATTTTAACTGGCATACCCTAACAGGCAATACATCAAATGGGAGCCGGGCAGTGGTGGTGCAGAGGCAGGCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR-3UTR TCA 90 bp | TCTCATTTGCTGTATGCACCAAAAGGGCTCAAGAAAACCTCAGGGTGCCGGGCGTTCTGCAACTTAGGGTaGACTTTCTGTCCCCAGTTA | + |
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Preference number: 2 (lower is better) Translates to: SHLLYAPKGLKKTSGCRAFCNLG*TFCPQL Trigger: TAACTGGGGACAGAAAGTTCACCCTAAGTTGCAGAA...CGCCCGGCACCCTGAGGTTTTCTTGAGCCCTTTTGGTGCATACAGCAAATGAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR-3UTR TCA 90 bp | AGCATGTTTAACTGGATGCTGAGAGCCTACTGTGTATGTCAAGAAGCTACACAAAAGCAGACGGATCTCTaGGTTCTAGGCCAGCCAGGG | + |
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Preference number: 2 (lower is better) Translates to: SMFNWMLRAYCVCQEATQKQTDL*VLGQPG Trigger: CCCTGGCTGGCCTAGAACTCAGAGATCCGTCTGCTT...TTGTGTAGCTTCTTGACATACACAGTAGGCTCTCAGCATCCAGTTAAACATGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR-3UTR GCA 90 bp | GTGTTTTTATTATTTAGATTGCCAACTGTCCTTCAGGTAGGAGAGTTAACCTGTAAATCTGCCTGCCTCTaGACCACCACTGCCCGGCTC | + |
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Preference number: 2 (lower is better) Translates to: VFLLFRLPTVLQVGELTCKSACL*TTTARL Trigger: GAGCCGGGCAGTGGTGGTGCAGAGGCAGGCAGATTT...ACAGGTTAACTCTCCTACCTGAAGGACAGTTGGCAATCTAAATAATAAAAACAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR-3UTR CCA 90 bp | TCAAGTTCTCATTTGCTGTATGCACCAAAAGGGCTCAAGAAAACCTCAGGGTGCCTTAGTCTAAGGCCCTaGCAGTTGACTGTAGAATGT | + |
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Preference number: 2 (lower is better) Translates to: SSSHLLYAPKGLKKTSGCLSLRP*QLTVEC Trigger: ACATTCTACAGTCAACTGCCAGGGCCTTAGACTAAG...GCACCCTGAGGTTTTCTTGAGCCCTTTTGGTGCATACAGCAAATGAGAACTTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR-3UTR CCA 90 bp | AAGGCCCTGGCAGTTGACTGTAGAATGTCAGTTGTCTCCCAATTATGTTTAAATGATGGGTCATGGCACTaGCCAGGTTTCTGCAACTTA | + |
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Preference number: 2 (lower is better) Translates to: KALAVDCRMSVVSQLCLNDGSWH*PGFCNL Trigger: TAAGTTGCAGAAACCTGGCCAGTGCCATGACCCATC...ATTTAAACATAATTGGGAGACAACTGACATTCTACAGTCAACTGCCAGGGCCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR-3UTR CCA 90 bp | GTGTTTTTATTATTTAGATTGCCAACTGTCCTTCAGGTAGGAGAGTTAACCTGTACAGGTGCTCCAAGGTaGAGCTTTACCATGGCTGGT | + |
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Preference number: 2 (lower is better) Translates to: VFLLFRLPTVLQVGELTCTGAPR*SFTMAG Trigger: ACCAGCCATGGTAAAGCTCCACCTTGGAGCACCTGT...ACAGGTTAACTCTCCTACCTGAAGGACAGTTGGCAATCTAAATAATAAAAACAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR CAA 90 bp | TGTTCAGTTCTCACTTTAGTTGGTAAGTTCTGCATCCCTTGTTGTTaGGTGGTGTTTCCTAACCTTTCCCTGATGCAGTTTGACCTTTGT | + |
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Preference number: 2 (lower is better) Translates to: CSVLTLVGKFCIPCC*VVFPNLSLMQFDLC Trigger: ACAAAGGTCAAACTGCATCAGGGAAAGGTTAGGAAACACCACCAAACAACAAGGGATGCAGAACTTACCAACTAAAGTGAGAACTGAACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR-3UTR CCA 90 bp | GTGTTTTTATTATTTAGATTGCCAACTGTCCTTCAGGTAGGAGAGTTAACCTGTGGTGGAGCTTTACCATaGCTGGTAGTGGGAAGATCA | + |
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Preference number: 2 (lower is better) Translates to: VFLLFRLPTVLQVGELTCGGALP*LVVGRS Trigger: TGATCTTCCCACTACCAGCCATGGTAAAGCTCCACC...ACAGGTTAACTCTCCTACCTGAAGGACAGTTGGCAATCTAAATAATAAAAACAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR-3UTR TCA 90 bp | GTGTTTTTATTATTTAGATTGCCAACTGTCCTTCAGGTAGGAGAGTTAACCTGTTATTCTTTTCCGCTGTaGACCTTCAGAACCTTACCC | + |
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Preference number: 2 (lower is better) Translates to: VFLLFRLPTVLQVGELTCYSFPL*TFRTLP Trigger: GGGTAAGGTTCTGAAGGTTCACAGCGGAAAAGAATA...ACAGGTTAACTCTCCTACCTGAAGGACAGTTGGCAATCTAAATAATAAAAACAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR-3UTR TCA 90 bp | GTGTTTTTATTATTTAGATTGCCAACTGTCCTTCAGGTAGGAGAGTTAACCTGTTTCCACTATGAGGCTTaGATTCTAGTCATGAGAATC | + |
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Preference number: 2 (lower is better) Translates to: VFLLFRLPTVLQVGELTCFHYEA*ILVMRI Trigger: GATTCTCATGACTAGAATTCAAGCCTCATAGTGGAA...ACAGGTTAACTCTCCTACCTGAAGGACAGTTGGCAATCTAAATAATAAAAACAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR-3UTR TCA 90 bp | GTGTTTTTATTATTTAGATTGCCAACTGTCCTTCAGGTAGGAGAGTTAACCTGTTTCCCTGATGCAGTTTaGCCTTTGTTGGATTTATAT | + |
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Preference number: 2 (lower is better) Translates to: VFLLFRLPTVLQVGELTCFPDAV*PLLDLY Trigger: ATATAAATCCAACAAAGGTCAAACTGCATCAGGGAA...ACAGGTTAACTCTCCTACCTGAAGGACAGTTGGCAATCTAAATAATAAAAACAC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR TCA 72 bp | CCTTTAATCCCAGCACTCAGGAAGCAGACGGATCTCTaGGTTCTAGGCCAGCCAGGGCTACATATGTCTCAT | + |
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Preference number: 3 (lower is better) Translates to: PLIPALRKQTDL*VLGQPGLHMSH Trigger: ATGAGACATATGTAGCCCTGGCTGGCCTAGAACTCAGAGATCCGTCTGCTTCCTGAGTGCTGGGATTAAAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR TCA 72 bp | CAAACACAAGCGAGGCACCAGTGCATCATGGGAATCTaGTGTCTGCAGAGGAAGATACAGTGTGCTCAAATT | + |
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Preference number: 3 (lower is better) Translates to: QTQARHQCIMGI*CLQRKIQCAQI Trigger: AATTTGAGCACACTGTATCTTCCTCTGCAGACATCAGATTCCCATGATGCACTGGTGCCTCGCTTGTGTTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR CCA 72 bp | TGTTACAAACAGGTGCTCCAAGGTGGAGCTTTACCATaGCTGGTAGTGGGAAGATCAAACCTTGTGAATGAA | + |
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Preference number: 3 (lower is better) Translates to: CYKQVLQGGALP*LVVGRSNLVNE Trigger: TTCATTCACAAGGTTTGATCTTCCCACTACCAGCCATGGTAAAGCTCCACCTTGGAGCACCTGTTTGTAACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR TCA 72 bp | ATATTGTTAGCTAAGGTTTTAGCTAAAGCACGACTGTaGAGCAGCAGAGATGCTCTTCTGAAGAGAGGCACC | + |
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Preference number: 3 (lower is better) Translates to: ILLAKVLAKARL*SSRDALLKRGT Trigger: GGTGCCTCTCTTCAGAAGAGCATCTCTGCTGCTTCACAGTCGTGCTTTAGCTAAAACCTTAGCTAACAATAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR GCA 72 bp | AAGCGAGGCACCAGTGCATCATGGGAATCTGATGTCTaGAGAGGAAGATACAGTGTGCTCAAATTATATTCT | + |
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Preference number: 3 (lower is better) Translates to: KRGTSASWESDV*RGRYSVLKLYS Trigger: AGAATATAATTTGAGCACACTGTATCTTCCTCTGCAGACATCAGATTCCCATGATGCACTGGTGCCTCGCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR GCA 72 bp | GCCCGGCTCCCATTTGATGTATTGCCTGTTAGGGTATaGCAGTTAAAATATGCAGCTTGCAGAAATGTTTAT | + |
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Preference number: 3 (lower is better) Translates to: ARLPFDVLPVRV*QLKYAACRNVY Trigger: ATAAACATTTCTGCAAGCTGCATATTTTAACTGGCATACCCTAACAGGCAATACATCAAATGGGAGCCGGGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR TCA 72 bp | ACATATGGAAGCTGGTTCTCTTTCCACTATGAGGCTTaGATTCTAGTCATGAGAATCATGGCATGTGCCTTT | + |
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Preference number: 3 (lower is better) Translates to: TYGSWFSFHYEA*ILVMRIMACAF Trigger: AAAGGCACATGCCATGATTCTCATGACTAGAATTCAAGCCTCATAGTGGAAAGAGAACCAGCTTCCATATGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR TCA 72 bp | AAGGACTACATATGGAAGCTGGTTCTCTTTCCACTATaGGGCTTGAATTCTAGTCATGAGAATCATGGCATG | + |
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Preference number: 3 (lower is better) Translates to: KDYIWKLVLFPL*GLNSSHENHGM Trigger: CATGCCATGATTCTCATGACTAGAATTCAAGCCTCATAGTGGAAAGAGAACCAGCTTCCATATGTAGTCCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR TCA 72 bp | TACTTCTCTGAACCTCCAAACGAGACAGCTGCATCCTaGTATTTAGAAAAGTCATCATCTCCCCTAAGAACT | + |
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Preference number: 3 (lower is better) Translates to: YFSEPPNETAAS*YLEKSSSPLRT Trigger: AGTTCTTAGGGGAGATGATGACTTTTCTAAATATCAGGATGCAGCTGTCTCGTTTGGAGGTTCAGAGAAGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR TCA 72 bp | CTATCAGGAGCCATGGCTCTGACTCTGATACTGCTGTaGTACTTGTTTAAGTGTAAAATTGGTCTGAAGGTT | + |
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Preference number: 3 (lower is better) Translates to: LSGAMALTLILL*YLFKCKIGLKV Trigger: AACCTTCAGACCAATTTTACACTTAAACAAGTATCACAGCAGTATCAGAGTCAGAGCCATGGCTCCTGATAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR GCA 72 bp | CATGGGAATCTGATGTCTGCAGAGGAAGATACAGTGTaGTCAAATTATATTCTTTTCCGCTGTGAACCTTCA | + |
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Preference number: 3 (lower is better) Translates to: HGNLMSAEEDTV*SNYILFRCEPS Trigger: TGAAGGTTCACAGCGGAAAAGAATATAATTTGAGCACACTGTATCTTCCTCTGCAGACATCAGATTCCCATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR GCA 72 bp | GTAGTGGGAAGATCAAACCTTGTGAATGAATATACCTaGTATGGCAAATCTAGAGCTTCAAACACAAGCGAG | + |
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Preference number: 3 (lower is better) Translates to: VVGRSNLVNEYT*YGKSRASNTSE Trigger: CTCGCTTGTGTTTGAAGCTCTAGATTTGCCATAGCAGGTATATTCATTCACAAGGTTTGATCTTCCCACTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR GCA 72 bp | CTCAAGTGTTCAGTTCTCACTTTAGTTGGTAAGTTCTaGATCCCTTGTTGTTTGGTGGTGTTTCCTAACCTT | + |
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Preference number: 3 (lower is better) Translates to: LKCSVLTLVGKF*IPCCLVVFPNL Trigger: AAGGTTAGGAAACACCACCAAACAACAAGGGATGCAGAACTTACCAACTAAAGTGAGAACTGAACACTTGAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR TCA 72 bp | TTGAGCCTTTACACTCAGGAGGGTTTGCTCCAAGCATaGGCTCTTGTATTCTACTTACATAGGTCTAATTTA | + |
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Preference number: 3 (lower is better) Translates to: LSLYTQEGLLQA*ALVFYLHRSNL Trigger: TAAATTAGACCTATGTAAGTAGAATACAAGAGCTCATGCTTGGAGCAAACCCTCCTGAGTGTAAAGGCTCAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR GCA 72 bp | TGGATATGTGTAAAGTATAGTCCAGGTAAAACACTTTaGCAAGTTTCAATAGACTTCACCTCTCCCTCAGAC | + |
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Preference number: 3 (lower is better) Translates to: WICVKYSPGKTL*QVSIDFTSPSD Trigger: GTCTGAGGGAGAGGTGAAGTCTATTGAAACTTGGCAAAGTGTTTTACCTGGACTATACTTTACACATATCCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| 3UTR CCA 72 bp | CTACTGTGTATGTCAAGAAGCTACACAAGCATGTTGTaGATATGTGTAAAGTATAGTCCAGGTAAAACACTT | + |
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Preference number: 3 (lower is better) Translates to: LLCMSRSYTSML*ICVKYSPGKTL Trigger: AAGTGTTTTACCTGGACTATACTTTACACATATCCACAACATGCTTGTGTAGCTTCTTGACATACACAGTAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| CDS-3UTR CCA 90 bp | CAGCAGAACCTGGGAAAGCCGTGTGTCCACAGGGAGATGGGTCATGGCACTGGCTCCATGAGCTCTCCCTaGAAGGAGGACACAGTAGCA | + |
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Preference number: 4 (lower is better) Translates to: QQNLGKPCVHREMGHGTGSMSSP*KEDTVA Trigger: TGCTACTGTGTCCTCCTTCCAGGGAGAGCTCATGGA...GCCAGTGCCATGACCCATCTCCCTGTGGACACACGGCTTTCCCAGGTTCTGCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| CDS-3UTR GCA 90 bp | TCTGCACCACCACTGCCCGGCTCCCATTTGATGTATTGCCTGTTAGGGTATGCCGGGTCCTTCAGTAGCTaGTGGTGGGTAGGTGGGGAA | + |
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Preference number: 4 (lower is better) Translates to: SAPPLPGSHLMYCLLGYAGSFSS*WWVGGE Trigger: TTCCCCACCTACCCACCAGCAGCTACTGAAGGACCC...GGCATACCCTAACAGGCAATACATCAAATGGGAGCCGGGCAGTGGTGGTGCAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| CDS-3UTR CCA 90 bp | TCTCATTTGCTGTATGCACCAAAAGGGCTCAAGAAAACCTCAGGGTGCCGGGCGGGAAATCCCGCCTGCTaGCCTCGGACAGCTCCAGTT | + |
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Preference number: 4 (lower is better) Translates to: SHLLYAPKGLKKTSGCRAGNPAC*PRTAPV Trigger: AACTGGAGCTGTCCGAGGCCAGCAGGCGGGATTTCC...CGCCCGGCACCCTGAGGTTTTCTTGAGCCCTTTTGGTGCATACAGCAAATGAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| CDS-3UTR CCA 90 bp | TCTCATTTGCTGTATGCACCAAAAGGGCTCAAGAAAACCTCAGGGTGCCGGGCGCTGCTGGTGGGTAGGTaGGGAAGTCAGAGCTCGGTG | + |
|
Preference number: 4 (lower is better) Translates to: SHLLYAPKGLKKTSGCRALLVGR*GSQSSV Trigger: CACCGAGCTCTGACTTCCCCACCTACCCACCAGCAG...CGCCCGGCACCCTGAGGTTTTCTTGAGCCCTTTTGGTGCATACAGCAAATGAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
||
| CDS-3UTR TCA 90 bp | TCTCATTTGCTGTATGCACCAAAAGGGCTCAAGAAAACCTCAGGGTGCCGGGCGCTGTGCCAGGACTTCTaGTCTGAAGGCGCCATCTCT | + |
|
Preference number: 4 (lower is better) Translates to: SHLLYAPKGLKKTSGCRALCQDF*SEGAIS Trigger: AGAGATGGCGCCTTCAGATCAGAAGTCCTGGCACAG...CGCCCGGCACCCTGAGGTTTTCTTGAGCCCTTTTGGTGCATACAGCAAATGAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| CDS-3UTR TCA 90 bp | AGGGAAGACAGGCGAGTGAGTGGCTTCCACACCCACACTGAACAGTTTGGCTTCCTTTGTACAGCCGGTTaGCTTTCTCTACCAGCTCCC | + |
|
Preference number: 4 (lower is better) Translates to: REDRRVSGFHTHTEQFGFLCTAG*LSLPAP Trigger: GGGAGCTGGTAGAGAAAGTCAACCGGCTGTACAAAG...GAAGCCAAACTGTTCAGTGTGGGTGTGGAAGCCACTCACTCGCCTGTCTTCCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
||
| CDS-3UTR TCA 90 bp | TCTGCACCACCACTGCCCGGCTCCCATTTGATGTATTGCCTGTTAGGGTATGCCGCAGGACACAGTCAATaGCCGCATCCATGCAGATTC | + |
|
Preference number: 4 (lower is better) Translates to: SAPPLPGSHLMYCLLGYAAGHSQ*PHPCRF Trigger: GAATCTGCATGGATGCGGTCATTGACTGTGTCCTGC...GGCATACCCTAACAGGCAATACATCAAATGGGAGCCGGGCAGTGGTGGTGCAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| CDS-3UTR GCA 90 bp | CAGCAGAACCTGGGAAAGCCGTGTGTCCACAGGGAGATGGGTCATGGCACTGGCAGCAGAAATCCTTCTTaGAGTCACAGCAGACATGCT | + |
|
Preference number: 4 (lower is better) Translates to: QQNLGKPCVHREMGHGTGSRNPS*SHSRHA Trigger: AGCATGTCTGCTGTGACTGCAAGAAGGATTTCTGCT...GCCAGTGCCATGACCCATCTCCCTGTGGACACACGGCTTTCCCAGGTTCTGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
||
| CDS-3UTR CCA 90 bp | AGGGAAGACAGGCGAGTGAGTGGCTTCCACACCCACACTGAACAGTTTGGCTTCAGGATCTCCTTCAGCTaGCGCACACTCATCCCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: REDRRVSGFHTHTEQFGFRISFS*RTLIPS Trigger: AGAAGGGATGAGTGTGCGCCAGCTGAAGGAGATCCT...GAAGCCAAACTGTTCAGTGTGGGTGTGGAAGCCACTCACTCGCCTGTCTTCCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| CDS-3UTR TCA 90 bp | AGGGAAGACAGGCGAGTGAGTGGCTTCCACACCCACACTGAACAGTTTGGCTTCGTCTCTTGTAGTAGGTaGCAAGTAGAACATCTGCGG | + |
|
Preference number: 4 (lower is better) Translates to: REDRRVSGFHTHTEQFGFVSCSR*QVEHLR Trigger: CCGCAGATGTTCTACTTGTCACCTACTACAAGAGAC...GAAGCCAAACTGTTCAGTGTGGGTGTGGAAGCCACTCACTCGCCTGTCTTCCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
||
| CDS-3UTR TCA 90 bp | TCAAGTTCTCATTTGCTGTATGCACCAAAAGGGCTCAAGAAAACCTCAGGGTGCCGCCATCTCTGTCCATaGGCTCTCCCTGGAAGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: SSSHLLYAPKGLKKTSGCRHLCP*ALPGRR Trigger: CCTCCTTCCAGGGAGAGCTCATGGACAGAGATGGCG...GCACCCTGAGGTTTTCTTGAGCCCTTTTGGTGCATACAGCAAATGAGAACTTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
||
| CDS-3UTR CCA 90 bp | TCTCATTTGCTGTATGCACCAAAAGGGCTCAAGAAAACCTCAGGGTGCCGGGCGACGACAAGTGTCGGTTaGTATGTTTCTGAGGAGGAG | + |
|
Preference number: 4 (lower is better) Translates to: SHLLYAPKGLKKTSGCRATTSVG*YVSEEE Trigger: CTCCTCCTCAGAAACATACCAACCGACACTTGTCGT...CGCCCGGCACCCTGAGGTTTTCTTGAGCCCTTTTGGTGCATACAGCAAATGAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| CDS-3UTR TCA 90 bp | TCAAGTTCTCATTTGCTGTATGCACCAAAAGGGCTCAAGAAAACCTCAGGGTGCCAGCAGCCCACAGCATaGAGCCCACATAGAAGTAGC | + |
|
Preference number: 4 (lower is better) Translates to: SSSHLLYAPKGLKKTSGCQQPTA*SPHRSS Trigger: GCTACTTCTATGTGGGCTTCATGCTGTGGGCTGCTG...GCACCCTGAGGTTTTCTTGAGCCCTTTTGGTGCATACAGCAAATGAGAACTTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
||
| 3UTR CAA 72 bp | CTCTGCACCACCACTGCCCGGCTCCCATTTGATGTATaGCCTGTTAGGGTATGCCAGTTAAAATATGCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: LCTTTARLPFDV*PVRVCQLKYAA Trigger: AGCTGCATATTTTAACTGGCATACCCTAACAGGCAATACATCAAATGGGAGCCGGGCAGTGGTGGTGCAGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
||
| CDS-3UTR GCA 90 bp | AAGGCCCTGGCAGTTGACTGTAGAATGTCAGTTGTCTCCCAATTATGTTTAAATGTGCAGGTGACCATGTaGCCGCACTCCAGCAGGACA | + |
|
Preference number: 4 (lower is better) Translates to: KALAVDCRMSVVSQLCLNVQVTM*PHSSRT Trigger: TGTCCTGCTGGAGTGCGGGCACATGGTCACCTGCAC...ATTTAAACATAATTGGGAGACAACTGACATTCTACAGTCAACTGCCAGGGCCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
||
| 3UTR CAA 72 bp | TGCCAAGTTTCAATAGACTTCACCTCTCCCTCAGACTaGAGCCTTTACACTCAGGAGGGTTTGCTCCAAGCA | + |
|
Preference number: 4 (lower is better) Translates to: CQVSIDFTSPSD*SLYTQEGLLQA Trigger: TGCTTGGAGCAAACCCTCCTGAGTGTAAAGGCTCAAGTCTGAGGGAGAGGTGAAGTCTATTGAAACTTGGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
||
| CDS-3UTR CCA 90 bp | AGCATGTTTAACTGGATGCTGAGAGCCTACTGTGTATGTCAAGAAGCTACACAATCCTTCAGTAGCTGCTaGTGGGTAGGTGGGGAAGTC | + |
|
Preference number: 4 (lower is better) Translates to: SMFNWMLRAYCVCQEATQSFSSC*WVGGEV Trigger: GACTTCCCCACCTACCCACCAGCAGCTACTGAAGGA...TTGTGTAGCTTCTTGACATACACAGTAGGCTCTCAGCATCCAGTTAAACATGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
||
| CDS-3UTR CCA 90 bp | AGCATGTTTAACTGGATGCTGAGAGCCTACTGTGTATGTCAAGAAGCTACACAACTGCGGAGGTTTTCTTaGGAGACTGAGCAGAGGGAG | + |
|
Preference number: 4 (lower is better) Translates to: SMFNWMLRAYCVCQEATQLRRFS*ETEQRE Trigger: CTCCCTCTGCTCAGTCTCCCAAGAAAACCTCCGCAG...TTGTGTAGCTTCTTGACATACACAGTAGGCTCTCAGCATCCAGTTAAACATGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| CDS-3UTR TCA 90 bp | GTGTTTTTATTATTTAGATTGCCAACTGTCCTTCAGGTAGGAGAGTTAACCTGTTTTAGTCGCATCAACTaGGGGCGCTGGAAGGCCGTC | + |
|
Preference number: 4 (lower is better) Translates to: VFLLFRLPTVLQVGELTCFSRIN*GRWKAV Trigger: GACGGCCTTCCAGCGCCCTCAGTTGATGCGACTAAA...ACAGGTTAACTCTCCTACCTGAAGGACAGTTGGCAATCTAAATAATAAAAACAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
||
| CDS-3UTR GCA 90 bp | AAGGCCCTGGCAGTTGACTGTAGAATGTCAGTTGTCTCCCAATTATGTTTAAATGCTCGAACCACATACTaGCTGCAGATGGGACACTCA | + |
|
Preference number: 4 (lower is better) Translates to: KALAVDCRMSVVSQLCLNARTTY*LQMGHS Trigger: TGAGTGTCCCATCTGCAGGCAGTATGTGGTTCGAGC...ATTTAAACATAATTGGGAGACAACTGACATTCTACAGTCAACTGCCAGGGCCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
||
| CDS-3UTR TCA 90 bp | AAGGCCCTGGCAGTTGACTGTAGAATGTCAGTTGTCTCCCAATTATGTTTAAATGTTTTCTTGGGAGACTaGGCAGAGGGAGCAGAAATC | + |
|
Preference number: 4 (lower is better) Translates to: KALAVDCRMSVVSQLCLNVFLGD*AEGAEI Trigger: GATTTCTGCTCCCTCTGCTCAGTCTCCCAAGAAAAC...ATTTAAACATAATTGGGAGACAACTGACATTCTACAGTCAACTGCCAGGGCCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| CDS-3UTR CCA 90 bp | AAGGCCCTGGCAGTTGACTGTAGAATGTCAGTTGTCTCCCAATTATGTTTAAATCGGTGTAAATCTGAATaGGCCAGTGCTTCCCGGAAA | + |
|
Preference number: 4 (lower is better) Translates to: KALAVDCRMSVVSQLCLNRCKSE*ASASRK Trigger: TTTCCGGGAAGCACTGGCCCATTCAGATTTACACCG...ATTTAAACATAATTGGGAGACAACTGACATTCTACAGTCAACTGCCAGGGCCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
||
| CDS-3UTR CCA 90 bp | GTGTTTTTATTATTTAGATTGCCAACTGTCCTTCAGGTAGGAGAGTTAACCTGTGAGCCTAGTCCACGGTaGCACAGTACTAGATCCACC | + |
|
Preference number: 4 (lower is better) Translates to: VFLLFRLPTVLQVGELTCEPSPR*HSTRST Trigger: GGTGGATCTAGTACTGTGCCACCGTGGACTAGGCTC...ACAGGTTAACTCTCCTACCTGAAGGACAGTTGGCAATCTAAATAATAAAAACAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| CDS-3UTR CCA 90 bp | AAGGCCCTGGCAGTTGACTGTAGAATGTCAGTTGTCTCCCAATTATGTTTAAATCATACTGCCTGCAGATaGGACACTCACTCATTCGCT | + |
|
Preference number: 4 (lower is better) Translates to: KALAVDCRMSVVSQLCLNHTACR*DTHSFA Trigger: AGCGAATGAGTGAGTGTCCCATCTGCAGGCAGTATG...ATTTAAACATAATTGGGAGACAACTGACATTCTACAGTCAACTGCCAGGGCCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
||
| 3UTR CAA 72 bp | CTCACTTTAGTTGGTAAGTTCTGCATCCCTTGTTGTTaGGTGGTGTTTCCTAACCTTTCCCTGATGCAGTTT | + |
|
Preference number: 4 (lower is better) Translates to: LTLVGKFCIPCC*VVFPNLSLMQF Trigger: AAACTGCATCAGGGAAAGGTTAGGAAACACCACCAAACAACAAGGGATGCAGAACTTACCAACTAAAGTGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| CDS-3UTR TCA 90 bp | AAGGCCCTGGCAGTTGACTGTAGAATGTCAGTTGTCTCCCAATTATGTTTAAATAACAGCCAGAATAGTTaGCAAAATTCCGAGCCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: KALAVDCRMSVVSQLCLNNSQNS*QNSEPG Trigger: TCCTGGCTCGGAATTTTGTCAACTATTCTGGCTGTT...ATTTAAACATAATTGGGAGACAACTGACATTCTACAGTCAACTGCCAGGGCCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| CDS-3UTR GCA 90 bp | AGCATGTTTAACTGGATGCTGAGAGCCTACTGTGTATGTCAAGAAGCTACACAAAAAGCCCACAGGCTTTaGAAACTATATTGGGTCCTT | + |
|
Preference number: 4 (lower is better) Translates to: SMFNWMLRAYCVCQEATQKAHRL*KLYWVL Trigger: AAGGACCCAATATAGTTTGCAAAGCCTGTGGGCTTT...TTGTGTAGCTTCTTGACATACACAGTAGGCTCTCAGCATCCAGTTAAACATGCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| CDS-3UTR GCA 90 bp | GTGTTTTTATTATTTAGATTGCCAACTGTCCTTCAGGTAGGAGAGTTAACCTGTCTGAGGAGGAGATACTaGCGCAGGTCCTTCACTTTT | + |
|
Preference number: 4 (lower is better) Translates to: VFLLFRLPTVLQVGELTCLRRRY*RRSFTF Trigger: AAAAGTGAAGGACCTGCGGCAGTATCTCCTCCTCAG...ACAGGTTAACTCTCCTACCTGAAGGACAGTTGGCAATCTAAATAATAAAAACAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| CDS-3UTR TCA 90 bp | AAGGCCCTGGCAGTTGACTGTAGAATGTCAGTTGTCTCCCAATTATGTTTAAATGGGAGGAGTGTAATTTaGAAAGAGGGACTGTGTAAA | + |
|
Preference number: 4 (lower is better) Translates to: KALAVDCRMSVVSQLCLNGRSVI*KEGLCK Trigger: TTTACACAGTCCCTCTTTTCAAATTACACTCCTCCC...ATTTAAACATAATTGGGAGACAACTGACATTCTACAGTCAACTGCCAGGGCCTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| CDS-3UTR GCA 90 bp | AGCATGTTTAACTGGATGCTGAGAGCCTACTGTGTATGTCAAGAAGCTACACAACAGTCACAGCAGACATaGTTCTTTCTAAAGACTGAA | + |
|
Preference number: 4 (lower is better) Translates to: SMFNWMLRAYCVCQEATQQSQQT*FFLKTE Trigger: TTCAGTCTTTAGAAAGAAGCATGTCTGCTGTGACTG...TTGTGTAGCTTCTTGACATACACAGTAGGCTCTCAGCATCCAGTTAAACATGCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| CDS-3UTR TCA 90 bp | AGCATGTTTAACTGGATGCTGAGAGCCTACTGTGTATGTCAAGAAGCTACACAAATCATCTGTGTTTGCTaGAGCTATTTCACTTTGTAC | + |
|
Preference number: 4 (lower is better) Translates to: SMFNWMLRAYCVCQEATQIICVC*SYFTLY Trigger: GTACAAAGTGAAATAGCTTCAGCAAACACAGATGAT...TTGTGTAGCTTCTTGACATACACAGTAGGCTCTCAGCATCCAGTTAAACATGCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| CDS-3UTR TCA 90 bp | AAGGCCCTGGCAGTTGACTGTAGAATGTCAGTTGTCTCCCAATTATGTTTAAATCATCCGCTCACCATATaGCTTTTGGTTTTCTTCATT | + |
|
Preference number: 4 (lower is better) Translates to: KALAVDCRMSVVSQLCLNHPLTI*LLVFFI Trigger: AATGAAGAAAACCAAAAGTCATATGGTGAGCGGATG...ATTTAAACATAATTGGGAGACAACTGACATTCTACAGTCAACTGCCAGGGCCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| CDS-3UTR GCA 90 bp | GTGTTTTTATTATTTAGATTGCCAACTGTCCTTCAGGTAGGAGAGTTAACCTGTAGACAGGGAAGCTCTTaGTTTCTTTTTAGAGAGCCC | + |
|
Preference number: 4 (lower is better) Translates to: VFLLFRLPTVLQVGELTCRQGSS*FLFREP Trigger: GGGCTCTCTAAAAAGAAAGCAAGAGCTTCCCTGTCT...ACAGGTTAACTCTCCTACCTGAAGGACAGTTGGCAATCTAAATAATAAAAACAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| CDS CCA 90 bp | TGCTGGTGGGTAGGTGGGGAAGTCAGAGCTCGGTGTAAATCTGAATaGGCCAGTGCTTCCCGGAAATCCCGCCTGCTGGCCTCGGACAGC | + |
|
Preference number: 5 (lower is better) Translates to: CWWVGGEVRARCKSE*ASASRKSRLLASDS Trigger: GCTGTCCGAGGCCAGCAGGCGGGATTTCCGGGAAGCACTGGCCCATTCAGATTTACACCGAGCTCTGACTTCCCCACCTACCCACCAGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
||
| CDS GCA 90 bp | CTCGGTGTAAATCTGAATGGGCCAGTGCTTCCCGGAAATCCCGCCTaGTGGCCTCGGACAGCTCCAGTTCCCATGACTTCATTCAGCAGC | + |
|
Preference number: 5 (lower is better) Translates to: LGVNLNGPVLPGNPA*WPRTAPVPMTSFSS Trigger: GCTGCTGAATGAAGTCATGGGAACTGGAGCTGTCCGAGGCCAGCAGGCGGGATTTCCGGGAAGCACTGGCCCATTCAGATTTACACCGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| CDS CCA 90 bp | GGTGTAAATCTGAATGGGCCAGTGCTTCCCGGAAATCCCGCCTGCTaGCCTCGGACAGCTCCAGTTCCCATGACTTCATTCAGCAGCCCA | + |
|
Preference number: 5 (lower is better) Translates to: GVNLNGPVLPGNPAC*PRTAPVPMTSFSSP Trigger: TGGGCTGCTGAATGAAGTCATGGGAACTGGAGCTGTCCGAGGCCAGCAGGCGGGATTTCCGGGAAGCACTGGCCCATTCAGATTTACACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| CDS-3UTR CAA 90 bp | CAGCAGAACCTGGGAAAGCCGTGTGTCCACAGGGAGATGGGTCATGGCACTGGCGAGCAGAAATCCTTCTaGCAGTCACAGCAGACATGC | + |
|
Preference number: 5 (lower is better) Translates to: QQNLGKPCVHREMGHGTGEQKSF*QSQQTC Trigger: GCATGTCTGCTGTGACTGCAAGAAGGATTTCTGCTC...GCCAGTGCCATGACCCATCTCCCTGTGGACACACGGCTTTCCCAGGTTCTGCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
||
| CDS CCA 90 bp | CCCACAGGCTTTGCAAACTATATTGGGTCCTTCAGTAGCTGCTGGTaGGTAGGTGGGGAAGTCAGAGCTCGGTGTAAATCTGAATGGGCC | + |
|
Preference number: 5 (lower is better) Translates to: PTGFANYIGSFSSCW*VGGEVRARCKSEWA Trigger: GGCCCATTCAGATTTACACCGAGCTCTGACTTCCCCACCTACCCACCAGCAGCTACTGAAGGACCCAATATAGTTTGCAAAGCCTGTGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| CDS CCA 90 bp | TTCAGGCTACTTGAGTCCAGGTCATCCCCTGAGCCTAGTCCACGGTaGCACAGTACTAGATCCACCAAGTCTTCCTTCTCACGACAAGTG | + |
|
Preference number: 5 (lower is better) Translates to: FRLLESRSSPEPSPR*HSTRSTKSSFSRQV Trigger: CACTTGTCGTGAGAAGGAAGACTTGGTGGATCTAGTACTGTGCCACCGTGGACTAGGCTCAGGGGATGACCTGGACTCAAGTAGCCTGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031434.8 ENSMUST00000198602.2 |
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| CDS-3UTR CAA 90 bp | TCTCATTTGCTGTATGCACCAAAAGGGCTCAAGAAAACCTCAGGGTGCCGGGCGTCTTTGTACAGCCGGTaGACTTTCTCTACCAGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: SHLLYAPKGLKKTSGCRASLYSR*TFSTSS Trigger: GGAGCTGGTAGAGAAAGTCAACCGGCTGTACAAAGA...CGCCCGGCACCCTGAGGTTTTCTTGAGCCCTTTTGGTGCATACAGCAAATGAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| CDS GCA 90 bp | CGAAAGCCCACAGGCTTTGCAAACTATATTGGGTCCTTCAGTAGCTaGTGGTGGGTAGGTGGGGAAGTCAGAGCTCGGTGTAAATCTGAA | + |
|
Preference number: 5 (lower is better) Translates to: RKPTGFANYIGSFSS*WWVGGEVRARCKSE Trigger: TTCAGATTTACACCGAGCTCTGACTTCCCCACCTACCCACCAGCAGCTACTGAAGGACCCAATATAGTTTGCAAAGCCTGTGGGCTTTCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
||
| CDS CCA 90 bp | AAGCCCACAGGCTTTGCAAACTATATTGGGTCCTTCAGTAGCTGCTaGTGGGTAGGTGGGGAAGTCAGAGCTCGGTGTAAATCTGAATGG | + |
|
Preference number: 5 (lower is better) Translates to: KPTGFANYIGSFSSC*WVGGEVRARCKSEW Trigger: CCATTCAGATTTACACCGAGCTCTGACTTCCCCACCTACCCACCAGCAGCTACTGAAGGACCCAATATAGTTTGCAAAGCCTGTGGGCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
||
| CDS TCA 90 bp | CCACCAAGTCTTCCTTCTCACGACAAGTGTCGGTTGGTATGTTTCTaGGGAGGAGATACTGCCGCAGGTCCTTCACTTTTAGTCGCATCA | + |
|
Preference number: 5 (lower is better) Translates to: PPSLPSHDKCRLVCF*GGDTAAGPSLLVAS Trigger: TGATGCGACTAAAAGTGAAGGACCTGCGGCAGTATCTCCTCCTCAGAAACATACCAACCGACACTTGTCGTGAGAAGGAAGACTTGGTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031434.8 ENSMUST00000198602.2 |
||
| CDS-3UTR CAA 90 bp | TCAAGTTCTCATTTGCTGTATGCACCAAAAGGGCTCAAGAAAACCTCAGGGTGCCTGTTCCTCCTCCTCTaGTTCGTCGTCGTCATCTTC | + |
|
Preference number: 5 (lower is better) Translates to: SSSHLLYAPKGLKKTSGCLFLLL*FVVVIF Trigger: GAAGATGACGACGACGAACAAGAGGAGGAGGAACAG...GCACCCTGAGGTTTTCTTGAGCCCTTTTGGTGCATACAGCAAATGAGAACTTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
||
| CDS TCA 90 bp | ACCGCATCCATGCAGATTCGGCACAGGCTGTCATCTTCCTCATCCTaGAGTTGCATCCGCTCACCATATGACTTTTGGTTTTCTTCATTC | + |
|
Preference number: 5 (lower is better) Translates to: TASMQIRHRLSSSSS*SCIRSPYDFWFSSF Trigger: GAATGAAGAAAACCAAAAGTCATATGGTGAGCGGATGCAACTTCAGGATGAGGAAGATGACAGCCTGTGCCGAATCTGCATGGATGCGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
||
| CDS-3UTR CAA 90 bp | TCTGCACCACCACTGCCCGGCTCCCATTTGATGTATTGCCTGTTAGGGTATGCCCATCATCATCTGTGTTaGCTGAAGCTATTTCACTTT | + |
|
Preference number: 5 (lower is better) Translates to: SAPPLPGSHLMYCLLGYAHHHLC*LKLFHF Trigger: AAAGTGAAATAGCTTCAGCAAACACAGATGATGATG...GGCATACCCTAACAGGCAATACATCAAATGGGAGCCGGGCAGTGGTGGTGCAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
||
| CDS-3UTR CAA 90 bp | GTGTTTTTATTATTTAGATTGCCAACTGTCCTTCAGGTAGGAGAGTTAACCTGTGAAAGCCCACAGGCTTaGCAAACTATATTGGGTCCT | + |
|
Preference number: 5 (lower is better) Translates to: VFLLFRLPTVLQVGELTCESPQA*QTILGP Trigger: AGGACCCAATATAGTTTGCAAAGCCTGTGGGCTTTC...ACAGGTTAACTCTCCTACCTGAAGGACAGTTGGCAATCTAAATAATAAAAACAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
||
| CDS-3UTR CAA 90 bp | AGCATGTTTAACTGGATGCTGAGAGCCTACTGTGTATGTCAAGAAGCTACACAATTTTCTTCATTCTCTTaGTACAGCCGGTTGACTTTC | + |
|
Preference number: 5 (lower is better) Translates to: SMFNWMLRAYCVCQEATQFSSFS*YSRLTF Trigger: GAAAGTCAACCGGCTGTACAAAGAGAATGAAGAAAA...TTGTGTAGCTTCTTGACATACACAGTAGGCTCTCAGCATCCAGTTAAACATGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
||
| CDS CCA 72 bp | CTGAATGGGCCAGTGCTTCCCGGAAATCCCGCCTGCTaGCCTCGGACAGCTCCAGTTCCCATGACTTCATTC | + |
|
Preference number: 6 (lower is better) Translates to: LNGPVLPGNPAC*PRTAPVPMTSF Trigger: GAATGAAGTCATGGGAACTGGAGCTGTCCGAGGCCAGCAGGCGGGATTTCCGGGAAGCACTGGCCCATTCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
||
| CDS CCA 72 bp | GTAGGTGGGGAAGTCAGAGCTCGGTGTAAATCTGAATaGGCCAGTGCTTCCCGGAAATCCCGCCTGCTGGCC | + |
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Preference number: 6 (lower is better) Translates to: VGGEVRARCKSE*ASASRKSRLLA Trigger: GGCCAGCAGGCGGGATTTCCGGGAAGCACTGGCCCATTCAGATTTACACCGAGCTCTGACTTCCCCACCTAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| CDS GCA 72 bp | AATCTGAATGGGCCAGTGCTTCCCGGAAATCCCGCCTaGTGGCCTCGGACAGCTCCAGTTCCCATGACTTCA | + |
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Preference number: 6 (lower is better) Translates to: NLNGPVLPGNPA*WPRTAPVPMTS Trigger: TGAAGTCATGGGAACTGGAGCTGTCCGAGGCCAGCAGGCGGGATTTCCGGGAAGCACTGGCCCATTCAGATT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| CDS CCA 72 bp | CTTGAGTCCAGGTCATCCCCTGAGCCTAGTCCACGGTaGCACAGTACTAGATCCACCAAGTCTTCCTTCTCA | + |
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Preference number: 6 (lower is better) Translates to: LESRSSPEPSPR*HSTRSTKSSFS Trigger: TGAGAAGGAAGACTTGGTGGATCTAGTACTGTGCCACCGTGGACTAGGCTCAGGGGATGACCTGGACTCAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031434.8 ENSMUST00000198602.2 |
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| CDS GCA 72 bp | ACAGGCTTTGCAAACTATATTGGGTCCTTCAGTAGCTaGTGGTGGGTAGGTGGGGAAGTCAGAGCTCGGTGT | + |
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Preference number: 6 (lower is better) Translates to: TGFANYIGSFSS*WWVGGEVRARC Trigger: ACACCGAGCTCTGACTTCCCCACCTACCCACCAGCAGCTACTGAAGGACCCAATATAGTTTGCAAAGCCTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| CDS CCA 72 bp | ATCCACCAAGTCTTCCTTCTCACGACAAGTGTCGGTTaGTATGTTTCTGAGGAGGAGATACTGCCGCAGGTC | + |
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Preference number: 6 (lower is better) Translates to: IHQVFLLTTSVG*YVSEEEILPQV Trigger: GACCTGCGGCAGTATCTCCTCCTCAGAAACATACCAACCGACACTTGTCGTGAGAAGGAAGACTTGGTGGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031434.8 ENSMUST00000198602.2 |
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| CDS CAA 72 bp | CTTTTTAGAGAGCCCCGGGTTCTGTTCCTCCTCCTCTaGTTCGTCGTCGTCATCTTCATCATCGTCGTCATC | + |
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Preference number: 6 (lower is better) Translates to: LFREPRVLFLLL*FVVVIFIIVVI Trigger: GATGACGACGATGATGAAGATGACGACGACGAACAAGAGGAGGAGGAACAGAACCCGGGGCTCTCTAAAAAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| CDS TCA 72 bp | CTGGCGCACACTCATCCCTTCTACCTCTTCAAGGCTTaGGAGGTCAGACAGGGAAGCTCTTGCTTTCTTTTT | + |
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Preference number: 6 (lower is better) Translates to: LAHTHPFYLFKA*EVRQGSSCFLF Trigger: AAAAAGAAAGCAAGAGCTTCCCTGTCTGACCTCTCAAGCCTTGAAGAGGTAGAAGGGATGAGTGTGCGCCAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| CDS TCA 72 bp | CTTCCTTCTCACGACAAGTGTCGGTTGGTATGTTTCTaGGGAGGAGATACTGCCGCAGGTCCTTCACTTTTA | + |
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Preference number: 6 (lower is better) Translates to: LPSHDKCRLVCF*GGDTAAGPSLL Trigger: TAAAAGTGAAGGACCTGCGGCAGTATCTCCTCCTCAGAAACATACCAACCGACACTTGTCGTGAGAAGGAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031434.8 ENSMUST00000198602.2 |
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| CDS TCA 72 bp | ATGCAGATTCGGCACAGGCTGTCATCTTCCTCATCCTaGAGTTGCATCCGCTCACCATATGACTTTTGGTTT | + |
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Preference number: 6 (lower is better) Translates to: MQIRHRLSSSSS*SCIRSPYDFWF Trigger: AAACCAAAAGTCATATGGTGAGCGGATGCAACTTCAGGATGAGGAAGATGACAGCCTGTGCCGAATCTGCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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| CDS CAA 90 bp | CATCATCGTCGTCATCATCATCGTCGTCGTCATCATCATCTGTGTTaGCTGAAGCTATTTCACTTTGTACCTGTGCCAGGACTTCTGATC | + |
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Preference number: 6 (lower is better) Translates to: HHRRHHHRRRHHHLC*LKLFHFVPVPGLLI Trigger: GATCAGAAGTCCTGGCACAGGTACAAAGTGAAATAGCTTCAGCAAACACAGATGATGATGACGACGACGATGATGATGACGACGATGATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031434.8 |
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