Pregenerated sensors for RNF227 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000043419Ensembl transcript IDs: ENSMUST00000129321.2, ENSMUST00000151617.3, ENSMUST00000218008.2
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTAAATAAATGCCCCTTGGATGTTTTCATACCTGCCCTATCCAGCTaGAGGGAGGTTGTATATGCAAGATTCCCAATCATAAGCAGGGAG | + |
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Preference number: 1 (lower is better) Translates to: VNKCPLDVFIPALSS*REVVYARFPIISRE Trigger: CTCCCTGCTTATGATTGGGAATCTTGCATATACAACCTCCCTTCAGCTGGATAGGGCAGGTATGAAAACATCCAAGGGGCATTTATTTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000129321.2 ENSMUST00000218008.2 |
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| 3UTR TCA 90 bp | AGTGTTTTAAATGTTCCACCTACAGCTGATGATGCCATCTCAGAGTaGCTAAGAGCTAAACCAGTGATTCTTAACTTACATACACATACC | + |
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Preference number: 1 (lower is better) Translates to: SVLNVPPTADDAISE*LRAKPVILNLHTHT Trigger: GGTATGTGTATGTAAGTTAAGAATCACTGGTTTAGCTCTTAGTCACTCTGAGATGGCATCATCAGCTGTAGGTGGAACATTTAAAACACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129321.2 |
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| 3UTR-3UTR TCA 90 bp | AGAGCTAAACCAGTGATTCTTAACTTACATACACATACCTGGGATTCTAAAACTGTGTCAGAGCACGCCTaGGGATGCTGCTCCCACCTG | + |
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Preference number: 2 (lower is better) Translates to: RAKPVILNLHTHTWDSKTVSEHA*GCCSHL Trigger: CAGGTGGGAGCAGCATCCTCAGGCGTGCTCTGACAC...AGTTTTAGAATCCCAGGTATGTGTATGTAAGTTAAGAATCACTGGTTTAGCTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129321.2 |
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| 3UTR-3UTR TCA 90 bp | TCCACAGTACACATTGTCAACCACAGACCACTGCTAAAATTGGATCCTTTGCTTTTGGCCACTCCATCCTaGAAATATAATGCTGGCACA | + |
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Preference number: 2 (lower is better) Translates to: STVHIVNHRPLLKLDPLLLATPS*KYNAGT Trigger: TGTGCCAGCATTATATTTTCAGGATGGAGTGGCCAA...AAGCAAAGGATCCAATTTTAGCAGTGGTCTGTGGTTGACAATGTGTACTGTGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000129321.2 ENSMUST00000218008.2 |
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| 3UTR-3UTR CCA 90 bp | AGAGCTAAACCAGTGATTCTTAACTTACATACACATACCTGGGATTCTAAAACTCCGGGGAATGTGGACTaGGGTCCTGAAATTCTGCAT | + |
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Preference number: 2 (lower is better) Translates to: RAKPVILNLHTHTWDSKTPGNVD*GPEILH Trigger: ATGCAGAATTTCAGGACCCCAGTCCACATTCCCCGG...AGTTTTAGAATCCCAGGTATGTGTATGTAAGTTAAGAATCACTGGTTTAGCTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129321.2 |
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| 3UTR-3UTR CCA 90 bp | TCCACAGTACACATTGTCAACCACAGACCACTGCTAAAATTGGATCCTTTGCTTGTTTCTATTATCCCTTaGCCACTCCATCCTGAAAAT | + |
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Preference number: 2 (lower is better) Translates to: STVHIVNHRPLLKLDPLLVSIIP*PLHPEN Trigger: ATTTTCAGGATGGAGTGGCCAAGGGATAATAGAAAC...AAGCAAAGGATCCAATTTTAGCAGTGGTCTGTGGTTGACAATGTGTACTGTGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000129321.2 ENSMUST00000218008.2 |
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| 3UTR GCA 72 bp | CATACCTGCCCTATCCAGCTGAAGGGAGGTTGTATATaGAAGATTCCCAATCATAAGCAGGGAGTCAACTCA | + |
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Preference number: 3 (lower is better) Translates to: HTCPIQLKGGCI*KIPNHKQGVNS Trigger: TGAGTTGACTCCCTGCTTATGATTGGGAATCTTGCATATACAACCTCCCTTCAGCTGGATAGGGCAGGTATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000129321.2 ENSMUST00000218008.2 |
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| 3UTR TCA 72 bp | ACTGGGGTCCTGAAATTCTGCATTTCTAGCAAGCTGTaGGACCAACCAACACTGCTGGTCTTGATTTTAAGT | + |
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Preference number: 3 (lower is better) Translates to: TGVLKFCISSKL*DQPTLLVLILS Trigger: ACTTAAAATCAAGACCAGCAGTGTTGGTTGGTCTCACAGCTTGCTAGAAATGCAGAATTTCAGGACCCCAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129321.2 |
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| 3UTR TCA 72 bp | AATGTTCCACCTACAGCTGATGATGCCATCTCAGAGTaGCTAAGAGCTAAACCAGTGATTCTTAACTTACAT | + |
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Preference number: 3 (lower is better) Translates to: NVPPTADDAISE*LRAKPVILNLH Trigger: ATGTAAGTTAAGAATCACTGGTTTAGCTCTTAGTCACTCTGAGATGGCATCATCAGCTGTAGGTGGAACATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129321.2 |
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| 3UTR-3UTR CAA 90 bp | CATGCCAGCAAACACAACCAGATAAGTGAGATTGACATGACATATAAATTAGCTCTAAAATTGGATCCTTaGCTTACACCACAGACTCTG | + |
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Preference number: 3 (lower is better) Translates to: HASKHNQISEIDMTYKLALKLDP*LTPQTL Trigger: CAGAGTCTGTGGTGTAAGCAAAGGATCCAATTTTAG...AGCTAATTTATATGTCATGTCAATCTCACTTATCTGGTTGTGTTTGCTGGCATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000129321.2 ENSMUST00000218008.2 |
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| 3UTR-3UTR CAA 90 bp | CATGCCAGCAAACACAACCAGATAAGTGAGATTGACATGACATATAAATTAGCTAGACCACTGCTAAAATaGGATCCTTTGCTTACACCA | + |
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Preference number: 3 (lower is better) Translates to: HASKHNQISEIDMTYKLARPLLK*DPLLTP Trigger: TGGTGTAAGCAAAGGATCCAATTTTAGCAGTGGTCT...AGCTAATTTATATGTCATGTCAATCTCACTTATCTGGTTGTGTTTGCTGGCATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000129321.2 ENSMUST00000218008.2 |
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| CDS-3UTR TCA 90 bp | ATGGTAGGCTTTGTTTCTATTATCCCTTGGCCACTCCATCCTGAAAATATAATGGGCAGAACGGGCACGTaGCAGCGCGGCGCAGGCGCA | + |
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Preference number: 4 (lower is better) Translates to: MVGFVSIIPWPLHPENIMGRTGT*QRGAGA Trigger: TGCGCCTGCGCCGCGCTGTCACGTGCCCGTTCTGCC...CATTATATTTTCAGGATGGAGTGGCCAAGGGATAATAGAAACAAAGCCTACCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129321.2 |
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| CDS-3UTR TCA 90 bp | TTGACATCAACCTTTTGTGTCAGAGCACGCCTGAGGATGCTGCTCCCACCTGCTTGTGGGCAATGTCCTTaGCCTCTGGACAGTAGAGCA | + |
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Preference number: 4 (lower is better) Translates to: LTSTFCVRARLRMLLPPACGQCP*PLDSRA Trigger: TGCTCTACTGTCCAGAGGTCAAGGACATTGCCCACA...AGCAGGTGGGAGCAGCATCCTCAGGCGTGCTCTGACACAAAAGGTTGATGTCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000129321.2 ENSMUST00000151617.3 ENSMUST00000218008.2 |
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| CDS-3UTR CCA 90 bp | ACCAATTCCAGCATCAGCCTTGATTTCCAGGTAGTCTTGACATCAACCTTTTGTGCGCCAACCCGCACTTaGAGGTCCCGCCCCCTTCTC | + |
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Preference number: 4 (lower is better) Translates to: TNSSISLDFQVVLTSTFCAPTRT*RSRPLL Trigger: GAGAAGGGGGCGGGACCTCCAAGTGCGGGTTGGCGC...ACAAAAGGTTGATGTCAAGACTACCTGGAAATCAAGGCTGATGCTGGAATTGGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000129321.2 ENSMUST00000218008.2 |
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| CDS-3UTR CCA 90 bp | TCAACCTTTTGTGTCAGAGCACGCCTGAGGATGCTGCTCCCACCTGCTTTCTGCAATGTCCTTGACCTCTaGACAGTAGAGCACCGCACT | + |
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Preference number: 4 (lower is better) Translates to: STFCVRARLRMLLPPAFCNVLDL*TVEHRT Trigger: AGTGCGGTGCTCTACTGTCCAGAGGTCAAGGACATT...GCAGAAAGCAGGTGGGAGCAGCATCCTCAGGCGTGCTCTGACACAAAAGGTTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151617.3 |
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| CDS-3UTR CCA 90 bp | ATGGTAGGCTTTGTTTCTATTATCCCTTGGCCACTCCATCCTGAAAATATAATGGCGCCAACCCGCACTTaGAGGTCCCGCCCCCTTCTC | + |
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Preference number: 4 (lower is better) Translates to: MVGFVSIIPWPLHPENIMAPTRT*RSRPLL Trigger: GAGAAGGGGGCGGGACCTCCAAGTGCGGGTTGGCGC...CATTATATTTTCAGGATGGAGTGGCCAAGGGATAATAGAAACAAAGCCTACCAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000129321.2 ENSMUST00000218008.2 |
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| 3UTR CAA 72 bp | GCCGCTCAGAATCCACACCATCTAGGGTCCTTTCTGTaGAGCTCCATCTCCATCACGCATGTACCAATTCCA | + |
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Preference number: 4 (lower is better) Translates to: AAQNPHHLGSFL*SSISITHVPIP Trigger: TGGAATTGGTACATGCGTGATGGAGATGGAGCTCAACAGAAAGGACCCTAGATGGTGTGGATTCTGAGCGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000129321.2 ENSMUST00000218008.2 |
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| CDS-3UTR TCA 90 bp | GTGGGAAGATGGCATGCCAGCAAACACAACCAGATAAGTGAGATTGACATGACATGTGGGCAATGTCCTTaGCCTCTGGACAGTAGAGCA | + |
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Preference number: 4 (lower is better) Translates to: VGRWHASKHNQISEIDMTCGQCP*PLDSRA Trigger: TGCTCTACTGTCCAGAGGTCAAGGACATTGCCCACA...TGTCATGTCAATCTCACTTATCTGGTTGTGTTTGCTGGCATGCCATCTTCCCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000129321.2 ENSMUST00000218008.2 |
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| CDS-3UTR TCA 90 bp | ACCAATTCCAGCATCAGCCTTGATTTCCAGGTAGTCTTGACATCAACCTTTTGTTGTGGGCAATGTCCTTaGCCTCTGGACAGTAGAGCA | + |
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Preference number: 4 (lower is better) Translates to: TNSSISLDFQVVLTSTFCCGQCP*PLDSRA Trigger: TGCTCTACTGTCCAGAGGTCAAGGACATTGCCCACA...ACAAAAGGTTGATGTCAAGACTACCTGGAAATCAAGGCTGATGCTGGAATTGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000129321.2 ENSMUST00000151617.3 ENSMUST00000218008.2 |
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| CDS-3UTR CCA 90 bp | AGTACACATTGTCAACCACAGACCACTGCTAAAATTGGATCCTTTGCTTACACCGTACAACGGGTCATGTaGGCAATGTCCTTGACCTCT | + |
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Preference number: 4 (lower is better) Translates to: STHCQPQTTAKIGSFAYTVQRVM*AMSLTS Trigger: AGAGGTCAAGGACATTGCCCACATGACCCGTTGTAC...GGTGTAAGCAAAGGATCCAATTTTAGCAGTGGTCTGTGGTTGACAATGTGTACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000129321.2 ENSMUST00000218008.2 |
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| CDS-3UTR CCA 90 bp | AGCATCAGCCTTGATTTCCAGGTAGTCTTGACATCAACCTTTTGTGTCAGAGCAAATGTCCTTGACCTCTaGACAGTAGAGCACATTGCT | + |
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Preference number: 4 (lower is better) Translates to: SISLDFQVVLTSTFCVRANVLDL*TVEHIA Trigger: AGCAATGTGCTCTACTGTCCAGAGGTCAAGGACATT...TGCTCTGACACAAAAGGTTGATGTCAAGACTACCTGGAAATCAAGGCTGATGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000129321.2 ENSMUST00000218008.2 |
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| 3UTR CAA 72 bp | ATTGTCAACCACAGACCACTGCTAAAATTGGATCCTTaGCTTACACCACAGACTCTGAACAAACGCCAAAGC | + |
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Preference number: 4 (lower is better) Translates to: IVNHRPLLKLDP*LTPQTLNKRQS Trigger: GCTTTGGCGTTTGTTCAGAGTCTGTGGTGTAAGCAAAGGATCCAATTTTAGCAGTGGTCTGTGGTTGACAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000129321.2 ENSMUST00000218008.2 |
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| CDS-3UTR GCA 90 bp | CATGCCAGCAAACACAACCAGATAAGTGAGATTGACATGACATATAAATTAGCTGTCGGAAACAGATGTTaGAGTCCAGCTCACCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: HASKHNQISEIDMTYKLAVGNRC*SPAHPA Trigger: AGCTGGGTGAGCTGGACTGCAACATCTGTTTCCGAC...AGCTAATTTATATGTCATGTCAATCTCACTTATCTGGTTGTGTTTGCTGGCATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129321.2 |
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| 3UTR CAA 72 bp | ACAGTACACATTGTCAACCACAGACCACTGCTAAAATaGGATCCTTTGCTTACACCACAGACTCTGAACAAA | + |
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Preference number: 4 (lower is better) Translates to: TVHIVNHRPLLK*DPLLTPQTLNK Trigger: TTTGTTCAGAGTCTGTGGTGTAAGCAAAGGATCCAATTTTAGCAGTGGTCTGTGGTTGACAATGTGTACTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000129321.2 ENSMUST00000218008.2 |
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| CDS-3UTR CCA 90 bp | CATGCCAGCAAACACAACCAGATAAGTGAGATTGACATGACATATAAATTAGCTAATGTCCTTGACCTCTaGACAGTAGAGCACATTGCT | + |
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Preference number: 4 (lower is better) Translates to: HASKHNQISEIDMTYKLANVLDL*TVEHIA Trigger: AGCAATGTGCTCTACTGTCCAGAGGTCAAGGACATT...AGCTAATTTATATGTCATGTCAATCTCACTTATCTGGTTGTGTTTGCTGGCATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000129321.2 ENSMUST00000218008.2 |
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| CDS GCA 90 bp | TGCGGCTGCCGTCGCCCCGCGCTGCCAGCTCGCGCAGGCAAGCTGTaGACAGCGTGTGGCCGCAGCGGGCGCGCGCCGTGCCAGGCAGGC | + |
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Preference number: 5 (lower is better) Translates to: CGCRRPALPARAGKL*TACGRSGRAPCQAG Trigger: GCCTGCCTGGCACGGCGCGCGCCCGCTGCGGCCACACGCTGTGCACAGCTTGCCTGCGCGAGCTGGCAGCGCGGGGCGACGGCAGCCGCA 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129321.2 |
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| CDS GCA 90 bp | CAGGCGCACCACGCGCGCGGCCGTGCGGCTGCCGTCGCCCCGCGCTaGCAGCTCGCGCAGGCAAGCTGTGCACAGCGTGTGGCCGCAGCG | + |
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Preference number: 5 (lower is better) Translates to: QAHHARGRAAAVAPR*QLAQASCAQRVAAA Trigger: CGCTGCGGCCACACGCTGTGCACAGCTTGCCTGCGCGAGCTGGCAGCGCGGGGCGACGGCAGCCGCACGGCCGCGCGCGTGGTGCGCCTG 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129321.2 |
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| CDS TCA 90 bp | TTTCCTCCAGCCGTGACCACAAGACAGGGTCTAGCGCGATCTCCGTaGCGCCGCCGCGCGGGAGCGGGGAAGGCGCGCGGCAGAACGGGC | + |
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Preference number: 5 (lower is better) Translates to: FPPAVTTRQGLARSP*RRRAGAGKARGRTG Trigger: GCCCGTTCTGCCGCGCGCCTTCCCCGCTCCCGCGCGGCGGCGTCACGGAGATCGCGCTAGACCCTGTCTTGTGGTCACGGCTGGAGGAAA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129321.2 |
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| CDS GCA 90 bp | TGGACAGTAGAGCACATTGCTAGGCAACGGACGCCGCAAGCGGCGTaGCGGCGCCAGGACCCTGTCCAAAATTCGGCGAAGCGCGCGCCA | + |
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Preference number: 5 (lower is better) Translates to: WTVEHIARQRTPQAA*RRQDPVQNSAKRAP Trigger: TGGCGCGCGCTTCGCCGAATTTTGGACAGGGTCCTGGCGCCGGCACGCCGCTTGCGGCGTCCGTTGCCTAGCAATGTGCTCTACTGTCCA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000129321.2 ENSMUST00000218008.2 |
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| CDS GCA 90 bp | GGCGGGGCGCACGGGCCCCGAGGTTGTAGGGTCGGAAACAGATGTTaGAGTCCAGCTCACCCAGCTCGGGAAGAGAGGGCACTCTCATCA | + |
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Preference number: 5 (lower is better) Translates to: GGAHGPRGCRVGNRC*SPAHPAREERALSS Trigger: TGATGAGAGTGCCCTCTCTTCCCGAGCTGGGTGAGCTGGACTGCAACATCTGTTTCCGACCCTACAACCTCGGGGCCCGTGCGCCCCGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129321.2 |
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| CDS-3UTR CAA 90 bp | AGCCTTGATTTCCAGGTAGTCTTGACATCAACCTTTTGTGTCAGAGCACGCCTGCGCGCCAACCCGCACTaGGAGGTCCCGCCCCCTTCT | + |
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Preference number: 5 (lower is better) Translates to: SLDFQVVLTSTFCVRARLRANPH*EVPPPS Trigger: AGAAGGGGGCGGGACCTCCAAGTGCGGGTTGGCGCG...CAGGCGTGCTCTGACACAAAAGGTTGATGTCAAGACTACCTGGAAATCAAGGCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000129321.2 ENSMUST00000218008.2 |
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| CDS-3UTR CAA 90 bp | GGATGTTTTCATACCTGCCCTATCCAGCTGAAGGGAGGTTGTATATGCAAGATTGGTCGGAAACAGATGTaGCAGTCCAGCTCACCCAGC | + |
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Preference number: 5 (lower is better) Translates to: GCFHTCPIQLKGGCICKIGRKQM*QSSSPS Trigger: GCTGGGTGAGCTGGACTGCAACATCTGTTTCCGACC...AATCTTGCATATACAACCTCCCTTCAGCTGGATAGGGCAGGTATGAAAACATCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129321.2 |
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| CDS-3UTR CAA 90 bp | AGAGCTAAACCAGTGATTCTTAACTTACATACACATACCTGGGATTCTAAAACTCGCGCCAACCCGCACTaGGAGGTCCCGCCCCCTTCT | + |
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Preference number: 5 (lower is better) Translates to: RAKPVILNLHTHTWDSKTRANPH*EVPPPS Trigger: AGAAGGGGGCGGGACCTCCAAGTGCGGGTTGGCGCG...AGTTTTAGAATCCCAGGTATGTGTATGTAAGTTAAGAATCACTGGTTTAGCTCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000129321.2 |
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| CDS GCA 72 bp | CGTCGCCCCGCGCTGCCAGCTCGCGCAGGCAAGCTGTaGACAGCGTGTGGCCGCAGCGGGCGCGCGCCGTGC | + |
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Preference number: 6 (lower is better) Translates to: RRPALPARAGKL*TACGRSGRAPC Trigger: GCACGGCGCGCGCCCGCTGCGGCCACACGCTGTGCACAGCTTGCCTGCGCGAGCTGGCAGCGCGGGGCGACG 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129321.2 |
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| CDS CCA 72 bp | GCTGCCAGCTCGCGCAGGCAAGCTGTGCACAGCGTGTaGCCGCAGCGGGCGCGCGCCGTGCCAGGCAGGCGG | + |
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Preference number: 6 (lower is better) Translates to: AASSRRQAVHSV*PQRARAVPGRR Trigger: CCGCCTGCCTGGCACGGCGCGCGCCCGCTGCGGCCACACGCTGTGCACAGCTTGCCTGCGCGAGCTGGCAGC 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129321.2 |
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| CDS TCA 72 bp | GCCGTGACCACAAGACAGGGTCTAGCGCGATCTCCGTaGCGCCGCCGCGCGGGAGCGGGGAAGGCGCGCGGC | + |
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Preference number: 6 (lower is better) Translates to: AVTTRQGLARSP*RRRAGAGKARG Trigger: GCCGCGCGCCTTCCCCGCTCCCGCGCGGCGGCGTCACGGAGATCGCGCTAGACCCTGTCTTGTGGTCACGGC 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129321.2 |
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| CDS CCA 72 bp | GTCCAAAATTCGGCGAAGCGCGCGCCAACCCGCACTTaGAGGTCCCGCCCCCTTCTCGCTCTCCGCTTCCCC | + |
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Preference number: 6 (lower is better) Translates to: VQNSAKRAPTRT*RSRPLLALRFP Trigger: GGGGAAGCGGAGAGCGAGAAGGGGGCGGGACCTCCAAGTGCGGGTTGGCGCGCGCTTCGCCGAATTTTGGAC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000129321.2 ENSMUST00000218008.2 |
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| CDS CCA 72 bp | CCCCGTCGTCGTCCTCTCCATCCTCTCCGCTGTCTTTaGCCGGGCTCCCCATCGGGTCTCCTTCACGCTCAG | + |
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Preference number: 6 (lower is better) Translates to: PRRRPLHPLRCL*PGSPSGLLHAQ Trigger: CTGAGCGTGAAGGAGACCCGATGGGGAGCCCGGCCAAAGACAGCGGAGAGGATGGAGAGGACGACGACGGGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129321.2 |
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| CDS CAA 72 bp | TGTCCAAAATTCGGCGAAGCGCGCGCCAACCCGCACTaGGAGGTCCCGCCCCCTTCTCGCTCTCCGCTTCCC | + |
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Preference number: 6 (lower is better) Translates to: CPKFGEARANPH*EVPPPSRSPLP Trigger: GGGAAGCGGAGAGCGAGAAGGGGGCGGGACCTCCAAGTGCGGGTTGGCGCGCGCTTCGCCGAATTTTGGACA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000129321.2 ENSMUST00000218008.2 |
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| CDS GCA 72 bp | GAGCACATTGCTAGGCAACGGACGCCGCAAGCGGCGTaGCGGCGCCAGGACCCTGTCCAAAATTCGGCGAAG | + |
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Preference number: 6 (lower is better) Translates to: EHIARQRTPQAA*RRQDPVQNSAK Trigger: CTTCGCCGAATTTTGGACAGGGTCCTGGCGCCGGCACGCCGCTTGCGGCGTCCGTTGCCTAGCAATGTGCTC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000129321.2 ENSMUST00000218008.2 |
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| CDS CAA 72 bp | TCCCCGTCGTCGTCCTCTCCATCCTCTCCGCTGTCTTaGGCCGGGCTCCCCATCGGGTCTCCTTCACGCTCA | + |
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Preference number: 6 (lower is better) Translates to: SPSSSSPSSPLS*AGLPIGSPSRS Trigger: TGAGCGTGAAGGAGACCCGATGGGGAGCCCGGCCAAAGACAGCGGAGAGGATGGAGAGGACGACGACGGGGA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129321.2 |
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| CDS GCA 72 bp | CACGGGCCCCGAGGTTGTAGGGTCGGAAACAGATGTTaGAGTCCAGCTCACCCAGCTCGGGAAGAGAGGGCA | + |
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Preference number: 6 (lower is better) Translates to: HGPRGCRVGNRC*SPAHPAREERA Trigger: TGCCCTCTCTTCCCGAGCTGGGTGAGCTGGACTGCAACATCTGTTTCCGACCCTACAACCTCGGGGCCCGTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129321.2 |
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| CDS CCA 72 bp | CGTACAACGGGTCATGTGGGCAATGTCCTTGACCTCTaGACAGTAGAGCACCGCACTTGGAGGTCCCGCCCC | + |
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Preference number: 6 (lower is better) Translates to: RTTGHVGNVLDL*TVEHRTWRSRP Trigger: GGGGCGGGACCTCCAAGTGCGGTGCTCTACTGTCCAGAGGTCAAGGACATTGCCCACATGACCCGTTGTACG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151617.3 |
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| CDS CCA 72 bp | CGTACAACGGGTCATGTGGGCAATGTCCTTGACCTCTaGACAGTAGAGCACATTGCTAGGCAACGGACGCCG | + |
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Preference number: 6 (lower is better) Translates to: RTTGHVGNVLDL*TVEHIARQRTP Trigger: CGGCGTCCGTTGCCTAGCAATGTGCTCTACTGTCCAGAGGTCAAGGACATTGCCCACATGACCCGTTGTACG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000129321.2 ENSMUST00000218008.2 |
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