Pregenerated sensors for RNF223 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000110404Ensembl transcript IDs: ENSMUST00000209248.2
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCGGGGTCCCGGCGACGTCTTAAGGAAGGAAGAATGGCAAACTCCTaGTGTTTTGGCAATTCAGCTGTGTCCAGGGAGGCCAGGCACCCG | + |
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Preference number: 1 (lower is better) Translates to: SGSRRRLKEGRMANS*CFGNSAVSREARHP Trigger: CGGGTGCCTGGCCTCCCTGGACACAGCTGAATTGCCAAAACAGCAGGAGTTTGCCATTCTTCCTTCCTTAAGACGTCGCCGGGACCCCGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| 3UTR CCA 90 bp | CAATTCAGCTGTGTCCAGGGAGGCCAGGCACCCGACCAGCGTCCCTaGCTTCCTTTCCCTATCTGTATGATAGGGTCCCAGGGCAGTTTC | + |
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Preference number: 1 (lower is better) Translates to: QFSCVQGGQAPDQRP*LPFPICMIGSQGSF Trigger: GAAACTGCCCTGGGACCCTATCATACAGATAGGGAAAGGAAGCCAGGGACGCTGGTCGGGTGCCTGGCCTCCCTGGACACAGCTGAATTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| 3UTR GCA 90 bp | ACAGCTGGTGAGTTCCTGCTGTGGCGCTGTGGCATGGGCAAAAGGTaGCCTGCCTTTTCATTCTCACTCTTAGAGAAGCAGCTGCTCGGG | + |
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Preference number: 1 (lower is better) Translates to: TAGEFLLWRCGMGKR*PAFSFSLLEKQLLG Trigger: CCCGAGCAGCTGCTTCTCTAAGAGTGAGAATGAAAAGGCAGGGCACCTTTTGCCCATGCCACAGCGCCACAGCAGGAACTCACCAGCTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| 3UTR CAA 90 bp | CCCGGCGACGTCTTAAGGAAGGAAGAATGGCAAACTCCTGCTGTTTaGGCAATTCAGCTGTGTCCAGGGAGGCCAGGCACCCGACCAGCG | + |
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Preference number: 2 (lower is better) Translates to: PGDVLRKEEWQTPAV*AIQLCPGRPGTRPA Trigger: CGCTGGTCGGGTGCCTGGCCTCCCTGGACACAGCTGAATTGCCAAAACAGCAGGAGTTTGCCATTCTTCCTTCCTTAAGACGTCGCCGGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| 3UTR-3UTR GCA 90 bp | GCTGTGGCGCTGTGGCATGGGCAAAAGGTGCCCTGCCTTTTCATTCTCACTCTTAGAATGGCAAACTCCTaGTGTTTTGGCAATTCAGCT | + |
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Preference number: 2 (lower is better) Translates to: AVALWHGQKVPCLFILTLRMANS*CFGNSA Trigger: AGCTGAATTGCCAAAACAGCAGGAGTTTGCCATTCT...AAGAGTGAGAATGAAAAGGCAGGGCACCTTTTGCCCATGCCACAGCGCCACAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| 3UTR CCA 72 bp | TGTGTCCAGGGAGGCCAGGCACCCGACCAGCGTCCCTaGCTTCCTTTCCCTATCTGTATGATAGGGTCCCAG | + |
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Preference number: 3 (lower is better) Translates to: CVQGGQAPDQRP*LPFPICMIGSQ Trigger: CTGGGACCCTATCATACAGATAGGGAAAGGAAGCCAGGGACGCTGGTCGGGTGCCTGGCCTCCCTGGACACA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| 3UTR GCA 72 bp | GCCATTCATAATGGCCATGGACAGCTGGTGAGTTCCTaGTGTGGCGCTGTGGCATGGGCAAAAGGTGCCCTG | + |
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Preference number: 3 (lower is better) Translates to: AIHNGHGQLVSS*CGAVAWAKGAL Trigger: CAGGGCACCTTTTGCCCATGCCACAGCGCCACAGCAGGAACTCACCAGCTGTCCATGGCCATTATGAATGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| 3UTR-3UTR CAA 90 bp | TGGCCATGGACAGCTGGTGAGTTCCTGCTGTGGCGCTGTGGCATGGGCAAAAGGACTCTTTTGTTCTCATaGGCACCTAGTCCTGGAGAG | + |
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Preference number: 3 (lower is better) Translates to: WPWTAGEFLLWRCGMGKRTLLFS*APSPGE Trigger: CTCTCCAGGACTAGGTGCCAATGAGAACAAAAGAGT...CCTTTTGCCCATGCCACAGCGCCACAGCAGGAACTCACCAGCTGTCCATGGCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| 3UTR GCA 72 bp | CCTGCTGTGGCGCTGTGGCATGGGCAAAAGGTGCCCTaGCTTTTCATTCTCACTCTTAGAGAAGCAGCTGCT | + |
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Preference number: 3 (lower is better) Translates to: PAVALWHGQKVP*LFILTLREAAA Trigger: AGCAGCTGCTTCTCTAAGAGTGAGAATGAAAAGGCAGGGCACCTTTTGCCCATGCCACAGCGCCACAGCAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| 3UTR GCA 72 bp | CGGCGACGTCTTAAGGAAGGAAGAATGGCAAACTCCTaGTGTTTTGGCAATTCAGCTGTGTCCAGGGAGGCC | + |
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Preference number: 3 (lower is better) Translates to: RRRLKEGRMANS*CFGNSAVSREA Trigger: GGCCTCCCTGGACACAGCTGAATTGCCAAAACAGCAGGAGTTTGCCATTCTTCCTTCCTTAAGACGTCGCCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| 3UTR GCA 72 bp | GAGTTCCTGCTGTGGCGCTGTGGCATGGGCAAAAGGTaGCCTGCCTTTTCATTCTCACTCTTAGAGAAGCAG | + |
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Preference number: 3 (lower is better) Translates to: EFLLWRCGMGKR*PAFSFSLLEKQ Trigger: CTGCTTCTCTAAGAGTGAGAATGAAAAGGCAGGGCACCTTTTGCCCATGCCACAGCGCCACAGCAGGAACTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| 3UTR CCA 72 bp | GCTCGGGGTCCCGGCGACGTCTTAAGGAAGGAAGAATaGCAAACTCCTGCTGTTTTGGCAATTCAGCTGTGT | + |
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Preference number: 3 (lower is better) Translates to: ARGPGDVLRKEE*QTPAVLAIQLC Trigger: ACACAGCTGAATTGCCAAAACAGCAGGAGTTTGCCATTCTTCCTTCCTTAAGACGTCGCCGGGACCCCGAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| 3UTR-3UTR CAA 90 bp | GCTGTGGCGCTGTGGCATGGGCAAAAGGTGCCCTGCCTTTTCATTCTCACTCTTAAAGCTGCTATGTTCTaGACCTCACTGGGTCACCAC | + |
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Preference number: 3 (lower is better) Translates to: AVALWHGQKVPCLFILTLKAAMF*TSLGHH Trigger: GTGGTGACCCAGTGAGGTCAAGAACATAGCAGCTTT...AAGAGTGAGAATGAAAAGGCAGGGCACCTTTTGCCCATGCCACAGCGCCACAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS-3UTR TCA 90 bp | CATGGACAGCTGGTGAGTTCCTGCTGTGGCGCTGTGGCATGGGCAAAAGGTGCCAGCTTGGCCTGTAGCTaGCGGCTGGTGCGCAGGGCA | + |
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Preference number: 4 (lower is better) Translates to: HGQLVSSCCGAVAWAKGASLACS*RLVRRA Trigger: TGCCCTGCGCACCAGCCGTCAGCTACAGGCCAAGCT...GGCACCTTTTGCCCATGCCACAGCGCCACAGCAGGAACTCACCAGCTGTCCATG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS-3UTR CCA 90 bp | GCTGTGGCGCTGTGGCATGGGCAAAAGGTGCCCTGCCTTTTCATTCTCACTCTTGAGCGGCCTGCAGGCTaGGCAGCTGCCAGCCTAGCC | + |
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Preference number: 4 (lower is better) Translates to: AVALWHGQKVPCLFILTLERPAG*AAASLA Trigger: GGCTAGGCTGGCAGCTGCCCAGCCTGCAGGCCGCTC...AAGAGTGAGAATGAAAAGGCAGGGCACCTTTTGCCCATGCCACAGCGCCACAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS-3UTR CCA 90 bp | TCAGCTGTGTCCAGGGAGGCCAGGCACCCGACCAGCGTCCCTGGCTTCCTTTCCCAGGTACAGGTAGGGTaGGCTCAGCTGGTTTGCTCA | + |
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Preference number: 4 (lower is better) Translates to: SAVSREARHPTSVPGFLSQVQVG*AQLVCS Trigger: TGAGCAAACCAGCTGAGCCCACCCTACCTGTACCTG...GGAAAGGAAGCCAGGGACGCTGGTCGGGTGCCTGGCCTCCCTGGACACAGCTGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS-3UTR CCA 90 bp | TCAGCTGTGTCCAGGGAGGCCAGGCACCCGACCAGCGTCCCTGGCTTCCTTTCCTTGGGTGCAGGGTCTTaGACAGGTACAGGTAGGGTG | + |
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Preference number: 4 (lower is better) Translates to: SAVSREARHPTSVPGFLSLGAGS*TGTGRV Trigger: CACCCTACCTGTACCTGTCCAAGACCCTGCACCCAA...GGAAAGGAAGCCAGGGACGCTGGTCGGGTGCCTGGCCTCCCTGGACACAGCTGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS-3UTR CCA 90 bp | GCAAACTCCTGCTGTTTTGGCAATTCAGCTGTGTCCAGGGAGGCCAGGCACCCGGGTGTGCTGGCAGCTTaGCCTGTAGCTGACGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: ANSCCFGNSAVSREARHPGVLAA*PVADGW Trigger: CCAGCCGTCAGCTACAGGCCAAGCTGCCAGCACACC...CGGGTGCCTGGCCTCCCTGGACACAGCTGAATTGCCAAAACAGCAGGAGTTTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS-3UTR CCA 90 bp | GCGTCCCTGGCTTCCTTTCCCTATCTGTATGATAGGGTCCCAGGGCAGTTTCTGGAGTACTGGGGGACTTaGGGCTGCCCCCTGAGCCAG | + |
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Preference number: 4 (lower is better) Translates to: ASLASFPYLYDRVPGQFLEYWGT*GCPLSQ Trigger: CTGGCTCAGGGGGCAGCCCCAAGTCCCCCAGTACTC...CAGAAACTGCCCTGGGACCCTATCATACAGATAGGGAAAGGAAGCCAGGGACGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS-3UTR CCA 90 bp | GCTGTGGCGCTGTGGCATGGGCAAAAGGTGCCCTGCCTTTTCATTCTCACTCTTGCGAGCCAGCCAGCCTaGGTTGGGTGCAGGGTCTTG | + |
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Preference number: 4 (lower is better) Translates to: AVALWHGQKVPCLFILTLASQPA*VGCRVL Trigger: CAAGACCCTGCACCCAACCCAGGCTGGCTGGCTCGC...AAGAGTGAGAATGAAAAGGCAGGGCACCTTTTGCCCATGCCACAGCGCCACAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS-3UTR GCA 90 bp | GAAGCAGCTGCTCGGGGTCCCGGCGACGTCTTAAGGAAGGAAGAATGGCAAACTCCAGCCTGGGTTGGGTaGAGGGTCTTGGACAGGTAC | + |
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Preference number: 4 (lower is better) Translates to: EAAARGPGDVLRKEEWQTPAWVG*RVLDRY Trigger: GTACCTGTCCAAGACCCTGCACCCAACCCAGGCTGG...AGTTTGCCATTCTTCCTTCCTTAAGACGTCGCCGGGACCCCGAGCAGCTGCTTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS-3UTR CCA 90 bp | GAAGCAGCTGCTCGGGGTCCCGGCGACGTCTTAAGGAAGGAAGAATGGCAAACTGGCGGCAACACAGTTTaGTGCCCTCGAGCCACACAG | + |
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Preference number: 4 (lower is better) Translates to: EAAARGPGDVLRKEEWQTGGNTV*CPRATQ Trigger: CTGTGTGGCTCGAGGGCACCAAACTGTGTTGCCGCC...AGTTTGCCATTCTTCCTTCCTTAAGACGTCGCCGGGACCCCGAGCAGCTGCTTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS-3UTR CCA 90 bp | GCTGTGGCGCTGTGGCATGGGCAAAAGGTGCCCTGCCTTTTCATTCTCACTCTTCCAGCCAGCCTGGGTTaGGTGCAGGGTCTTGGACAG | + |
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Preference number: 4 (lower is better) Translates to: AVALWHGQKVPCLFILTLPASLG*VQGLGQ Trigger: CTGTCCAAGACCCTGCACCCAACCCAGGCTGGCTGG...AAGAGTGAGAATGAAAAGGCAGGGCACCTTTTGCCCATGCCACAGCGCCACAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS-3UTR GCA 90 bp | GAATGGCAAACTCCTGCTGTTTTGGCAATTCAGCTGTGTCCAGGGAGGCCAGGCGGCAACACAGTTTGGTaGCCTCGAGCCACACAGGCT | + |
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Preference number: 4 (lower is better) Translates to: EWQTPAVLAIQLCPGRPGGNTVW*PRATQA Trigger: AGCCTGTGTGGCTCGAGGGCACCAAACTGTGTTGCC...GCCTGGCCTCCCTGGACACAGCTGAATTGCCAAAACAGCAGGAGTTTGCCATTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS-3UTR TCA 90 bp | GCAAACTCCTGCTGTTTTGGCAATTCAGCTGTGTCCAGGGAGGCCAGGCACCCGGATGTTGTCGTAGCCTaGGAAGCAGATGGAGCATTC | + |
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Preference number: 4 (lower is better) Translates to: ANSCCFGNSAVSREARHPDVVVA*EADGAF Trigger: GAATGCTCCATCTGCTTCTCAGGCTACGACAACATC...CGGGTGCCTGGCCTCCCTGGACACAGCTGAATTGCCAAAACAGCAGGAGTTTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS-3UTR TCA 90 bp | AAACTCCTGCTGTTTTGGCAATTCAGCTGTGTCCAGGGAGGCCAGGCACCCGACGCAGATTTCCAGTTTTaGGTGCACACTGCACAGGCC | + |
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Preference number: 4 (lower is better) Translates to: KLLLFWQFSCVQGGQAPDADFQF*VHTAQA Trigger: GGCCTGTGCAGTGTGCACTCAAAACTGGAAATCTGC...GTCGGGTGCCTGGCCTCCCTGGACACAGCTGAATTGCCAAAACAGCAGGAGTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS-3UTR CCA 90 bp | CTAGTCCTGGAGAGTAAGGGACACATACATGTCCTAAATGGGGTTCTGGGGGACCTTGGCCAGAAGTGGTaGGCAAGGGGCGGCAACACA | + |
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Preference number: 4 (lower is better) Translates to: LVLESKGHIHVLNGVLGDLGQKW*ARGGNT Trigger: TGTGTTGCCGCCCCTTGCCCACCACTTCTGGCCAAG...GTCCCCCAGAACCCCATTTAGGACATGTATGTGTCCCTTACTCTCCAGGACTAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS-3UTR GCA 90 bp | TTTTGTTCTCATTGGCACCTAGTCCTGGAGAGTAAGGGACACATACATGTCCTATCTGCCAGAGCGGCCTaGAGGCTGGGCAGCTGCCAG | + |
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Preference number: 4 (lower is better) Translates to: FCSHWHLVLESKGHIHVLSARAA*RLGSCQ Trigger: CTGGCAGCTGCCCAGCCTGCAGGCCGCTCTGGCAGA...TAGGACATGTATGTGTCCCTTACTCTCCAGGACTAGGTGCCAATGAGAACAAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS-3UTR TCA 90 bp | GCGTCCCTGGCTTCCTTTCCCTATCTGTATGATAGGGTCCCAGGGCAGTTTCTGGCTCTTTGGGTGTCTTaGAGATGTTGTCGTAGCCTG | + |
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Preference number: 4 (lower is better) Translates to: ASLASFPYLYDRVPGQFLALWVS*RCCRSL Trigger: CAGGCTACGACAACATCTTCAAGACACCCAAAGAGC...CAGAAACTGCCCTGGGACCCTATCATACAGATAGGGAAAGGAAGCCAGGGACGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| 3UTR CAA 72 bp | GTCTTAAGGAAGGAAGAATGGCAAACTCCTGCTGTTTaGGCAATTCAGCTGTGTCCAGGGAGGCCAGGCACC | + |
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Preference number: 4 (lower is better) Translates to: VLRKEEWQTPAV*AIQLCPGRPGT Trigger: GGTGCCTGGCCTCCCTGGACACAGCTGAATTGCCAAAACAGCAGGAGTTTGCCATTCTTCCTTCCTTAAGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS-3UTR TCA 90 bp | TTTTGTTCTCATTGGCACCTAGTCCTGGAGAGTAAGGGACACATACATGTCCTAAGGGGACCTGGGCACTaGGGCTGTGGAGCTGTTCTG | + |
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Preference number: 4 (lower is better) Translates to: FCSHWHLVLESKGHIHVLRGPGH*GCGAVL Trigger: CAGAACAGCTCCACAGCCTCAGTGCCCAGGTCCCCT...TAGGACATGTATGTGTCCCTTACTCTCCAGGACTAGGTGCCAATGAGAACAAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS-3UTR CCA 90 bp | TTTTGTTCTCATTGGCACCTAGTCCTGGAGAGTAAGGGACACATACATGTCCTACCTCTTGGCCAGAAGTaGTGGGCAAGGGGCGGCAAC | + |
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Preference number: 4 (lower is better) Translates to: FCSHWHLVLESKGHIHVLPLGQK*WARGGN Trigger: GTTGCCGCCCCTTGCCCACCACTTCTGGCCAAGAGG...TAGGACATGTATGTGTCCCTTACTCTCCAGGACTAGGTGCCAATGAGAACAAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS-3UTR TCA 90 bp | TGTTCTCATTGGCACCTAGTCCTGGAGAGTAAGGGACACATACATGTCCTAAATTCGAGACAGAAGACGTaGGAGCAGGAAAGCTCTTTG | + |
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Preference number: 4 (lower is better) Translates to: CSHWHLVLESKGHIHVLNSRQKT*EQESSL Trigger: CAAAGAGCTTTCCTGCTCTCACGTCTTCTGTCTCGA...ATTTAGGACATGTATGTGTCCCTTACTCTCCAGGACTAGGTGCCAATGAGAACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS CCA 90 bp | GACGGCTGGTGCGCAGGGCAGGAGCCCCAGCGACAGGCACGGTTGTaGGCTGTCGGCAGAATGGACAGGGCACAGCTTCTCTGCCAGAGC | + |
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Preference number: 5 (lower is better) Translates to: DGWCAGQEPQRQARL*AVGRMDRAQLLCQS Trigger: GCTCTGGCAGAGAAGCTGTGCCCTGTCCATTCTGCCGACAGCCCACAACCGTGCCTGTCGCTGGGGCTCCTGCCCTGCGCACCAGCCGTC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS GCA 90 bp | CTCTCTGTAGGTGTGCTGGCAGCTTGGCCTGTAGCTGACGGCTGGTaGGCAGGGCAGGAGCCCCAGCGACAGGCACGGTTGTGGGCTGTC | + |
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Preference number: 5 (lower is better) Translates to: LSVGVLAAWPVADGW*AGQEPQRQARLWAV Trigger: GACAGCCCACAACCGTGCCTGTCGCTGGGGCTCCTGCCCTGCGCACCAGCCGTCAGCTACAGGCCAAGCTGCCAGCACACCTACAGAGAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS CCA 90 bp | CCTCTCTCTGTAGGTGTGCTGGCAGCTTGGCCTGTAGCTGACGGCTaGTGCGCAGGGCAGGAGCCCCAGCGACAGGCACGGTTGTGGGCT | + |
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Preference number: 5 (lower is better) Translates to: PLSVGVLAAWPVADG*CAGQEPQRQARLWA Trigger: AGCCCACAACCGTGCCTGTCGCTGGGGCTCCTGCCCTGCGCACCAGCCGTCAGCTACAGGCCAAGCTGCCAGCACACCTACAGAGAGAGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS CCA 90 bp | CCTCGAGCCACACAGGCTCCTCTCTCTGTAGGTGTGCTGGCAGCTTaGCCTGTAGCTGACGGCTGGTGCGCAGGGCAGGAGCCCCAGCGA | + |
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Preference number: 5 (lower is better) Translates to: PRATQAPLSVGVLAA*PVADGWCAGQEPQR Trigger: TCGCTGGGGCTCCTGCCCTGCGCACCAGCCGTCAGCTACAGGCCAAGCTGCCAGCACACCTACAGAGAGAGGAGCCTGTGTGGCTCGAGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS CCA 90 bp | CGCGCCCAGCAGCGAGCCAGCCAGCCTGGGTTGGGTGCAGGGTCTTaGACAGGTACAGGTAGGGTGGGCTCAGCTGGTTTGCTCAGGCCT | + |
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Preference number: 5 (lower is better) Translates to: RAQQRASQPGLGAGS*TGTGRVGSAGLLRP Trigger: AGGCCTGAGCAAACCAGCTGAGCCCACCCTACCTGTACCTGTCCAAGACCCTGCACCCAACCCAGGCTGGCTGGCTCGCTGCTGGGCGCG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS TCA 90 bp | ACAGGCTCCTCTCTCTGTAGGTGTGCTGGCAGCTTGGCCTGTAGCTaGCGGCTGGTGCGCAGGGCAGGAGCCCCAGCGACAGGCACGGTT | + |
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Preference number: 5 (lower is better) Translates to: TGSSLCRCAGSLACS*RLVRRAGAPATGTV Trigger: AACCGTGCCTGTCGCTGGGGCTCCTGCCCTGCGCACCAGCCGTCAGCTACAGGCCAAGCTGCCAGCACACCTACAGAGAGAGGAGCCTGT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS GCA 90 bp | CTGTCGGCAGAATGGACAGGGCACAGCTTCTCTGCCAGAGCGGCCTaGAGGCTGGGCAGCTGCCAGCCTAGCCAAGCACTCGAGACAGAA | + |
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Preference number: 5 (lower is better) Translates to: LSAEWTGHSFSARAA*RLGSCQPSQALETE Trigger: TTCTGTCTCGAGTGCTTGGCTAGGCTGGCAGCTGCCCAGCCTGCAGGCCGCTCTGGCAGAGAAGCTGTGCCCTGTCCATTCTGCCGACAG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS GCA 90 bp | CCTCTTGGCCAGAAGTGGTGGGCAAGGGGCGGCAACACAGTTTGGTaGCCTCGAGCCACACAGGCTCCTCTCTCTGTAGGTGTGCTGGCA | + |
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Preference number: 5 (lower is better) Translates to: PLGQKWWARGGNTVW*PRATQAPLSVGVLA Trigger: TGCCAGCACACCTACAGAGAGAGGAGCCTGTGTGGCTCGAGGGCACCAAACTGTGTTGCCGCCCCTTGCCCACCACTTCTGGCCAAGAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS CCA 90 bp | CGTCCTCTTGGCCAGAAGTGGTGGGCAAGGGGCGGCAACACAGTTTaGTGCCCTCGAGCCACACAGGCTCCTCTCTCTGTAGGTGTGCTG | + |
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Preference number: 5 (lower is better) Translates to: RPLGQKWWARGGNTV*CPRATQAPLSVGVL Trigger: CAGCACACCTACAGAGAGAGGAGCCTGTGTGGCTCGAGGGCACCAAACTGTGTTGCCGCCCCTTGCCCACCACTTCTGGCCAAGAGGACG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS CCA 90 bp | GGCCTACGTCCACACTTACAAAGCCACCGTCCTCTTGGCCAGAAGTaGTGGGCAAGGGGCGGCAACACAGTTTGGTGCCCTCGAGCCACA | + |
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Preference number: 5 (lower is better) Translates to: GLRPHLQSHRPLGQK*WARGGNTVWCPRAT Trigger: TGTGGCTCGAGGGCACCAAACTGTGTTGCCGCCCCTTGCCCACCACTTCTGGCCAAGAGGACGGTGGCTTTGTAAGTGTGGACGTAGGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS CCA 90 bp | CTACGTCCACACTTACAAAGCCACCGTCCTCTTGGCCAGAAGTGGTaGGCAAGGGGCGGCAACACAGTTTGGTGCCCTCGAGCCACACAG | + |
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Preference number: 5 (lower is better) Translates to: LRPHLQSHRPLGQKW*ARGGNTVWCPRATQ Trigger: CTGTGTGGCTCGAGGGCACCAAACTGTGTTGCCGCCCCTTGCCCACCACTTCTGGCCAAGAGGACGGTGGCTTTGTAAGTGTGGACGTAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS CCA 90 bp | GCCAGCCTGGGTTGGGTGCAGGGTCTTGGACAGGTACAGGTAGGGTaGGCTCAGCTGGTTTGCTCAGGCCTACGTCCACACTTACAAAGC | + |
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Preference number: 5 (lower is better) Translates to: ASLGWVQGLGQVQVG*AQLVCSGLRPHLQS Trigger: GCTTTGTAAGTGTGGACGTAGGCCTGAGCAAACCAGCTGAGCCCACCCTACCTGTACCTGTCCAAGACCCTGCACCCAACCCAGGCTGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS TCA 90 bp | ACTCGAGACAGAAGACGTGAGAGCAGGAAAGCTCTTTGGGTGTCTTaGAGATGTTGTCGTAGCCTGAGAAGCAGATGGAGCATTCCAATG | + |
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Preference number: 5 (lower is better) Translates to: TRDRRRESRKALWVS*RCCRSLRSRWSIPM Trigger: CATTGGAATGCTCCATCTGCTTCTCAGGCTACGACAACATCTTCAAGACACCCAAAGAGCTTTCCTGCTCTCACGTCTTCTGTCTCGAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS GCA 90 bp | GGTGGTCGGTTAATGCAACGCAGATTTCCAGTTTTGAGTGCACACTaGACAGGCCAGAGTATCACACAAAACAGCACTAGCAACAGCACA | + |
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Preference number: 5 (lower is better) Translates to: GGRLMQRRFPVLSAH*TGQSITQNSTSNST Trigger: TGTGCTGTTGCTAGTGCTGTTTTGTGTGATACTCTGGCCTGTGCAGTGTGCACTCAAAACTGGAAATCTGCGTTGCATTAACCGACCACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS CCA 72 bp | GTAGGTGTGCTGGCAGCTTGGCCTGTAGCTGACGGCTaGTGCGCAGGGCAGGAGCCCCAGCGACAGGCACGG | + |
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Preference number: 6 (lower is better) Translates to: VGVLAAWPVADG*CAGQEPQRQAR Trigger: CCGTGCCTGTCGCTGGGGCTCCTGCCCTGCGCACCAGCCGTCAGCTACAGGCCAAGCTGCCAGCACACCTAC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS CAA 90 bp | GCTGACGGCTGGTGCGCAGGGCAGGAGCCCCAGCGACAGGCACGGTaGTGGGCTGTCGGCAGAATGGACAGGGCACAGCTTCTCTGCCAG | + |
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Preference number: 6 (lower is better) Translates to: ADGWCAGQEPQRQAR*WAVGRMDRAQLLCQ Trigger: CTGGCAGAGAAGCTGTGCCCTGTCCATTCTGCCGACAGCCCACAACCGTGCCTGTCGCTGGGGCTCCTGCCCTGCGCACCAGCCGTCAGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS GCA 72 bp | TGGGCTGTCGGCAGAATGGACAGGGCACAGCTTCTCTaGCAGAGCGGCCTGCAGGCTGGGCAGCTGCCAGCC | + |
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Preference number: 6 (lower is better) Translates to: WAVGRMDRAQLL*QSGLQAGQLPA Trigger: GGCTGGCAGCTGCCCAGCCTGCAGGCCGCTCTGGCAGAGAAGCTGTGCCCTGTCCATTCTGCCGACAGCCCA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS CCA 72 bp | TGCGCAGGGCAGGAGCCCCAGCGACAGGCACGGTTGTaGGCTGTCGGCAGAATGGACAGGGCACAGCTTCTC | + |
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Preference number: 6 (lower is better) Translates to: CAGQEPQRQARL*AVGRMDRAQLL Trigger: GAGAAGCTGTGCCCTGTCCATTCTGCCGACAGCCCACAACCGTGCCTGTCGCTGGGGCTCCTGCCCTGCGCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS CAA 72 bp | TGGTGCGCAGGGCAGGAGCCCCAGCGACAGGCACGGTaGTGGGCTGTCGGCAGAATGGACAGGGCACAGCTT | + |
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Preference number: 6 (lower is better) Translates to: WCAGQEPQRQAR*WAVGRMDRAQL Trigger: AAGCTGTGCCCTGTCCATTCTGCCGACAGCCCACAACCGTGCCTGTCGCTGGGGCTCCTGCCCTGCGCACCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS TCA 72 bp | TCTCTCTGTAGGTGTGCTGGCAGCTTGGCCTGTAGCTaGCGGCTGGTGCGCAGGGCAGGAGCCCCAGCGACA | + |
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Preference number: 6 (lower is better) Translates to: SLCRCAGSLACS*RLVRRAGAPAT Trigger: TGTCGCTGGGGCTCCTGCCCTGCGCACCAGCCGTCAGCTACAGGCCAAGCTGCCAGCACACCTACAGAGAGA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS CCA 72 bp | ACACAGGCTCCTCTCTCTGTAGGTGTGCTGGCAGCTTaGCCTGTAGCTGACGGCTGGTGCGCAGGGCAGGAG | + |
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Preference number: 6 (lower is better) Translates to: TQAPLSVGVLAA*PVADGWCAGQE Trigger: CTCCTGCCCTGCGCACCAGCCGTCAGCTACAGGCCAAGCTGCCAGCACACCTACAGAGAGAGGAGCCTGTGT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS CAA 90 bp | CCGTCCTCTTGGCCAGAAGTGGTGGGCAAGGGGCGGCAACACAGTTaGGTGCCCTCGAGCCACACAGGCTCCTCTCTCTGTAGGTGTGCT | + |
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Preference number: 6 (lower is better) Translates to: PSSWPEVVGKGRQHS*VPSSHTGSSLCRCA Trigger: AGCACACCTACAGAGAGAGGAGCCTGTGTGGCTCGAGGGCACCAAACTGTGTTGCCGCCCCTTGCCCACCACTTCTGGCCAAGAGGACGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS CCA 72 bp | GGCCAGAAGTGGTGGGCAAGGGGCGGCAACACAGTTTaGTGCCCTCGAGCCACACAGGCTCCTCTCTCTGTA | + |
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Preference number: 6 (lower is better) Translates to: GQKWWARGGNTV*CPRATQAPLSV Trigger: TACAGAGAGAGGAGCCTGTGTGGCTCGAGGGCACCAAACTGTGTTGCCGCCCCTTGCCCACCACTTCTGGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS CAA 72 bp | TGGCCAGAAGTGGTGGGCAAGGGGCGGCAACACAGTTaGGTGCCCTCGAGCCACACAGGCTCCTCTCTCTGT | + |
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Preference number: 6 (lower is better) Translates to: WPEVVGKGRQHS*VPSSHTGSSLC Trigger: ACAGAGAGAGGAGCCTGTGTGGCTCGAGGGCACCAAACTGTGTTGCCGCCCCTTGCCCACCACTTCTGGCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS GCA 72 bp | CAGAAGTGGTGGGCAAGGGGCGGCAACACAGTTTGGTaGCCTCGAGCCACACAGGCTCCTCTCTCTGTAGGT | + |
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Preference number: 6 (lower is better) Translates to: QKWWARGGNTVW*PRATQAPLSVG Trigger: ACCTACAGAGAGAGGAGCCTGTGTGGCTCGAGGGCACCAAACTGTGTTGCCGCCCCTTGCCCACCACTTCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS CCA 72 bp | GGTTGGGTGCAGGGTCTTGGACAGGTACAGGTAGGGTaGGCTCAGCTGGTTTGCTCAGGCCTACGTCCACAC | + |
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Preference number: 6 (lower is better) Translates to: GWVQGLGQVQVG*AQLVCSGLRPH Trigger: GTGTGGACGTAGGCCTGAGCAAACCAGCTGAGCCCACCCTACCTGTACCTGTCCAAGACCCTGCACCCAACC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS CAA 72 bp | CAGGCCTACGTCCACACTTACAAAGCCACCGTCCTCTaGGCCAGAAGTGGTGGGCAAGGGGCGGCAACACAG | + |
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Preference number: 6 (lower is better) Translates to: QAYVHTYKATVL*ARSGGQGAATQ Trigger: CTGTGTTGCCGCCCCTTGCCCACCACTTCTGGCCAAGAGGACGGTGGCTTTGTAAGTGTGGACGTAGGCCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS CCA 72 bp | CACTTACAAAGCCACCGTCCTCTTGGCCAGAAGTGGTaGGCAAGGGGCGGCAACACAGTTTGGTGCCCTCGA | + |
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Preference number: 6 (lower is better) Translates to: HLQSHRPLGQKW*ARGGNTVWCPR Trigger: TCGAGGGCACCAAACTGTGTTGCCGCCCCTTGCCCACCACTTCTGGCCAAGAGGACGGTGGCTTTGTAAGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS CAA 72 bp | TCTTGGACAGGTACAGGTAGGGTGGGCTCAGCTGGTTaGCTCAGGCCTACGTCCACACTTACAAAGCCACCG | + |
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Preference number: 6 (lower is better) Translates to: SWTGTGRVGSAG*LRPTSTLTKPP Trigger: CGGTGGCTTTGTAAGTGTGGACGTAGGCCTGAGCAAACCAGCTGAGCCCACCCTACCTGTACCTGTCCAAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS TCA 72 bp | AAGCTCTTTGGGTGTCTTGAAGATGTTGTCGTAGCCTaGGAAGCAGATGGAGCATTCCAATGGGGAGGCCAC | + |
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Preference number: 6 (lower is better) Translates to: KLFGCLEDVVVA*EADGAFQWGGH Trigger: GTGGCCTCCCCATTGGAATGCTCCATCTGCTTCTCAGGCTACGACAACATCTTCAAGACACCCAAAGAGCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS TCA 72 bp | AGAAGACGTGAGAGCAGGAAAGCTCTTTGGGTGTCTTaGAGATGTTGTCGTAGCCTGAGAAGCAGATGGAGC | + |
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Preference number: 6 (lower is better) Translates to: RRRESRKALWVS*RCCRSLRSRWS Trigger: GCTCCATCTGCTTCTCAGGCTACGACAACATCTTCAAGACACCCAAAGAGCTTTCCTGCTCTCACGTCTTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS CAA 72 bp | GCAGGTGGTCGGTTAATGCAACGCAGATTTCCAGTTTaGAGTGCACACTGCACAGGCCAGAGTATCACACAA | + |
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Preference number: 6 (lower is better) Translates to: AGGRLMQRRFPV*SAHCTGQSITQ Trigger: TTGTGTGATACTCTGGCCTGTGCAGTGTGCACTCAAAACTGGAAATCTGCGTTGCATTAACCGACCACCTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS GCA 72 bp | TGGTCGGTTAATGCAACGCAGATTTCCAGTTTTGAGTaGACACTGCACAGGCCAGAGTATCACACAAAACAG | + |
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Preference number: 6 (lower is better) Translates to: WSVNATQISSFE*TLHRPEYHTKQ Trigger: CTGTTTTGTGTGATACTCTGGCCTGTGCAGTGTGCACTCAAAACTGGAAATCTGCGTTGCATTAACCGACCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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| CDS GCA 72 bp | TTAATGCAACGCAGATTTCCAGTTTTGAGTGCACACTaGACAGGCCAGAGTATCACACAAAACAGCACTAGC | + |
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Preference number: 6 (lower is better) Translates to: LMQRRFPVLSAH*TGQSITQNSTS Trigger: GCTAGTGCTGTTTTGTGTGATACTCTGGCCTGTGCAGTGTGCACTCAAAACTGGAAATCTGCGTTGCATTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209248.2 |
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