Pregenerated sensors for RNF222 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000046490Ensembl transcript IDs: ENSMUST00000065213.5
Found 94 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCCCCACCCATGCCCTCTCTGAGTCCAGGGCATCCCTCTGCAGTTTaGTTGTACCAGGTCTACACTAGGACCCTCTGCCCTCTCCCAAGC | + |
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Preference number: 1 (lower is better) Translates to: APPMPSLSPGHPSAV*LYQVYTRTLCPLPS Trigger: GCTTGGGAGAGGGCAGAGGGTCCTAGTGTAGACCTGGTACAATCAAACTGCAGAGGGATGCCCTGGACTCAGAGAGGGCATGGGTGGGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR CCA 90 bp | TCCTCACCCAGCTCAGCCCTAGAGAATCCACCTGGGAAACTGGCCTaGCTGGTGTGGCGTCTAATGAATGGTTGGATCATGAGGAGGTGG | + |
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Preference number: 1 (lower is better) Translates to: SSPSSALENPPGKLA*LVWRLMNGWIMRRW Trigger: CCACCTCCTCATGATCCAACCATTCATTAGACGCCACACCAGCCAGGCCAGTTTCCCAGGTGGATTCTCTAGGGCTGAGCTGGGTGAGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR TCA 90 bp | GACAAAGCCCTTAACCTTCCAACCTGGCCCCACCCATGCCCTCTCTaGGTCCAGGGCATCCCTCTGCAGTTTGATTGTACCAGGTCTACA | + |
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Preference number: 1 (lower is better) Translates to: DKALNLPTWPHPCPL*VQGIPLQFDCTRST Trigger: TGTAGACCTGGTACAATCAAACTGCAGAGGGATGCCCTGGACTCAGAGAGGGCATGGGTGGGGCCAGGTTGGAAGGTTAAGGGCTTTGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR TCA 90 bp | CAGCCCCTTTGTCACAAACGTCCCTTGTTGGATGAGGCTCTTCTCTaGTGGTCCCCAGATGTCAACCACAGCAGACATCCGAGAAGTAGC | + |
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Preference number: 1 (lower is better) Translates to: QPLCHKRPLLDEALL*WSPDVNHSRHPRSS Trigger: GCTACTTCTCGGATGTCTGCTGTGGTTGACATCTGGGGACCATCAGAGAAGAGCCTCATCCAACAAGGGACGTTTGTGACAAAGGGGCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR TCA 90 bp | GAGGCAGGTGGATCTTTGAAAGTTCAAGGCCAGTCTGGTCTGGAGTaGGTTCCAGGACAGCCAGACTATATGGAGAAATCCTGTCTCAAA | + |
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Preference number: 1 (lower is better) Translates to: EAGGSLKVQGQSGLE*VPGQPDYMEKSCLK Trigger: TTTGAGACAGGATTTCTCCATATAGTCTGGCTGTCCTGGAACTCACTCCAGACCAGACTGGCCTTGAACTTTCAAAGATCCACCTGCCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR TCA 90 bp | TTAATAAGCGATGCCAGCGGTTGTGAGTTATATTTCTTTTACAAATaGGTCTCATCTCAGGGTCTTAGGGACTTTAGGATCTGTATATTC | + |
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Preference number: 1 (lower is better) Translates to: LISDASGCELYFFYK*VSSQGLRDFRICIF Trigger: GAATATACAGATCCTAAAGTCCCTAAGACCCTGAGATGAGACTCATTTGTAAAAGAAATATAACTCACAACCGCTGGCATCGCTTATTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR CAA 90 bp | GGTACCCAAGCACTCCAGGGTACAGCGCCTGGCTATGAGCATCTGTaGAGACAGCTGACAAGCTCGGCTGCTTTCTTCCCCACCCTTCCT | + |
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Preference number: 2 (lower is better) Translates to: GTQALQGTAPGYEHL*RQLTSSAAFFPTLP Trigger: AGGAAGGGTGGGGAAGAAAGCAGCCGAGCTTGTCAGCTGTCTCAACAGATGCTCATAGCCAGGCGCTGTACCCTGGAGTGCTTGGGTACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR-3UTR GCA 90 bp | CCCAGCTCAGCCCTAGAGAATCCACCTGGGAAACTGGCCTGGCTGGTGTGGCGTTTAGATACAGGGCCTTaGTCCCCTTTCCTCTGCATG | + |
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Preference number: 2 (lower is better) Translates to: PSSALENPPGKLAWLVWRLDTGP*SPFLCM Trigger: CATGCAGAGGAAAGGGGAGCAAGGCCCTGTATCTAA...ACGCCACACCAGCCAGGCCAGTTTCCCAGGTGGATTCTCTAGGGCTGAGCTGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR-3UTR GCA 90 bp | CCCTCGAGAGCCCTAGGACTGGAAATCAGGTCTGCTCCTTCGGCCTGGCATTCTTCCAGGGCATCCCTCTaGAGTTTGATTGTACCAGGT | + |
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Preference number: 2 (lower is better) Translates to: PSRALGLEIRSAPSAWHSSRASL*SLIVPG Trigger: ACCTGGTACAATCAAACTGCAGAGGGATGCCCTGGA...AGAATGCCAGGCCGAAGGAGCAGACCTGATTTCCAGTCCTAGGGCTCTCGAGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR-3UTR CCA 90 bp | CCCTCGAGAGCCCTAGGACTGGAAATCAGGTCTGCTCCTTCGGCCTGGCATTCTTCACAGATGGAGAGTTaGCCATTCAGTGTTAGCCTC | + |
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Preference number: 2 (lower is better) Translates to: PSRALGLEIRSAPSAWHSSQMES*PFSVSL Trigger: GAGGCTAACACTGAATGGCCAACTCTCCATCTGTGA...AGAATGCCAGGCCGAAGGAGCAGACCTGATTTCCAGTCCTAGGGCTCTCGAGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR-3UTR GCA 90 bp | GTGACAGTGCTGGAAGTCTCTGCTGTTTTCAGTGACAAGGGATTAGCTTCCTCGGCTGACAAGCTCGGCTaGTTTCTTCCCCACCCTTCC | + |
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Preference number: 2 (lower is better) Translates to: VTVLEVSAVFSDKGLASSADKLG*FLPHPS Trigger: GGAAGGGTGGGGAAGAAAGCAGCCGAGCTTGTCAGC...CGAGGAAGCTAATCCCTTGTCACTGAAAACAGCAGAGACTTCCAGCACTGTCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR CAA 90 bp | TCGTGTCCAGAACCCAGTGTTCCATGCCTGGCTCATTTCCGTTTGTaGCTATATCGATTAGTGCTCTTTGGGACCGCAGGCCCTGGATCT | + |
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Preference number: 2 (lower is better) Translates to: SCPEPSVPCLAHFRL*LYRLVLFGTAGPGS Trigger: AGATCCAGGGCCTGCGGTCCCAAAGAGCACTAATCGATATAGCAACAAACGGAAATGAGCCAGGCATGGAACACTGGGTTCTGGACACGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR-3UTR CCA 90 bp | GCCTGGCTGGGGTGGACACAGACTCACAAGTCTGCAAAGTTCCTTTTGTCTCTACTGTTCCCTCCACATTaGCACAGCACCTCTGTTCTC | + |
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Preference number: 2 (lower is better) Translates to: AWLGWTQTHKSAKFLLSLLFPPH*HSTSVL Trigger: GAGAACAGAGGTGCTGTGCCAATGTGGAGGGAACAG...TAGAGACAAAAGGAACTTTGCAGACTTGTGAGTCTGTGTCCACCCCAGCCAGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR-3UTR TCA 90 bp | AGAAAAACTTGTGTCTGGCTTCAAGTTGGTCACTTGGTAGGTAAGGTTTATGACCACCCATGCCCTCTCTaGGTCCAGGGCATCCCTCTG | + |
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Preference number: 2 (lower is better) Translates to: RKTCVWLQVGHLVGKVYDHPCPL*VQGIPL Trigger: CAGAGGGATGCCCTGGACTCAGAGAGGGCATGGGTG...GTCATAAACCTTACCTACCAAGTGACCAACTTGAAGCCAGACACAAGTTTTTCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR-3UTR TCA 90 bp | GTGACAGTGCTGGAAGTCTCTGCTGTTTTCAGTGACAAGGGATTAGCTTCCTCGAAAGCCCTTACTTACTaGCTAGGGATGGAAAGGGTG | + |
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Preference number: 2 (lower is better) Translates to: VTVLEVSAVFSDKGLASSKALTY*LGMERV Trigger: CACCCTTTCCATCCCTAGTCAGTAAGTAAGGGCTTT...CGAGGAAGCTAATCCCTTGTCACTGAAAACAGCAGAGACTTCCAGCACTGTCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR-3UTR CCA 90 bp | GTGACAGTGCTGGAAGTCTCTGCTGTTTTCAGTGACAAGGGATTAGCTTCCTCGGTGGCGTCTAATGAATaGTTGGATCATGAGGAGGTG | + |
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Preference number: 2 (lower is better) Translates to: VTVLEVSAVFSDKGLASSVASNE*LDHEEV Trigger: CACCTCCTCATGATCCAACCATTCATTAGACGCCAC...CGAGGAAGCTAATCCCTTGTCACTGAAAACAGCAGAGACTTCCAGCACTGTCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR-3UTR GCA 90 bp | GTCTCATCTCAGGGTCTTAGGGACTTTAGGATCTGTATATTCTGTCTAGAGAATTACACTAGGACCCTCTaGCCTCTCCCAAGCTGTGGC | + |
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Preference number: 2 (lower is better) Translates to: VSSQGLRDFRICIFCLENYTRTL*PLPSCG Trigger: GCCACAGCTTGGGAGAGGGCAGAGGGTCCTAGTGTA...ATTCTCTAGACAGAATATACAGATCCTAAAGTCCCTAAGACCCTGAGATGAGAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR-3UTR CCA 90 bp | GTCTCATCTCAGGGTCTTAGGGACTTTAGGATCTGTATATTCTGTCTAGAGAATCTTAACCTTCCAACCTaGCCCCACCCATGCCCTCTC | + |
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Preference number: 2 (lower is better) Translates to: VSSQGLRDFRICIFCLENLNLPT*PHPCPL Trigger: GAGAGGGCATGGGTGGGGCCAGGTTGGAAGGTTAAG...ATTCTCTAGACAGAATATACAGATCCTAAAGTCCCTAAGACCCTGAGATGAGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR-3UTR CCA 90 bp | TCCACCTGGGAAACTGGCCTGGCTGGTGTGGCGTCTAATGAATGGTTGGATCATAGAAAAACTTGTGTCTaGCTTCAAGTTGGTCACTTG | + |
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Preference number: 2 (lower is better) Translates to: STWETGLAGVASNEWLDHRKTCV*LQVGHL Trigger: CAAGTGACCAACTTGAAGCCAGACACAAGTTTTTCT...ATGATCCAACCATTCATTAGACGCCACACCAGCCAGGCCAGTTTCCCAGGTGGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR-3UTR CCA 90 bp | GTGACAGTGCTGGAAGTCTCTGCTGTTTTCAGTGACAAGGGATTAGCTTCCTCGATGAGGCTAAGATGCTaGAAAACTGGATCTAGGACT | + |
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Preference number: 2 (lower is better) Translates to: VTVLEVSAVFSDKGLASSMRLRC*KTGSRT Trigger: AGTCCTAGATCCAGTTTTCCAGCATCTTAGCCTCAT...CGAGGAAGCTAATCCCTTGTCACTGAAAACAGCAGAGACTTCCAGCACTGTCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR-3UTR CCA 90 bp | GTCTCATCTCAGGGTCTTAGGGACTTTAGGATCTGTATATTCTGTCTAGAGAATCCTAGAGAATCCACCTaGGAAACTGGCCTGGCTGGT | + |
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Preference number: 2 (lower is better) Translates to: VSSQGLRDFRICIFCLENPREST*ETGLAG Trigger: ACCAGCCAGGCCAGTTTCCCAGGTGGATTCTCTAGG...ATTCTCTAGACAGAATATACAGATCCTAAAGTCCCTAAGACCCTGAGATGAGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR-3UTR TCA 90 bp | ATATGTCCAGTTTCATTGGACAGCTTTTACAAATATGCTTTTCTAGCCAGGCGGGATGAGGCTCTTCTCTaGTGGTCCCCAGATGTCAAC | + |
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Preference number: 2 (lower is better) Translates to: ICPVSLDSFYKYAFLARRDEALL*WSPDVN Trigger: GTTGACATCTGGGGACCATCAGAGAAGAGCCTCATC...CCGCCTGGCTAGAAAAGCATATTTGTAAAAGCTGTCCAATGAAACTGGACATAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR-3UTR TCA 90 bp | GTCTCATCTCAGGGTCTTAGGGACTTTAGGATCTGTATATTCTGTCTAGAGAATAGAATCTCAGGACACTaGTTAGCACAGCCTGGCTGG | + |
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Preference number: 2 (lower is better) Translates to: VSSQGLRDFRICIFCLENRISGH*LAQPGW Trigger: CCAGCCAGGCTGTGCTAATCAGTGTCCTGAGATTCT...ATTCTCTAGACAGAATATACAGATCCTAAAGTCCCTAAGACCCTGAGATGAGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR-3UTR CCA 90 bp | ATATGTCCAGTTTCATTGGACAGCTTTTACAAATATGCTTTTCTAGCCAGGCGGGGAGGGAGAGGCAGGTaGATCTTTGAAAGTTCAAGG | + |
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Preference number: 2 (lower is better) Translates to: ICPVSLDSFYKYAFLARRGGRGR*IFESSR Trigger: CCTTGAACTTTCAAAGATCCACCTGCCTCTCCCTCC...CCGCCTGGCTAGAAAAGCATATTTGTAAAAGCTGTCCAATGAAACTGGACATAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR-3UTR TCA 90 bp | GGACACAGACTCACAAGTCTGCAAAGTTCCTTTTGTCTCTATAATAAATATCGCCATCCCTCTGCAGTTTaGTTGTACCAGGTCTACACT | + |
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Preference number: 2 (lower is better) Translates to: GHRLTSLQSSFCLYNKYRHPSAV*LYQVYT Trigger: AGTGTAGACCTGGTACAATCAAACTGCAGAGGGATG...GCGATATTTATTATAGAGACAAAAGGAACTTTGCAGACTTGTGAGTCTGTGTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR-3UTR CCA 90 bp | ATATGTCCAGTTTCATTGGACAGCTTTTACAAATATGCTTTTCTAGCCAGGCGGACAAACGTCCCTTGTTaGATGAGGCTCTTCTCTGAT | + |
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Preference number: 2 (lower is better) Translates to: ICPVSLDSFYKYAFLARRTNVPC*MRLFSD Trigger: ATCAGAGAAGAGCCTCATCCAACAAGGGACGTTTGT...CCGCCTGGCTAGAAAAGCATATTTGTAAAAGCTGTCCAATGAAACTGGACATAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR-3UTR GCA 90 bp | ATATGTCCAGTTTCATTGGACAGCTTTTACAAATATGCTTTTCTAGCCAGGCGGACAGACTCACAAGTCTaGAAAGTTCCTTTTGTCTCT | + |
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Preference number: 2 (lower is better) Translates to: ICPVSLDSFYKYAFLARRTDSQV*KVPFVS Trigger: AGAGACAAAAGGAACTTTGCAGACTTGTGAGTCTGT...CCGCCTGGCTAGAAAAGCATATTTGTAAAAGCTGTCCAATGAAACTGGACATAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR-3UTR GCA 90 bp | GGACACAGACTCACAAGTCTGCAAAGTTCCTTTTGTCTCTATAATAAATATCGCTATATGAGGCTAAGATaGTGGAAAACTGGATCTAGG | + |
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Preference number: 2 (lower is better) Translates to: GHRLTSLQSSFCLYNKYRYMRLR*WKTGSR Trigger: CCTAGATCCAGTTTTCCAGCATCTTAGCCTCATATA...GCGATATTTATTATAGAGACAAAAGGAACTTTGCAGACTTGTGAGTCTGTGTCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR CCA 72 bp | CCCTTCCTCACCCAGCTCAGCCCTAGAGAATCCACCTaGGAAACTGGCCTGGCTGGTGTGGCGTCTAATGAA | + |
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Preference number: 3 (lower is better) Translates to: PFLTQLSPREST*ETGLAGVASNE Trigger: TTCATTAGACGCCACACCAGCCAGGCCAGTTTCCCAGGTGGATTCTCTAGGGCTGAGCTGGGTGAGGAAGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR-3UTR CAA 90 bp | CCCTCGAGAGCCCTAGGACTGGAAATCAGGTCTGCTCCTTCGGCCTGGCATTCTCACCCAGCTTCTAGCTaGCTATGTTCCAGCCTAGAG | + |
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Preference number: 3 (lower is better) Translates to: PSRALGLEIRSAPSAWHSHPASS*LCSSLE Trigger: CTCTAGGCTGGAACATAGCAAGCTAGAAGCTGGGTG...AGAATGCCAGGCCGAAGGAGCAGACCTGATTTCCAGTCCTAGGGCTCTCGAGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR TCA 72 bp | CTTAACCTTCCAACCTGGCCCCACCCATGCCCTCTCTaGGTCCAGGGCATCCCTCTGCAGTTTGATTGTACC | + |
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Preference number: 3 (lower is better) Translates to: LNLPTWPHPCPL*VQGIPLQFDCT Trigger: GGTACAATCAAACTGCAGAGGGATGCCCTGGACTCAGAGAGGGCATGGGTGGGGCCAGGTTGGAAGGTTAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR CCA 72 bp | AAACTGGCCTGGCTGGTGTGGCGTCTAATGAATGGTTaGATCATGAGGAGGTGGACTTGGGAGGGAGGGAGG | + |
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Preference number: 3 (lower is better) Translates to: KLAWLVWRLMNG*IMRRWTWEGGR Trigger: CCTCCCTCCCTCCCAAGTCCACCTCCTCATGATCCAACCATTCATTAGACGCCACACCAGCCAGGCCAGTTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR CCA 72 bp | TGGGAAACTGGCCTGGCTGGTGTGGCGTCTAATGAATaGTTGGATCATGAGGAGGTGGACTTGGGAGGGAGG | + |
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Preference number: 3 (lower is better) Translates to: WETGLAGVASNE*LDHEEVDLGGR Trigger: CCTCCCTCCCAAGTCCACCTCCTCATGATCCAACCATTCATTAGACGCCACACCAGCCAGGCCAGTTTCCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR CCA 72 bp | GCCCTAGGACTGGAAATCAGGTCTGCTCCTTCGGCCTaGCATTCTACAGAAACCTCCGAGGCTGTGGCTATT | + |
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Preference number: 3 (lower is better) Translates to: ALGLEIRSAPSA*HSTETSEAVAI Trigger: AATAGCCACAGCCTCGGAGGTTTCTGTAGAATGCCAGGCCGAAGGAGCAGACCTGATTTCCAGTCCTAGGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR-3UTR CAA 90 bp | GACTGGAAATCAGGTCTGCTCCTTCGGCCTGGCATTCTACAGAAACCTCCGAGGCTTAGATACAGGGCCTaGCTCCCCTTTCCTCTGCAT | + |
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Preference number: 3 (lower is better) Translates to: DWKSGLLLRPGILQKPPRLRYRA*LPFPLH Trigger: ATGCAGAGGAAAGGGGAGCAAGGCCCTGTATCTAAG...CCTCGGAGGTTTCTGTAGAATGCCAGGCCGAAGGAGCAGACCTGATTTCCAGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR CCA 72 bp | CTAGAGAATCCACCTGGGAAACTGGCCTGGCTGGTGTaGCGTCTAATGAATGGTTGGATCATGAGGAGGTGG | + |
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Preference number: 3 (lower is better) Translates to: LENPPGKLAWLV*RLMNGWIMRRW Trigger: CCACCTCCTCATGATCCAACCATTCATTAGACGCCACACCAGCCAGGCCAGTTTCCCAGGTGGATTCTCTAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR CCA 72 bp | AGCTCAGCCCTAGAGAATCCACCTGGGAAACTGGCCTaGCTGGTGTGGCGTCTAATGAATGGTTGGATCATG | + |
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Preference number: 3 (lower is better) Translates to: SSALENPPGKLA*LVWRLMNGWIM Trigger: CATGATCCAACCATTCATTAGACGCCACACCAGCCAGGCCAGTTTCCCAGGTGGATTCTCTAGGGCTGAGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR TCA 72 bp | TGTCACAAACGTCCCTTGTTGGATGAGGCTCTTCTCTaGTGGTCCCCAGATGTCAACCACAGCAGACATCCG | + |
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Preference number: 3 (lower is better) Translates to: CHKRPLLDEALL*WSPDVNHSRHP Trigger: CGGATGTCTGCTGTGGTTGACATCTGGGGACCATCAGAGAAGAGCCTCATCCAACAAGGGACGTTTGTGACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR-3UTR CAA 90 bp | GCCTGGCTGGGGTGGACACAGACTCACAAGTCTGCAAAGTTCCTTTTGTCTCTACAAGCAACAGCCCCTTaGTCACAAACGTCCCTTGTT | + |
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Preference number: 3 (lower is better) Translates to: AWLGWTQTHKSAKFLLSLQATAP*SQTSLV Trigger: AACAAGGGACGTTTGTGACAAAGGGGCTGTTGCTTG...TAGAGACAAAAGGAACTTTGCAGACTTGTGAGTCTGTGTCCACCCCAGCCAGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR TCA 72 bp | CCCCTAGCCTCTCCTCATGACAAAGCCCTTACTTACTaGCTAGGGATGGAAAGGGTGGAGACAAAGCCCTTA | + |
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Preference number: 3 (lower is better) Translates to: PLASPHDKALTY*LGMERVETKPL Trigger: TAAGGGCTTTGTCTCCACCCTTTCCATCCCTAGTCAGTAAGTAAGGGCTTTGTCATGAGGAGAGGCTAGGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR CCA 72 bp | CAGGCGGAGGTGGCACACATTTTTAATCCCAGCACTTaGGAGGGAGAGGCAGGTGGATCTTTGAAAGTTCAA | + |
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Preference number: 3 (lower is better) Translates to: QAEVAHIFNPST*EGEAGGSLKVQ Trigger: TTGAACTTTCAAAGATCCACCTGCCTCTCCCTCCCAAGTGCTGGGATTAAAAATGTGTGCCACCTCCGCCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR TCA 72 bp | GGATCTTTGAAAGTTCAAGGCCAGTCTGGTCTGGAGTaGGTTCCAGGACAGCCAGACTATATGGAGAAATCC | + |
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Preference number: 3 (lower is better) Translates to: GSLKVQGQSGLE*VPGQPDYMEKS Trigger: GGATTTCTCCATATAGTCTGGCTGTCCTGGAACTCACTCCAGACCAGACTGGCCTTGAACTTTCAAAGATCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR-3UTR CAA 90 bp | GCTAAGAGGCACAGCGGTATTTCCTTCCACACAGTGAACTTCTGTGTAGAAGTTACGGGCCAGAAAAACTaGTGTCTGGCTTCAAGTTGG | + |
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Preference number: 3 (lower is better) Translates to: AKRHSGISFHTVNFCVEVTGQKN*CLASSW Trigger: CCAACTTGAAGCCAGACACAAGTTTTTCTGGCCCGT...AACTTCTACACAGAAGTTCACTGTGTGGAAGGAAATACCGCTGTGCCTCTTAGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR GCA 72 bp | CACAGCCTGGCTGGGGTGGACACAGACTCACAAGTCTaGAAAGTTCCTTTTGTCTCTATAATAAATATCGCC | + |
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Preference number: 3 (lower is better) Translates to: HSLAGVDTDSQV*KVPFVSIINIA Trigger: GGCGATATTTATTATAGAGACAAAAGGAACTTTGCAGACTTGTGAGTCTGTGTCCACCCCAGCCAGGCTGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR GCA 72 bp | CCACAGAAATCATCGTGTCCAGAACCCAGTGTTCCATaGCTGGCTCATTTCCGTTTGTTGCTATATCGATTA | + |
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Preference number: 3 (lower is better) Translates to: PQKSSCPEPSVP*LAHFRLLLYRL Trigger: TAATCGATATAGCAACAAACGGAAATGAGCCAGGCATGGAACACTGGGTTCTGGACACGATGATTTCTGTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR-3UTR CAA 90 bp | AGAAAAACTTGTGTCTGGCTTCAAGTTGGTCACTTGGTAGGTAAGGTTTATGACGCATCCCTCTGCAGTTaGATTGTACCAGGTCTACAC | + |
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Preference number: 3 (lower is better) Translates to: RKTCVWLQVGHLVGKVYDASLCS*IVPGLH Trigger: GTGTAGACCTGGTACAATCAAACTGCAGAGGGATGC...GTCATAAACCTTACCTACCAAGTGACCAACTTGAAGCCAGACACAAGTTTTTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR-3UTR CAA 90 bp | ATATGTCCAGTTTCATTGGACAGCTTTTACAAATATGCTTTTCTAGCCAGGCGGGCGTCTAATGAATGGTaGGATCATGAGGAGGTGGAC | + |
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Preference number: 3 (lower is better) Translates to: ICPVSLDSFYKYAFLARRASNEW*DHEEVD Trigger: GTCCACCTCCTCATGATCCAACCATTCATTAGACGC...CCGCCTGGCTAGAAAAGCATATTTGTAAAAGCTGTCCAATGAAACTGGACATAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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| 3UTR TCA 72 bp | GATGCCAGCGGTTGTGAGTTATATTTCTTTTACAAATaGGTCTCATCTCAGGGTCTTAGGGACTTTAGGATC | + |
|
Preference number: 3 (lower is better) Translates to: DASGCELYFFYK*VSSQGLRDFRI Trigger: GATCCTAAAGTCCCTAAGACCCTGAGATGAGACTCATTTGTAAAAGAAATATAACTCACAACCGCTGGCATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| 3UTR TCA 72 bp | TCTAGAACACAAATTGCTGGGCCAAAGTGGAAACTCTaGGAGATGATATGTCCAGTTTCATTGGACAGCTTT | + |
|
Preference number: 3 (lower is better) Translates to: SRTQIAGPKWKL*EMICPVSLDSF Trigger: AAAGCTGTCCAATGAAACTGGACATATCATCTCTCAGAGTTTCCACTTTGGCCCAGCAATTTGTGTTCTAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| 3UTR GCA 72 bp | GATATGTCCAGTTTCATTGGACAGCTTTTACAAATATaGTTTTCTAGCCAGGCGGAGGTGGCACACATTTTT | + |
|
Preference number: 3 (lower is better) Translates to: DMSSFIGQLLQI*FSSQAEVAHIF Trigger: AAAAATGTGTGCCACCTCCGCCTGGCTAGAAAAGCATATTTGTAAAAGCTGTCCAATGAAACTGGACATATC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| 3UTR-3UTR CAA 90 bp | GTCTCATCTCAGGGTCTTAGGGACTTTAGGATCTGTATATTCTGTCTAGAGAATAAGAGTCTACACACATaGCAAAGGTCTCTGGACTTT | + |
|
Preference number: 3 (lower is better) Translates to: VSSQGLRDFRICIFCLENKSLHT*QRSLDF Trigger: AAAGTCCAGAGACCTTTGCAATGTGTGTAGACTCTT...ATTCTCTAGACAGAATATACAGATCCTAAAGTCCCTAAGACCCTGAGATGAGAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| 3UTR TCA 72 bp | GGCAGAACAGGATTTAATAAGCGATGCCAGCGGTTGTaGGTTATATTTCTTTTACAAATGAGTCTCATCTCA | + |
|
Preference number: 3 (lower is better) Translates to: GRTGFNKRCQRL*VIFLLQMSLIS Trigger: TGAGATGAGACTCATTTGTAAAAGAAATATAACTCACAACCGCTGGCATCGCTTATTAAATCCTGTTCTGCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| CDS-3UTR GCA 90 bp | CCCAGCTCAGCCCTAGAGAATCCACCTGGGAAACTGGCCTGGCTGGTGTGGCGTACACAGGGCACTCGCTaGCCGAGCTGTCCTTGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: PSSALENPPGKLAWLVWRTQGTR*PSCPCF Trigger: GAAGCAAGGACAGCTCGGGCAGCGAGTGCCCTGTGT...ACGCCACACCAGCCAGGCCAGTTTCCCAGGTGGATTCTCTAGGGCTGAGCTGGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| CDS-3UTR CCA 90 bp | GACTGGAAATCAGGTCTGCTCCTTCGGCCTGGCATTCTACAGAAACCTCCGAGGGGTCTGGTGAGGGCGTaGAGGGCAGGCCCACAGGCA | + |
|
Preference number: 4 (lower is better) Translates to: DWKSGLLLRPGILQKPPRGLVRA*RAGPQA Trigger: TGCCTGTGGGCCTGCCCTCCACGCCCTCACCAGACC...CCTCGGAGGTTTCTGTAGAATGCCAGGCCGAAGGAGCAGACCTGATTTCCAGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| CDS-3UTR GCA 90 bp | GGGTTAATTTGCTCACATAGCTCTCAACTGACTCAGGTCTCACCTGGAGGCCGTCGCAGCTCAGCGTCCTaGTGGCGCCGTCCAGATCCC | + |
|
Preference number: 4 (lower is better) Translates to: GLICSHSSQLTQVSPGGRRSSAS*WRRPDP Trigger: GGGATCTGGACGGCGCCAGCAGGACGCTGAGCTGCG...ACGGCCTCCAGGTGAGACCTGAGTCAGTTGAGAGCTATGTGAGCAAATTAACCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| CDS-3UTR CCA 90 bp | CCCTCGAGAGCCCTAGGACTGGAAATCAGGTCTGCTCCTTCGGCCTGGCATTCTTCATGGCAGAACACATaGCCGCAGCTCAGCGTCCTG | + |
|
Preference number: 4 (lower is better) Translates to: PSRALGLEIRSAPSAWHSSWQNT*PQLSVL Trigger: CAGGACGCTGAGCTGCGGCCATGTGTTCTGCCATGA...AGAATGCCAGGCCGAAGGAGCAGACCTGATTTCCAGTCCTAGGGCTCTCGAGGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| CDS-3UTR GCA 90 bp | GACTGGAAATCAGGTCTGCTCCTTCGGCCTGGCATTCTACAGAAACCTCCGAGGAAATCTCTGCCAGGCTaGGTCGGGGCAGCACGCTGT | + |
|
Preference number: 4 (lower is better) Translates to: DWKSGLLLRPGILQKPPRKSLPG*VGAARC Trigger: ACAGCGTGCTGCCCCGACGCAGCCTGGCAGAGATTT...CCTCGGAGGTTTCTGTAGAATGCCAGGCCGAAGGAGCAGACCTGATTTCCAGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| CDS-3UTR CCA 90 bp | GGAGGTGGGAGCCCCCAGGGGTTAATTTGCTCACATAGCTCTCAACTGACTCAGAGCTCTTGTCCAGCATaGAGGGCCAGCGGGAGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: GGGSPQGLICSHSSQLTQSSCPA*RASGSS Trigger: AGAGCTCCCGCTGGCCCTCCATGCTGGACAAGAGCT...CTGAGTCAGTTGAGAGCTATGTGAGCAAATTAACCCCTGGGGGCTCCCACCTCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| CDS-3UTR CCA 90 bp | GGGTTAATTTGCTCACATAGCTCTCAACTGACTCAGGTCTCACCTGGAGGCCGTAGCAGAAAGAGCGGGTaGCGCTGGGAGCCGGGGATG | + |
|
Preference number: 4 (lower is better) Translates to: GLICSHSSQLTQVSPGGRSRKSG*RWEPGM Trigger: CATCCCCGGCTCCCAGCGCCACCCGCTCTTTCTGCT...ACGGCCTCCAGGTGAGACCTGAGTCAGTTGAGAGCTATGTGAGCAAATTAACCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| 3UTR CAA 72 bp | ACTCAGGTCTCACCTGGAGGCCGTCCCCTCCACCACTaGTCTTCTATTTCACCCTCGAGAGCCCTAGGACTG | + |
|
Preference number: 4 (lower is better) Translates to: TQVSPGGRPLHH*SSISPSRALGL Trigger: CAGTCCTAGGGCTCTCGAGGGTGAAATAGAAGACAAGTGGTGGAGGGGACGGCCTCCAGGTGAGACCTGAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| 3UTR CAA 72 bp | GCACTCCAGGGTACAGCGCCTGGCTATGAGCATCTGTaGAGACAGCTGACAAGCTCGGCTGCTTTCTTCCCC | + |
|
Preference number: 4 (lower is better) Translates to: ALQGTAPGYEHL*RQLTSSAAFFP Trigger: GGGGAAGAAAGCAGCCGAGCTTGTCAGCTGTCTCAACAGATGCTCATAGCCAGGCGCTGTACCCTGGAGTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| 3UTR CAA 72 bp | GAAACTGGCCTGGCTGGTGTGGCGTCTAATGAATGGTaGGATCATGAGGAGGTGGACTTGGGAGGGAGGGAG | + |
|
Preference number: 4 (lower is better) Translates to: ETGLAGVASNEW*DHEEVDLGGRE Trigger: CTCCCTCCCTCCCAAGTCCACCTCCTCATGATCCAACCATTCATTAGACGCCACACCAGCCAGGCCAGTTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| 3UTR CAA 72 bp | CCTCCACAGTGTGCGGCTGAAAACATCGCAGGCATTTaGGGAAGAGTCTCCGCAAACACGGCAGGATCCGGA | + |
|
Preference number: 4 (lower is better) Translates to: PPQCAAENIAGI*GRVSANTAGSG Trigger: TCCGGATCCTGCCGTGTTTGCGGAGACTCTTCCCAAAATGCCTGCGATGTTTTCAGCCGCACACTGTGGAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| CDS-3UTR GCA 90 bp | TCTTCTATTTCACCCTCGAGAGCCCTAGGACTGGAAATCAGGTCTGCTCCTTCGGGCACAGTCAGGGTCTaGGAGCTCTTGTCCAGCATG | + |
|
Preference number: 4 (lower is better) Translates to: SSISPSRALGLEIRSAPSGTVRV*ELLSSM Trigger: CATGCTGGACAAGAGCTCGCAGACCCTGACTGTGCC...CGAAGGAGCAGACCTGATTTCCAGTCCTAGGGCTCTCGAGGGTGAAATAGAAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| CDS-3UTR CCA 90 bp | GTGACAGTGCTGGAAGTCTCTGCTGTTTTCAGTGACAAGGGATTAGCTTCCTCGATTCTCGAGGCAGGCTaGGCAGCAGGTCCAAGGGGA | + |
|
Preference number: 4 (lower is better) Translates to: VTVLEVSAVFSDKGLASSILEAG*AAGPRG Trigger: TCCCCTTGGACCTGCTGCCCAGCCTGCCTCGAGAAT...CGAGGAAGCTAATCCCTTGTCACTGAAAACAGCAGAGACTTCCAGCACTGTCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| CDS-3UTR CCA 90 bp | GGAGGTGGGAGCCCCCAGGGGTTAATTTGCTCACATAGCTCTCAACTGACTCAGTGTCTCCAGACCTGGTaGGAAATAACCAGGGGGTTT | + |
|
Preference number: 4 (lower is better) Translates to: GGGSPQGLICSHSSQLTQCLQTW*EITRGF Trigger: AAACCCCCTGGTTATTTCCCACCAGGTCTGGAGACA...CTGAGTCAGTTGAGAGCTATGTGAGCAAATTAACCCCTGGGGGCTCCCACCTCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| CDS-3UTR CCA 90 bp | GCTGTATCACGGAGACACATTTCTAGAACACAAATTGCTGGGCCAAAGTGGAAAGCACCCAGGGCAGGATaGCAGCTACCACAGCCACCA | + |
|
Preference number: 4 (lower is better) Translates to: AVSRRHISRTQIAGPKWKAPRAG*QLPQPP Trigger: TGGTGGCTGTGGTAGCTGCCATCCTGCCCTGGGTGC...TTTCCACTTTGGCCCAGCAATTTGTGTTCTAGAAATGTGTCTCCGTGATACAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| CDS-3UTR CCA 90 bp | ATATGTCCAGTTTCATTGGACAGCTTTTACAAATATGCTTTTCTAGCCAGGCGGAGCTCAGCGTCCTGCTaGCGCCGTCCAGATCCCGGA | + |
|
Preference number: 4 (lower is better) Translates to: ICPVSLDSFYKYAFLARRSSASC*RRPDPG Trigger: TCCGGGATCTGGACGGCGCCAGCAGGACGCTGAGCT...CCGCCTGGCTAGAAAAGCATATTTGTAAAAGCTGTCCAATGAAACTGGACATAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| 3UTR CAA 72 bp | GAACCCAGTGTTCCATGCCTGGCTCATTTCCGTTTGTaGCTATATCGATTAGTGCTCTTTGGGACCGCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: EPSVPCLAHFRL*LYRLVLFGTAG Trigger: GCCTGCGGTCCCAAAGAGCACTAATCGATATAGCAACAAACGGAAATGAGCCAGGCATGGAACACTGGGTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| CDS-3UTR TCA 90 bp | GCTAAGAGGCACAGCGGTATTTCCTTCCACACAGTGAACTTCTGTGTAGAAGTTGATGATGAAAATCTGTaGTTCTCGAGGCAGGCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: AKRHSGISFHTVNFCVEVDDENL*FSRQAG Trigger: CCCAGCCTGCCTCGAGAATCACAGATTTTCATCATC...AACTTCTACACAGAAGTTCACTGTGTGGAAGGAAATACCGCTGTGCCTCTTAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| 3UTR CAA 72 bp | GCCAGAAAAACTTGTGTCTGGCTTCAAGTTGGTCACTaGGTAGGTAAGGTTTATGACCCTGTAGGAGAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: ARKTCVWLQVGH*VGKVYDPVGEQ Trigger: CTGCTCTCCTACAGGGTCATAAACCTTACCTACCAAGTGACCAACTTGAAGCCAGACACAAGTTTTTCTGGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| CDS-3UTR CCA 90 bp | AGAAAAACTTGTGTCTGGCTTCAAGTTGGTCACTTGGTAGGTAAGGTTTATGACTTGACCAAGCAGTCATaGCAGAACACATGGCCGCAG | + |
|
Preference number: 4 (lower is better) Translates to: RKTCVWLQVGHLVGKVYDLTKQS*QNTWPQ Trigger: CTGCGGCCATGTGTTCTGCCATGACTGCTTGGTCAA...GTCATAAACCTTACCTACCAAGTGACCAACTTGAAGCCAGACACAAGTTTTTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| CDS TCA 90 bp | CCGGCAGCAGAAAGAGCGGGTGGCGCTGGGAGCCGGGGATGCCTCTaGAATCTCTGCCAGGCTGCGTCGGGGCAGCACGCTGTCCTGTTC | + |
|
Preference number: 5 (lower is better) Translates to: PAAERAGGAGSRGCL*NLCQAASGQHAVLF Trigger: GAACAGGACAGCGTGCTGCCCCGACGCAGCCTGGCAGAGATTTCAGAGGCATCCCCGGCTCCCAGCGCCACCCGCTCTTTCTGCTGCCGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| CDS GCA 90 bp | TCTGGTGAGGGCGTGGAGGGCAGGCCCACAGGCACAGTCAGGGTCTaGGAGCTCTTGTCCAGCATGGAGGGCCAGCGGGAGCTCTTCTTG | + |
|
Preference number: 5 (lower is better) Translates to: SGEGVEGRPTGTVRV*ELLSSMEGQRELFL Trigger: CAAGAAGAGCTCCCGCTGGCCCTCCATGCTGGACAAGAGCTCGCAGACCCTGACTGTGCCTGTGGGCCTGCCCTCCACGCCCTCACCAGA 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| CDS CCA 90 bp | GATGATTGTCTCCAGACCTGGTGGGAAATAACCAGGGGGTTTGTGTaGCCTCCGCGGTCTGGTGAGGGCGTGGAGGGCAGGCCCACAGGC | + |
|
Preference number: 5 (lower is better) Translates to: DDCLQTWWEITRGFV*PPRSGEGVEGRPTG Trigger: GCCTGTGGGCCTGCCCTCCACGCCCTCACCAGACCGCGGAGGCCACACAAACCCCCTGGTTATTTCCCACCAGGTCTGGAGACAATCATC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| CDS CCA 90 bp | CGGGTAGAGAGCAGGTACTTGACCAAGCAGTCATGGCAGAACACATaGCCGCAGCTCAGCGTCCTGCTGGCGCCGTCCAGATCCCGGAAC | + |
|
Preference number: 5 (lower is better) Translates to: RVESRYLTKQSWQNT*PQLSVLLAPSRSRN Trigger: GTTCCGGGATCTGGACGGCGCCAGCAGGACGCTGAGCTGCGGCCATGTGTTCTGCCATGACTGCTTGGTCAAGTACCTGCTCTCTACCCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| CDS CCA 90 bp | CCAAGCAGTCATGGCAGAACACATGGCCGCAGCTCAGCGTCCTGCTaGCGCCGTCCAGATCCCGGAACTTCTCATAGCACACAGGGCACT | + |
|
Preference number: 5 (lower is better) Translates to: PSSHGRTHGRSSASC*RRPDPGTSHSTQGT Trigger: AGTGCCCTGTGTGCTATGAGAAGTTCCGGGATCTGGACGGCGCCAGCAGGACGCTGAGCTGCGGCCATGTGTTCTGCCATGACTGCTTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| CDS CCA 90 bp | TGTCCATCCACTCGGGTAGAGAGCAGGTACTTGACCAAGCAGTCATaGCAGAACACATGGCCGCAGCTCAGCGTCCTGCTGGCGCCGTCC | + |
|
Preference number: 5 (lower is better) Translates to: CPSTRVESRYLTKQS*QNTWPQLSVLLAPS Trigger: GGACGGCGCCAGCAGGACGCTGAGCTGCGGCCATGTGTTCTGCCATGACTGCTTGGTCAAGTACCTGCTCTCTACCCGAGTGGATGGACA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| CDS-3UTR CAA 90 bp | GGGTTAATTTGCTCACATAGCTCTCAACTGACTCAGGTCTCACCTGGAGGCCGTAGGGTCTGCGAGCTCTaGTCCAGCATGGAGGGCCAG | + |
|
Preference number: 5 (lower is better) Translates to: GLICSHSSQLTQVSPGGRRVCEL*SSMEGQ Trigger: CTGGCCCTCCATGCTGGACAAGAGCTCGCAGACCCT...ACGGCCTCCAGGTGAGACCTGAGTCAGTTGAGAGCTATGTGAGCAAATTAACCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| CDS TCA 90 bp | ATCTGTGATTCTCGAGGCAGGCTGGGCAGCAGGTCCAAGGGGACCTaGGACCCTTGGCTTGATGATTGTCTCCAGACCTGGTGGGAAATA | + |
|
Preference number: 5 (lower is better) Translates to: ICDSRGRLGSRSKGT*DPWLDDCLQTWWEI Trigger: TATTTCCCACCAGGTCTGGAGACAATCATCAAGCCAAGGGTCTCAGGTCCCCTTGGACCTGCTGCCCAGCCTGCCTCGAGAATCACAGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| CDS-3UTR CAA 90 bp | AGGACACGGGCCAGAAAAACTTGTGTCTGGCTTCAAGTTGGTCACTTGGTAGGTCCTGAGACCCTTGGCTaGATGATTGTCTCCAGACCT | + |
|
Preference number: 5 (lower is better) Translates to: RTRARKTCVWLQVGHLVGPETLG*MIVSRP Trigger: AGGTCTGGAGACAATCATCAAGCCAAGGGTCTCAGG...ACCTACCAAGTGACCAACTTGAAGCCAGACACAAGTTTTTCTGGCCCGTGTCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| CDS-3UTR CAA 90 bp | AGAAAAACTTGTGTCTGGCTTCAAGTTGGTCACTTGGTAGGTAAGGTTTATGACGTAGAGAGCAGGTACTaGACCAAGCAGTCATGGCAG | + |
|
Preference number: 5 (lower is better) Translates to: RKTCVWLQVGHLVGKVYDVESRY*TKQSWQ Trigger: CTGCCATGACTGCTTGGTCAAGTACCTGCTCTCTAC...GTCATAAACCTTACCTACCAAGTGACCAACTTGAAGCCAGACACAAGTTTTTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| CDS GCA 72 bp | GGCGTGGAGGGCAGGCCCACAGGCACAGTCAGGGTCTaGGAGCTCTTGTCCAGCATGGAGGGCCAGCGGGAG | + |
|
Preference number: 6 (lower is better) Translates to: GVEGRPTGTVRV*ELLSSMEGQRE Trigger: CTCCCGCTGGCCCTCCATGCTGGACAAGAGCTCGCAGACCCTGACTGTGCCTGTGGGCCTGCCCTCCACGCC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| CDS TCA 72 bp | GAAAGAGCGGGTGGCGCTGGGAGCCGGGGATGCCTCTaGAATCTCTGCCAGGCTGCGTCGGGGCAGCACGCT | + |
|
Preference number: 6 (lower is better) Translates to: ERAGGAGSRGCL*NLCQAASGQHA Trigger: AGCGTGCTGCCCCGACGCAGCCTGGCAGAGATTTCAGAGGCATCCCCGGCTCCCAGCGCCACCCGCTCTTTC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| CDS CCA 72 bp | GGGCACGAGACCGGCAGCAGAAAGAGCGGGTGGCGCTaGGAGCCGGGGATGCCTCTGAAATCTCTGCCAGGC | + |
|
Preference number: 6 (lower is better) Translates to: GHETGSRKSGWR*EPGMPLKSLPG Trigger: GCCTGGCAGAGATTTCAGAGGCATCCCCGGCTCCCAGCGCCACCCGCTCTTTCTGCTGCCGGTCTCGTGCCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| CDS CCA 72 bp | CTCCAGACCTGGTGGGAAATAACCAGGGGGTTTGTGTaGCCTCCGCGGTCTGGTGAGGGCGTGGAGGGCAGG | + |
|
Preference number: 6 (lower is better) Translates to: LQTWWEITRGFV*PPRSGEGVEGR Trigger: CCTGCCCTCCACGCCCTCACCAGACCGCGGAGGCCACACAAACCCCCTGGTTATTTCCCACCAGGTCTGGAG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| CDS TCA 72 bp | TCTCGAGGCAGGCTGGGCAGCAGGTCCAAGGGGACCTaGGACCCTTGGCTTGATGATTGTCTCCAGACCTGG | + |
|
Preference number: 6 (lower is better) Translates to: SRGRLGSRSKGT*DPWLDDCLQTW Trigger: CCAGGTCTGGAGACAATCATCAAGCCAAGGGTCTCAGGTCCCCTTGGACCTGCTGCCCAGCCTGCCTCGAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| CDS GCA 72 bp | AGTCATGGCAGAACACATGGCCGCAGCTCAGCGTCCTaGTGGCGCCGTCCAGATCCCGGAACTTCTCATAGC | + |
|
Preference number: 6 (lower is better) Translates to: SHGRTHGRSSAS*WRRPDPGTSHS Trigger: GCTATGAGAAGTTCCGGGATCTGGACGGCGCCAGCAGGACGCTGAGCTGCGGCCATGTGTTCTGCCATGACT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| CDS CCA 72 bp | CATGGCAGAACACATGGCCGCAGCTCAGCGTCCTGCTaGCGCCGTCCAGATCCCGGAACTTCTCATAGCACA | + |
|
Preference number: 6 (lower is better) Translates to: HGRTHGRSSASC*RRPDPGTSHST Trigger: TGTGCTATGAGAAGTTCCGGGATCTGGACGGCGCCAGCAGGACGCTGAGCTGCGGCCATGTGTTCTGCCATG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| CDS CCA 72 bp | AGCAGGTACTTGACCAAGCAGTCATGGCAGAACACATaGCCGCAGCTCAGCGTCCTGCTGGCGCCGTCCAGA | + |
|
Preference number: 6 (lower is better) Translates to: SRYLTKQSWQNT*PQLSVLLAPSR Trigger: TCTGGACGGCGCCAGCAGGACGCTGAGCTGCGGCCATGTGTTCTGCCATGACTGCTTGGTCAAGTACCTGCT 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| CDS CCA 72 bp | GGCAGCACGCTGTCCTGTTCCCCCAGCGGCATCCCGTaGCGACTGATGATGAAAATCTGTGATTCTCGAGGC | + |
|
Preference number: 6 (lower is better) Translates to: GSTLSCSPSGIP*RLMMKICDSRG Trigger: GCCTCGAGAATCACAGATTTTCATCATCAGTCGCCACGGGATGCCGCTGGGGGAACAGGACAGCGTGCTGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| CDS CCA 72 bp | ACTCGGGTAGAGAGCAGGTACTTGACCAAGCAGTCATaGCAGAACACATGGCCGCAGCTCAGCGTCCTGCTG | + |
|
Preference number: 6 (lower is better) Translates to: TRVESRYLTKQS*QNTWPQLSVLL Trigger: CAGCAGGACGCTGAGCTGCGGCCATGTGTTCTGCCATGACTGCTTGGTCAAGTACCTGCTCTCTACCCGAGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| CDS CAA 90 bp | ATAGTCCTCTGCACCTGTCCATCCACTCGGGTAGAGAGCAGGTACTaGACCAAGCAGTCATGGCAGAACACATGGCCGCAGCTCAGCGTC | + |
|
Preference number: 6 (lower is better) Translates to: IVLCTCPSTRVESRY*TKQSWQNTWPQLSV Trigger: GACGCTGAGCTGCGGCCATGTGTTCTGCCATGACTGCTTGGTCAAGTACCTGCTCTCTACCCGAGTGGATGGACAGGTGCAGAGGACTAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
||
| CDS CAA 72 bp | TGCACCTGTCCATCCACTCGGGTAGAGAGCAGGTACTaGACCAAGCAGTCATGGCAGAACACATGGCCGCAG | + |
|
Preference number: 6 (lower is better) Translates to: CTCPSTRVESRY*TKQSWQNTWPQ Trigger: CTGCGGCCATGTGTTCTGCCATGACTGCTTGGTCAAGTACCTGCTCTCTACCCGAGTGGATGGACAGGTGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065213.5 |
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