RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RNF212 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000055385

Ensembl transcript IDs: ENSMUST00000196652.5, ENSMUST00000212176.2, ENSMUST00000212212.2

Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GATCCTGCACACTGTCTCTGCAGCAGGCCTGAGATACTGATGGGCTaGCGAGGTGGTCCTGTCCATGAACTGCTGACACTGGGGGAAGGC +
Preference number: 1 (lower is better)
Translates to: DPAHCLCSRPEILMG*RGGPVHELLTLGEG
Trigger: GCCTTCCCCCAGTGTCAGCAGTTCATGGACAGGACCACCTCGGCAGCCCATCAGTATCTCAGGCCTGCTGCAGAGACAGTGTGCAGGATC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000212176.2
3UTR TCA 90 bp AGATGCTGGGGTCCCCTGCAGGTGACGCTGCCCATGCGTCCATCCTaGGGTGGACTAATCACAGAGATTCTTGAAGGGCCTGCTGACATC +
Preference number: 1 (lower is better)
Translates to: RCWGPLQVTLPMRPS*GGLITEILEGPADI
Trigger: GATGTCAGCAGGCCCTTCAAGAATCTCTGTGATTAGTCCACCTCAGGATGGACGCATGGGCAGCGTCACCTGCAGGGGACCCCAGCATCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212176.2
3UTR GCA 90 bp TATTGGAGTTTGTATGTTTTCATCTTTGGAACAGGATCTGGGAATTaGCACATTGTCTGTTATGACTTTCTATATTGTCTGAGTTGTTGG +
Preference number: 1 (lower is better)
Translates to: YWSLYVFIFGTGSGN*HIVCYDFLYCLSCW
Trigger: CCAACAACTCAGACAATATAGAAAGTCATAACAGACAATGTGGCAATTCCCAGATCCTGTTCCAAAGATGAAAACATACAAACTCCAATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212176.2
3UTR-3UTR CCA 90 bp GTGATGCTGGAGGTGGTGACAGCTCCTTGTAGGGCATCTGCAATGGTGGGACTCGCGTCCATCCTGAGGTaGACTAATCACAGAGATTCT +
Preference number: 2 (lower is better)
Translates to: VMLEVVTAPCRASAMVGLASILR*TNHRDS
Trigger: AGAATCTCTGTGATTAGTCCACCTCAGGATGGACGC...GAGTCCCACCATTGCAGATGCCCTACAAGGAGCTGTCACCACCTCCAGCATCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212176.2
3UTR-3UTR GCA 90 bp GTGATGCTGGAGGTGGTGACAGCTCCTTGTAGGGCATCTGCAATGGTGGGACTCACAGGATCTGGGAATTaGCACATTGTCTGTTATGAC +
Preference number: 2 (lower is better)
Translates to: VMLEVVTAPCRASAMVGLTGSGN*HIVCYD
Trigger: GTCATAACAGACAATGTGGCAATTCCCAGATCCTGT...GAGTCCCACCATTGCAGATGCCCTACAAGGAGCTGTCACCACCTCCAGCATCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212176.2
3UTR-3UTR CCA 90 bp CAATGGTGGGACTCTGCTAGCCTTTGTCATGCTTGCATGGCTGGGTGTCAAGCTCTTTGGAACAGGATCTaGGAATTGCCACATTGTCTG +
Preference number: 2 (lower is better)
Translates to: QWWDSASLCHACMAGCQALWNRI*ELPHCL
Trigger: CAGACAATGTGGCAATTCCCAGATCCTGTTCCAAAG...AGCTTGACACCCAGCCATGCAAGCATGACAAAGGCTAGCAGAGTCCCACCATTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212176.2
3UTR-3UTR CCA 90 bp CATCTGCAATGGTGGGACTCTGCTAGCCTTTGTCATGCTTGCATGGCTGGGTGTCAGGGAGTGAAGAGTTaGGTGGTAGAAAGAGATATC +
Preference number: 2 (lower is better)
Translates to: HLQWWDSASLCHACMAGCQGVKS*VVERDI
Trigger: GATATCTCTTTCTACCACCCAACTCTTCACTCCCTG...ACACCCAGCCATGCAAGCATGACAAAGGCTAGCAGAGTCCCACCATTGCAGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212176.2
3UTR CAA 90 bp CTGACATCTCAGGCTTTCTTGCTGGAGGAGTCAGGTCAATGTCCATaGACTCTATTCTGTCAGGGAGTGAAGAGTTGGGTGGTAGAAAGA +
Preference number: 2 (lower is better)
Translates to: LTSQAFLLEESGQCP*TLFCQGVKSWVVER
Trigger: TCTTTCTACCACCCAACTCTTCACTCCCTGACAGAATAGAGTCAATGGACATTGACCTGACTCCTCCAGCAAGAAAGCCTGAGATGTCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212176.2
3UTR-3UTR TCA 90 bp GGACTAATCACAGAGATTCTTGAAGGGCCTGCTGACATCTCAGGCTTTCTTGCTCAGGTCAATGTCCATTaGCTCTATTCTGTCAGGGAG +
Preference number: 2 (lower is better)
Translates to: GLITEILEGPADISGFLAQVNVH*LYSVRE
Trigger: CTCCCTGACAGAATAGAGTCAATGGACATTGACCTG...AGCAAGAAAGCCTGAGATGTCAGCAGGCCCTTCAAGAATCTCTGTGATTAGTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212176.2
3UTR CAA 90 bp GTCAGGTCAATGTCCATTGACTCTATTCTGTCAGGGAGTGAAGAGTaGGGTGGTAGAAAGAGATATCCATTTGGCTTTGTTGAAACTGAA +
Preference number: 2 (lower is better)
Translates to: VRSMSIDSILSGSEE*GGRKRYPFGFVETE
Trigger: TTCAGTTTCAACAAAGCCAAATGGATATCTCTTTCTACCACCCAACTCTTCACTCCCTGACAGAATAGAGTCAATGGACATTGACCTGAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212176.2
3UTR CAA 90 bp GCCCAGAAAGAATGTCTGGATATTGGAGTTTGTATGTTTTCATCTTaGGAACAGGATCTGGGAATTGCCACATTGTCTGTTATGACTTTC +
Preference number: 2 (lower is better)
Translates to: AQKECLDIGVCMFSS*EQDLGIATLSVMTF
Trigger: GAAAGTCATAACAGACAATGTGGCAATTCCCAGATCCTGTTCCAAAGATGAAAACATACAAACTCCAATATCCAGACATTCTTTCTGGGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212176.2
3UTR GCA 72 bp ATCCCCCTAGGGGATGCTGATCCTGCACACTGTCTCTaGAGCAGGCCTGAGATACTGATGGGCTGCCGAGGT +
Preference number: 3 (lower is better)
Translates to: IPLGDADPAHCL*SRPEILMGCRG
Trigger: ACCTCGGCAGCCCATCAGTATCTCAGGCCTGCTGCAGAGACAGTGTGCAGGATCAGCATCCCCTAGGGGGAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000212176.2
3UTR TCA 72 bp GGTCCCCTGCAGGTGACGCTGCCCATGCGTCCATCCTaGGGTGGACTAATCACAGAGATTCTTGAAGGGCCT +
Preference number: 3 (lower is better)
Translates to: GPLQVTLPMRPS*GGLITEILEGP
Trigger: AGGCCCTTCAAGAATCTCTGTGATTAGTCCACCTCAGGATGGACGCATGGGCAGCGTCACCTGCAGGGGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212176.2
3UTR TCA 72 bp ATCCTGCACACTGTCTCTGCAGCAGGCCTGAGATACTaGTGGGCTGCCGAGGTGGTCCTGTCCATGAACTGC +
Preference number: 3 (lower is better)
Translates to: ILHTVSAAGLRY*WAAEVVLSMNC
Trigger: GCAGTTCATGGACAGGACCACCTCGGCAGCCCATCAGTATCTCAGGCCTGCTGCAGAGACAGTGTGCAGGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212176.2
3UTR GCA 72 bp CACTGTCTCTGCAGCAGGCCTGAGATACTGATGGGCTaGCGAGGTGGTCCTGTCCATGAACTGCTGACACTG +
Preference number: 3 (lower is better)
Translates to: HCLCSRPEILMG*RGGPVHELLTL
Trigger: CAGTGTCAGCAGTTCATGGACAGGACCACCTCGGCAGCCCATCAGTATCTCAGGCCTGCTGCAGAGACAGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212176.2
3UTR GCA 72 bp CTGCAATGGTGGGACTCTGCTAGCCTTTGTCATGCTTaGATGGCTGGGTGTCAAGCTAAGATGCTGGGGTCC +
Preference number: 3 (lower is better)
Translates to: LQWWDSASLCHA*MAGCQAKMLGS
Trigger: GGACCCCAGCATCTTAGCTTGACACCCAGCCATGCAAGCATGACAAAGGCTAGCAGAGTCCCACCATTGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212176.2
3UTR-3UTR CAA 90 bp CAATGTCCATTGACTCTATTCTGTCAGGGAGTGAAGAGTTGGGTGGTAGAAAGATGTATGTTTTCATCTTaGGAACAGGATCTGGGAATT +
Preference number: 3 (lower is better)
Translates to: QCPLTLFCQGVKSWVVERCMFSS*EQDLGI
Trigger: AATTCCCAGATCCTGTTCCAAAGATGAAAACATACA...TCTTTCTACCACCCAACTCTTCACTCCCTGACAGAATAGAGTCAATGGACATTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212176.2
3UTR GCA 72 bp AGGTCTCCTGGGAATACTTCTTACATAGACCATCTATaGCCAGAAAGAATGTCTGGATATTGGAGTTTGTAT +
Preference number: 3 (lower is better)
Translates to: RSPGNTSYIDHL*PERMSGYWSLY
Trigger: ATACAAACTCCAATATCCAGACATTCTTTCTGGGCATAGATGGTCTATGTAAGAAGTATTCCCAGGAGACCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212176.2
3UTR TCA 72 bp TGGAACAGGATCTGGGAATTGCCACATTGTCTGTTATaGCTTTCTATATTGTCTGAGTTGTTGGATAACTCT +
Preference number: 3 (lower is better)
Translates to: WNRIWELPHCLL*LSILSELLDNS
Trigger: AGAGTTATCCAACAACTCAGACAATATAGAAAGTCATAACAGACAATGTGGCAATTCCCAGATCCTGTTCCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212176.2
3UTR CCA 72 bp AATGTCTGGATATTGGAGTTTGTATGTTTTCATCTTTaGAACAGGATCTGGGAATTGCCACATTGTCTGTTA +
Preference number: 3 (lower is better)
Translates to: NVWILEFVCFHL*NRIWELPHCLL
Trigger: TAACAGACAATGTGGCAATTCCCAGATCCTGTTCCAAAGATGAAAACATACAAACTCCAATATCCAGACATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212176.2
3UTR GCA 72 bp TTGTATGTTTTCATCTTTGGAACAGGATCTGGGAATTaGCACATTGTCTGTTATGACTTTCTATATTGTCTG +
Preference number: 3 (lower is better)
Translates to: LYVFIFGTGSGN*HIVCYDFLYCL
Trigger: CAGACAATATAGAAAGTCATAACAGACAATGTGGCAATTCCCAGATCCTGTTCCAAAGATGAAAACATACAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212176.2
CDS-3UTR TCA 90 bp GCATGCCAGGGGCTGGCTACAGAGCGTAGATTTGTAGGTGTGGAAGGCAAGAATCCCATGCGTCCATCCTaGGGTGGACTAATCACAGAG +
Preference number: 4 (lower is better)
Translates to: ACQGLATERRFVGVEGKNPMRPS*GGLITE
Trigger: CTCTGTGATTAGTCCACCTCAGGATGGACGCATGGG...ATTCTTGCCTTCCACACCTACAAATCTACGCTCTGTAGCCAGCCCCTGGCATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000196652.5
CDS-3UTR GCA 90 bp CTATTCTGTCAGGGAGTGAAGAGTTGGGTGGTAGAAAGAGATATCCATTTGGCTGAGTGGCAGTACACGTaGCCGCAGCTGGTCAGGCTG +
Preference number: 4 (lower is better)
Translates to: LFCQGVKSWVVERDIHLAEWQYT*PQLVRL
Trigger: CAGCCTGACCAGCTGCGGGCACGTGTACTGCCACTC...AGCCAAATGGATATCTCTTTCTACCACCCAACTCTTCACTCCCTGACAGAATAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212176.2
CDS-3UTR CCA 90 bp GCATGCCAGGGGCTGGCTACAGAGCGTAGATTTGTAGGTGTGGAAGGCAAGAATCTCAGGCTTTCTTGCTaGAGGAGTCAGGTCAATGTC +
Preference number: 4 (lower is better)
Translates to: ACQGLATERRFVGVEGKNLRLSC*RSQVNV
Trigger: GACATTGACCTGACTCCTCCAGCAAGAAAGCCTGAG...ATTCTTGCCTTCCACACCTACAAATCTACGCTCTGTAGCCAGCCCCTGGCATGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000196652.5
CDS-3UTR CCA 90 bp ACCGTGATATTTACCGATGAACGCATGCATGCCAGGGGCTGGCTACAGAGCGTATTCCTGTGCGGCGACTaGAAACAGCGATTACAGAAC +
Preference number: 4 (lower is better)
Translates to: TVIFTDERMHARGWLQSVFLCGD*KQRLQN
Trigger: GTTCTGTAATCGCTGTTTCCAGTCGCCGCACAGGAA...TACGCTCTGTAGCCAGCCCCTGGCATGCATGCGTTCATCGGTAAATATCACGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212176.2
CDS-3UTR TCA 90 bp TTGAAGGGCCTGCTGACATCTCAGGCTTTCTTGCTGGAGGAGTCAGGTCAATGTCATTCTTTGTACCTTTaGGGAGGCAGGAGTGGCAGT +
Preference number: 4 (lower is better)
Translates to: LKGLLTSQAFLLEESGQCHSLYL*GGRSGS
Trigger: ACTGCCACTCCTGCCTCCTCAAAGGTACAAAGAATG...ACATTGACCTGACTCCTCCAGCAAGAAAGCCTGAGATGTCAGCAGGCCCTTCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212176.2
CDS-3UTR CCA 90 bp ATGTCCATTGACTCTATTCTGTCAGGGAGTGAAGAGTTGGGTGGTAGAAAGAGATTGAGGAGGCAGGAGTaGCAGTACACGTGCCCGCAG +
Preference number: 4 (lower is better)
Translates to: MSIDSILSGSEELGGRKRLRRQE*QYTCPQ
Trigger: CTGCGGGCACGTGTACTGCCACTCCTGCCTCCTCAA...TCTCTTTCTACCACCCAACTCTTCACTCCCTGACAGAATAGAGTCAATGGACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212176.2
CDS-3UTR GCA 90 bp GTGATATTTACCGATGAACGCATGCATGCCAGGGGCTGGCTACAGAGCGTAGATCATCTCAGGCTTTCTTaGTGGAGGAGTCAGGTCAAT +
Preference number: 4 (lower is better)
Translates to: VIFTDERMHARGWLQSVDHLRLS*WRSQVN
Trigger: ATTGACCTGACTCCTCCAGCAAGAAAGCCTGAGATG...ATCTACGCTCTGTAGCCAGCCCCTGGCATGCATGCGTTCATCGGTAAATATCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000196652.5
CDS-3UTR CCA 90 bp GTGATATTTACCGATGAACGCATGCATGCCAGGGGCTGGCTACAGAGCGTAGATGCGTCCATCCTGAGGTaGACTAATCACAGAGATTCT +
Preference number: 4 (lower is better)
Translates to: VIFTDERMHARGWLQSVDASILR*TNHRDS
Trigger: AGAATCTCTGTGATTAGTCCACCTCAGGATGGACGC...ATCTACGCTCTGTAGCCAGCCCCTGGCATGCATGCGTTCATCGGTAAATATCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000196652.5
3UTR CAA 72 bp CAGGCTTTCTTGCTGGAGGAGTCAGGTCAATGTCCATaGACTCTATTCTGTCAGGGAGTGAAGAGTTGGGTG +
Preference number: 4 (lower is better)
Translates to: QAFLLEESGQCP*TLFCQGVKSWV
Trigger: CACCCAACTCTTCACTCCCTGACAGAATAGAGTCAATGGACATTGACCTGACTCCTCCAGCAAGAAAGCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212176.2
CDS-3UTR TCA 90 bp ATATTTACCGATGAACGCATGCATGCCAGGGGCTGGCTACAGAGCGTAGATTTGCAGGTCAATGTCCATTaGCTCTATTCTGTCAGGGAG +
Preference number: 4 (lower is better)
Translates to: IFTDERMHARGWLQSVDLQVNVH*LYSVRE
Trigger: CTCCCTGACAGAATAGAGTCAATGGACATTGACCTG...CAAATCTACGCTCTGTAGCCAGCCCCTGGCATGCATGCGTTCATCGGTAAATAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000196652.5
3UTR CAA 72 bp AGATTCTTGAAGGGCCTGCTGACATCTCAGGCTTTCTaGCTGGAGGAGTCAGGTCAATGTCCATTGACTCTA +
Preference number: 4 (lower is better)
Translates to: RFLKGLLTSQAF*LEESGQCPLTL
Trigger: TAGAGTCAATGGACATTGACCTGACTCCTCCAGCAAGAAAGCCTGAGATGTCAGCAGGCCCTTCAAGAATCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212176.2
CDS-3UTR CCA 90 bp ATATTTACCGATGAACGCATGCATGCCAGGGGCTGGCTACAGAGCGTAGATTTGCAGGGAGTGAAGAGTTaGGTGGTAGAAAGAGATATC +
Preference number: 4 (lower is better)
Translates to: IFTDERMHARGWLQSVDLQGVKS*VVERDI
Trigger: GATATCTCTTTCTACCACCCAACTCTTCACTCCCTG...CAAATCTACGCTCTGTAGCCAGCCCCTGGCATGCATGCGTTCATCGGTAAATAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000196652.5
3UTR CAA 72 bp ATGTCCATTGACTCTATTCTGTCAGGGAGTGAAGAGTaGGGTGGTAGAAAGAGATATCCATTTGGCTTTGTT +
Preference number: 4 (lower is better)
Translates to: MSIDSILSGSEE*GGRKRYPFGFV
Trigger: AACAAAGCCAAATGGATATCTCTTTCTACCACCCAACTCTTCACTCCCTGACAGAATAGAGTCAATGGACAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212176.2
CDS GCA 90 bp CATTCATTCTTTGTACCTTTGAGGAGGCAGGAGTGGCAGTACACGTaGCCGCAGCTGGTCAGGCTGAAGGACGACTTCCTGTGCGGCGAC +
Preference number: 5 (lower is better)
Translates to: HSFFVPLRRQEWQYT*PQLVRLKDDFLCGD
Trigger: GTCGCCGCACAGGAAGTCGTCCTTCAGCCTGACCAGCTGCGGGCACGTGTACTGCCACTCCTGCCTCCTCAAAGGTACAAAGAATGAATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000212176.2
ENSMUST00000212212.2
CDS-3UTR CAA 90 bp ACCGTGATATTTACCGATGAACGCATGCATGCCAGGGGCTGGCTACAGAGCGTATCAGGGAGTGAAGAGTaGGGTGGTAGAAAGAGATAT +
Preference number: 5 (lower is better)
Translates to: TVIFTDERMHARGWLQSVSGSEE*GGRKRY
Trigger: ATATCTCTTTCTACCACCCAACTCTTCACTCCCTGA...TACGCTCTGTAGCCAGCCCCTGGCATGCATGCGTTCATCGGTAAATATCACGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000196652.5
CDS-3UTR CAA 90 bp CAATGTCCATTGACTCTATTCTGTCAGGGAGTGAAGAGTTGGGTGGTAGAAAGATCATTCTTTGTACCTTaGAGGAGGCAGGAGTGGCAG +
Preference number: 5 (lower is better)
Translates to: QCPLTLFCQGVKSWVVERSFFVP*RRQEWQ
Trigger: CTGCCACTCCTGCCTCCTCAAAGGTACAAAGAATGA...TCTTTCTACCACCCAACTCTTCACTCCCTGACAGAATAGAGTCAATGGACATTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212176.2
CDS-3UTR CAA 90 bp GTCTGGATATTGGAGTTTGTATGTTTTCATCTTTGGAACAGGATCTGGGAATTGTGTCTGACAAGGAGCTaGACAGATTACGCATTCATT +
Preference number: 5 (lower is better)
Translates to: VWILEFVCFHLWNRIWELCLTRS*TDYAFI
Trigger: AATGAATGCGTAATCTGTCAAGCTCCTTGTCAGACA...CAATTCCCAGATCCTGTTCCAAAGATGAAAACATACAAACTCCAATATCCAGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212176.2
CDS CCA 90 bp ACTTCTTACATAGACCATCTATGCCCAGAAAGAATGTCTGGATATTaGAGTTTGTATGTTTTGAGAGTAGAACTGTCTGACAAGGAGCTT +
Preference number: 5 (lower is better)
Translates to: TSYIDHLCPERMSGY*SLYVLRVELSDKEL
Trigger: AAGCTCCTTGTCAGACAGTTCTACTCTCAAAACATACAAACTCCAATATCCAGACATTCTTTCTGGGCATAGATGGTCTATGTAAGAAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212212.2
CDS TCA 72 bp AGGAGTGGCAGTACACGTGCCCGCAGCTGGTCAGGCTaGAGGACGACTTCCTGTGCGGCGACTGGAAACAGC +
Preference number: 6 (lower is better)
Translates to: RSGSTRARSWSG*RTTSCAATGNS
Trigger: GCTGTTTCCAGTCGCCGCACAGGAAGTCGTCCTTCAGCCTGACCAGCTGCGGGCACGTGTACTGCCACTCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000212176.2
ENSMUST00000212212.2
CDS GCA 72 bp TGCCCGCAGCTGGTCAGGCTGAAGGACGACTTCCTGTaGGGCGACTGGAAACAGCGATTACAGAACACCCAG +
Preference number: 6 (lower is better)
Translates to: CPQLVRLKDDFL*GDWKQRLQNTQ
Trigger: CTGGGTGTTCTGTAATCGCTGTTTCCAGTCGCCGCACAGGAAGTCGTCCTTCAGCCTGACCAGCTGCGGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000212176.2
ENSMUST00000212212.2
CDS GCA 72 bp TTTGTACCTTTGAGGAGGCAGGAGTGGCAGTACACGTaGCCGCAGCTGGTCAGGCTGAAGGACGACTTCCTG +
Preference number: 6 (lower is better)
Translates to: FVPLRRQEWQYT*PQLVRLKDDFL
Trigger: CAGGAAGTCGTCCTTCAGCCTGACCAGCTGCGGGCACGTGTACTGCCACTCCTGCCTCCTCAAAGGTACAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000212176.2
ENSMUST00000212212.2
CDS GCA 72 bp CTAGGGGATGCTGATCCTGCTAGCCTTTGTCATGCTTaGATGGCTGGGTGTCAAGCTAAGATGCTGGGGTCC +
Preference number: 6 (lower is better)
Translates to: LGDADPASLCHA*MAGCQAKMLGS
Trigger: GGACCCCAGCATCTTAGCTTGACACCCAGCCATGCAAGCATGACAAAGGCTAGCAGGATCAGCATCCCCTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000196652.5
CDS CCA 72 bp ATAGACCATCTATGCCCAGAAAGAATGTCTGGATATTaGAGTTTGTATGTTTTGAGAGTAGAACTGTCTGAC +
Preference number: 6 (lower is better)
Translates to: IDHLCPERMSGY*SLYVLRVELSD
Trigger: GTCAGACAGTTCTACTCTCAAAACATACAAACTCCAATATCCAGACATTCTTTCTGGGCATAGATGGTCTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212212.2