Pregenerated sensors for RNF208 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044628Ensembl transcript IDs: ENSMUST00000060818.2, ENSMUST00000114355.2
Found 82 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTGGGCAAGAAAGGGTCAGCGGGCAACAGGACAAAGCCAGTTCCCTaGAGAAGCGGCGAGCAAGGACCTGCAGGCAGTAGTGGGCAGGTG | + |
|
Preference number: 1 (lower is better) Translates to: VGKKGSAGNRTKPVP*RSGEQGPAGSSGQV Trigger: CACCTGCCCACTACTGCCTGCAGGTCCTTGCTCGCCGCTTCTTCAGGGAACTGGCTTTGTCCTGTTGCCCGCTGACCCTTTCTTGCCCAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| 3UTR TCA 72 bp | AAAGGGTCAGCGGGCAACAGGACAAAGCCAGTTCCCTaGAGAAGCGGCGAGCAAGGACCTGCAGGCAGTAGT | + |
|
Preference number: 3 (lower is better) Translates to: KGSAGNRTKPVP*RSGEQGPAGSS Trigger: ACTACTGCCTGCAGGTCCTTGCTCGCCGCTTCTTCAGGGAACTGGCTTTGTCCTGTTGCCCGCTGACCCTTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR GCA 90 bp | CGGGCAACAGGACAAAGCCAGTTCCCTGAAGAAGCGGCGAGCAAGGACCTGCAGGGCCCGGCCATCCACTaGCCACCTCAGGCCCAGGGT | + |
|
Preference number: 4 (lower is better) Translates to: RATGQSQFPEEAASKDLQGPAIH*PPQAQG Trigger: ACCCTGGGCCTGAGGTGGGCAGTGGATGGCCGGGCC...CTGCAGGTCCTTGCTCGCCGCTTCTTCAGGGAACTGGCTTTGTCCTGTTGCCCG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR CCA 90 bp | GAAAGGGTCAGCGGGCAACAGGACAAAGCCAGTTCCCTGAAGAAGCGGCGAGCAGAGGGAAGCAGGGGGTaGCCGCCGGGAGCTCAGGGA | + |
|
Preference number: 4 (lower is better) Translates to: ERVSGQQDKASSLKKRRAEGSRG*PPGAQG Trigger: TCCCTGAGCTCCCGGCGGCCACCCCCTGCTTCCCTC...TGCTCGCCGCTTCTTCAGGGAACTGGCTTTGTCCTGTTGCCCGCTGACCCTTTC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR CCA 90 bp | CGGGCAACAGGACAAAGCCAGTTCCCTGAAGAAGCGGCGAGCAAGGACCTGCAGAGGGCCAAGCACGCTTaGGTGCCAGAGTGGGAGTGG | + |
|
Preference number: 4 (lower is better) Translates to: RATGQSQFPEEAASKDLQRAKHA*VPEWEW Trigger: CCACTCCCACTCTGGCACCCAAGCGTGCTTGGCCCT...CTGCAGGTCCTTGCTCGCCGCTTCTTCAGGGAACTGGCTTTGTCCTGTTGCCCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR TCA 90 bp | GCAAAGTTGGCTGCAGCGACAATGCCACGCAGGGTAGGGCCAGAAGCCACAGTGCACTGGCCCAGACGATaGAGGTGCAGAGGCTGTTGG | + |
|
Preference number: 4 (lower is better) Translates to: AKLAAATMPRRVGPEATVHWPRR*RCRGCW Trigger: CCAACAGCCTCTGCACCTTCATCGTCTGGGCCAGTG...CACTGTGGCTTCTGGCCCTACCCTGCGTGGCATTGTCGCTGCAGCCAACTTTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR GCA 90 bp | AGAGTTTTAATGGCAAAGTTGGCTGCAGCGACAATGCCACGCAGGGTAGGGCCAGGCCCGGCCATCCACTaGCCACCTCAGGCCCAGGGT | + |
|
Preference number: 4 (lower is better) Translates to: RVLMAKLAAATMPRRVGPGPAIH*PPQAQG Trigger: ACCCTGGGCCTGAGGTGGGCAGTGGATGGCCGGGCC...TGGCCCTACCCTGCGTGGCATTGTCGCTGCAGCCAACTTTGCCATTAAAACTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR GCA 90 bp | GTAGGGCCAGAAGCCACAGTGGGCAAGAAAGGGTCAGCGGGCAACAGGACAAAGCCAAGCACGCTTGGGTaGCAGAGTGGGAGTGGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: VGPEATVGKKGSAGNRTKPSTLG*QSGSGP Trigger: AGGCCCACTCCCACTCTGGCACCCAAGCGTGCTTGG...CTTTGTCCTGTTGCCCGCTGACCCTTTCTTGCCCACTGTGGCTTCTGGCCCTAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR GCA 90 bp | GCAAAGTTGGCTGCAGCGACAATGCCACGCAGGGTAGGGCCAGAAGCCACAGTGAGCCCAACTCAGAACTaGCTTTGCGGGGCCGCCTTG | + |
|
Preference number: 4 (lower is better) Translates to: AKLAAATMPRRVGPEATVSPTQN*LCGAAL Trigger: CAAGGCGGCCCCGCAAAGGCAGTTCTGAGTTGGGCT...CACTGTGGCTTCTGGCCCTACCCTGCGTGGCATTGTCGCTGCAGCCAACTTTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR CCA 90 bp | GCAAAGTTGGCTGCAGCGACAATGCCACGCAGGGTAGGGCCAGAAGCCACAGTGAATGACCTCATCCACTaGTGCCACCCGGGGGAAGCC | + |
|
Preference number: 4 (lower is better) Translates to: AKLAAATMPRRVGPEATVNDLIH*CHPGEA Trigger: GGCTTCCCCCGGGTGGCACCAGTGGATGAGGTCATT...CACTGTGGCTTCTGGCCCTACCCTGCGTGGCATTGTCGCTGCAGCCAACTTTGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR CCA 90 bp | GGCAAAGTTGGCTGCAGCGACAATGCCACGCAGGGTAGGGCCAGAAGCCACAGTAATGACCTCATCCACTaGTGCCACCCGGGGGAAGCC | + |
|
Preference number: 4 (lower is better) Translates to: GKVGCSDNATQGRARSHSNDLIH*CHPGEA Trigger: GGCTTCCCCCGGGTGGCACCAGTGGATGAGGTCATT...ACTGTGGCTTCTGGCCCTACCCTGCGTGGCATTGTCGCTGCAGCCAACTTTGCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR GCA 90 bp | GGGCAACAGGACAAAGCCAGTTCCCTGAAGAAGCGGCGAGCAAGGACCTGCAGGTTCCAGGGGCTCACCTaGTATCACTGGCCCAGACGA | + |
|
Preference number: 4 (lower is better) Translates to: GQQDKASSLKKRRARTCRFQGLT*YHWPRR Trigger: TCGTCTGGGCCAGTGATAGCAGGTGAGCCCCTGGAA...CCTGCAGGTCCTTGCTCGCCGCTTCTTCAGGGAACTGGCTTTGTCCTGTTGCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR GCA 90 bp | GCAAAGTTGGCTGCAGCGACAATGCCACGCAGGGTAGGGCCAGAAGCCACAGTGTTCCAGGGGCTCACCTaGTATCACTGGCCCAGACGA | + |
|
Preference number: 4 (lower is better) Translates to: AKLAAATMPRRVGPEATVFQGLT*YHWPRR Trigger: TCGTCTGGGCCAGTGATAGCAGGTGAGCCCCTGGAA...CACTGTGGCTTCTGGCCCTACCCTGCGTGGCATTGTCGCTGCAGCCAACTTTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR CCA 90 bp | AGCGGGCAACAGGACAAAGCCAGTTCCCTGAAGAAGCGGCGAGCAAGGACCTGCATGTATGCCCACAGGTaGGGCATTCCAGGGGCTCAC | + |
|
Preference number: 4 (lower is better) Translates to: SGQQDKASSLKKRRARTCMYAHR*GIPGAH Trigger: GTGAGCCCCTGGAATGCCCCACCTGTGGGCATACAT...GCAGGTCCTTGCTCGCCGCTTCTTCAGGGAACTGGCTTTGTCCTGTTGCCCGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR CCA 90 bp | GGGCAACAGGACAAAGCCAGTTCCCTGAAGAAGCGGCGAGCAAGGACCTGCAGGAGTCAGGGCTTCAGGTaGCAAGCGGCTCAGGATGGA | + |
|
Preference number: 4 (lower is better) Translates to: GQQDKASSLKKRRARTCRSQGFR*QAAQDG Trigger: TCCATCCTGAGCCGCTTGCCACCTGAAGCCCTGACT...CCTGCAGGTCCTTGCTCGCCGCTTCTTCAGGGAACTGGCTTTGTCCTGTTGCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR CCA 90 bp | AGCGGGCAACAGGACAAAGCCAGTTCCCTGAAGAAGCGGCGAGCAAGGACCTGCAGTGGGTTCCGCACATaGCAGGTGCATGCAGCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: SGQQDKASSLKKRRARTCSGFRT*QVHAAP Trigger: TGGAGCTGCATGCACCTGCCATGTGCGGAACCCACT...GCAGGTCCTTGCTCGCCGCTTCTTCAGGGAACTGGCTTTGTCCTGTTGCCCGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR TCA 90 bp | GGCAAAGTTGGCTGCAGCGACAATGCCACGCAGGGTAGGGCCAGAAGCCACAGTAATGATCTCTGTGTCTaGGGGCCAAGCACGCTTGGG | + |
|
Preference number: 4 (lower is better) Translates to: GKVGCSDNATQGRARSHSNDLCV*GPSTLG Trigger: CCCAAGCGTGCTTGGCCCTCAGACACAGAGATCATT...ACTGTGGCTTCTGGCCCTACCCTGCGTGGCATTGTCGCTGCAGCCAACTTTGCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR TCA 90 bp | CGGGCAACAGGACAAAGCCAGTTCCCTGAAGAAGCGGCGAGCAAGGACCTGCAGAATGATCTCTGTGTCTaGGGGCCAAGCACGCTTGGG | + |
|
Preference number: 4 (lower is better) Translates to: RATGQSQFPEEAASKDLQNDLCV*GPSTLG Trigger: CCCAAGCGTGCTTGGCCCTCAGACACAGAGATCATT...CTGCAGGTCCTTGCTCGCCGCTTCTTCAGGGAACTGGCTTTGTCCTGTTGCCCG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR TCA 90 bp | GCAAAGTTGGCTGCAGCGACAATGCCACGCAGGGTAGGGCCAGAAGCCACAGTGCCAGGCCATAGTCAGTaGAGAGCACAGTCTCACGGT | + |
|
Preference number: 4 (lower is better) Translates to: AKLAAATMPRRVGPEATVPGHSQ*RAQSHG Trigger: ACCGTGAGACTGTGCTCTTCACTGACTATGGCCTGG...CACTGTGGCTTCTGGCCCTACCCTGCGTGGCATTGTCGCTGCAGCCAACTTTGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR TCA 90 bp | ATGGCAAAGTTGGCTGCAGCGACAATGCCACGCAGGGTAGGGCCAGAAGCCACATCAGGATGGATGTGTTaGCAGCCAGTGCAGCCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: MAKLAAATMPRRVGPEATSGWMC*QPVQPG Trigger: GCCTGGCTGCACTGGCTGTCAACACATCCATCCTGA...TGTGGCTTCTGGCCCTACCCTGCGTGGCATTGTCGCTGCAGCCAACTTTGCCAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR GCA 90 bp | GTAGGGCCAGAAGCCACAGTGGGCAAGAAAGGGTCAGCGGGCAACAGGACAAAGTGCTCACACACGGAGTaGAGGCAAGACAGCACACGG | + |
|
Preference number: 4 (lower is better) Translates to: VGPEATVGKKGSAGNRTKCSHTE*RQDSTR Trigger: CCGTGTGCTGTCTTGCCTGCACTCCGTGTGTGAGCA...CTTTGTCCTGTTGCCCGCTGACCCTTTCTTGCCCACTGTGGCTTCTGGCCCTAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR GCA 90 bp | GAAAGGGTCAGCGGGCAACAGGACAAAGCCAGTTCCCTGAAGAAGCGGCGAGCATGCTCACACACGGAGTaGAGGCAAGACAGCACACGG | + |
|
Preference number: 4 (lower is better) Translates to: ERVSGQQDKASSLKKRRACSHTE*RQDSTR Trigger: CCGTGTGCTGTCTTGCCTGCACTCCGTGTGTGAGCA...TGCTCGCCGCTTCTTCAGGGAACTGGCTTTGTCCTGTTGCCCGCTGACCCTTTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR GCA 90 bp | GGTAGGGCCAGAAGCCACAGTGGGCAAGAAAGGGTCAGCGGGCAACAGGACAAACACATGGCAGGTGCATaGAGCTCCACAGTACTGCCG | + |
|
Preference number: 4 (lower is better) Translates to: GRARSHSGQERVSGQQDKHMAGA*SSTVLP Trigger: CGGCAGTACTGTGGAGCTGCATGCACCTGCCATGTG...TTTGTCCTGTTGCCCGCTGACCCTTTCTTGCCCACTGTGGCTTCTGGCCCTACC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR GCA 90 bp | GGGCAACAGGACAAAGCCAGTTCCCTGAAGAAGCGGCGAGCAAGGACCTGCAGGTCCGCACATGGCAGGTaGATGCAGCTCCACAGTACT | + |
|
Preference number: 4 (lower is better) Translates to: GQQDKASSLKKRRARTCRSAHGR*MQLHST Trigger: AGTACTGTGGAGCTGCATGCACCTGCCATGTGCGGA...CCTGCAGGTCCTTGCTCGCCGCTTCTTCAGGGAACTGGCTTTGTCCTGTTGCCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR GCA 90 bp | GCAAAGTTGGCTGCAGCGACAATGCCACGCAGGGTAGGGCCAGAAGCCACAGTGTCCGCACATGGCAGGTaGATGCAGCTCCACAGTACT | + |
|
Preference number: 4 (lower is better) Translates to: AKLAAATMPRRVGPEATVSAHGR*MQLHST Trigger: AGTACTGTGGAGCTGCATGCACCTGCCATGTGCGGA...CACTGTGGCTTCTGGCCCTACCCTGCGTGGCATTGTCGCTGCAGCCAACTTTGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR CCA 90 bp | TTGGCAAAGAGTTTTAATGGCAAAGTTGGCTGCAGCGACAATGCCACGCAGGGTGAGGGAAGCAGGGGGTaGCCGCCGGGAGCTCAGGGA | + |
|
Preference number: 4 (lower is better) Translates to: LAKSFNGKVGCSDNATQGEGSRG*PPGAQG Trigger: TCCCTGAGCTCCCGGCGGCCACCCCCTGCTTCCCTC...ACCCTGCGTGGCATTGTCGCTGCAGCCAACTTTGCCATTAAAACTCTTTGCCAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR CCA 90 bp | CGGGCAACAGGACAAAGCCAGTTCCCTGAAGAAGCGGCGAGCAAGGACCTGCAGGGCAAGGGTGGAGTGTaGGATGCTCCTTCCAAGGTA | + |
|
Preference number: 4 (lower is better) Translates to: RATGQSQFPEEAASKDLQGKGGV*DAPSKV Trigger: TACCTTGGAAGGAGCATCCCACACTCCACCCTTGCC...CTGCAGGTCCTTGCTCGCCGCTTCTTCAGGGAACTGGCTTTGTCCTGTTGCCCG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR CCA 90 bp | GCAAAGTTGGCTGCAGCGACAATGCCACGCAGGGTAGGGCCAGAAGCCACAGTGGGCAAGGGTGGAGTGTaGGATGCTCCTTCCAAGGTA | + |
|
Preference number: 4 (lower is better) Translates to: AKLAAATMPRRVGPEATVGKGGV*DAPSKV Trigger: TACCTTGGAAGGAGCATCCCACACTCCACCCTTGCC...CACTGTGGCTTCTGGCCCTACCCTGCGTGGCATTGTCGCTGCAGCCAACTTTGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR CCA 90 bp | GTAGGGCCAGAAGCCACAGTGGGCAAGAAAGGGTCAGCGGGCAACAGGACAAAGAGTGGGTTCCGCACATaGCAGGTGCATGCAGCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: VGPEATVGKKGSAGNRTKSGFRT*QVHAAP Trigger: TGGAGCTGCATGCACCTGCCATGTGCGGAACCCACT...CTTTGTCCTGTTGCCCGCTGACCCTTTCTTGCCCACTGTGGCTTCTGGCCCTAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR TCA 90 bp | GGTAGGGCCAGAAGCCACAGTGGGCAAGAAAGGGTCAGCGGGCAACAGGACAAACCAGGCCATAGTCAGTaGAGAGCACAGTCTCACGGT | + |
|
Preference number: 4 (lower is better) Translates to: GRARSHSGQERVSGQQDKPGHSQ*RAQSHG Trigger: ACCGTGAGACTGTGCTCTTCACTGACTATGGCCTGG...TTTGTCCTGTTGCCCGCTGACCCTTTCTTGCCCACTGTGGCTTCTGGCCCTACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR GCA 90 bp | GTAGGGCCAGAAGCCACAGTGGGCAAGAAAGGGTCAGCGGGCAACAGGACAAAGAGAATCTGCAGGCACTaGTCACACACGGAGTGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: VGPEATVGKKGSAGNRTKRICRH*SHTECR Trigger: CCTGCACTCCGTGTGTGAGCAGTGCCTGCAGATTCT...CTTTGTCCTGTTGCCCGCTGACCCTTTCTTGCCCACTGTGGCTTCTGGCCCTAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR CCA 90 bp | CGGGCAACAGGACAAAGCCAGTTCCCTGAAGAAGCGGCGAGCAAGGACCTGCAGAGGTGCAGAGGCTGTTaGGCCAGGTCGAATCACATA | + |
|
Preference number: 4 (lower is better) Translates to: RATGQSQFPEEAASKDLQRCRGC*ARSNHI Trigger: TATGTGATTCGACCTGGCCCAACAGCCTCTGCACCT...CTGCAGGTCCTTGCTCGCCGCTTCTTCAGGGAACTGGCTTTGTCCTGTTGCCCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR CCA 90 bp | GCAAAGTTGGCTGCAGCGACAATGCCACGCAGGGTAGGGCCAGAAGCCACAGTGAGGTGCAGAGGCTGTTaGGCCAGGTCGAATCACATA | + |
|
Preference number: 4 (lower is better) Translates to: AKLAAATMPRRVGPEATVRCRGC*ARSNHI Trigger: TATGTGATTCGACCTGGCCCAACAGCCTCTGCACCT...CACTGTGGCTTCTGGCCCTACCCTGCGTGGCATTGTCGCTGCAGCCAACTTTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR CCA 90 bp | GCAAAGTTGGCTGCAGCGACAATGCCACGCAGGGTAGGGCCAGAAGCCACAGTGATTTTGAGGATGACATaGGGGCCTTTCAGGCAGGAC | + |
|
Preference number: 4 (lower is better) Translates to: AKLAAATMPRRVGPEATVILRMT*GPFRQD Trigger: GTCCTGCCTGAAAGGCCCCCATGTCATCCTCAAAAT...CACTGTGGCTTCTGGCCCTACCCTGCGTGGCATTGTCGCTGCAGCCAACTTTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR CCA 90 bp | CAAAGAGTTTTAATGGCAAAGTTGGCTGCAGCGACAATGCCACGCAGGGTAGGGAGGGCCAAGCACGCTTaGGTGCCAGAGTGGGAGTGG | + |
|
Preference number: 4 (lower is better) Translates to: QRVLMAKLAAATMPRRVGRAKHA*VPEWEW Trigger: CCACTCCCACTCTGGCACCCAAGCGTGCTTGGCCCT...CCCTACCCTGCGTGGCATTGTCGCTGCAGCCAACTTTGCCATTAAAACTCTTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR CCA 90 bp | AGAGTTTTAATGGCAAAGTTGGCTGCAGCGACAATGCCACGCAGGGTAGGGCCACCGCCTTGGCAAGGGTaGAGTGTGGGATGCTCCTTC | + |
|
Preference number: 4 (lower is better) Translates to: RVLMAKLAAATMPRRVGPPPWQG*SVGCSF Trigger: GAAGGAGCATCCCACACTCCACCCTTGCCAAGGCGG...TGGCCCTACCCTGCGTGGCATTGTCGCTGCAGCCAACTTTGCCATTAAAACTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR GCA 90 bp | TTGGCAAAGAGTTTTAATGGCAAAGTTGGCTGCAGCGACAATGCCACGCAGGGTCCAAGCACGCTTGGGTaGCAGAGTGGGAGTGGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: LAKSFNGKVGCSDNATQGPSTLG*QSGSGP Trigger: AGGCCCACTCCCACTCTGGCACCCAAGCGTGCTTGG...ACCCTGCGTGGCATTGTCGCTGCAGCCAACTTTGCCATTAAAACTCTTTGCCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR CCA 90 bp | GAAAGGGTCAGCGGGCAACAGGACAAAGCCAGTTCCCTGAAGAAGCGGCGAGCAATTTTGAGGATGACATaGGGGCCTTTCAGGCAGGAC | + |
|
Preference number: 4 (lower is better) Translates to: ERVSGQQDKASSLKKRRAILRMT*GPFRQD Trigger: GTCCTGCCTGAAAGGCCCCCATGTCATCCTCAAAAT...TGCTCGCCGCTTCTTCAGGGAACTGGCTTTGTCCTGTTGCCCGCTGACCCTTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR CCA 90 bp | ATGGCAAAGTTGGCTGCAGCGACAATGCCACGCAGGGTAGGGCCAGAAGCCACAGGGAACTTTTCAGGGTaGACAATCTTCATGGCCTCC | + |
|
Preference number: 4 (lower is better) Translates to: MAKLAAATMPRRVGPEATGNFSG*TIFMAS Trigger: GGAGGCCATGAAGATTGTCCACCCTGAAAAGTTCCC...TGTGGCTTCTGGCCCTACCCTGCGTGGCATTGTCGCTGCAGCCAACTTTGCCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR CCA 90 bp | CAAAGAGTTTTAATGGCAAAGTTGGCTGCAGCGACAATGCCACGCAGGGTAGGGCCGCCTTGGCAAGGGTaGAGTGTGGGATGCTCCTTC | + |
|
Preference number: 4 (lower is better) Translates to: QRVLMAKLAAATMPRRVGPPWQG*SVGCSF Trigger: GAAGGAGCATCCCACACTCCACCCTTGCCAAGGCGG...CCCTACCCTGCGTGGCATTGTCGCTGCAGCCAACTTTGCCATTAAAACTCTTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR CCA 90 bp | AGAGTTTTAATGGCAAAGTTGGCTGCAGCGACAATGCCACGCAGGGTAGGGCCAAGCACAGTCTCACGGTaGCAGGTGGGACAGGAGATG | + |
|
Preference number: 4 (lower is better) Translates to: RVLMAKLAAATMPRRVGPSTVSR*QVGQEM Trigger: CATCTCCTGTCCCACCTGCCACCGTGAGACTGTGCT...TGGCCCTACCCTGCGTGGCATTGTCGCTGCAGCCAACTTTGCCATTAAAACTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR CCA 90 bp | AGAGTTTTAATGGCAAAGTTGGCTGCAGCGACAATGCCACGCAGGGTAGGGCCAAGTCAGGGCTTCAGGTaGCAAGCGGCTCAGGATGGA | + |
|
Preference number: 4 (lower is better) Translates to: RVLMAKLAAATMPRRVGPSQGFR*QAAQDG Trigger: TCCATCCTGAGCCGCTTGCCACCTGAAGCCCTGACT...TGGCCCTACCCTGCGTGGCATTGTCGCTGCAGCCAACTTTGCCATTAAAACTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR CCA 90 bp | CAAAGAGTTTTAATGGCAAAGTTGGCTGCAGCGACAATGCCACGCAGGGTAGGGATGTATGCCCACAGGTaGGGCATTCCAGGGGCTCAC | + |
|
Preference number: 4 (lower is better) Translates to: QRVLMAKLAAATMPRRVGMYAHR*GIPGAH Trigger: GTGAGCCCCTGGAATGCCCCACCTGTGGGCATACAT...CCCTACCCTGCGTGGCATTGTCGCTGCAGCCAACTTTGCCATTAAAACTCTTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR TCA 90 bp | GGGCAACAGGACAAAGCCAGTTCCCTGAAGAAGCGGCGAGCAAGGACCTGCAGGGGTCGAATCACATACTaGTTTACAATGACCTCATCC | + |
|
Preference number: 4 (lower is better) Translates to: GQQDKASSLKKRRARTCRGRITY*FTMTSS Trigger: GGATGAGGTCATTGTAAATCAGTATGTGATTCGACC...CCTGCAGGTCCTTGCTCGCCGCTTCTTCAGGGAACTGGCTTTGTCCTGTTGCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR TCA 90 bp | GCAAAGTTGGCTGCAGCGACAATGCCACGCAGGGTAGGGCCAGAAGCCACAGTGGGTCGAATCACATACTaGTTTACAATGACCTCATCC | + |
|
Preference number: 4 (lower is better) Translates to: AKLAAATMPRRVGPEATVGRITY*FTMTSS Trigger: GGATGAGGTCATTGTAAATCAGTATGTGATTCGACC...CACTGTGGCTTCTGGCCCTACCCTGCGTGGCATTGTCGCTGCAGCCAACTTTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR TCA 90 bp | TTGGCAAAGAGTTTTAATGGCAAAGTTGGCTGCAGCGACAATGCCACGCAGGGTTCAGGATGGATGTGTTaGCAGCCAGTGCAGCCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: LAKSFNGKVGCSDNATQGSGWMC*QPVQPG Trigger: GCCTGGCTGCACTGGCTGTCAACACATCCATCCTGA...ACCCTGCGTGGCATTGTCGCTGCAGCCAACTTTGCCATTAAAACTCTTTGCCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR GCA 90 bp | CAAAGAGTTTTAATGGCAAAGTTGGCTGCAGCGACAATGCCACGCAGGGTAGGGAGAATCTGCAGGCACTaGTCACACACGGAGTGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: QRVLMAKLAAATMPRRVGRICRH*SHTECR Trigger: CCTGCACTCCGTGTGTGAGCAGTGCCTGCAGATTCT...CCCTACCCTGCGTGGCATTGTCGCTGCAGCCAACTTTGCCATTAAAACTCTTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR GCA 90 bp | TTGGCAAAGAGTTTTAATGGCAAAGTTGGCTGCAGCGACAATGCCACGCAGGGTCACATGGCAGGTGCATaGAGCTCCACAGTACTGCCG | + |
|
Preference number: 4 (lower is better) Translates to: LAKSFNGKVGCSDNATQGHMAGA*SSTVLP Trigger: CGGCAGTACTGTGGAGCTGCATGCACCTGCCATGTG...ACCCTGCGTGGCATTGTCGCTGCAGCCAACTTTGCCATTAAAACTCTTTGCCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR CCA 90 bp | TTGGCAAAGAGTTTTAATGGCAAAGTTGGCTGCAGCGACAATGCCACGCAGGGTAGCACAGTCTCACGGTaGCAGGTGGGACAGGAGATG | + |
|
Preference number: 4 (lower is better) Translates to: LAKSFNGKVGCSDNATQGSTVSR*QVGQEM Trigger: CATCTCCTGTCCCACCTGCCACCGTGAGACTGTGCT...ACCCTGCGTGGCATTGTCGCTGCAGCCAACTTTGCCATTAAAACTCTTTGCCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR CAA 90 bp | GCAAAGTTGGCTGCAGCGACAATGCCACGCAGGGTAGGGCCAGAAGCCACAGTGCTCAGGATGGATGTGTaGACAGCCAGTGCAGCCAGG | + |
|
Preference number: 5 (lower is better) Translates to: AKLAAATMPRRVGPEATVLRMDV*TASAAR Trigger: CCTGGCTGCACTGGCTGTCAACACATCCATCCTGAG...CACTGTGGCTTCTGGCCCTACCCTGCGTGGCATTGTCGCTGCAGCCAACTTTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS GCA 90 bp | GGCTTCAGGTGGCAAGCGGCTCAGGATGGATGTGTTGACAGCCAGTaGAGCCAGGCCATAGTCAGTGAAGAGCACAGTCTCACGGTGGCA | + |
|
Preference number: 5 (lower is better) Translates to: GFRWQAAQDGCVDSQ*SQAIVSEEHSLTVA Trigger: TGCCACCGTGAGACTGTGCTCTTCACTGACTATGGCCTGGCTGCACTGGCTGTCAACACATCCATCCTGAGCCGCTTGCCACCTGAAGCC 59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR CAA 90 bp | ATGGCAAAGTTGGCTGCAGCGACAATGCCACGCAGGGTAGGGCCAGAAGCCACACTCAGGATGGATGTGTaGACAGCCAGTGCAGCCAGG | + |
|
Preference number: 5 (lower is better) Translates to: MAKLAAATMPRRVGPEATLRMDV*TASAAR Trigger: CCTGGCTGCACTGGCTGTCAACACATCCATCCTGAG...TGTGGCTTCTGGCCCTACCCTGCGTGGCATTGTCGCTGCAGCCAACTTTGCCAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS TCA 90 bp | GGTGGGGCATTCCAGGGGCTCACCTGCTATCACTGGCCCAGACGATaGAGGTGCAGAGGCTGTTGGGCCAGGTCGAATCACATACTGATT | + |
|
Preference number: 5 (lower is better) Translates to: GGAFQGLTCYHWPRR*RCRGCWARSNHILI Trigger: AATCAGTATGTGATTCGACCTGGCCCAACAGCCTCTGCACCTTCATCGTCTGGGCCAGTGATAGCAGGTGAGCCCCTGGAATGCCCCACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS GCA 90 bp | GCCAGGTCGAATCACATACTGATTTACAATGACCTCATCCACTGGTaGCACCCGGGGGAAGCCCAACTCAGAACTGCCTTTGCGGGGCCG | + |
|
Preference number: 5 (lower is better) Translates to: ARSNHILIYNDLIHW*HPGEAQLRTAFAGP Trigger: CGGCCCCGCAAAGGCAGTTCTGAGTTGGGCTTCCCCCGGGTGGCACCAGTGGATGAGGTCATTGTAAATCAGTATGTGATTCGACCTGGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR CAA 90 bp | ATGGCAAAGTTGGCTGCAGCGACAATGCCACGCAGGGTAGGGCCAGAAGCCACAAAGGTGCAGAGGCTGTaGGGCCAGGTCGAATCACAT | + |
|
Preference number: 5 (lower is better) Translates to: MAKLAAATMPRRVGPEATKVQRL*GQVESH Trigger: ATGTGATTCGACCTGGCCCAACAGCCTCTGCACCTT...TGTGGCTTCTGGCCCTACCCTGCGTGGCATTGTCGCTGCAGCCAACTTTGCCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR CAA 90 bp | GTAGGGCCAGAAGCCACAGTGGGCAAGAAAGGGTCAGCGGGCAACAGGACAAAGAAGGTGCAGAGGCTGTaGGGCCAGGTCGAATCACAT | + |
|
Preference number: 5 (lower is better) Translates to: VGPEATVGKKGSAGNRTKKVQRL*GQVESH Trigger: ATGTGATTCGACCTGGCCCAACAGCCTCTGCACCTT...CTTTGTCCTGTTGCCCGCTGACCCTTTCTTGCCCACTGTGGCTTCTGGCCCTAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS TCA 90 bp | GACGATGAAGGTGCAGAGGCTGTTGGGCCAGGTCGAATCACATACTaGTTTACAATGACCTCATCCACTGGTGCCACCCGGGGGAAGCCC | + |
|
Preference number: 5 (lower is better) Translates to: DDEGAEAVGPGRITY*FTMTSSTGATRGKP Trigger: GGGCTTCCCCCGGGTGGCACCAGTGGATGAGGTCATTGTAAATCAGTATGTGATTCGACCTGGCCCAACAGCCTCTGCACCTTCATCGTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS CCA 90 bp | TGGGCCAGGTCGAATCACATACTGATTTACAATGACCTCATCCACTaGTGCCACCCGGGGGAAGCCCAACTCAGAACTGCCTTTGCGGGG | + |
|
Preference number: 5 (lower is better) Translates to: WARSNHILIYNDLIH*CHPGEAQLRTAFAG Trigger: CCCCGCAAAGGCAGTTCTGAGTTGGGCTTCCCCCGGGTGGCACCAGTGGATGAGGTCATTGTAAATCAGTATGTGATTCGACCTGGCCCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR CAA 90 bp | GAAAGGGTCAGCGGGCAACAGGACAAAGCCAGTTCCCTGAAGAAGCGGCGAGCACCCCCACATGCCTGGTaGACAATGATCTCTGTGTCT | + |
|
Preference number: 5 (lower is better) Translates to: ERVSGQQDKASSLKKRRAPPHAW*TMISVS Trigger: AGACACAGAGATCATTGTCAACCAGGCATGTGGGGG...TGCTCGCCGCTTCTTCAGGGAACTGGCTTTGTCCTGTTGCCCGCTGACCCTTTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR CAA 90 bp | ATGGCAAAGTTGGCTGCAGCGACAATGCCACGCAGGGTAGGGCCAGAAGCCACACCCCCACATGCCTGGTaGACAATGATCTCTGTGTCT | + |
|
Preference number: 5 (lower is better) Translates to: MAKLAAATMPRRVGPEATPPHAW*TMISVS Trigger: AGACACAGAGATCATTGTCAACCAGGCATGTGGGGG...TGTGGCTTCTGGCCCTACCCTGCGTGGCATTGTCGCTGCAGCCAACTTTGCCAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR CAA 90 bp | CGGGCAACAGGACAAAGCCAGTTCCCTGAAGAAGCGGCGAGCAAGGACCTGCAGGGACAGGAGATGAACTaGTACTTAGGGCAAGACTCA | + |
|
Preference number: 5 (lower is better) Translates to: RATGQSQFPEEAASKDLQGQEMN*YLGQDS Trigger: TGAGTCTTGCCCTAAGTACAAGTTCATCTCCTGTCC...CTGCAGGTCCTTGCTCGCCGCTTCTTCAGGGAACTGGCTTTGTCCTGTTGCCCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR CAA 90 bp | GGTAGGGCCAGAAGCCACAGTGGGCAAGAAAGGGTCAGCGGGCAACAGGACAAAGGACAGGAGATGAACTaGTACTTAGGGCAAGACTCA | + |
|
Preference number: 5 (lower is better) Translates to: GRARSHSGQERVSGQQDKGQEMN*YLGQDS Trigger: TGAGTCTTGCCCTAAGTACAAGTTCATCTCCTGTCC...TTTGTCCTGTTGCCCGCTGACCCTTTCTTGCCCACTGTGGCTTCTGGCCCTACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS-3UTR CAA 90 bp | AGAGTTTTAATGGCAAAGTTGGCTGCAGCGACAATGCCACGCAGGGTAGGGCCATTCATGGCCTCCATTTaGAGGATGACATGGGGGCCT | + |
|
Preference number: 5 (lower is better) Translates to: RVLMAKLAAATMPRRVGPFMASI*RMTWGP Trigger: AGGCCCCCATGTCATCCTCAAAATGGAGGCCATGAA...TGGCCCTACCCTGCGTGGCATTGTCGCTGCAGCCAACTTTGCCATTAAAACTCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS GCA 72 bp | GTGCCACCCGGGGGAAGCCCAACTCAGAACTGCCTTTaGGGGGCCGCCTTGGCAAGGGTGGAGTGTGGGATG | + |
|
Preference number: 6 (lower is better) Translates to: VPPGGSPTQNCL*GAALARVECGM Trigger: CATCCCACACTCCACCCTTGCCAAGGCGGCCCCGCAAAGGCAGTTCTGAGTTGGGCTTCCCCCGGGTGGCAC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS GCA 72 bp | CCACTGGTGCCACCCGGGGGAAGCCCAACTCAGAACTaGCTTTGCGGGGCCGCCTTGGCAAGGGTGGAGTGT | + |
|
Preference number: 6 (lower is better) Translates to: PLVPPGGSPTQN*LCGAALARVEC Trigger: ACACTCCACCCTTGCCAAGGCGGCCCCGCAAAGGCAGTTCTGAGTTGGGCTTCCCCCGGGTGGCACCAGTGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS CAA 90 bp | CTGCTCACACACGGAGTGCAGGCAAGACAGCACACGGGGCCGCCGTaGAGTGACGTTGTATGTATGCCCACAGGTGGGGCATTCCAGGGG | + |
|
Preference number: 6 (lower is better) Translates to: LLTHGVQARQHTGPP*SDVVCMPTGGAFQG Trigger: CCCCTGGAATGCCCCACCTGTGGGCATACATACAACGTCACTCAACGGCGGCCCCGTGTGCTGTCTTGCCTGCACTCCGTGTGTGAGCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS CCA 72 bp | CCACTGTCCACCGGATGGGGCAGTCAGGGCTTCAGGTaGCAAGCGGCTCAGGATGGATGTGTTGACAGCCAG | + |
|
Preference number: 6 (lower is better) Translates to: PLSTGWGSQGFR*QAAQDGCVDSQ Trigger: CTGGCTGTCAACACATCCATCCTGAGCCGCTTGCCACCTGAAGCCCTGACTGCCCCATCCGGTGGACAGTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS CAA 72 bp | GGAAGCCCAACTCAGAACTGCCTTTGCGGGGCCGCCTaGGCAAGGGTGGAGTGTGGGATGCTCCTTCCAAGG | + |
|
Preference number: 6 (lower is better) Translates to: GSPTQNCLCGAA*ARVECGMLLPR Trigger: CCTTGGAAGGAGCATCCCACACTCCACCCTTGCCAAGGCGGCCCCGCAAAGGCAGTTCTGAGTTGGGCTTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS CAA 72 bp | CACGGAGTGCAGGCAAGACAGCACACGGGGCCGCCGTaGAGTGACGTTGTATGTATGCCCACAGGTGGGGCA | + |
|
Preference number: 6 (lower is better) Translates to: HGVQARQHTGPP*SDVVCMPTGGA Trigger: TGCCCCACCTGTGGGCATACATACAACGTCACTCAACGGCGGCCCCGTGTGCTGTCTTGCCTGCACTCCGTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS TCA 72 bp | ACGGAGTGCAGGCAAGACAGCACACGGGGCCGCCGTTaGGTGACGTTGTATGTATGCCCACAGGTGGGGCAT | + |
|
Preference number: 6 (lower is better) Translates to: TECRQDSTRGRR*VTLYVCPQVGH Trigger: ATGCCCCACCTGTGGGCATACATACAACGTCACTCAACGGCGGCCCCGTGTGCTGTCTTGCCTGCACTCCGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS CCA 72 bp | CTCAGAACTGCCTTTGCGGGGCCGCCTTGGCAAGGGTaGAGTGTGGGATGCTCCTTCCAAGGTAGGCATGTC | + |
|
Preference number: 6 (lower is better) Translates to: LRTAFAGPPWQG*SVGCSFQGRHV Trigger: GACATGCCTACCTTGGAAGGAGCATCCCACACTCCACCCTTGCCAAGGCGGCCCCGCAAAGGCAGTTCTGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS TCA 72 bp | TTCCAGGGGCTCACCTGCTATCACTGGCCCAGACGATaGAGGTGCAGAGGCTGTTGGGCCAGGTCGAATCAC | + |
|
Preference number: 6 (lower is better) Translates to: FQGLTCYHWPRR*RCRGCWARSNH Trigger: GTGATTCGACCTGGCCCAACAGCCTCTGCACCTTCATCGTCTGGGCCAGTGATAGCAGGTGAGCCCCTGGAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS TCA 72 bp | AGTGCAGGCAAGACAGCACACGGGGCCGCCGTTGAGTaGCGTTGTATGTATGCCCACAGGTGGGGCATTCCA | + |
|
Preference number: 6 (lower is better) Translates to: SAGKTAHGAAVE*RCMYAHRWGIP Trigger: TGGAATGCCCCACCTGTGGGCATACATACAACGTCACTCAACGGCGGCCCCGTGTGCTGTCTTGCCTGCACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS GCA 72 bp | TGGAACAGGCAGATAGTGGGTTCCGCACATGGCAGGTaGATGCAGCTCCACAGTACTGCCGGAAGGTCTGGT | + |
|
Preference number: 6 (lower is better) Translates to: WNRQIVGSAHGR*MQLHSTAGRSG Trigger: ACCAGACCTTCCGGCAGTACTGTGGAGCTGCATGCACCTGCCATGTGCGGAACCCACTATCTGCCTGTTCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS CCA 72 bp | TGGACAATCTTCATGGCCTCCATTTTGAGGATGACATaGGGGCCTTTCAGGCAGGACATGAGGAGGCCCGGC | + |
|
Preference number: 6 (lower is better) Translates to: WTIFMASILRMT*GPFRQDMRRPG Trigger: GCCGGGCCTCCTCATGTCCTGCCTGAAAGGCCCCCATGTCATCCTCAAAATGGAGGCCATGAAGATTGTCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS TCA 72 bp | CTGTTGGGCCAGGTCGAATCACATACTGATTTACAATaGCCTCATCCACTGGTGCCACCCGGGGGAAGCCCA | + |
|
Preference number: 6 (lower is better) Translates to: LLGQVESHTDLQ*PHPLVPPGGSP Trigger: TGGGCTTCCCCCGGGTGGCACCAGTGGATGAGGTCATTGTAAATCAGTATGTGATTCGACCTGGCCCAACAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS TCA 72 bp | GGTGCAGAGGCTGTTGGGCCAGGTCGAATCACATACTaGTTTACAATGACCTCATCCACTGGTGCCACCCGG | + |
|
Preference number: 6 (lower is better) Translates to: GAEAVGPGRITY*FTMTSSTGATR Trigger: CCGGGTGGCACCAGTGGATGAGGTCATTGTAAATCAGTATGTGATTCGACCTGGCCCAACAGCCTCTGCACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS CCA 72 bp | TACATGATGGAACAGGCAGATAGTGGGTTCCGCACATaGCAGGTGCATGCAGCTCCACAGTACTGCCGGAAG | + |
|
Preference number: 6 (lower is better) Translates to: YMMEQADSGFRT*QVHAAPQYCRK Trigger: CTTCCGGCAGTACTGTGGAGCTGCATGCACCTGCCATGTGCGGAACCCACTATCTGCCTGTTCCATCATGTA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS CAA 90 bp | AGCTCAGGGAACTTTTCAGGGTGGACAATCTTCATGGCCTCCATTTaGAGGATGACATGGGGGCCTTTCAGGCAGGACATGAGGAGGCCC | + |
|
Preference number: 6 (lower is better) Translates to: SSGNFSGWTIFMASI*RMTWGPFRQDMRRP Trigger: GGGCCTCCTCATGTCCTGCCTGAAAGGCCCCCATGTCATCCTCAAAATGGAGGCCATGAAGATTGTCCACCCTGAAAAGTTCCCTGAGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS CCA 72 bp | TCGAATCACATACTGATTTACAATGACCTCATCCACTaGTGCCACCCGGGGGAAGCCCAACTCAGAACTGCC | + |
|
Preference number: 6 (lower is better) Translates to: SNHILIYNDLIH*CHPGEAQLRTA Trigger: GGCAGTTCTGAGTTGGGCTTCCCCCGGGTGGCACCAGTGGATGAGGTCATTGTAAATCAGTATGTGATTCGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS GCA 72 bp | AATCACATACTGATTTACAATGACCTCATCCACTGGTaGCACCCGGGGGAAGCCCAACTCAGAACTGCCTTT | + |
|
Preference number: 6 (lower is better) Translates to: NHILIYNDLIHW*HPGEAQLRTAF Trigger: AAAGGCAGTTCTGAGTTGGGCTTCCCCCGGGTGGCACCAGTGGATGAGGTCATTGTAAATCAGTATGTGATT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||
| CDS CAA 72 bp | AACTTTTCAGGGTGGACAATCTTCATGGCCTCCATTTaGAGGATGACATGGGGGCCTTTCAGGCAGGACATG | + |
|
Preference number: 6 (lower is better) Translates to: NFSGWTIFMASI*RMTWGPFRQDM Trigger: CATGTCCTGCCTGAAAGGCCCCCATGTCATCCTCAAAATGGAGGCCATGAAGATTGTCCACCCTGAAAAGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000060818.2 ENSMUST00000114355.2 |
||