Pregenerated sensors for RNF2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026484Ensembl transcript IDs: ENSMUST00000076110.11, ENSMUST00000186415.7, ENSMUST00000187048.7, ENSMUST00000190070.7
Found 82 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AGGCAGAATCCCAGTACTTGGGCAGGAGCATTACTCCAAAGTCAAGGCCAGCCTAGGGAGTGGGAGCTCTaGATCACAGAGTCCTTTCCA | + |
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Preference number: 2 (lower is better) Translates to: RQNPSTWAGALLQSQGQPREWEL*ITESFP Trigger: TGGAAAGGACTCTGTGATTCAGAGCTCCCACTCCCT...AGGCTGGCCTTGACTTTGGAGTAATGCTCCTGCCCAAGTACTGGGATTCTGCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| 3UTR-3UTR TCA 90 bp | AGCTGTCCCATTCTATGTCAATGCAATGTTCACACTCCATTAACCTGTTTCTACTTAAGCACAGTAATTTaGGCCTTGGTCTTCATGAAG | + |
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Preference number: 2 (lower is better) Translates to: SCPILCQCNVHTPLTCFYLSTVI*ALVFMK Trigger: CTTCATGAAGACCAAGGCTCAAATTACTGTGCTTAA...GTAGAAACAGGTTAATGGAGTGTGAACATTGCATTGACATAGAATGGGACAGCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| 3UTR-3UTR TCA 90 bp | AGCTGTCCCATTCTATGTCAATGCAATGTTCACACTCCATTAACCTGTTTCTACTTCGACTTTTCCCCGTaGCCTGAAATTCTAAACTTA | + |
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Preference number: 2 (lower is better) Translates to: SCPILCQCNVHTPLTCFYFDFSP*PEILNL Trigger: TAAGTTTAGAATTTCAGGTCACGGGGAAAAGTCGAA...GTAGAAACAGGTTAATGGAGTGTGAACATTGCATTGACATAGAATGGGACAGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| 3UTR-3UTR TCA 90 bp | ATGACTGACACTTTAGTTACAATGGTACCGGAAGTCTCTTCCTTCTATCAAAACTTAAGCACAGTAATTTaGGCCTTGGTCTTCATGAAG | + |
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Preference number: 2 (lower is better) Translates to: MTDTLVTMVPEVSSFYQNLSTVI*ALVFMK Trigger: CTTCATGAAGACCAAGGCTCAAATTACTGTGCTTAA...GTTTTGATAGAAGGAAGAGACTTCCGGTACCATTGTAACTAAAGTGTCAGTCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| 3UTR CCA 72 bp | CCAACACTTTCTCAATACAAAACTAAGGCTTCTGAATaGCTGCCCAACCTGCTGACATCCTTCTACAGAGCT | + |
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Preference number: 3 (lower is better) Translates to: PTLSQYKTKASE*LPNLLTSFYRA Trigger: AGCTCTGTAGAAGGATGTCAGCAGGTTGGGCAGCCATTCAGAAGCCTTAGTTTTGTATTGAGAAAGTGTTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR CCA 90 bp | AGGCAGAATCCCAGTACTTGGGCAGGAGCATTACTCCAAAGTCAAGGCCAGCCTCTCGGGCCCGCTTCCTaGTTGCTGTGTGTGGATGCG | + |
|
Preference number: 4 (lower is better) Translates to: RQNPSTWAGALLQSQGQPLGPAS*LLCVDA Trigger: CGCATCCACACACAGCAACCAGGAAGCGGGCCCGAG...AGGCTGGCCTTGACTTTGGAGTAATGCTCCTGCCCAAGTACTGGGATTCTGCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR GCA 90 bp | AGGCAGAATCCCAGTACTTGGGCAGGAGCATTACTCCAAAGTCAAGGCCAGCCTGTTGCTGTGTGTGGATaGGTTACTACAGTGGGAGCT | + |
|
Preference number: 4 (lower is better) Translates to: RQNPSTWAGALLQSQGQPVAVCG*VTTVGA Trigger: AGCTCCCACTGTAGTAACGCATCCACACACAGCAAC...AGGCTGGCCTTGACTTTGGAGTAATGCTCCTGCCCAAGTACTGGGATTCTGCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR CCA 90 bp | CCAGGCAGAATCCCAGTACTTGGGCAGGAGCATTACTCCAAAGTCAAGGCCAGCGCTGTAATCTGTTCATaGCCTGTATCTTCAGCCCCT | + |
|
Preference number: 4 (lower is better) Translates to: PGRIPVLGQEHYSKVKASAVICS*PVSSAP Trigger: AGGGGCTGAAGATACAGGCCATGAACAGATTACAGC...GCTGGCCTTGACTTTGGAGTAATGCTCCTGCCCAAGTACTGGGATTCTGCCTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR GCA 90 bp | AGGCAGAATCCCAGTACTTGGGCAGGAGCATTACTCCAAAGTCAAGGCCAGCCTCAAGCCATCTGTTATTaGCTCCTGAGGTGTTCGTTG | + |
|
Preference number: 4 (lower is better) Translates to: RQNPSTWAGALLQSQGQPQAICY*LLRCSL Trigger: CAACGAACACCTCAGGAGGCAATAACAGATGGCTTG...AGGCTGGCCTTGACTTTGGAGTAATGCTCCTGCCCAAGTACTGGGATTCTGCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR GCA 90 bp | AGGCAGAATCCCAGTACTTGGGCAGGAGCATTACTCCAAAGTCAAGGCCAGCCTGTGCTCCTTGGTGGGTaGATAATAAAGTTCCATGGG | + |
|
Preference number: 4 (lower is better) Translates to: RQNPSTWAGALLQSQGQPVLLGG*IIKFHG Trigger: CCCATGGAACTTTATTATGCACCCACCAAGGAGCAC...AGGCTGGCCTTGACTTTGGAGTAATGCTCCTGCCCAAGTACTGGGATTCTGCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR CCA 90 bp | AGGCAGAATCCCAGTACTTGGGCAGGAGCATTACTCCAAAGTCAAGGCCAGCCTAGTCATCAGAGGTTTTaGTCCGTTTGTTACTCGGGC | + |
|
Preference number: 4 (lower is better) Translates to: RQNPSTWAGALLQSQGQPSHQRF*SVCYSG Trigger: GCCCGAGTAACAAACGGACCAAAACCTCTGATGACT...AGGCTGGCCTTGACTTTGGAGTAATGCTCCTGCCCAAGTACTGGGATTCTGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR CCA 90 bp | AGGCAGAATCCCAGTACTTGGGCAGGAGCATTACTCCAAAGTCAAGGCCAGCCTGATGCGTTACTACAGTaGGAGCTGTCACCATTATCT | + |
|
Preference number: 4 (lower is better) Translates to: RQNPSTWAGALLQSQGQPDALLQ*ELSPLS Trigger: AGATAATGGTGACAGCTCCCACTGTAGTAACGCATC...AGGCTGGCCTTGACTTTGGAGTAATGCTCCTGCCCAAGTACTGGGATTCTGCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR CCA 90 bp | AGCTGTCCCATTCTATGTCAATGCAATGTTCACACTCCATTAACCTGTTTCTACCTCGGGCCCGCTTCCTaGTTGCTGTGTGTGGATGCG | + |
|
Preference number: 4 (lower is better) Translates to: SCPILCQCNVHTPLTCFYLGPAS*LLCVDA Trigger: CGCATCCACACACAGCAACCAGGAAGCGGGCCCGAG...GTAGAAACAGGTTAATGGAGTGTGAACATTGCATTGACATAGAATGGGACAGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR CCA 90 bp | TTCAGAAAATTGGCTGTTTCTGACTTGGCTGGTGTGAGAGCGTTGCTTTTTAAGCACCAGGGATTGACCTaGAGGCTCTGGCTCTCAGGC | + |
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Preference number: 4 (lower is better) Translates to: FRKLAVSDLAGVRALLFKHQGLT*RLWLSG Trigger: GCCTGAGAGCCAGAGCCTCCAGGTCAATCCCTGGTG...CTTAAAAAGCAACGCTCTCACACCAGCCAAGTCAGAAACAGCCAATTTTCTGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000190070.7 |
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| CDS-3UTR TCA 90 bp | CCAGGCAGAATCCCAGTACTTGGGCAGGAGCATTACTCCAAAGTCAAGGCCAGCGATTGTTGTGTTTGTTaGTCCTTGCTAAGACCCTTT | + |
|
Preference number: 4 (lower is better) Translates to: PGRIPVLGQEHYSKVKASDCCVC*SLLRPF Trigger: AAAGGGTCTTAGCAAGGATCAACAAACACAACAATC...GCTGGCCTTGACTTTGGAGTAATGCTCCTGCCCAAGTACTGGGATTCTGCCTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR TCA 90 bp | TCATTCAGAAAATTGGCTGTTTCTGACTTGGCTGGTGTGAGAGCGTTGCTTTTTTCTGACACCAGGGATTaGCCTGGAGGCTCTGGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: SFRKLAVSDLAGVRALLFSDTRD*PGGSGS Trigger: AGAGCCAGAGCCTCCAGGTCAATCCCTGGTGTCAGA...AAAAAGCAACGCTCTCACACCAGCCAAGTCAGAAACAGCCAATTTTCTGAATGA 49% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000190070.7 |
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| CDS-3UTR GCA 90 bp | AGGCAGAATCCCAGTACTTGGGCAGGAGCATTACTCCAAAGTCAAGGCCAGCCTCTATCTGCTGCTTTTTaGCTCGCTGTAATCTGTTCA | + |
|
Preference number: 4 (lower is better) Translates to: RQNPSTWAGALLQSQGQPLSAAF*LAVICS Trigger: TGAACAGATTACAGCGAGGCAAAAAGCAGCAGATAG...AGGCTGGCCTTGACTTTGGAGTAATGCTCCTGCCCAAGTACTGGGATTCTGCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR CCA 90 bp | TTGGCTGTTTCTGACTTGGCTGGTGTGAGAGCGTTGCTTTTTAAGTTTTTATTACTCGGGCCCGCTTCCTaGTTGCTGTGTGTGGATGCG | + |
|
Preference number: 4 (lower is better) Translates to: LAVSDLAGVRALLFKFLLLGPAS*LLCVDA Trigger: CGCATCCACACACAGCAACCAGGAAGCGGGCCCGAG...TAATAAAAACTTAAAAAGCAACGCTCTCACACCAGCCAAGTCAGAAACAGCCAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000190070.7 |
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| CDS-3UTR CCA 90 bp | AGAAAGAAAACTGAACATATCCCAGGTCTGTCCATGAAAGTAACAATGGTACATCTCGGGCCCGCTTCCTaGTTGCTGTGTGTGGATGCG | + |
|
Preference number: 4 (lower is better) Translates to: RKKTEHIPGLSMKVTMVHLGPAS*LLCVDA Trigger: CGCATCCACACACAGCAACCAGGAAGCGGGCCCGAG...ATGTACCATTGTTACTTTCATGGACAGACCTGGGATATGTTCAGTTTTCTTTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000076110.11 ENSMUST00000186415.7 ENSMUST00000187048.7 |
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| CDS-3UTR TCA 90 bp | GCTGTTTCTGACTTGGCTGGTGTGAGAGCGTTGCTTTTTAAGTTTTTATTATTTGTGGTGGTTTCTCGGTaGACTGGCCACTGGCTGTGG | + |
|
Preference number: 4 (lower is better) Translates to: AVSDLAGVRALLFKFLLFVVVSR*TGHWLW Trigger: CCACAGCCAGTGGCCAGTTCACCGAGAAACCACCAC...AAATAATAAAAACTTAAAAAGCAACGCTCTCACACCAGCCAAGTCAGAAACAGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000190070.7 |
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| CDS-3UTR TCA 90 bp | TGTCCCATTCTATGTCAATGCAATGTTCACACTCCATTAACCTGTTTCTACAGACCTCGATGCTGTGGCTaGGAGCCTGCTGATTGTTGT | + |
|
Preference number: 4 (lower is better) Translates to: CPILCQCNVHTPLTCFYRPRCCG*EPADCC Trigger: ACAACAATCAGCAGGCTCTCAGCCACAGCATCGAGG...TCTGTAGAAACAGGTTAATGGAGTGTGAACATTGCATTGACATAGAATGGGACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR TCA 90 bp | AGTCTTGTGGTTCCCAGACTACCAACACTTTCTCAATACAAAACTAAGGCTTCTAGCCATTTAAAACGGTaGACTGGCCACTGGCTGTGG | + |
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Preference number: 4 (lower is better) Translates to: SLVVPRLPTLSQYKTKASSHLKR*TGHWLW Trigger: CCACAGCCAGTGGCCAGTTCACCGTTTTAAATGGCT...AGAAGCCTTAGTTTTGTATTGAGAAAGTGTTGGTAGTCTGGGAACCACAAGACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR GCA 90 bp | TCATTCAGAAAATTGGCTGTTTCTGACTTGGCTGGTGTGAGAGCGTTGCTTTTTGTTGCTGTGTGTGGATaGGTTACTACAGTGGGAGCT | + |
|
Preference number: 4 (lower is better) Translates to: SFRKLAVSDLAGVRALLFVAVCG*VTTVGA Trigger: AGCTCCCACTGTAGTAACGCATCCACACACAGCAAC...AAAAAGCAACGCTCTCACACCAGCCAAGTCAGAAACAGCCAATTTTCTGAATGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000190070.7 |
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| CDS-3UTR CCA 90 bp | GCTGTTTCTGACTTGGCTGGTGTGAGAGCGTTGCTTTTTAAGTTTTTATTATTTTTGACCTGGAGGCTCTaGCTCTCAGGCAGCAGGGAT | + |
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Preference number: 4 (lower is better) Translates to: AVSDLAGVRALLFKFLLFLTWRL*LSGSRD Trigger: ATCCCTGCTGCCTGAGAGCCAGAGCCTCCAGGTCAA...AAATAATAAAAACTTAAAAAGCAACGCTCTCACACCAGCCAAGTCAGAAACAGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000190070.7 |
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| CDS-3UTR TCA 90 bp | AGAAAGAAAACTGAACATATCCCAGGTCTGTCCATGAAAGTAACAATGGTACATCCTCGATGCTGTGGCTaGGAGCCTGCTGATTGTTGT | + |
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Preference number: 4 (lower is better) Translates to: RKKTEHIPGLSMKVTMVHPRCCG*EPADCC Trigger: ACAACAATCAGCAGGCTCTCAGCCACAGCATCGAGG...ATGTACCATTGTTACTTTCATGGACAGACCTGGGATATGTTCAGTTTTCTTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR TCA 90 bp | TGTCCCATTCTATGTCAATGCAATGTTCACACTCCATTAACCTGTTTCTACAGAAGCCATTTAAAACGGTaGACTGGCCACTGGCTGTGG | + |
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Preference number: 4 (lower is better) Translates to: CPILCQCNVHTPLTCFYRSHLKR*TGHWLW Trigger: CCACAGCCAGTGGCCAGTTCACCGTTTTAAATGGCT...TCTGTAGAAACAGGTTAATGGAGTGTGAACATTGCATTGACATAGAATGGGACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR GCA 90 bp | AGTCTTGTGGTTCCCAGACTACCAACACTTTCTCAATACAAAACTAAGGCTTCTGTTGCTGTGTGTGGATaGGTTACTACAGTGGGAGCT | + |
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Preference number: 4 (lower is better) Translates to: SLVVPRLPTLSQYKTKASVAVCG*VTTVGA Trigger: AGCTCCCACTGTAGTAACGCATCCACACACAGCAAC...AGAAGCCTTAGTTTTGTATTGAGAAAGTGTTGGTAGTCTGGGAACCACAAGACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR CCA 90 bp | GCTGTTTCTGACTTGGCTGGTGTGAGAGCGTTGCTTTTTAAGTTTTTATTATTTGGTTTCTCGGTGAACTaGCCACTGGCTGTGGCTATG | + |
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Preference number: 4 (lower is better) Translates to: AVSDLAGVRALLFKFLLFGFSVN*PLAVAM Trigger: CATAGCCACAGCCAGTGGCCAGTTCACCGAGAAACC...AAATAATAAAAACTTAAAAAGCAACGCTCTCACACCAGCCAAGTCAGAAACAGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000190070.7 |
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| CDS-3UTR TCA 90 bp | AGTCTTGTGGTTCCCAGACTACCAACACTTTCTCAATACAAAACTAAGGCTTCTTGGCTGAGAGCCTGCTaGTTGTTGTGTTTGTTGATC | + |
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Preference number: 4 (lower is better) Translates to: SLVVPRLPTLSQYKTKASWLRAC*LLCLLI Trigger: GATCAACAAACACAACAATCAGCAGGCTCTCAGCCA...AGAAGCCTTAGTTTTGTATTGAGAAAGTGTTGGTAGTCTGGGAACCACAAGACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR TCA 90 bp | AGAAAGAAAACTGAACATATCCCAGGTCTGTCCATGAAAGTAACAATGGTACATAGCCATTTAAAACGGTaGACTGGCCACTGGCTGTGG | + |
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Preference number: 4 (lower is better) Translates to: RKKTEHIPGLSMKVTMVHSHLKR*TGHWLW Trigger: CCACAGCCAGTGGCCAGTTCACCGTTTTAAATGGCT...ATGTACCATTGTTACTTTCATGGACAGACCTGGGATATGTTCAGTTTTCTTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000076110.11 ENSMUST00000186415.7 ENSMUST00000187048.7 |
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| CDS-3UTR CCA 90 bp | TTCAGAAAATTGGCTGTTTCTGACTTGGCTGGTGTGAGAGCGTTGCTTTTTAAGGATGCGTTACTACAGTaGGAGCTGTCACCATTATCT | + |
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Preference number: 4 (lower is better) Translates to: FRKLAVSDLAGVRALLFKDALLQ*ELSPLS Trigger: AGATAATGGTGACAGCTCCCACTGTAGTAACGCATC...CTTAAAAAGCAACGCTCTCACACCAGCCAAGTCAGAAACAGCCAATTTTCTGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000190070.7 |
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| CDS-3UTR TCA 90 bp | AGCTGTCCCATTCTATGTCAATGCAATGTTCACACTCCATTAACCTGTTTCTACTCTGTTATTGCCTCCTaGGGTGTTCGTTGTAACTCA | + |
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Preference number: 4 (lower is better) Translates to: SCPILCQCNVHTPLTCFYSVIAS*GVRCNS Trigger: TGAGTTACAACGAACACCTCAGGAGGCAATAACAGA...GTAGAAACAGGTTAATGGAGTGTGAACATTGCATTGACATAGAATGGGACAGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR TCA 90 bp | TGTCCCATTCTATGTCAATGCAATGTTCACACTCCATTAACCTGTTTCTACAGATGGCTGAGAGCCTGCTaGTTGTTGTGTTTGTTGATC | + |
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Preference number: 4 (lower is better) Translates to: CPILCQCNVHTPLTCFYRWLRAC*LLCLLI Trigger: GATCAACAAACACAACAATCAGCAGGCTCTCAGCCA...TCTGTAGAAACAGGTTAATGGAGTGTGAACATTGCATTGACATAGAATGGGACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR GCA 90 bp | TCATTCAGAAAATTGGCTGTTTCTGACTTGGCTGGTGTGAGAGCGTTGCTTTTTCTATCTGCTGCTTTTTaGCTCGCTGTAATCTGTTCA | + |
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Preference number: 4 (lower is better) Translates to: SFRKLAVSDLAGVRALLFLSAAF*LAVICS Trigger: TGAACAGATTACAGCGAGGCAAAAAGCAGCAGATAG...AAAAAGCAACGCTCTCACACCAGCCAAGTCAGAAACAGCCAATTTTCTGAATGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000190070.7 |
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| CDS-3UTR GCA 90 bp | AGAAAGAAAACTGAACATATCCCAGGTCTGTCCATGAAAGTAACAATGGTACATGTTGCTGTGTGTGGATaGGTTACTACAGTGGGAGCT | + |
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Preference number: 4 (lower is better) Translates to: RKKTEHIPGLSMKVTMVHVAVCG*VTTVGA Trigger: AGCTCCCACTGTAGTAACGCATCCACACACAGCAAC...ATGTACCATTGTTACTTTCATGGACAGACCTGGGATATGTTCAGTTTTCTTTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000076110.11 ENSMUST00000186415.7 ENSMUST00000187048.7 |
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| CDS-3UTR CCA 90 bp | ATGACTGACACTTTAGTTACAATGGTACCGGAAGTCTCTTCCTTCTATCAAAACAGTCATCAGAGGTTTTaGTCCGTTTGTTACTCGGGC | + |
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Preference number: 4 (lower is better) Translates to: MTDTLVTMVPEVSSFYQNSHQRF*SVCYSG Trigger: GCCCGAGTAACAAACGGACCAAAACCTCTGATGACT...GTTTTGATAGAAGGAAGAGACTTCCGGTACCATTGTAACTAAAGTGTCAGTCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR CCA 90 bp | TTGGCTGTTTCTGACTTGGCTGGTGTGAGAGCGTTGCTTTTTAAGTTTTTATTAAGTCATCAGAGGTTTTaGTCCGTTTGTTACTCGGGC | + |
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Preference number: 4 (lower is better) Translates to: LAVSDLAGVRALLFKFLLSHQRF*SVCYSG Trigger: GCCCGAGTAACAAACGGACCAAAACCTCTGATGACT...TAATAAAAACTTAAAAAGCAACGCTCTCACACCAGCCAAGTCAGAAACAGCCAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000190070.7 |
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| 3UTR CAA 72 bp | TCTAAGACATTAAGTCTGACTGGTCAGCAGAAAGTCTaGTGGTTCCCAGACTACCAACACTTTCTCAATACA | + |
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Preference number: 4 (lower is better) Translates to: SKTLSLTGQQKV*WFPDYQHFLNT Trigger: TGTATTGAGAAAGTGTTGGTAGTCTGGGAACCACAAGACTTTCTGCTGACCAGTCAGACTTAATGTCTTAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR TCA 90 bp | TGTCCCATTCTATGTCAATGCAATGTTCACACTCCATTAACCTGTTTCTACAGATCTGTTATTGCCTCCTaGGGTGTTCGTTGTAACTCA | + |
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Preference number: 4 (lower is better) Translates to: CPILCQCNVHTPLTCFYRSVIAS*GVRCNS Trigger: TGAGTTACAACGAACACCTCAGGAGGCAATAACAGA...TCTGTAGAAACAGGTTAATGGAGTGTGAACATTGCATTGACATAGAATGGGACA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR GCA 90 bp | AGAAAGAAAACTGAACATATCCCAGGTCTGTCCATGAAAGTAACAATGGTACATCAAGCCATCTGTTATTaGCTCCTGAGGTGTTCGTTG | + |
|
Preference number: 4 (lower is better) Translates to: RKKTEHIPGLSMKVTMVHQAICY*LLRCSL Trigger: CAACGAACACCTCAGGAGGCAATAACAGATGGCTTG...ATGTACCATTGTTACTTTCATGGACAGACCTGGGATATGTTCAGTTTTCTTTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000076110.11 ENSMUST00000186415.7 ENSMUST00000187048.7 |
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| CDS-3UTR GCA 90 bp | TCATTCAGAAAATTGGCTGTTTCTGACTTGGCTGGTGTGAGAGCGTTGCTTTTTCCATTTTCTATCTGCTaGTTTTTGCCTCGCTGTAAT | + |
|
Preference number: 4 (lower is better) Translates to: SFRKLAVSDLAGVRALLFPFSIC*FLPRCN Trigger: ATTACAGCGAGGCAAAAAGCAGCAGATAGAAAATGG...AAAAAGCAACGCTCTCACACCAGCCAAGTCAGAAACAGCCAATTTTCTGAATGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000190070.7 |
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| CDS-3UTR GCA 90 bp | AGAAAGAAAACTGAACATATCCCAGGTCTGTCCATGAAAGTAACAATGGTACATGTGCTCCTTGGTGGGTaGATAATAAAGTTCCATGGG | + |
|
Preference number: 4 (lower is better) Translates to: RKKTEHIPGLSMKVTMVHVLLGG*IIKFHG Trigger: CCCATGGAACTTTATTATGCACCCACCAAGGAGCAC...ATGTACCATTGTTACTTTCATGGACAGACCTGGGATATGTTCAGTTTTCTTTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000076110.11 ENSMUST00000186415.7 ENSMUST00000187048.7 |
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| CDS-3UTR CCA 90 bp | ATGACTGACACTTTAGTTACAATGGTACCGGAAGTCTCTTCCTTCTATCAAAACGATGCGTTACTACAGTaGGAGCTGTCACCATTATCT | + |
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Preference number: 4 (lower is better) Translates to: MTDTLVTMVPEVSSFYQNDALLQ*ELSPLS Trigger: AGATAATGGTGACAGCTCCCACTGTAGTAACGCATC...GTTTTGATAGAAGGAAGAGACTTCCGGTACCATTGTAACTAAAGTGTCAGTCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR CCA 90 bp | AGAAAGAAAACTGAACATATCCCAGGTCTGTCCATGAAAGTAACAATGGTACATAGTCATCAGAGGTTTTaGTCCGTTTGTTACTCGGGC | + |
|
Preference number: 4 (lower is better) Translates to: RKKTEHIPGLSMKVTMVHSHQRF*SVCYSG Trigger: GCCCGAGTAACAAACGGACCAAAACCTCTGATGACT...ATGTACCATTGTTACTTTCATGGACAGACCTGGGATATGTTCAGTTTTCTTTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000076110.11 ENSMUST00000186415.7 ENSMUST00000187048.7 |
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| CDS-3UTR CCA 90 bp | TTCAGAAAATTGGCTGTTTCTGACTTGGCTGGTGTGAGAGCGTTGCTTTTTAAGGTATCCAGGTTCATCTaGTTTGATTCTCCTTTGCTT | + |
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Preference number: 4 (lower is better) Translates to: FRKLAVSDLAGVRALLFKVSRFI*FDSPLL Trigger: AAGCAAAGGAGAATCAAACCAGATGAACCTGGATAC...CTTAAAAAGCAACGCTCTCACACCAGCCAAGTCAGAAACAGCCAATTTTCTGAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000190070.7 |
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| CDS-3UTR TCA 90 bp | AGAAAGAAAACTGAACATATCCCAGGTCTGTCCATGAAAGTAACAATGGTACATTCTGTTATTGCCTCCTaGGGTGTTCGTTGTAACTCA | + |
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Preference number: 4 (lower is better) Translates to: RKKTEHIPGLSMKVTMVHSVIAS*GVRCNS Trigger: TGAGTTACAACGAACACCTCAGGAGGCAATAACAGA...ATGTACCATTGTTACTTTCATGGACAGACCTGGGATATGTTCAGTTTTCTTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000076110.11 ENSMUST00000186415.7 ENSMUST00000187048.7 |
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| CDS-3UTR TCA 90 bp | AGCTGTCCCATTCTATGTCAATGCAATGTTCACACTCCATTAACCTGTTTCTACGATTGTTGTGTTTGTTaGTCCTTGCTAAGACCCTTT | + |
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Preference number: 4 (lower is better) Translates to: SCPILCQCNVHTPLTCFYDCCVC*SLLRPF Trigger: AAAGGGTCTTAGCAAGGATCAACAAACACAACAATC...GTAGAAACAGGTTAATGGAGTGTGAACATTGCATTGACATAGAATGGGACAGCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR GCA 90 bp | ATGACTGACACTTTAGTTACAATGGTACCGGAAGTCTCTTCCTTCTATCAAAACCTATCTGCTGCTTTTTaGCTCGCTGTAATCTGTTCA | + |
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Preference number: 4 (lower is better) Translates to: MTDTLVTMVPEVSSFYQNLSAAF*LAVICS Trigger: TGAACAGATTACAGCGAGGCAAAAAGCAGCAGATAG...GTTTTGATAGAAGGAAGAGACTTCCGGTACCATTGTAACTAAAGTGTCAGTCAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR GCA 90 bp | AGTCTTGTGGTTCCCAGACTACCAACACTTTCTCAATACAAAACTAAGGCTTCTCCATTTTCTATCTGCTaGTTTTTGCCTCGCTGTAAT | + |
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Preference number: 4 (lower is better) Translates to: SLVVPRLPTLSQYKTKASPFSIC*FLPRCN Trigger: ATTACAGCGAGGCAAAAAGCAGCAGATAGAAAATGG...AGAAGCCTTAGTTTTGTATTGAGAAAGTGTTGGTAGTCTGGGAACCACAAGACT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR GCA 90 bp | AGAAAGAAAACTGAACATATCCCAGGTCTGTCCATGAAAGTAACAATGGTACATCTATCTGCTGCTTTTTaGCTCGCTGTAATCCACTTC | + |
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Preference number: 4 (lower is better) Translates to: RKKTEHIPGLSMKVTMVHLSAAF*LAVIHF Trigger: GAAGTGGATTACAGCGAGGCAAAAAGCAGCAGATAG...ATGTACCATTGTTACTTTCATGGACAGACCTGGGATATGTTCAGTTTTCTTTCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000186415.7 |
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| CDS-3UTR CCA 90 bp | AGAAAGAAAACTGAACATATCCCAGGTCTGTCCATGAAAGTAACAATGGTACATGATGCGTTACTACAGTaGGAGCTGTCACCATTATCT | + |
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Preference number: 4 (lower is better) Translates to: RKKTEHIPGLSMKVTMVHDALLQ*ELSPLS Trigger: AGATAATGGTGACAGCTCCCACTGTAGTAACGCATC...ATGTACCATTGTTACTTTCATGGACAGACCTGGGATATGTTCAGTTTTCTTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000076110.11 ENSMUST00000186415.7 ENSMUST00000187048.7 |
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| CDS-3UTR CCA 90 bp | ATGACTGACACTTTAGTTACAATGGTACCGGAAGTCTCTTCCTTCTATCAAAACGTATCCAGGTTCATCTaGTTTGATTCTCCTTTGCTT | + |
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Preference number: 4 (lower is better) Translates to: MTDTLVTMVPEVSSFYQNVSRFI*FDSPLL Trigger: AAGCAAAGGAGAATCAAACCAGATGAACCTGGATAC...GTTTTGATAGAAGGAAGAGACTTCCGGTACCATTGTAACTAAAGTGTCAGTCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR GCA 90 bp | AGAAAGAAAACTGAACATATCCCAGGTCTGTCCATGAAAGTAACAATGGTACATCCATTTTCTATCTGCTaGTTTTTGCCTCGCTGTAAT | + |
|
Preference number: 4 (lower is better) Translates to: RKKTEHIPGLSMKVTMVHPFSIC*FLPRCN Trigger: ATTACAGCGAGGCAAAAAGCAGCAGATAGAAAATGG...ATGTACCATTGTTACTTTCATGGACAGACCTGGGATATGTTCAGTTTTCTTTCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000076110.11 ENSMUST00000186415.7 ENSMUST00000187048.7 |
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| CDS-3UTR CCA 90 bp | AGAAAGAAAACTGAACATATCCCAGGTCTGTCCATGAAAGTAACAATGGTACATGTATCCAGGTTCATCTaGTTTGATTCTCCTTTGCTT | + |
|
Preference number: 4 (lower is better) Translates to: RKKTEHIPGLSMKVTMVHVSRFI*FDSPLL Trigger: AAGCAAAGGAGAATCAAACCAGATGAACCTGGATAC...ATGTACCATTGTTACTTTCATGGACAGACCTGGGATATGTTCAGTTTTCTTTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000076110.11 ENSMUST00000186415.7 ENSMUST00000187048.7 |
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| CDS-3UTR CAA 90 bp | AGGCAGAATCCCAGTACTTGGGCAGGAGCATTACTCCAAAGTCAAGGCCAGCCTGAGGTTTTGGTCCGTTaGTTACTCGGGCCCGCTTCC | + |
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Preference number: 5 (lower is better) Translates to: RQNPSTWAGALLQSQGQPEVLVR*LLGPAS Trigger: GGAAGCGGGCCCGAGTAACAAACGGACCAAAACCTC...AGGCTGGCCTTGACTTTGGAGTAATGCTCCTGCCCAAGTACTGGGATTCTGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR CAA 90 bp | CCAGGCAGAATCCCAGTACTTGGGCAGGAGCATTACTCCAAAGTCAAGGCCAGCGAGTCATCAGAGGTTTaGGTCCGTTTGTTACTCGGG | + |
|
Preference number: 5 (lower is better) Translates to: PGRIPVLGQEHYSKVKASESSEV*VRLLLG Trigger: CCCGAGTAACAAACGGACCAAAACCTCTGATGACTC...GCTGGCCTTGACTTTGGAGTAATGCTCCTGCCCAAGTACTGGGATTCTGCCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR CAA 90 bp | TCATTCAGAAAATTGGCTGTTTCTGACTTGGCTGGTGTGAGAGCGTTGCTTTTTGAGGTTTTGGTCCGTTaGTTACTCGGGCCCGCTTCC | + |
|
Preference number: 5 (lower is better) Translates to: SFRKLAVSDLAGVRALLFEVLVR*LLGPAS Trigger: GGAAGCGGGCCCGAGTAACAAACGGACCAAAACCTC...AAAAAGCAACGCTCTCACACCAGCCAAGTCAGAAACAGCCAATTTTCTGAATGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000190070.7 |
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| CDS-3UTR CAA 90 bp | TGTCCCATTCTATGTCAATGCAATGTTCACACTCCATTAACCTGTTTCTACAGAGGGCCCGCTTCCTGGTaGCTGTGTGTGGATGCGTTA | + |
|
Preference number: 5 (lower is better) Translates to: CPILCQCNVHTPLTCFYRGPASW*LCVDAL Trigger: TAACGCATCCACACACAGCAACCAGGAAGCGGGCCC...TCTGTAGAAACAGGTTAATGGAGTGTGAACATTGCATTGACATAGAATGGGACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR CAA 90 bp | ATGACTGACACTTTAGTTACAATGGTACCGGAAGTCTCTTCCTTCTATCAAAACGGGCCCGCTTCCTGGTaGCTGTGTGTGGATGCGTTA | + |
|
Preference number: 5 (lower is better) Translates to: MTDTLVTMVPEVSSFYQNGPASW*LCVDAL Trigger: TAACGCATCCACACACAGCAACCAGGAAGCGGGCCC...GTTTTGATAGAAGGAAGAGACTTCCGGTACCATTGTAACTAAAGTGTCAGTCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR CAA 90 bp | AGCTGTCCCATTCTATGTCAATGCAATGTTCACACTCCATTAACCTGTTTCTACGAGGTTTTGGTCCGTTaGTTACTCGGGCCCGCTTCC | + |
|
Preference number: 5 (lower is better) Translates to: SCPILCQCNVHTPLTCFYEVLVR*LLGPAS Trigger: GGAAGCGGGCCCGAGTAACAAACGGACCAAAACCTC...GTAGAAACAGGTTAATGGAGTGTGAACATTGCATTGACATAGAATGGGACAGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR CAA 90 bp | AGAAAGAAAACTGAACATATCCCAGGTCTGTCCATGAAAGTAACAATGGTACATGGGCCCGCTTCCTGGTaGCTGTGTGTGGATGCGTTA | + |
|
Preference number: 5 (lower is better) Translates to: RKKTEHIPGLSMKVTMVHGPASW*LCVDAL Trigger: TAACGCATCCACACACAGCAACCAGGAAGCGGGCCC...ATGTACCATTGTTACTTTCATGGACAGACCTGGGATATGTTCAGTTTTCTTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000076110.11 ENSMUST00000186415.7 ENSMUST00000187048.7 |
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| CDS-3UTR CAA 90 bp | GCTGTTTCTGACTTGGCTGGTGTGAGAGCGTTGCTTTTTAAGTTTTTATTATTTGGGCCCGCTTCCTGGTaGCTGTGTGTGGATGCGTTA | + |
|
Preference number: 5 (lower is better) Translates to: AVSDLAGVRALLFKFLLFGPASW*LCVDAL Trigger: TAACGCATCCACACACAGCAACCAGGAAGCGGGCCC...AAATAATAAAAACTTAAAAAGCAACGCTCTCACACCAGCCAAGTCAGAAACAGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000190070.7 |
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| CDS-3UTR CAA 90 bp | AGAAAGAAAACTGAACATATCCCAGGTCTGTCCATGAAAGTAACAATGGTACATGAGGTTTTGGTCCGTTaGTTACTCGGGCCCGCTTCC | + |
|
Preference number: 5 (lower is better) Translates to: RKKTEHIPGLSMKVTMVHEVLVR*LLGPAS Trigger: GGAAGCGGGCCCGAGTAACAAACGGACCAAAACCTC...ATGTACCATTGTTACTTTCATGGACAGACCTGGGATATGTTCAGTTTTCTTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000076110.11 ENSMUST00000186415.7 ENSMUST00000187048.7 |
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| CDS-3UTR CAA 90 bp | AGTCTTGTGGTTCCCAGACTACCAACACTTTCTCAATACAAAACTAAGGCTTCTCCAAGCCATCTGTTATaGCCTCCTGAGGTGTTCGTT | + |
|
Preference number: 5 (lower is better) Translates to: SLVVPRLPTLSQYKTKASPSHLL*PPEVFV Trigger: AACGAACACCTCAGGAGGCAATAACAGATGGCTTGG...AGAAGCCTTAGTTTTGTATTGAGAAAGTGTTGGTAGTCTGGGAACCACAAGACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR CAA 90 bp | AGTCTTGTGGTTCCCAGACTACCAACACTTTCTCAATACAAAACTAAGGCTTCTCAGGTAGGACACTCTTaGTTGCCACTTCTAAGGGCT | + |
|
Preference number: 5 (lower is better) Translates to: SLVVPRLPTLSQYKTKASQVGHS*LPLLRA Trigger: AGCCCTTAGAAGTGGCAACAAAGAGTGTCCTACCTG...AGAAGCCTTAGTTTTGTATTGAGAAAGTGTTGGTAGTCTGGGAACCACAAGACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR CAA 90 bp | ATGACTGACACTTTAGTTACAATGGTACCGGAAGTCTCTTCCTTCTATCAAAACCAGGTAGGACACTCTTaGTTGCCACTTCTAAGGGCT | + |
|
Preference number: 5 (lower is better) Translates to: MTDTLVTMVPEVSSFYQNQVGHS*LPLLRA Trigger: AGCCCTTAGAAGTGGCAACAAAGAGTGTCCTACCTG...GTTTTGATAGAAGGAAGAGACTTCCGGTACCATTGTAACTAAAGTGTCAGTCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR CAA 90 bp | TGTCCCATTCTATGTCAATGCAATGTTCACACTCCATTAACCTGTTTCTACAGAGAGTCATCAGAGGTTTaGGTCCGTTTGTTACTCGGG | + |
|
Preference number: 5 (lower is better) Translates to: CPILCQCNVHTPLTCFYRESSEV*VRLLLG Trigger: CCCGAGTAACAAACGGACCAAAACCTCTGATGACTC...TCTGTAGAAACAGGTTAATGGAGTGTGAACATTGCATTGACATAGAATGGGACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR CAA 90 bp | TTGGCTGTTTCTGACTTGGCTGGTGTGAGAGCGTTGCTTTTTAAGTTTTTATTAGAGTCATCAGAGGTTTaGGTCCGTTTGTTACTCGGG | + |
|
Preference number: 5 (lower is better) Translates to: LAVSDLAGVRALLFKFLLESSEV*VRLLLG Trigger: CCCGAGTAACAAACGGACCAAAACCTCTGATGACTC...TAATAAAAACTTAAAAAGCAACGCTCTCACACCAGCCAAGTCAGAAACAGCCAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000190070.7 |
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| CDS-3UTR CAA 90 bp | TTCAGAAAATTGGCTGTTTCTGACTTGGCTGGTGTGAGAGCGTTGCTTTTTAAGATCGCCACTGCTGCATaGTTGTTATCAAGTTCAAGC | + |
|
Preference number: 5 (lower is better) Translates to: FRKLAVSDLAGVRALLFKIATAA*LLSSSS Trigger: GCTTGAACTTGATAACAACAATGCAGCAGTGGCGAT...CTTAAAAAGCAACGCTCTCACACCAGCCAAGTCAGAAACAGCCAATTTTCTGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000190070.7 |
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| CDS-3UTR CAA 90 bp | AGAAAGAAAACTGAACATATCCCAGGTCTGTCCATGAAAGTAACAATGGTACATCCAAGCCATCTGTTATaGCCTCCTGAGGTGTTCGTT | + |
|
Preference number: 5 (lower is better) Translates to: RKKTEHIPGLSMKVTMVHPSHLL*PPEVFV Trigger: AACGAACACCTCAGGAGGCAATAACAGATGGCTTGG...ATGTACCATTGTTACTTTCATGGACAGACCTGGGATATGTTCAGTTTTCTTTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000076110.11 ENSMUST00000186415.7 ENSMUST00000187048.7 |
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| CDS-3UTR CAA 90 bp | AGTCTTGTGGTTCCCAGACTACCAACACTTTCTCAATACAAAACTAAGGCTTCTTCTATCTGCTGCTTTTaGCCTCGCTGTAATCTGTTC | + |
|
Preference number: 5 (lower is better) Translates to: SLVVPRLPTLSQYKTKASSICCF*PRCNLF Trigger: GAACAGATTACAGCGAGGCAAAAAGCAGCAGATAGA...AGAAGCCTTAGTTTTGTATTGAGAAAGTGTTGGTAGTCTGGGAACCACAAGACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR CAA 90 bp | AGAAAGAAAACTGAACATATCCCAGGTCTGTCCATGAAAGTAACAATGGTACATGAGTCATCAGAGGTTTaGGTCCGTTTGTTACTCGGG | + |
|
Preference number: 5 (lower is better) Translates to: RKKTEHIPGLSMKVTMVHESSEV*VRLLLG Trigger: CCCGAGTAACAAACGGACCAAAACCTCTGATGACTC...ATGTACCATTGTTACTTTCATGGACAGACCTGGGATATGTTCAGTTTTCTTTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000076110.11 ENSMUST00000186415.7 ENSMUST00000187048.7 |
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| CDS-3UTR CAA 90 bp | AGTCTTGTGGTTCCCAGACTACCAACACTTTCTCAATACAAAACTAAGGCTTCTATCGCCACTGCTGCATaGTTGTTATCAAGTTCAAGC | + |
|
Preference number: 5 (lower is better) Translates to: SLVVPRLPTLSQYKTKASIATAA*LLSSSS Trigger: GCTTGAACTTGATAACAACAATGCAGCAGTGGCGAT...AGAAGCCTTAGTTTTGTATTGAGAAAGTGTTGGTAGTCTGGGAACCACAAGACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS-3UTR CAA 90 bp | AGAAAGAAAACTGAACATATCCCAGGTCTGTCCATGAAAGTAACAATGGTACATATCGCCACTGCTGCATaGTTGTTATCAAGTTCAAGC | + |
|
Preference number: 5 (lower is better) Translates to: RKKTEHIPGLSMKVTMVHIATAA*LLSSSS Trigger: GCTTGAACTTGATAACAACAATGCAGCAGTGGCGAT...ATGTACCATTGTTACTTTCATGGACAGACCTGGGATATGTTCAGTTTTCTTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000076110.11 ENSMUST00000186415.7 ENSMUST00000187048.7 |
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| CDS-3UTR CAA 90 bp | GCTGTTTCTGACTTGGCTGGTGTGAGAGCGTTGCTTTTTAAGTTTTTATTATTTGTTCACATGTCTTTCTaGGAAATGGTAAGGGCCATC | + |
|
Preference number: 5 (lower is better) Translates to: AVSDLAGVRALLFKFLLFVHMSF*EMVRAI Trigger: GATGGCCCTTACCATTTCCAAGAAAGACATGTGAAC...AAATAATAAAAACTTAAAAAGCAACGCTCTCACACCAGCCAAGTCAGAAACAGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000190070.7 |
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| CDS-3UTR CAA 90 bp | AGAAAGAAAACTGAACATATCCCAGGTCTGTCCATGAAAGTAACAATGGTACATTCTATCTGCTGCTTTTaGCCTCGCTGTAATCCACTT | + |
|
Preference number: 5 (lower is better) Translates to: RKKTEHIPGLSMKVTMVHSICCF*PRCNPL Trigger: AAGTGGATTACAGCGAGGCAAAAAGCAGCAGATAGA...ATGTACCATTGTTACTTTCATGGACAGACCTGGGATATGTTCAGTTTTCTTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000186415.7 |
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| CDS GCA 72 bp | ATTGACCTGGAGGCTCTGGCTCTCAGGCAGCAGGGATaGAGGCGAGTACCACGGTCCAGCTCCGCCGTTACT | + |
|
Preference number: 6 (lower is better) Translates to: IDLEALALRQQG*RRVPRSSSAVT Trigger: AGTAACGGCGGAGCTGGACCGTGGTACTCGCCTGCATCCCTGCTGCCTGAGAGCCAGAGCCTCCAGGTCAAT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000190070.7 |
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| CDS CCA 72 bp | CAGCTCCGCCGTTACTCTCATACCTCTACTGGTTTGTaGTGGTTTCTCGGTGAACTGGCCACTGGCTGTGGC | + |
|
Preference number: 6 (lower is better) Translates to: QLRRYSHTSTGL*WFLGELATGCG Trigger: GCCACAGCCAGTGGCCAGTTCACCGAGAAACCACCACAAACCAGTAGAGGTATGAGAGTAACGGCGGAGCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000190070.7 |
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| CDS CAA 72 bp | GTCCAGCTCCGCCGTTACTCTCATACCTCTACTGGTTaGTGGTGGTTTCTCGGTGAACTGGCCACTGGCTGT | + |
|
Preference number: 6 (lower is better) Translates to: VQLRRYSHTSTG*WWFLGELATGC Trigger: ACAGCCAGTGGCCAGTTCACCGAGAAACCACCACAAACCAGTAGAGGTATGAGAGTAACGGCGGAGCTGGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000190070.7 |
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| CDS GCA 72 bp | GTTACTCGGGCCCGCTTCCTGGTTGCTGTGTGTGGATaGGTTACTACAGTGGGAGCTGTCACCATTATCTTC | + |
|
Preference number: 6 (lower is better) Translates to: VTRARFLVAVCG*VTTVGAVTIIF Trigger: GAAGATAATGGTGACAGCTCCCACTGTAGTAACGCATCCACACACAGCAACCAGGAAGCGGGCCCGAGTAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000076110.11 ENSMUST00000186415.7 ENSMUST00000187048.7 ENSMUST00000190070.7 |
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| CDS CCA 72 bp | CTATCTGCTGCTTTTTGCCTCGCTGTAATCTGTTCATaGCCTGTATCTTCAGCCCCTCCTCGATGCTGTGGC | + |
|
Preference number: 6 (lower is better) Translates to: LSAAFCLAVICS*PVSSAPPRCCG Trigger: GCCACAGCATCGAGGAGGGGCTGAAGATACAGGCCATGAACAGATTACAGCGAGGCAAAAAGCAGCAGATAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000076110.11 ENSMUST00000187048.7 |
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| CDS CCA 72 bp | GTTTGTTACTCGGGCCCGCTTCCTGGTTGCTGTGTGTaGATGCGTTACTACAGTGGGAGCTGTCACCATTAT | + |
|
Preference number: 6 (lower is better) Translates to: VCYSGPLPGCCV*MRYYSGSCHHY Trigger: ATAATGGTGACAGCTCCCACTGTAGTAACGCATCCACACACAGCAACCAGGAAGCGGGCCCGAGTAACAAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000076110.11 ENSMUST00000186415.7 ENSMUST00000187048.7 ENSMUST00000190070.7 |
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