RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RNF19A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022280

Ensembl transcript IDs: ENSMUST00000022890.10, ENSMUST00000228358.2

Found 215 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACAGGAAGCAGCTTTGGAAAGCAGAGCGCTGCTGCACTGGTGTGGTaGGTTCTCCAGTCGGTCGTTTTCTACCTCAGGAAGGGTGTTCAC +
Preference number: 1 (lower is better)
Translates to: TGSSFGKQSAAALVW*VLQSVVFYLRKGVH
Trigger: GTGAACACCCTTCCTGAGGTAGAAAACGACCGACTGGAGAACTCACCACACCAGTGCAGCAGCGCTCTGCTTTCCAAAGCTGCTTCCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
3UTR GCA 90 bp CAGCTAAAAGAGCTGGCACTAGTGTTCTCTAAGCAGATTAATGGATaGAGCGAGGAAAACGACGGACGGCACACGGCTGCAGCCCGGACA +
Preference number: 1 (lower is better)
Translates to: QLKELALVFSKQING*SEENDGRHTAAART
Trigger: TGTCCGGGCTGCAGCCGTGTGCCGTCCGTCGTTTTCCTCGCTGCATCCATTAATCTGCTTAGAGAACACTAGTGCCAGCTCTTTTAGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
3UTR GCA 90 bp GTGGGACATCTGAACAGGAAGCAGCTTTGGAAAGCAGAGCGCTGCTaGACTGGTGTGGTGAGTTCTCCAGTCGGTCGTTTTCTACCTCAG +
Preference number: 1 (lower is better)
Translates to: VGHLNRKQLWKAERC*TGVVSSPVGRFLPQ
Trigger: CTGAGGTAGAAAACGACCGACTGGAGAACTCACCACACCAGTGCAGCAGCGCTCTGCTTTCCAAAGCTGCTTCCTGTTCAGATGTCCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
3UTR GCA 90 bp GCTGTGGGACATCTGAACAGGAAGCAGCTTTGGAAAGCAGAGCGCTaGTGCACTGGTGTGGTGAGTTCTCCAGTCGGTCGTTTTCTACCT +
Preference number: 1 (lower is better)
Translates to: AVGHLNRKQLWKAER*CTGVVSSPVGRFLP
Trigger: AGGTAGAAAACGACCGACTGGAGAACTCACCACACCAGTGCAGCAGCGCTCTGCTTTCCAAAGCTGCTTCCTGTTCAGATGTCCCACAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
3UTR CCA 90 bp ACATCTGAACAGGAAGCAGCTTTGGAAAGCAGAGCGCTGCTGCACTaGTGTGGTGAGTTCTCCAGTCGGTCGTTTTCTACCTCAGGAAGG +
Preference number: 1 (lower is better)
Translates to: TSEQEAALESRALLH*CGEFSSRSFSTSGR
Trigger: CCTTCCTGAGGTAGAAAACGACCGACTGGAGAACTCACCACACCAGTGCAGCAGCGCTCTGCTTTCCAAAGCTGCTTCCTGTTCAGATGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
3UTR TCA 90 bp AGGGTGTTCACAGCTGTGAAGCGGGCGTGGCAATCACTGGAGCCGTaGCTACAGGACGTTCTCATGCTTTCTAAGTCTGAGCAGCTAAAT +
Preference number: 1 (lower is better)
Translates to: RVFTAVKRAWQSLEP*LQDVLMLSKSEQLN
Trigger: ATTTAGCTGCTCAGACTTAGAAAGCATGAGAACGTCCTGTAGTCACGGCTCCAGTGATTGCCACGCCCGCTTCACAGCTGTGAACACCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
3UTR TCA 90 bp AAAAATGACTGGAGTGGGAATCTGCTACAGACGGCATGCTGTCACTaGGGGATGGCGCCTCAAACTCACTTGAGTTCGTGCTTTGTTGCT +
Preference number: 1 (lower is better)
Translates to: KNDWSGNLLQTACCH*GMAPQTHLSSCFVA
Trigger: AGCAACAAAGCACGAACTCAAGTGAGTTTGAGGCGCCATCCCTCAGTGACAGCATGCCGTCTGTAGCAGATTCCCACTCCAGTCATTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
3UTR GCA 90 bp TCACTGAGGGATGGCGCCTCAAACTCACTTGAGTTCGTGCTTTGTTaGTCTAACAACTGTGCATCCATGTCCTCTCTGGTCTCATTGATC +
Preference number: 1 (lower is better)
Translates to: SLRDGASNSLEFVLC*SNNCASMSSLVSLI
Trigger: GATCAATGAGACCAGAGAGGACATGGATGCACAGTTGTTAGAGCAACAAAGCACGAACTCAAGTGAGTTTGAGGCGCCATCCCTCAGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
3UTR GCA 90 bp GCATTCACGGGCCTAAATTTCAGTCTGGACAGCAACTTTCAGGTCTaGTGTCTGGTGCGAGTGGTTATTATTTGTCTCTCTCAGTGCATC +
Preference number: 1 (lower is better)
Translates to: AFTGLNFSLDSNFQV*CLVRVVIICLSQCI
Trigger: GATGCACTGAGAGAGACAAATAATAACCACTCGCACCAGACAGCAGACCTGAAAGTTGCTGTCCAGACTGAAATTTAGGCCCGTGAATGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
3UTR GCA 90 bp ATGGTTCAACCAGCTCCCAACACGGTTGTTCAGTGGTTCTTACTCTaGAGCATTCACGGGCCTAAATTTCAGTCTGGACAGCAACTTTCA +
Preference number: 1 (lower is better)
Translates to: MVQPAPNTVVQWFLL*SIHGPKFQSGQQLS
Trigger: TGAAAGTTGCTGTCCAGACTGAAATTTAGGCCCGTGAATGCTGCAGAGTAAGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
3UTR CCA 90 bp TCTGCCACTGTCAGTCCCTTAGTTACCTTTTACCGTCTTCTAAAATaGCAACAACCACACTTGAGATATGTAACAGTACCAAGTATTTCT +
Preference number: 1 (lower is better)
Translates to: SATVSPLVTFYRLLK*QQPHLRYVTVPSIS
Trigger: AGAAATACTTGGTACTGTTACATATCTCAAGTGTGGTTGTTGCCATTTTAGAAGACGGTAAAAGGTAACTAAGGGACTGACAGTGGCAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
3UTR-3UTR TCA 90 bp TGGTGCCATGCTCGTCTGCAGCATGGCTGGGCTGTGGGACATCTGAACAGGAAGCCTCTCTGGTCTCATTaGTCTTCATGTTACCCTTTT +
Preference number: 2 (lower is better)
Translates to: WCHARLQHGWAVGHLNRKPLWSH*SSCYPF
Trigger: AAAAGGGTAACATGAAGATCAATGAGACCAGAGAGG...CTTCCTGTTCAGATGTCCCACAGCCCAGCCATGCTGCAGACGAGCATGGCACCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
3UTR-3UTR CCA 90 bp TACTCTGCAGCATTCACGGGCCTAAATTTCAGTCTGGACAGCAACTTTCAGGTCTGCTCGTCTGCAGCATaGCTGGGCTGTGGGACATCT +
Preference number: 2 (lower is better)
Translates to: YSAAFTGLNFSLDSNFQVCSSAA*LGCGTS
Trigger: AGATGTCCCACAGCCCAGCCATGCTGCAGACGAGCA...GACCTGAAAGTTGCTGTCCAGACTGAAATTTAGGCCCGTGAATGCTGCAGAGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
3UTR-3UTR CCA 90 bp CTGCTGCACTGGTGTGGTGAGTTCTCCAGTCGGTCGTTTTCTACCTCAGGAAGGATTCAGAAAAATGACTaGAGTGGGAATCTGCTACAG +
Preference number: 2 (lower is better)
Translates to: LLHWCGEFSSRSFSTSGRIQKND*SGNLLQ
Trigger: CTGTAGCAGATTCCCACTCCAGTCATTTTTCTGAAT...CCTTCCTGAGGTAGAAAACGACCGACTGGAGAACTCACCACACCAGTGCAGCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
3UTR CAA 90 bp CTTAAGCTTAACAGTCGCACATGGTTCAACCAGCTCCCAACACGGTaGTTCAGTGGTTCTTACTCTGCAGCATTCACGGGCCTAAATTTC +
Preference number: 2 (lower is better)
Translates to: LKLNSRTWFNQLPTR*FSGSYSAAFTGLNF
Trigger: GAAATTTAGGCCCGTGAATGCTGCAGAGTAAGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCATGTGCGACTGTTAAGCTTAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
3UTR-3UTR TCA 90 bp TTTTCTACCTCAGGAAGGGTGTTCACAGCTGTGAAGCGGGCGTGGCAATCACTGTTTGCATTACGATTATaGAACCTGGCTTTTGCTGGT +
Preference number: 2 (lower is better)
Translates to: FSTSGRVFTAVKRAWQSLFALRL*NLAFAG
Trigger: ACCAGCAAAAGCCAGGTTTCATAATCGTAATGCAAA...CAGTGATTGCCACGCCCGCTTCACAGCTGTGAACACCCTTCCTGAGGTAGAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
3UTR-3UTR CCA 90 bp ACGAGGCTCATAAAACCCAGTCTCTCCCAAAGGCACCAAGAATCAAAGGGCACTTACCGTCTTCTAAAATaGCAACAACCACACTTGAGA +
Preference number: 2 (lower is better)
Translates to: TRLIKPSLSQRHQESKGTYRLLK*QQPHLR
Trigger: TCTCAAGTGTGGTTGTTGCCATTTTAGAAGACGGTA...AGTGCCCTTTGATTCTTGGTGCCTTTGGGAGAGACTGGGTTTTATGAGCCTCGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
3UTR-3UTR GCA 90 bp ACGAGGCTCATAAAACCCAGTCTCTCCCAAAGGCACCAAGAATCAAAGGGCACTAAATACACAGGTATGTaGATCAAGCAGTGTTTTGTG +
Preference number: 2 (lower is better)
Translates to: TRLIKPSLSQRHQESKGTKYTGM*IKQCFV
Trigger: CACAAAACACTGCTTGATGCACATACCTGTGTATTT...AGTGCCCTTTGATTCTTGGTGCCTTTGGGAGAGACTGGGTTTTATGAGCCTCGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
3UTR-3UTR CCA 90 bp GCCACCATCTTGCTCAAGTGTCTAAGTATCCAAATGGTTACCAATGGGCTGCATAACACGGTTGTTCAGTaGTTCTTACTCTGCAGCATT +
Preference number: 2 (lower is better)
Translates to: ATILLKCLSIQMVTNGLHNTVVQ*FLLCSI
Trigger: AATGCTGCAGAGTAAGAACCACTGAACAACCGTGTT...ATGCAGCCCATTGGTAACCATTTGGATACTTAGACACTTGAGCAAGATGGTGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
3UTR-3UTR TCA 90 bp TGGTTACCAATGGGCTGCATTAAGCTTGATATCCACATTGCATATGAAGAAATGCGCCTCAAACTCACTTaGGTTCGTGCTTTGTTGCTC +
Preference number: 2 (lower is better)
Translates to: WLPMGCIKLDIHIAYEEMRLKLT*VRALLL
Trigger: GAGCAACAAAGCACGAACTCAAGTGAGTTTGAGGCG...CATTTCTTCATATGCAATGTGGATATCAAGCTTAATGCAGCCCATTGGTAACCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
3UTR-3UTR CCA 90 bp TGGTTATTATTTGTCTCTCTCAGTGCATCACCAAAACACAAATCCACCATAGGCCTTAACAGTCGCACATaGTTCAACCAGCTCCCAACA +
Preference number: 2 (lower is better)
Translates to: WLLFVSLSASPKHKSTIGLNSRT*FNQLPT
Trigger: TGTTGGGAGCTGGTTGAACCATGTGCGACTGTTAAG...GCCTATGGTGGATTTGTGTTTTGGTGATGCACTGAGAGAGACAAATAATAACCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
3UTR CAA 90 bp TACCAAGTATTTCTACTTCAGAGTTGTGCAAAAACTGCCACCATCTaGCTCAAGTGTCTAAGTATCCAAATGGTTACCAATGGGCTGCAT +
Preference number: 2 (lower is better)
Translates to: YQVFLLQSCAKTATI*LKCLSIQMVTNGLH
Trigger: ATGCAGCCCATTGGTAACCATTTGGATACTTAGACACTTGAGCAAGATGGTGGCAGTTTTTGCACAACTCTGAAGTAGAAATACTTGGTA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
3UTR-3UTR TCA 90 bp AAAGAGCTGGCACTAGTGTTCTCTAAGCAGATTAATGGATGCAGCGAGGAAAACTGTGTCTTTGGTAGGTaGATACTTTTTCAGTGTAGT +
Preference number: 2 (lower is better)
Translates to: KELALVFSKQINGCSEENCVFGR*ILFQCS
Trigger: ACTACACTGAAAAAGTATTCACCTACCAAAGACACA...GTTTTCCTCGCTGCATCCATTAATCTGCTTAGAGAACACTAGTGCCAGCTCTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
3UTR-3UTR GCA 90 bp TGGTTACCAATGGGCTGCATTAAGCTTGATATCCACATTGCATATGAAGAAATGGAGTTCGTGCTTTGTTaGTCTAACAACTGTGCATCC +
Preference number: 2 (lower is better)
Translates to: WLPMGCIKLDIHIAYEEMEFVLC*SNNCAS
Trigger: GGATGCACAGTTGTTAGAGCAACAAAGCACGAACTC...CATTTCTTCATATGCAATGTGGATATCAAGCTTAATGCAGCCCATTGGTAACCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
3UTR CAA 90 bp CCCTTAGTTACCTTTTACCGTCTTCTAAAATGGCAACAACCACACTaGAGATATGTAACAGTACCAAGTATTTCTACTTCAGAGTTGTGC +
Preference number: 2 (lower is better)
Translates to: PLVTFYRLLKWQQPH*RYVTVPSISTSELC
Trigger: GCACAACTCTGAAGTAGAAATACTTGGTACTGTTACATATCTCAAGTGTGGTTGTTGCCATTTTAGAAGACGGTAAAAGGTAACTAAGGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
3UTR TCA 72 bp GGTCGTTTTCTACCTCAGGAAGGGTGTTCACAGCTGTaGAGCGGGCGTGGCAATCACTGGAGCCGTGACTAC +
Preference number: 3 (lower is better)
Translates to: GRFLPQEGCSQL*SGRGNHWSRDY
Trigger: GTAGTCACGGCTCCAGTGATTGCCACGCCCGCTTCACAGCTGTGAACACCCTTCCTGAGGTAGAAAACGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
3UTR TCA 72 bp ATGCTCGTCTGCAGCATGGCTGGGCTGTGGGACATCTaGACAGGAAGCAGCTTTGGAAAGCAGAGCGCTGCT +
Preference number: 3 (lower is better)
Translates to: MLVCSMAGLWDI*TGSSFGKQSAA
Trigger: AGCAGCGCTCTGCTTTCCAAAGCTGCTTCCTGTTCAGATGTCCCACAGCCCAGCCATGCTGCAGACGAGCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
3UTR TCA 72 bp TGGAGTGGGAATCTGCTACAGACGGCATGCTGTCACTaGGGGATGGCGCCTCAAACTCACTTGAGTTCGTGC +
Preference number: 3 (lower is better)
Translates to: WSGNLLQTACCH*GMAPQTHLSSC
Trigger: GCACGAACTCAAGTGAGTTTGAGGCGCCATCCCTCAGTGACAGCATGCCGTCTGTAGCAGATTCCCACTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
3UTR GCA 72 bp CATCTGAACAGGAAGCAGCTTTGGAAAGCAGAGCGCTaGTGCACTGGTGTGGTGAGTTCTCCAGTCGGTCGT +
Preference number: 3 (lower is better)
Translates to: HLNRKQLWKAER*CTGVVSSPVGR
Trigger: ACGACCGACTGGAGAACTCACCACACCAGTGCAGCAGCGCTCTGCTTTCCAAAGCTGCTTCCTGTTCAGATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
3UTR CCA 72 bp CAGGAAGCAGCTTTGGAAAGCAGAGCGCTGCTGCACTaGTGTGGTGAGTTCTCCAGTCGGTCGTTTTCTACC +
Preference number: 3 (lower is better)
Translates to: QEAALESRALLH*CGEFSSRSFST
Trigger: GGTAGAAAACGACCGACTGGAGAACTCACCACACCAGTGCAGCAGCGCTCTGCTTTCCAAAGCTGCTTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
3UTR TCA 72 bp ACAGCTGTGAAGCGGGCGTGGCAATCACTGGAGCCGTaGCTACAGGACGTTCTCATGCTTTCTAAGTCTGAG +
Preference number: 3 (lower is better)
Translates to: TAVKRAWQSLEP*LQDVLMLSKSE
Trigger: CTCAGACTTAGAAAGCATGAGAACGTCCTGTAGTCACGGCTCCAGTGATTGCCACGCCCGCTTCACAGCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
3UTR GCA 72 bp GAGCTGGCACTAGTGTTCTCTAAGCAGATTAATGGATaGAGCGAGGAAAACGACGGACGGCACACGGCTGCA +
Preference number: 3 (lower is better)
Translates to: ELALVFSKQING*SEENDGRHTAA
Trigger: TGCAGCCGTGTGCCGTCCGTCGTTTTCCTCGCTGCATCCATTAATCTGCTTAGAGAACACTAGTGCCAGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
3UTR GCA 72 bp CTGAACAGGAAGCAGCTTTGGAAAGCAGAGCGCTGCTaGACTGGTGTGGTGAGTTCTCCAGTCGGTCGTTTT +
Preference number: 3 (lower is better)
Translates to: LNRKQLWKAERC*TGVVSSPVGRF
Trigger: AAAACGACCGACTGGAGAACTCACCACACCAGTGCAGCAGCGCTCTGCTTTCCAAAGCTGCTTCCTGTTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
3UTR-3UTR CAA 90 bp ACGAGGCTCATAAAACCCAGTCTCTCCCAAAGGCACCAAGAATCAAAGGGCACTGAACAGGAAGCAGCTTaGGAAAGCAGAGCGCTGCTG +
Preference number: 3 (lower is better)
Translates to: TRLIKPSLSQRHQESKGTEQEAA*ESRALL
Trigger: CAGCAGCGCTCTGCTTTCCAAAGCTGCTTCCTGTTC...AGTGCCCTTTGATTCTTGGTGCCTTTGGGAGAGACTGGGTTTTATGAGCCTCGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
3UTR GCA 72 bp CCAGCTCCCAACACGGTTGTTCAGTGGTTCTTACTCTaGAGCATTCACGGGCCTAAATTTCAGTCTGGACAG +
Preference number: 3 (lower is better)
Translates to: PAPNTVVQWFLL*SIHGPKFQSGQ
Trigger: CTGTCCAGACTGAAATTTAGGCCCGTGAATGCTGCAGAGTAAGAACCACTGAACAACCGTGTTGGGAGCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
3UTR GCA 72 bp GATGGCGCCTCAAACTCACTTGAGTTCGTGCTTTGTTaGTCTAACAACTGTGCATCCATGTCCTCTCTGGTC +
Preference number: 3 (lower is better)
Translates to: DGASNSLEFVLC*SNNCASMSSLV
Trigger: GACCAGAGAGGACATGGATGCACAGTTGTTAGAGCAACAAAGCACGAACTCAAGTGAGTTTGAGGCGCCATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
3UTR CCA 72 bp CACATGGTTCAACCAGCTCCCAACACGGTTGTTCAGTaGTTCTTACTCTGCAGCATTCACGGGCCTAAATTT +
Preference number: 3 (lower is better)
Translates to: HMVQPAPNTVVQ*FLLCSIHGPKF
Trigger: AAATTTAGGCCCGTGAATGCTGCAGAGTAAGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCATGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
3UTR-3UTR CAA 90 bp ACGAGGCTCATAAAACCCAGTCTCTCCCAAAGGCACCAAGAATCAAAGGGCACTTGGGCTGCATTAAGCTaGATATCCACATTGCATATG +
Preference number: 3 (lower is better)
Translates to: TRLIKPSLSQRHQESKGTWAALS*ISTLHM
Trigger: CATATGCAATGTGGATATCAAGCTTAATGCAGCCCA...AGTGCCCTTTGATTCTTGGTGCCTTTGGGAGAGACTGGGTTTTATGAGCCTCGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
3UTR-3UTR CAA 90 bp GCTGTGTGGGAAGTCAATAGTGCAGGCAGTATTTTGGCCAACTTCTGCTCGTGTTGGCAACAACCACACTaGAGATATGTAACAGTACCA +
Preference number: 3 (lower is better)
Translates to: AVWEVNSAGSILANFCSCWQQPH*RYVTVP
Trigger: TGGTACTGTTACATATCTCAAGTGTGGTTGTTGCCA...ACACGAGCAGAAGTTGGCCAAAATACTGCCTGCACTATTGACTTCCCACACAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
3UTR-3UTR CAA 90 bp ACGAGGCTCATAAAACCCAGTCTCTCCCAAAGGCACCAAGAATCAAAGGGCACTTGGCAACAACCACACTaGAGATATGTAACAGTACCA +
Preference number: 3 (lower is better)
Translates to: TRLIKPSLSQRHQESKGTWQQPH*RYVTVP
Trigger: TGGTACTGTTACATATCTCAAGTGTGGTTGTTGCCA...AGTGCCCTTTGATTCTTGGTGCCTTTGGGAGAGACTGGGTTTTATGAGCCTCGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
3UTR GCA 72 bp TCAGTCTGGACAGCAACTTTCAGGTCTGCTGTCTGGTaGGAGTGGTTATTATTTGTCTCTCTCAGTGCATCA +
Preference number: 3 (lower is better)
Translates to: SVWTATFRSAVW*EWLLFVSLSAS
Trigger: TGATGCACTGAGAGAGACAAATAATAACCACTCGCACCAGACAGCAGACCTGAAAGTTGCTGTCCAGACTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
3UTR GCA 72 bp GGCCTAAATTTCAGTCTGGACAGCAACTTTCAGGTCTaGTGTCTGGTGCGAGTGGTTATTATTTGTCTCTCT +
Preference number: 3 (lower is better)
Translates to: GLNFSLDSNFQV*CLVRVVIICLS
Trigger: AGAGAGACAAATAATAACCACTCGCACCAGACAGCAGACCTGAAAGTTGCTGTCCAGACTGAAATTTAGGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
3UTR-3UTR CAA 90 bp GTAATCTGCCACGTTCCATCCCTTAGTGGTTTCAATAAAATGTCACTAACCACTAAAACTGCCACCATCTaGCTCAAGTGTCTAAGTATC +
Preference number: 3 (lower is better)
Translates to: VICHVPSLSGFNKMSLTTKTATI*LKCLSI
Trigger: GATACTTAGACACTTGAGCAAGATGGTGGCAGTTTT...AGTGGTTAGTGACATTTTATTGAAACCACTAAGGGATGGAACGTGGCAGATTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
3UTR CCA 72 bp CTTGCTCAAGTGTCTAAGTATCCAAATGGTTACCAATaGGCTGCATTAAGCTTGATATCCACATTGCATATG +
Preference number: 3 (lower is better)
Translates to: LAQVSKYPNGYQ*AALSLISTLHM
Trigger: CATATGCAATGTGGATATCAAGCTTAATGCAGCCCATTGGTAACCATTTGGATACTTAGACACTTGAGCAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
3UTR CCA 72 bp GTCAGTCCCTTAGTTACCTTTTACCGTCTTCTAAAATaGCAACAACCACACTTGAGATATGTAACAGTACCA +
Preference number: 3 (lower is better)
Translates to: VSPLVTFYRLLK*QQPHLRYVTVP
Trigger: TGGTACTGTTACATATCTCAAGTGTGGTTGTTGCCATTTTAGAAGACGGTAAAAGGTAACTAAGGGACTGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
3UTR-3UTR CAA 90 bp ATTTCATGTCTGCTGTTCACACACTCATTACTGAACAAAATTGGAATGCAAACAAGCCTGAGTGTGTCTTaGGTAGGTGAATACTTTTTC +
Preference number: 3 (lower is better)
Translates to: ISCLLFTHSLLNKIGMQTSLSVS*VGEYFF
Trigger: GAAAAAGTATTCACCTACCAAAGACACACTCAGGCT...TGTTTGCATTCCAATTTTGTTCAGTAATGAGTGTGTGAACAGCAGACATGAAAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR CCA 90 bp CTGCTGCACTGGTGTGGTGAGTTCTCCAGTCGGTCGTTTTCTACCTCAGGAAGGAGCGTATCCACAGTCTaGAGCCGGACACCACCTACA +
Preference number: 4 (lower is better)
Translates to: LLHWCGEFSSRSFSTSGRSVSTV*SRTPPT
Trigger: TGTAGGTGGTGTCCGGCTCCAGACTGTGGATACGCT...CCTTCCTGAGGTAGAAAACGACCGACTGGAGAACTCACCACACCAGTGCAGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
CDS-3UTR TCA 90 bp TCGCACATGGTTCAACCAGCTCCCAACACGGTTGTTCAGTGGTTCTTACTCTGCCGATTACAGACAGGGTaGCACCGCCTGCTATGGCCA +
Preference number: 4 (lower is better)
Translates to: SHMVQPAPNTVVQWFLLCRLQTG*HRLLWP
Trigger: TGGCCATAGCAGGCGGTGTCACCCTGTCTGTAATCG...GCAGAGTAAGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCATGTGCGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR GCA 90 bp TGGTGCCATGCTCGTCTGCAGCATGGCTGGGCTGTGGGACATCTGAACAGGAAGCAGGTCTGGTTTGGATaGCAGATCTGTTTACAGTGG +
Preference number: 4 (lower is better)
Translates to: WCHARLQHGWAVGHLNRKQVWFG*QICLQW
Trigger: CCACTGTAAACAGATCTGGCATCCAAACCAGACCTG...CTTCCTGTTCAGATGTCCCACAGCCCAGCCATGCTGCAGACGAGCATGGCACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
CDS-3UTR CCA 90 bp GCTGTGTGGGAAGTCAATAGTGCAGGCAGTATTTTGGCCAACTTCTGCTCGTGTCGTCTGCAGCATGGCTaGGCTGTGGGACATCTGAAC +
Preference number: 4 (lower is better)
Translates to: AVWEVNSAGSILANFCSCRLQHG*AVGHLN
Trigger: GTTCAGATGTCCCACAGCCCAGCCATGCTGCAGACG...ACACGAGCAGAAGTTGGCCAAAATACTGCCTGCACTATTGACTTCCCACACAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR CCA 90 bp TGGGAAGTCAATAGTGCAGGCAGTATTTTGGCCAACTTCTGCTCGTGTCAGCTGTGCTCGTCTGCAGCATaGCTGGGCTGTGGGACATCT +
Preference number: 4 (lower is better)
Translates to: WEVNSAGSILANFCSCQLCSSAA*LGCGTS
Trigger: AGATGTCCCACAGCCCAGCCATGCTGCAGACGAGCA...CAGCTGACACGAGCAGAAGTTGGCCAAAATACTGCCTGCACTATTGACTTCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR TCA 90 bp CTGCTGCACTGGTGTGGTGAGTTCTCCAGTCGGTCGTTTTCTACCTCAGGAAGGCATCCACTCCACCATTaGGCTCCCTTGATTTTCGTT +
Preference number: 4 (lower is better)
Translates to: LLHWCGEFSSRSFSTSGRHPLHH*APLIFV
Trigger: AACGAAAATCAAGGGAGCTCAATGGTGGAGTGGATG...CCTTCCTGAGGTAGAAAACGACCGACTGGAGAACTCACCACACCAGTGCAGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
CDS-3UTR TCA 90 bp TTAACAGTCGCACATGGTTCAACCAGCTCCCAACACGGTTGTTCAGTGGTTCTTTGGCAATGCCAGCTATaGGAGCAATCCCTACGGGAG +
Preference number: 4 (lower is better)
Translates to: LTVAHGSTSSQHGCSVVLWQCQL*EQSLRE
Trigger: CTCCCGTAGGGATTGCTCTCATAGCTGGCATTGCCA...AAGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCATGTGCGACTGTTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR GCA 90 bp ACGAGGCTCATAAAACCCAGTCTCTCCCAAAGGCACCAAGAATCAAAGGGCACTCCTACAGTCAGGATCTaGAACAAGCCACCGTCGAAG +
Preference number: 4 (lower is better)
Translates to: TRLIKPSLSQRHQESKGTPTVRI*NKPPSK
Trigger: CTTCGACGGTGGCTTGTTGCAGATCCTGACTGTAGG...AGTGCCCTTTGATTCTTGGTGCCTTTGGGAGAGACTGGGTTTTATGAGCCTCGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR GCA 90 bp GCCACCATCTTGCTCAAGTGTCTAAGTATCCAAATGGTTACCAATGGGCTGCATCACTTGCACTCAAACTaGCAGTCAGGCCGCCGACAC +
Preference number: 4 (lower is better)
Translates to: ATILLKCLSIQMVTNGLHHLHSN*QSGRRH
Trigger: GTGTCGGCGGCCTGACTGGCAGTTTGAGTGCAAGTG...ATGCAGCCCATTGGTAACCATTTGGATACTTAGACACTTGAGCAAGATGGTGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR GCA 90 bp GTCGCACATGGTTCAACCAGCTCCCAACACGGTTGTTCAGTGGTTCTTACTCTGCATGTGGCTTCCACTTaGACTCAAACTGCCAGTCAG +
Preference number: 4 (lower is better)
Translates to: VAHGSTSSQHGCSVVLTLHVAST*TQTASQ
Trigger: CTGACTGGCAGTTTGAGTGCAAGTGGAAGCCACATG...CAGAGTAAGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCATGTGCGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR CCA 90 bp TGGTGCCATGCTCGTCTGCAGCATGGCTGGGCTGTGGGACATCTGAACAGGAAGTTAGTTTTGGACAGCTaGCACATCCAAATGCTATCA +
Preference number: 4 (lower is better)
Translates to: WCHARLQHGWAVGHLNRKLVLDS*HIQMLS
Trigger: TGATAGCATTTGGATGTGCCAGCTGTCCAAAACTAA...CTTCCTGTTCAGATGTCCCACAGCCCAGCCATGCTGCAGACGAGCATGGCACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
CDS-3UTR CCA 90 bp CTTAACAGTCGCACATGGTTCAACCAGCTCCCAACACGGTTGTTCAGTGGTTCTAACAGGAAGCAGCTTTaGAAAGCAGAGCGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: LNSRTWFNQLPTRLFSGSNRKQL*KAERCC
Trigger: GCAGCAGCGCTCTGCTTTCCAAAGCTGCTTCCTGTT...AGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCATGTGCGACTGTTAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR TCA 90 bp TACTCTGCAGCATTCACGGGCCTAAATTTCAGTCTGGACAGCAACTTTCAGGTCGTTTGGGTGCCTTTTTaGCAGAAGGCAAGCTCACGG +
Preference number: 4 (lower is better)
Translates to: YSAAFTGLNFSLDSNFQVVWVPF*QKASSR
Trigger: CCGTGAGCTTGCCTTCTGTCAAAAAGGCACCCAAAC...GACCTGAAAGTTGCTGTCCAGACTGAAATTTAGGCCCGTGAATGCTGCAGAGTA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
CDS-3UTR TCA 90 bp CATCTGAACAGGAAGCAGCTTTGGAAAGCAGAGCGCTGCTGCACTGGTGTGGTGACAGCACATGTCATATaGTTGCAACTCCCATCATTC +
Preference number: 4 (lower is better)
Translates to: HLNRKQLWKAERCCTGVVTAHVI*LQLPSF
Trigger: GAATGATGGGAGTTGCAATCATATGACATGTGCTGT...CACCACACCAGTGCAGCAGCGCTCTGCTTTCCAAAGCTGCTTCCTGTTCAGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
CDS-3UTR TCA 90 bp AACTCACTTGAGTTCGTGCTTTGTTGCTCTAACAACTGTGCATCCATGTCCTCTCGATTACAGACAGGGTaGCACCGCCTGCTATGGCCA +
Preference number: 4 (lower is better)
Translates to: NSLEFVLCCSNNCASMSSRLQTG*HRLLWP
Trigger: TGGCCATAGCAGGCGGTGTCACCCTGTCTGTAATCG...AGAGGACATGGATGCACAGTTGTTAGAGCAACAAAGCACGAACTCAAGTGAGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
CDS-3UTR GCA 90 bp GCTGTGTGGGAAGTCAATAGTGCAGGCAGTATTTTGGCCAACTTCTGCTCGTGTCACTGTCATCCACACTaGTGCTTCCACTGTTGTGTC +
Preference number: 4 (lower is better)
Translates to: AVWEVNSAGSILANFCSCHCHPH*CFHCCV
Trigger: GACACAACAGTGGAAGCAGCAGTGTGGATGACAGTG...ACACGAGCAGAAGTTGGCCAAAATACTGCCTGCACTATTGACTTCCCACACAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR GCA 90 bp CTTAACAGTCGCACATGGTTCAACCAGCTCCCAACACGGTTGTTCAGTGGTTCTCCACTTGCACTTCCATaGTGTTCCCTTCTCTATGGC +
Preference number: 4 (lower is better)
Translates to: LNSRTWFNQLPTRLFSGSPLALP*CSLLYG
Trigger: GCCATAGAGAAGGGAACAGCATGGAAGTGCAAGTGG...AGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCATGTGCGACTGTTAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
CDS-3UTR TCA 90 bp TTTTCTACCTCAGGAAGGGTGTTCACAGCTGTGAAGCGGGCGTGGCAATCACTGATCAAGCGAATGTCATaGGGATTAAACCGTTCAGTG +
Preference number: 4 (lower is better)
Translates to: FSTSGRVFTAVKRAWQSLIKRMS*GLNRSV
Trigger: CACTGAACGGTTTAATCCTCATGACATTCGCTTGAT...CAGTGATTGCCACGCCCGCTTCACAGCTGTGAACACCCTTCCTGAGGTAGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
CDS-3UTR TCA 90 bp TTAACAGTCGCACATGGTTCAACCAGCTCCCAACACGGTTGTTCAGTGGTTCTTCGCCTCAAACTCACTTaGGTTCGTGCTTTGTTGCTC +
Preference number: 4 (lower is better)
Translates to: LTVAHGSTSSQHGCSVVLRLKLT*VRALLL
Trigger: GAGCAACAAAGCACGAACTCAAGTGAGTTTGAGGCG...AAGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCATGTGCGACTGTTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR TCA 90 bp AAAGAGCTGGCACTAGTGTTCTCTAAGCAGATTAATGGATGCAGCGAGGAAAACGGGCTGTGGGACATCTaGACAGGAAGCAGCTTTGGA +
Preference number: 4 (lower is better)
Translates to: KELALVFSKQINGCSEENGLWDI*TGSSFG
Trigger: TCCAAAGCTGCTTCCTGTTCAGATGTCCCACAGCCC...GTTTTCCTCGCTGCATCCATTAATCTGCTTAGAGAACACTAGTGCCAGCTCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR GCA 90 bp TCGCACATGGTTCAACCAGCTCCCAACACGGTTGTTCAGTGGTTCTTACTCTGCCCTTCTCTGTTTGGGTaGCTTTTTGACAGAAGGCAA +
Preference number: 4 (lower is better)
Translates to: SHMVQPAPNTVVQWFLLCPSLFG*LFDRRQ
Trigger: TTGCCTTCTGTCAAAAAGGCACCCAAACAGAGAAGG...GCAGAGTAAGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCATGTGCGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR GCA 90 bp CTTAACAGTCGCACATGGTTCAACCAGCTCCCAACACGGTTGTTCAGTGGTTCTCAGGTCTGGTTTGGATaGCAGATCTGTTTACAGTGG +
Preference number: 4 (lower is better)
Translates to: LNSRTWFNQLPTRLFSGSQVWFG*QICLQW
Trigger: CCACTGTAAACAGATCTGGCATCCAAACCAGACCTG...AGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCATGTGCGACTGTTAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR GCA 90 bp CTTAACAGTCGCACATGGTTCAACCAGCTCCCAACACGGTTGTTCAGTGGTTCTCCTATGCTAGGGTTGTaGCTTGCTTCTGCTACTGAT +
Preference number: 4 (lower is better)
Translates to: LNSRTWFNQLPTRLFSGSPMLGL*LASATD
Trigger: ATCAGTAGCAGAAGCAAGGCACAACCCTAGCATAGG...AGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCATGTGCGACTGTTAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR GCA 90 bp TTAACAGTCGCACATGGTTCAACCAGCTCCCAACACGGTTGTTCAGTGGTTCTTTGTCATCCACACTGCTaGTTCCACTGTTGTGTCGGA +
Preference number: 4 (lower is better)
Translates to: LTVAHGSTSSQHGCSVVLCHPHC*FHCCVG
Trigger: TCCGACACAACAGTGGAAGCAGCAGTGTGGATGACA...AAGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCATGTGCGACTGTTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR GCA 90 bp TACTCTGCAGCATTCACGGGCCTAAATTTCAGTCTGGACAGCAACTTTCAGGTCTGTCATCCACACTGCTaGTTCCACTGTTGTGTCGGA +
Preference number: 4 (lower is better)
Translates to: YSAAFTGLNFSLDSNFQVCHPHC*FHCCVG
Trigger: TCCGACACAACAGTGGAAGCAGCAGTGTGGATGACA...GACCTGAAAGTTGCTGTCCAGACTGAAATTTAGGCCCGTGAATGCTGCAGAGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
CDS-3UTR GCA 90 bp GTCGCACATGGTTCAACCAGCTCCCAACACGGTTGTTCAGTGGTTCTTACTCTGGAGTTCGTGCTTTGTTaGTCTAACAACTGTGCATCC +
Preference number: 4 (lower is better)
Translates to: VAHGSTSSQHGCSVVLTLEFVLC*SNNCAS
Trigger: GGATGCACAGTTGTTAGAGCAACAAAGCACGAACTC...CAGAGTAAGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCATGTGCGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR GCA 90 bp GTCGCACATGGTTCAACCAGCTCCCAACACGGTTGTTCAGTGGTTCTTACTCTGTACAGGACGTTCTCATaGTTTCTAAGTCTGAGCAGC +
Preference number: 4 (lower is better)
Translates to: VAHGSTSSQHGCSVVLTLYRTFS*FLSLSS
Trigger: GCTGCTCAGACTTAGAAAGCATGAGAACGTCCTGTA...CAGAGTAAGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCATGTGCGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR GCA 90 bp GTCGCACATGGTTCAACCAGCTCCCAACACGGTTGTTCAGTGGTTCTTACTCTGAGGTCTGCTGTCTGGTaGGAGTGGTTATTATTTGTC +
Preference number: 4 (lower is better)
Translates to: VAHGSTSSQHGCSVVLTLRSAVW*EWLLFV
Trigger: GACAAATAATAACCACTCGCACCAGACAGCAGACCT...CAGAGTAAGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCATGTGCGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR CCA 90 bp GTCGCACATGGTTCAACCAGCTCCCAACACGGTTGTTCAGTGGTTCTTACTCTGGCTGTCTGGTGCGAGTaGTTATTATTTGTCTCTCTC +
Preference number: 4 (lower is better)
Translates to: VAHGSTSSQHGCSVVLTLAVWCE*LLFVSL
Trigger: GAGAGAGACAAATAATAACCACTCGCACCAGACAGC...CAGAGTAAGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCATGTGCGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR TCA 90 bp CTTAACAGTCGCACATGGTTCAACCAGCTCCCAACACGGTTGTTCAGTGGTTCTGTACTTCCAACCTGTTaGAACAGTTTACCATGGCAC +
Preference number: 4 (lower is better)
Translates to: LNSRTWFNQLPTRLFSGSVLPTC*NSLPWH
Trigger: GTGCCATGGTAAACTGTTTCAACAGGTTGGAAGTAC...AGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCATGTGCGACTGTTAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR TCA 90 bp GTCGCACATGGTTCAACCAGCTCCCAACACGGTTGTTCAGTGGTTCTTACTCTGCCTCTCTGGTCTCATTaGTCTTCATGTTACCCTTTT +
Preference number: 4 (lower is better)
Translates to: VAHGSTSSQHGCSVVLTLPLWSH*SSCYPF
Trigger: AAAAGGGTAACATGAAGATCAATGAGACCAGAGAGG...CAGAGTAAGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCATGTGCGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR GCA 90 bp CTGCTGCACTGGTGTGGTGAGTTCTCCAGTCGGTCGTTTTCTACCTCAGGAAGGAATCTGTCTTTAGAATaGCGTAAAAGGCACAAAGGA +
Preference number: 4 (lower is better)
Translates to: LLHWCGEFSSRSFSTSGRNLSLE*RKRHKG
Trigger: TCCTTTGTGCCTTTTACGGCATTCTAAAGACAGATT...CCTTCCTGAGGTAGAAAACGACCGACTGGAGAACTCACCACACCAGTGCAGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
CDS-3UTR GCA 90 bp TACTCTGCAGCATTCACGGGCCTAAATTTCAGTCTGGACAGCAACTTTCAGGTCGCTGGCACATCCAAATaGTATCACAGCGTATCCACA +
Preference number: 4 (lower is better)
Translates to: YSAAFTGLNFSLDSNFQVAGTSK*YHSVST
Trigger: TGTGGATACGCTGTGATAGCATTTGGATGTGCCAGC...GACCTGAAAGTTGCTGTCCAGACTGAAATTTAGGCCCGTGAATGCTGCAGAGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
CDS-3UTR CCA 90 bp TGGGAAGTCAATAGTGCAGGCAGTATTTTGGCCAACTTCTGCTCGTGTCAGCTGAGCACATCGTGGACATaGCTTTATATCATCAGCTGC +
Preference number: 4 (lower is better)
Translates to: WEVNSAGSILANFCSCQLSTSWT*LYIISC
Trigger: GCAGCTGATGATATAAAGCCATGTCCACGATGTGCT...CAGCTGACACGAGCAGAAGTTGGCCAAAATACTGCCTGCACTATTGACTTCCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR CCA 90 bp CTTAACAGTCGCACATGGTTCAACCAGCTCCCAACACGGTTGTTCAGTGGTTCTTCGGCAGAGAGAAATTaGGACCACACCATAGACATA +
Preference number: 4 (lower is better)
Translates to: LNSRTWFNQLPTRLFSGSSAERN*DHTIDI
Trigger: TATGTCTATGGTGTGGTCCCAATTTCTCTCTGCCGA...AGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCATGTGCGACTGTTAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR TCA 90 bp TACTCTGCAGCATTCACGGGCCTAAATTTCAGTCTGGACAGCAACTTTCAGGTCACCATTGAGCTCCCTTaGTTTTCGTTTGCTGTCCTT +
Preference number: 4 (lower is better)
Translates to: YSAAFTGLNFSLDSNFQVTIELP*FSFAVL
Trigger: AAGGACAGCAAACGAAAATCAAGGGAGCTCAATGGT...GACCTGAAAGTTGCTGTCCAGACTGAAATTTAGGCCCGTGAATGCTGCAGAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
CDS-3UTR TCA 90 bp CTTAACAGTCGCACATGGTTCAACCAGCTCCCAACACGGTTGTTCAGTGGTTCTGAACTTGAATGGCTTTaGCTCAATATCCACTTGCAC +
Preference number: 4 (lower is better)
Translates to: LNSRTWFNQLPTRLFSGSELEWL*LNIHLH
Trigger: GTGCAAGTGGATATTGAGTCAAAGCCATTCAAGTTC...AGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCATGTGCGACTGTTAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR GCA 90 bp TCGCACATGGTTCAACCAGCTCCCAACACGGTTGTTCAGTGGTTCTTACTCTGCTATACTCTCAATACTTaGAATTCCATCCACTCCACC +
Preference number: 4 (lower is better)
Translates to: SHMVQPAPNTVVQWFLLCYTLNT*NSIHST
Trigger: GGTGGAGTGGATGGAATTGCAAGTATTGAGAGTATA...GCAGAGTAAGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCATGTGCGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR GCA 90 bp TACTCTGCAGCATTCACGGGCCTAAATTTCAGTCTGGACAGCAACTTTCAGGTCTATATCATCAGCTGCTaGTCCAGATTCCTGGCTGTA +
Preference number: 4 (lower is better)
Translates to: YSAAFTGLNFSLDSNFQVYIISC*SRFLAV
Trigger: TACAGCCAGGAATCTGGAGCAGCAGCTGATGATATA...GACCTGAAAGTTGCTGTCCAGACTGAAATTTAGGCCCGTGAATGCTGCAGAGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
CDS-3UTR GCA 90 bp TGTTGCTCTAACAACTGTGCATCCATGTCCTCTCTGGTCTCATTGATCTTCATGCACTGTCATCCACACTaGTGCTTCCACTGTTGTGTC +
Preference number: 4 (lower is better)
Translates to: CCSNNCASMSSLVSLIFMHCHPH*CFHCCV
Trigger: GACACAACAGTGGAAGCAGCAGTGTGGATGACAGTG...CATGAAGATCAATGAGACCAGAGAGGACATGGATGCACAGTTGTTAGAGCAACA
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
CDS-3UTR GCA 90 bp AAAGAGCTGGCACTAGTGTTCTCTAAGCAGATTAATGGATGCAGCGAGGAAAACAGCAACTTTCAGGTCTaGTGTCTGGTGCGAGTGGTT +
Preference number: 4 (lower is better)
Translates to: KELALVFSKQINGCSEENSNFQV*CLVRVV
Trigger: AACCACTCGCACCAGACAGCAGACCTGAAAGTTGCT...GTTTTCCTCGCTGCATCCATTAATCTGCTTAGAGAACACTAGTGCCAGCTCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR CCA 90 bp GAAACAAAGCCACACGTAGACCTTTTATATAAGCTTGGTACAAGCTCTGCATTGAGCGTATCCACAGTCTaGAGCCGGACACCACCTACA +
Preference number: 4 (lower is better)
Translates to: ETKPHVDLLYKLGTSSALSVSTV*SRTPPT
Trigger: TGTAGGTGGTGTCCGGCTCCAGACTGTGGATACGCT...CAATGCAGAGCTTGTACCAAGCTTATATAAAAGGTCTACGTGTGGCTTTGTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR CCA 90 bp TCGCACATGGTTCAACCAGCTCCCAACACGGTTGTTCAGTGGTTCTTACTCTGCTTAGTTTTGGACAGCTaGCACATCCAAATGCTATCA +
Preference number: 4 (lower is better)
Translates to: SHMVQPAPNTVVQWFLLCLVLDS*HIQMLS
Trigger: TGATAGCATTTGGATGTGCCAGCTGTCCAAAACTAA...GCAGAGTAAGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCATGTGCGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR CCA 90 bp ACGAGGCTCATAAAACCCAGTCTCTCCCAAAGGCACCAAGAATCAAAGGGCACTATCACAGGTCTGGTTTaGATGCCAGATCTGTTTACA +
Preference number: 4 (lower is better)
Translates to: TRLIKPSLSQRHQESKGTITGLV*MPDLFT
Trigger: TGTAAACAGATCTGGCATCCAAACCAGACCTGTGAT...AGTGCCCTTTGATTCTTGGTGCCTTTGGGAGAGACTGGGTTTTATGAGCCTCGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR CCA 90 bp TACTCTGCAGCATTCACGGGCCTAAATTTCAGTCTGGACAGCAACTTTCAGGTCCTTAAGCGTAAACTTTaGGCTCTTTCCTGTCGAGCA +
Preference number: 4 (lower is better)
Translates to: YSAAFTGLNFSLDSNFQVLKRKL*ALSCRA
Trigger: TGCTCGACAGGAAAGAGCCCAAAGTTTACGCTTAAG...GACCTGAAAGTTGCTGTCCAGACTGAAATTTAGGCCCGTGAATGCTGCAGAGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
CDS-3UTR CCA 90 bp TTAACAGTCGCACATGGTTCAACCAGCTCCCAACACGGTTGTTCAGTGGTTCTTTCGGCAGAGAGAAATTaGGACCACACCATAGACATA +
Preference number: 4 (lower is better)
Translates to: LTVAHGSTSSQHGCSVVLSAERN*DHTIDI
Trigger: TATGTCTATGGTGTGGTCCCAATTTCTCTCTGCCGA...AAGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCATGTGCGACTGTTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR TCA 90 bp TTAACAGTCGCACATGGTTCAACCAGCTCCCAACACGGTTGTTCAGTGGTTCTTACAGCACATGTCATATaGTTGCAACTCCCATCATTC +
Preference number: 4 (lower is better)
Translates to: LTVAHGSTSSQHGCSVVLTAHVI*LQLPSF
Trigger: GAATGATGGGAGTTGCAATCATATGACATGTGCTGT...AAGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCATGTGCGACTGTTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR TCA 90 bp TACCAAAAGAAAATGCTCAGTAGCACCATAATGGTAACACTTAGAGGAAACACCTGGCAATGCCAGCTATaGGAGCAATCCCTACGGGAG +
Preference number: 4 (lower is better)
Translates to: YQKKMLSSTIMVTLRGNTWQCQL*EQSLRE
Trigger: CTCCCGTAGGGATTGCTCTCATAGCTGGCATTGCCA...GGTGTTTCCTCTAAGTGTTACCATTATGGTGCTACTGAGCATTTTCTTTTGGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR TCA 90 bp GCCACCATCTTGCTCAAGTGTCTAAGTATCCAAATGGTTACCAATGGGCTGCATAGACATAAGCTAGCATaGTGGGAACACCAATGCCTA +
Preference number: 4 (lower is better)
Translates to: ATILLKCLSIQMVTNGLHRHKLA*WEHQCL
Trigger: TAGGCATTGGTGTTCCCATCATGCTAGCTTATGTCT...ATGCAGCCCATTGGTAACCATTTGGATACTTAGACACTTGAGCAAGATGGTGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR TCA 90 bp GAAACAAAGCCACACGTAGACCTTTTATATAAGCTTGGTACAAGCTCTGCATTGGAGGGATGTAGGAGTTaGGAATGGATCCCGCCATTG +
Preference number: 4 (lower is better)
Translates to: ETKPHVDLLYKLGTSSALEGCRS*EWIPPL
Trigger: CAATGGCGGGATCCATTCTCAACTCCTACATCCCTC...CAATGCAGAGCTTGTACCAAGCTTATATAAAAGGTCTACGTGTGGCTTTGTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR TCA 90 bp CTTAACAGTCGCACATGGTTCAACCAGCTCCCAACACGGTTGTTCAGTGGTTCTTGTTGTGTCGGAACTTaGATGGCTTTGACTCAATAT +
Preference number: 4 (lower is better)
Translates to: LNSRTWFNQLPTRLFSGSCCVGT*MALTQY
Trigger: ATATTGAGTCAAAGCCATTCAAGTTCCGACACAACA...AGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCATGTGCGACTGTTAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR GCA 90 bp GCCACCATCTTGCTCAAGTGTCTAAGTATCCAAATGGTTACCAATGGGCTGCATGACTCAATATCCACTTaGACTTCCATGCTGTTCCCT +
Preference number: 4 (lower is better)
Translates to: ATILLKCLSIQMVTNGLHDSIST*TSMLFP
Trigger: AGGGAACAGCATGGAAGTGCAAGTGGATATTGAGTC...ATGCAGCCCATTGGTAACCATTTGGATACTTAGACACTTGAGCAAGATGGTGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR CCA 90 bp TCGCACATGGTTCAACCAGCTCCCAACACGGTTGTTCAGTGGTTCTTACTCTGCACACAAGATCTATGGTaGCATGTCATTATATCAGGA +
Preference number: 4 (lower is better)
Translates to: SHMVQPAPNTVVQWFLLCTQDLW*HVIISG
Trigger: TCCTGATATAATGACATGCCACCATAGATCTTGTGT...GCAGAGTAAGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCATGTGCGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR TCA 90 bp GCCACCATCTTGCTCAAGTGTCTAAGTATCCAAATGGTTACCAATGGGCTGCATAAAGAGAGAGCCTATTaGAATCCTTCTCTGTTTGGG +
Preference number: 4 (lower is better)
Translates to: ATILLKCLSIQMVTNGLHKERAY*NPSLFG
Trigger: CCCAAACAGAGAAGGATTTCAATAGGCTCTCTCTTT...ATGCAGCCCATTGGTAACCATTTGGATACTTAGACACTTGAGCAAGATGGTGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR TCA 90 bp GCCACCATCTTGCTCAAGTGTCTAAGTATCCAAATGGTTACCAATGGGCTGCATATCAAGCGAATGTCATaGGGATTAAACCGTTCAGTG +
Preference number: 4 (lower is better)
Translates to: ATILLKCLSIQMVTNGLHIKRMS*GLNRSV
Trigger: CACTGAACGGTTTAATCCTCATGACATTCGCTTGAT...ATGCAGCCCATTGGTAACCATTTGGATACTTAGACACTTGAGCAAGATGGTGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR TCA 90 bp GAAACAAAGCCACACGTAGACCTTTTATATAAGCTTGGTACAAGCTCTGCATTGTGCCAGACTCTCCACTaGGACTACACCGTTCTTTCT +
Preference number: 4 (lower is better)
Translates to: ETKPHVDLLYKLGTSSALCQTLH*DYTVLS
Trigger: AGAAAGAACGGTGTAGTCTCAGTGGAGAGTCTGGCA...CAATGCAGAGCTTGTACCAAGCTTATATAAAAGGTCTACGTGTGGCTTTGTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR GCA 90 bp TGGGAAGTCAATAGTGCAGGCAGTATTTTGGCCAACTTCTGCTCGTGTCAGCTGAATCTGTCTTTAGAATaGCGTAAAAGGCACAAAGGA +
Preference number: 4 (lower is better)
Translates to: WEVNSAGSILANFCSCQLNLSLE*RKRHKG
Trigger: TCCTTTGTGCCTTTTACGGCATTCTAAAGACAGATT...CAGCTGACACGAGCAGAAGTTGGCCAAAATACTGCCTGCACTATTGACTTCCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR GCA 90 bp AAAGAGCTGGCACTAGTGTTCTCTAAGCAGATTAATGGATGCAGCGAGGAAAACGACTCAATATCCACTTaGACTTCCATGCTGTTCCCT +
Preference number: 4 (lower is better)
Translates to: KELALVFSKQINGCSEENDSIST*TSMLFP
Trigger: AGGGAACAGCATGGAAGTGCAAGTGGATATTGAGTC...GTTTTCCTCGCTGCATCCATTAATCTGCTTAGAGAACACTAGTGCCAGCTCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR CCA 90 bp GCTGTGTGGGAAGTCAATAGTGCAGGCAGTATTTTGGCCAACTTCTGCTCGTGTTCCACACAAGATCTATaGTGGCATGTCATTATATCA +
Preference number: 4 (lower is better)
Translates to: AVWEVNSAGSILANFCSCSTQDL*WHVIIS
Trigger: TGATATAATGACATGCCACCATAGATCTTGTGTGGA...ACACGAGCAGAAGTTGGCCAAAATACTGCCTGCACTATTGACTTCCCACACAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR CCA 90 bp AACTCACTTGAGTTCGTGCTTTGTTGCTCTAACAACTGTGCATCCATGTCCTCTAGCACATCGTGGACATaGCTTTATATCATCAGCTGC +
Preference number: 4 (lower is better)
Translates to: NSLEFVLCCSNNCASMSSSTSWT*LYIISC
Trigger: GCAGCTGATGATATAAAGCCATGTCCACGATGTGCT...AGAGGACATGGATGCACAGTTGTTAGAGCAACAAAGCACGAACTCAAGTGAGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
CDS-3UTR TCA 90 bp TTAACAGTCGCACATGGTTCAACCAGCTCCCAACACGGTTGTTCAGTGGTTCTTAATGCTCATCAGAATTaGGTCAGAGTCAATGTTCAT +
Preference number: 4 (lower is better)
Translates to: LTVAHGSTSSQHGCSVVLNAHQN*VRVNVH
Trigger: ATGAACATTGACTCTGACTCAATTCTGATGAGCATT...AAGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCATGTGCGACTGTTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR GCA 90 bp TACCAAAAGAAAATGCTCAGTAGCACCATAATGGTAACACTTAGAGGAAACACCAATGGATCCCGCCATTaGTTTGGTGCTGGCGTTATC +
Preference number: 4 (lower is better)
Translates to: YQKKMLSSTIMVTLRGNTNGSRH*FGAGVI
Trigger: GATAACGCCAGCACCAAAGCAATGGCGGGATCCATT...GGTGTTTCCTCTAAGTGTTACCATTATGGTGCTACTGAGCATTTTCTTTTGGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR GCA 90 bp TGGTTACCAATGGGCTGCATTAAGCTTGATATCCACATTGCATATGAAGAAATGCCACTTGCACTTCCATaGTGTTCCCTTCTCTGTCCA +
Preference number: 4 (lower is better)
Translates to: WLPMGCIKLDIHIAYEEMPLALP*CSLLCP
Trigger: TGGACAGAGAAGGGAACAGCATGGAAGTGCAAGTGG...CATTTCTTCATATGCAATGTGGATATCAAGCTTAATGCAGCCCATTGGTAACCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR TCA 90 bp ATTTCATGTCTGCTGTTCACACACTCATTACTGAACAAAATTGGAATGCAAACAGTTTGGGTGCCTTTTTaGCAGAAGGCAAGCTCACGG +
Preference number: 4 (lower is better)
Translates to: ISCLLFTHSLLNKIGMQTVWVPF*QKASSR
Trigger: CCGTGAGCTTGCCTTCTGTCAAAAAGGCACCCAAAC...TGTTTGCATTCCAATTTTGTTCAGTAATGAGTGTGTGAACAGCAGACATGAAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR TCA 90 bp GAAACAAAGCCACACGTAGACCTTTTATATAAGCTTGGTACAAGCTCTGCATTGACCATTGAGCTCCCTTaGTTTTCGTTTGCTGTCCTT +
Preference number: 4 (lower is better)
Translates to: ETKPHVDLLYKLGTSSALTIELP*FSFAVL
Trigger: AAGGACAGCAAACGAAAATCAAGGGAGCTCAATGGT...CAATGCAGAGCTTGTACCAAGCTTATATAAAAGGTCTACGTGTGGCTTTGTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR TCA 90 bp TACCAAAAGAAAATGCTCAGTAGCACCATAATGGTAACACTTAGAGGAAACACCCATCCACTCCACCATTaGGCTCCCTTGATTTTCGTT +
Preference number: 4 (lower is better)
Translates to: YQKKMLSSTIMVTLRGNTHPLHH*APLIFV
Trigger: AACGAAAATCAAGGGAGCTCAATGGTGGAGTGGATG...GGTGTTTCCTCTAAGTGTTACCATTATGGTGCTACTGAGCATTTTCTTTTGGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR TCA 90 bp AACTCACTTGAGTTCGTGCTTTGTTGCTCTAACAACTGTGCATCCATGTCCTCTTGTTGTGTCGGAACTTaGATGGCTTTGACTCAATAT +
Preference number: 4 (lower is better)
Translates to: NSLEFVLCCSNNCASMSSCCVGT*MALTQY
Trigger: ATATTGAGTCAAAGCCATTCAAGTTCCGACACAACA...AGAGGACATGGATGCACAGTTGTTAGAGCAACAAAGCACGAACTCAAGTGAGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
CDS-3UTR GCA 90 bp TACTCTGCAGCATTCACGGGCCTAAATTTCAGTCTGGACAGCAACTTTCAGGTCAACTCATGTCTAAAATaGTCATCAGAATTGAGTCAG +
Preference number: 4 (lower is better)
Translates to: YSAAFTGLNFSLDSNFQVNSCLK*SSELSQ
Trigger: CTGACTCAATTCTGATGAGCATTTTAGACATGAGTT...GACCTGAAAGTTGCTGTCCAGACTGAAATTTAGGCCCGTGAATGCTGCAGAGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
CDS-3UTR GCA 90 bp GTAATCTGCCACGTTCCATCCCTTAGTGGTTTCAATAAAATGTCACTAACCACTCCTTCTCTGTTTGGGTaGCTTTTTGACAGAAGGCAA +
Preference number: 4 (lower is better)
Translates to: VICHVPSLSGFNKMSLTTPSLFG*LFDRRQ
Trigger: TTGCCTTCTGTCAAAAAGGCACCCAAACAGAGAAGG...AGTGGTTAGTGACATTTTATTGAAACCACTAAGGGATGGAACGTGGCAGATTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR GCA 90 bp ATTTCATGTCTGCTGTTCACACACTCATTACTGAACAAAATTGGAATGCAAACACCTACAGTCAGGATCTaGAACAAGCCACCGTCGAAG +
Preference number: 4 (lower is better)
Translates to: ISCLLFTHSLLNKIGMQTPTVRI*NKPPSK
Trigger: CTTCGACGGTGGCTTGTTGCAGATCCTGACTGTAGG...TGTTTGCATTCCAATTTTGTTCAGTAATGAGTGTGTGAACAGCAGACATGAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR GCA 90 bp TGGTTACCAATGGGCTGCATTAAGCTTGATATCCACATTGCATATGAAGAAATGGCTGGCACATCCAAATaGTATCACAGCGTATCCACA +
Preference number: 4 (lower is better)
Translates to: WLPMGCIKLDIHIAYEEMAGTSK*YHSVST
Trigger: TGTGGATACGCTGTGATAGCATTTGGATGTGCCAGC...CATTTCTTCATATGCAATGTGGATATCAAGCTTAATGCAGCCCATTGGTAACCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR GCA 90 bp AAAGAGCTGGCACTAGTGTTCTCTAAGCAGATTAATGGATGCAGCGAGGAAAACTTCTTTCTGTACGTCTaGTTGTACTTCCAACCTGTT +
Preference number: 4 (lower is better)
Translates to: KELALVFSKQINGCSEENFFLYV*LYFQPV
Trigger: AACAGGTTGGAAGTACAAGCAGACGTACAGAAAGAA...GTTTTCCTCGCTGCATCCATTAATCTGCTTAGAGAACACTAGTGCCAGCTCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR GCA 90 bp AAAGAGCTGGCACTAGTGTTCTCTAAGCAGATTAATGGATGCAGCGAGGAAAACACTCACTTGAGTTCGTaGTTTGTTGCTCTAACAACT +
Preference number: 4 (lower is better)
Translates to: KELALVFSKQINGCSEENTHLSS*FVALTT
Trigger: AGTTGTTAGAGCAACAAAGCACGAACTCAAGTGAGT...GTTTTCCTCGCTGCATCCATTAATCTGCTTAGAGAACACTAGTGCCAGCTCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR CCA 90 bp GCCACCATCTTGCTCAAGTGTCTAAGTATCCAAATGGTTACCAATGGGCTGCATTCCACACAAGATCTATaGTGGCATGTCATTATATCA +
Preference number: 4 (lower is better)
Translates to: ATILLKCLSIQMVTNGLHSTQDL*WHVIIS
Trigger: TGATATAATGACATGCCACCATAGATCTTGTGTGGA...ATGCAGCCCATTGGTAACCATTTGGATACTTAGACACTTGAGCAAGATGGTGGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR CCA 90 bp GTAATCTGCCACGTTCCATCCCTTAGTGGTTTCAATAAAATGTCACTAACCACTCTTAAGCGTAAACTTTaGGCTCTTTCCTGTCGAGCA +
Preference number: 4 (lower is better)
Translates to: VICHVPSLSGFNKMSLTTLKRKL*ALSCRA
Trigger: TGCTCGACAGGAAAGAGCCCAAAGTTTACGCTTAAG...AGTGGTTAGTGACATTTTATTGAAACCACTAAGGGATGGAACGTGGCAGATTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR TCA 90 bp TGGTTACCAATGGGCTGCATTAAGCTTGATATCCACATTGCATATGAAGAAATGAGACATAAGCTAGCATaGTGGGAACACCAATGCCTA +
Preference number: 4 (lower is better)
Translates to: WLPMGCIKLDIHIAYEEMRHKLA*WEHQCL
Trigger: TAGGCATTGGTGTTCCCATCATGCTAGCTTATGTCT...CATTTCTTCATATGCAATGTGGATATCAAGCTTAATGCAGCCCATTGGTAACCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR GCA 90 bp TGGTTACCAATGGGCTGCATTAAGCTTGATATCCACATTGCATATGAAGAAATGCTTTATATCATCAGCTaGTGCTCCAGATTCCTGGCT +
Preference number: 4 (lower is better)
Translates to: WLPMGCIKLDIHIAYEEMLYIIS*CSRFLA
Trigger: AGCCAGGAATCTGGAGCAGCAGCTGATGATATAAAG...CATTTCTTCATATGCAATGTGGATATCAAGCTTAATGCAGCCCATTGGTAACCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR CCA 90 bp AAAGAGCTGGCACTAGTGTTCTCTAAGCAGATTAATGGATGCAGCGAGGAAAACACACAAGATCTATGGTaGCATGTCATTATATCAGGA +
Preference number: 4 (lower is better)
Translates to: KELALVFSKQINGCSEENTQDLW*HVIISG
Trigger: TCCTGATATAATGACATGCCACCATAGATCTTGTGT...GTTTTCCTCGCTGCATCCATTAATCTGCTTAGAGAACACTAGTGCCAGCTCTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR CCA 90 bp GAAACAAAGCCACACGTAGACCTTTTATATAAGCTTGGTACAAGCTCTGCATTGATCACAGGTCTGGTTTaGATGCCAGATCTGTTTACA +
Preference number: 4 (lower is better)
Translates to: ETKPHVDLLYKLGTSSALITGLV*MPDLFT
Trigger: TGTAAACAGATCTGGCATCCAAACCAGACCTGTGAT...CAATGCAGAGCTTGTACCAAGCTTATATAAAAGGTCTACGTGTGGCTTTGTTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR TCA 90 bp GAAACAAAGCCACACGTAGACCTTTTATATAAGCTTGGTACAAGCTCTGCATTGAATGCTCATCAGAATTaGGTCAGAGTCAATGTTCAT +
Preference number: 4 (lower is better)
Translates to: ETKPHVDLLYKLGTSSALNAHQN*VRVNVH
Trigger: ATGAACATTGACTCTGACTCAATTCTGATGAGCATT...CAATGCAGAGCTTGTACCAAGCTTATATAAAAGGTCTACGTGTGGCTTTGTTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR GCA 90 bp ATTTCATGTCTGCTGTTCACACACTCATTACTGAACAAAATTGGAATGCAAACATATATCATCAGCTGCTaGTCCAGATTCCTGGCTGTA +
Preference number: 4 (lower is better)
Translates to: ISCLLFTHSLLNKIGMQTYIISC*SRFLAV
Trigger: TACAGCCAGGAATCTGGAGCAGCAGCTGATGATATA...TGTTTGCATTCCAATTTTGTTCAGTAATGAGTGTGTGAACAGCAGACATGAAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR GCA 90 bp ATTTCATGTCTGCTGTTCACACACTCATTACTGAACAAAATTGGAATGCAAACACTTTATATCATCAGCTaGTGCTCCAGATTCCTGGCT +
Preference number: 4 (lower is better)
Translates to: ISCLLFTHSLLNKIGMQTLYIIS*CSRFLA
Trigger: AGCCAGGAATCTGGAGCAGCAGCTGATGATATAAAG...TGTTTGCATTCCAATTTTGTTCAGTAATGAGTGTGTGAACAGCAGACATGAAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR CCA 90 bp TACCAAAAGAAAATGCTCAGTAGCACCATAATGGTAACACTTAGAGGAAACACCCCGTTCAGTGCATTCTaGACAACTGATATTAACTCT +
Preference number: 4 (lower is better)
Translates to: YQKKMLSSTIMVTLRGNTPFSAF*TTDINS
Trigger: AGAGTTAATATCAGTTGTCCAGAATGCACTGAACGG...GGTGTTTCCTCTAAGTGTTACCATTATGGTGCTACTGAGCATTTTCTTTTGGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR CCA 90 bp ATTTCATGTCTGCTGTTCACACACTCATTACTGAACAAAATTGGAATGCAAACACCTATTCGATCCATGTaGCTTCCACTTGCACTCAAA +
Preference number: 4 (lower is better)
Translates to: ISCLLFTHSLLNKIGMQTPIRSM*LPLALK
Trigger: TTTGAGTGCAAGTGGAAGCCACATGGATCGAATAGG...TGTTTGCATTCCAATTTTGTTCAGTAATGAGTGTGTGAACAGCAGACATGAAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
3UTR CAA 72 bp TTTCTACTTCAGAGTTGTGCAAAAACTGCCACCATCTaGCTCAAGTGTCTAAGTATCCAAATGGTTACCAAT +
Preference number: 4 (lower is better)
Translates to: FLLQSCAKTATI*LKCLSIQMVTN
Trigger: ATTGGTAACCATTTGGATACTTAGACACTTGAGCAAGATGGTGGCAGTTTTTGCACAACTCTGAAGTAGAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR TCA 90 bp ATTTCATGTCTGCTGTTCACACACTCATTACTGAACAAAATTGGAATGCAAACAGAACTTGAATGGCTTTaGCTCAATATCCACTTGCAC +
Preference number: 4 (lower is better)
Translates to: ISCLLFTHSLLNKIGMQTELEWL*LNIHLH
Trigger: GTGCAAGTGGATATTGAGTCAAAGCCATTCAAGTTC...TGTTTGCATTCCAATTTTGTTCAGTAATGAGTGTGTGAACAGCAGACATGAAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR CCA 90 bp ATTTCATGTCTGCTGTTCACACACTCATTACTGAACAAAATTGGAATGCAAACAATTCAGAAAAATGACTaGAGTGGGAATCTGCTACAG +
Preference number: 4 (lower is better)
Translates to: ISCLLFTHSLLNKIGMQTIQKND*SGNLLQ
Trigger: CTGTAGCAGATTCCCACTCCAGTCATTTTTCTGAAT...TGTTTGCATTCCAATTTTGTTCAGTAATGAGTGTGTGAACAGCAGACATGAAAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR GCA 90 bp ATTTCATGTCTGCTGTTCACACACTCATTACTGAACAAAATTGGAATGCAAACAAACTCATGTCTAAAATaGTCATCAGAATTGAGTCAG +
Preference number: 4 (lower is better)
Translates to: ISCLLFTHSLLNKIGMQTNSCLK*SSELSQ
Trigger: CTGACTCAATTCTGATGAGCATTTTAGACATGAGTT...TGTTTGCATTCCAATTTTGTTCAGTAATGAGTGTGTGAACAGCAGACATGAAAT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS CCA 90 bp GCACTGGATTTACCTTCGGGCAAGCCACTGGACGCCCCGCCTGTGTaGCCTCGGGTAGCACCACTGTCATCCACACTGCTGCTTCCACTG +
Preference number: 5 (lower is better)
Translates to: ALDLPSGKPLDAPPV*PRVAPLSSTLLLPL
Trigger: CAGTGGAAGCAGCAGTGTGGATGACAGTGGTGCTACCCGAGGCCACACAGGCGGGGCGTCCAGTGGCTTGCCCGAAGGTAAATCCAGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS GCA 90 bp CTGCCAGTCAGGCCGCCGACACTTCCCTCTCCTATGCTAGGGTTGTaGCTTGCTTCTGCTACTGATGTTGTATCTATGGCTGCGTTAGTC +
Preference number: 5 (lower is better)
Translates to: LPVRPPTLPSPMLGL*LASATDVVSMAALV
Trigger: GACTAACGCAGCCATAGATACAACATCAGTAGCAGAAGCAAGGCACAACCCTAGCATAGGAGAGGGAAGTGTCGGCGGCCTGACTGGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR CAA 90 bp CTGCTGCACTGGTGTGGTGAGTTCTCCAGTCGGTCGTTTTCTACCTCAGGAAGGCCATCCACTCCACCATaGAGCTCCCTTGATTTTCGT +
Preference number: 5 (lower is better)
Translates to: LLHWCGEFSSRSFSTSGRPSTPP*SSLDFR
Trigger: ACGAAAATCAAGGGAGCTCAATGGTGGAGTGGATGG...CCTTCCTGAGGTAGAAAACGACCGACTGGAGAACTCACCACACCAGTGCAGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
CDS CCA 90 bp ACTCTGTTCCACAGCCTTCTCGCCCACAAGTTAGTTTTGGACAGCTaGCACATCCAAATGCTATCACAGCGTATCCACAGTCTGGAGCCG +
Preference number: 5 (lower is better)
Translates to: TLFHSLLAHKLVLDS*HIQMLSQRIHSLEP
Trigger: CGGCTCCAGACTGTGGATACGCTGTGATAGCATTTGGATGTGCCAGCTGTCCAAAACTAACTTGTGGGCGAGAAGGCTGTGGAACAGAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR CAA 90 bp CTTAACAGTCGCACATGGTTCAACCAGCTCCCAACACGGTTGTTCAGTGGTTCTCTCACTCCTTTCCCATaGCCCGCAGAGACACCACAA +
Preference number: 5 (lower is better)
Translates to: LNSRTWFNQLPTRLFSGSLTPFP*PAETPQ
Trigger: TTGTGGTGTCTCTGCGGGCAATGGGAAAGGAGTGAG...AGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCATGTGCGACTGTTAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS TCA 90 bp CTACAGTCACTGCAGCTACCACCGGAGACACGATTACAGACAGGGTaGCACCGCCTGCTATGGCCAGATTCCGCTTATGTTTTGAAACAT +
Preference number: 5 (lower is better)
Translates to: LQSLQLPPETRLQTG*HRLLWPDSAYVLKH
Trigger: ATGTTTCAAAACATAAGCGGAATCTGGCCATAGCAGGCGGTGTCACCCTGTCTGTAATCGTGTCTCCGGTGGTAGCTGCAGTGACTGTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR CAA 90 bp CTTAACAGTCGCACATGGTTCAACCAGCTCCCAACACGGTTGTTCAGTGGTTCTCTGCTGCTTCCACTGTaGTGTCGGAACTTGAATGGC +
Preference number: 5 (lower is better)
Translates to: LNSRTWFNQLPTRLFSGSLLLPL*CRNLNG
Trigger: GCCATTCAAGTTCCGACACAACAGTGGAAGCAGCAG...AGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCATGTGCGACTGTTAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR CAA 90 bp GTCGCACATGGTTCAACCAGCTCCCAACACGGTTGTTCAGTGGTTCTTACTCTGTCCCTTGATTTTCGTTaGCTGTCCTTCTTCCTCCGA +
Preference number: 5 (lower is better)
Translates to: VAHGSTSSQHGCSVVLTLSLDFR*LSFFLR
Trigger: TCGGAGGAAGAAGGACAGCAAACGAAAATCAAGGGA...CAGAGTAAGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCATGTGCGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR CAA 90 bp CATCTGAACAGGAAGCAGCTTTGGAAAGCAGAGCGCTGCTGCACTGGTGTGGTGGTATACTCTCAATACTaGCAATTCCATCCACTCCAC +
Preference number: 5 (lower is better)
Translates to: HLNRKQLWKAERCCTGVVVYSQY*QFHPLH
Trigger: GTGGAGTGGATGGAATTGCAAGTATTGAGAGTATAC...CACCACACCAGTGCAGCAGCGCTCTGCTTTCCAAAGCTGCTTCCTGTTCAGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
CDS-3UTR CAA 90 bp GTCGCACATGGTTCAACCAGCTCCCAACACGGTTGTTCAGTGGTTCTTACTCTGCATCACAGGTCTGGTTaGGATGCCAGATCTGTTTAC +
Preference number: 5 (lower is better)
Translates to: VAHGSTSSQHGCSVVLTLHHRSG*DARSVY
Trigger: GTAAACAGATCTGGCATCCAAACCAGACCTGTGATG...CAGAGTAAGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCATGTGCGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR CAA 90 bp TGGTGCCATGCTCGTCTGCAGCATGGCTGGGCTGTGGGACATCTGAACAGGAAGGATTCCGCTTATGTTTaGAAACATCTTTGCCTTCAT +
Preference number: 5 (lower is better)
Translates to: WCHARLQHGWAVGHLNRKDSAYV*KHLCLH
Trigger: ATGAAGGCAAAGATGTTTCAAAACATAAGCGGAATC...CTTCCTGTTCAGATGTCCCACAGCCCAGCCATGCTGCAGACGAGCATGGCACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
CDS-3UTR CAA 90 bp GCCACCATCTTGCTCAAGTGTCTAAGTATCCAAATGGTTACCAATGGGCTGCATCCTCCTGTTGCTTCCTaGGACCACTTGGTAGCACTG +
Preference number: 5 (lower is better)
Translates to: ATILLKCLSIQMVTNGLHPPVAS*DHLVAL
Trigger: CAGTGCTACCAAGTGGTCCAAGGAAGCAACAGGAGG...ATGCAGCCCATTGGTAACCATTTGGATACTTAGACACTTGAGCAAGATGGTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS TCA 90 bp AGACAGGGTGACACCGCCTGCTATGGCCAGATTCCGCTTATGTTTTaGAACATCTTTGCCTTCATAGCGATTATGAATCTTGCGGCCCAC +
Preference number: 5 (lower is better)
Translates to: RQGDTACYGQIPLMF*NIFAFIAIMNLAAH
Trigger: GTGGGCCGCAAGATTCATAATCGCTATGAAGGCAAAGATGTTTCAAAACATAAGCGGAATCTGGCCATAGCAGGCGGTGTCACCCTGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS TCA 90 bp CACCACTGTCATCCACACTGCTGCTTCCACTGTTGTGTCGGAACTTaGATGGCTTTGACTCAATATCCACTTGCACTTCCATGCTGTTCC +
Preference number: 5 (lower is better)
Translates to: HHCHPHCCFHCCVGT*MALTQYPLALPCCS
Trigger: GGAACAGCATGGAAGTGCAAGTGGATATTGAGTCAAAGCCATTCAAGTTCCGACACAACAGTGGAAGCAGCAGTGTGGATGACAGTGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR CAA 90 bp TTTTCTACCTCAGGAAGGGTGTTCACAGCTGTGAAGCGGGCGTGGCAATCACTGGAAATCCTTCTCTGTTaGGGTGCCTTTTTGACAGAA +
Preference number: 5 (lower is better)
Translates to: FSTSGRVFTAVKRAWQSLEILLC*GAFLTE
Trigger: TTCTGTCAAAAAGGCACCCAAACAGAGAAGGATTTC...CAGTGATTGCCACGCCCGCTTCACAGCTGTGAACACCCTTCCTGAGGTAGAAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
CDS TCA 90 bp ATCCACACTGCTGCTTCCACTGTTGTGTCGGAACTTGAATGGCTTTaGCTCAATATCCACTTGCACTTCCATGCTGTTCCCTTCTCTGTC +
Preference number: 5 (lower is better)
Translates to: IHTAASTVVSELEWL*LNIHLHFHAVPFSV
Trigger: GACAGAGAAGGGAACAGCATGGAAGTGCAAGTGGATATTGAGTCAAAGCCATTCAAGTTCCGACACAACAGTGGAAGCAGCAGTGTGGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS GCA 90 bp CACCGCCTGCTATGGCCAGATTCCGCTTATGTTTTGAAACATCTTTaGCTTCATAGCGATTATGAATCTTGCGGCCCACGTACACAGGAA +
Preference number: 5 (lower is better)
Translates to: HRLLWPDSAYVLKHL*LHSDYESCGPRTQE
Trigger: TTCCTGTGTACGTGGGCCGCAAGATTCATAATCGCTATGAAGGCAAAGATGTTTCAAAACATAAGCGGAATCTGGCCATAGCAGGCGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS GCA 90 bp TTATGTCATTCTCATCATCAAACTCAATCCTCACTCCTTTCCCATTaGCCGCAGAGACACCACAACCCCCACTTCGGCAGAGAGAAATTG +
Preference number: 5 (lower is better)
Translates to: LCHSHHQTQSSLLSH*PQRHHNPHFGREKL
Trigger: CAATTTCTCTCTGCCGAAGTGGGGGTTGTGGTGTCTCTGCGGGCAATGGGAAAGGAGTGAGGATTGAGTTTGATGATGAGAATGACATAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR CAA 90 bp CATCTGAACAGGAAGCAGCTTTGGAAAGCAGAGCGCTGCTGCACTGGTGTGGTGATGGAAGTCAATCCATaGTCAGAAGAGGTATTTGTA +
Preference number: 5 (lower is better)
Translates to: HLNRKQLWKAERCCTGVVMEVNP*SEEVFV
Trigger: TACAAATACCTCTTCTGACAATGGATTGACTTCCAT...CACCACACCAGTGCAGCAGCGCTCTGCTTTCCAAAGCTGCTTCCTGTTCAGATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
CDS-3UTR CAA 90 bp TCGCACATGGTTCAACCAGCTCCCAACACGGTTGTTCAGTGGTTCTTACTCTGCTGTACTTCCAACCTGTaGAAACAGTTTACCATGGCA +
Preference number: 5 (lower is better)
Translates to: SHMVQPAPNTVVQWFLLCCTSNL*KQFTMA
Trigger: TGCCATGGTAAACTGTTTCAACAGGTTGGAAGTACA...GCAGAGTAAGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCATGTGCGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR CAA 90 bp TCGCACATGGTTCAACCAGCTCCCAACACGGTTGTTCAGTGGTTCTTACTCTGCTTTCTGTACGTCTGCTaGTACTTCCAACCTGTTGAA +
Preference number: 5 (lower is better)
Translates to: SHMVQPAPNTVVQWFLLCFLYVC*YFQPVE
Trigger: TTCAACAGGTTGGAAGTACAAGCAGACGTACAGAAA...GCAGAGTAAGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCATGTGCGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS TCA 90 bp ATCCACACTGCTGCTTCCACTGTTGTGTCGGAACTTGAATGGCTTTaGCTCAATATCCACTTGCACTTCCATGCTGTTCCCTTCTCTATG +
Preference number: 5 (lower is better)
Translates to: IHTAASTVVSELEWL*LNIHLHFHAVPFSM
Trigger: CATAGAGAAGGGAACAGCATGGAAGTGCAAGTGGATATTGAGTCAAAGCCATTCAAGTTCCGACACAACAGTGGAAGCAGCAGTGTGGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
CDS-3UTR CAA 90 bp ACGAGGCTCATAAAACCCAGTCTCTCCCAAAGGCACCAAGAATCAAAGGGCACTGTATACTCTCAATACTaGCAATTCCATCCACTCCAC +
Preference number: 5 (lower is better)
Translates to: TRLIKPSLSQRHQESKGTVYSQY*QFHPLH
Trigger: GTGGAGTGGATGGAATTGCAAGTATTGAGAGTATAC...AGTGCCCTTTGATTCTTGGTGCCTTTGGGAGAGACTGGGTTTTATGAGCCTCGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR CAA 90 bp ACGAGGCTCATAAAACCCAGTCTCTCCCAAAGGCACCAAGAATCAAAGGGCACTCTGTTGTGTCGGAACTaGAATGGCTTTGACTCAATA +
Preference number: 5 (lower is better)
Translates to: TRLIKPSLSQRHQESKGTLLCRN*NGFDSI
Trigger: TATTGAGTCAAAGCCATTCAAGTTCCGACACAACAG...AGTGCCCTTTGATTCTTGGTGCCTTTGGGAGAGACTGGGTTTTATGAGCCTCGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR CAA 90 bp AAAGAGCTGGCACTAGTGTTCTCTAAGCAGATTAATGGATGCAGCGAGGAAAACGCGCCTCAAACTCACTaGAGTTCGTGCTTTGTTGCT +
Preference number: 5 (lower is better)
Translates to: KELALVFSKQINGCSEENAPQTH*SSCFVA
Trigger: AGCAACAAAGCACGAACTCAAGTGAGTTTGAGGCGC...GTTTTCCTCGCTGCATCCATTAATCTGCTTAGAGAACACTAGTGCCAGCTCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS TCA 90 bp ACTCTCAATACTTGCAATTCCATCCACTCCACCATTGAGCTCCCTTaGTTTTCGTTTGCTGTCCTTCTTCCTCCGAAAGAGAGAGCCTAT +
Preference number: 5 (lower is better)
Translates to: TLNTCNSIHSTIELP*FSFAVLLPPKERAY
Trigger: ATAGGCTCTCTCTTTCGGAGGAAGAAGGACAGCAAACGAAAATCAAGGGAGCTCAATGGTGGAGTGGATGGAATTGCAAGTATTGAGAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS GCA 90 bp ACTCAATATCCACTTGCACTTCCATGCTGTTCCCTTCTCTATGGCTaGGTTAGTCCCACCGACGTTTATGTCATTCTCATCATCAAACTC +
Preference number: 5 (lower is better)
Translates to: TQYPLALPCCSLLYG*VSPTDVYVILIIKL
Trigger: GAGTTTGATGATGAGAATGACATAAACGTCGGTGGGACTAACGCAGCCATAGAGAAGGGAACAGCATGGAAGTGCAAGTGGATATTGAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
CDS-3UTR CAA 90 bp TCGCACATGGTTCAACCAGCTCCCAACACGGTTGTTCAGTGGTTCTTACTCTGCAAATGCTCATCAGAATaGAGTCAGAGTCAATGTTCA +
Preference number: 5 (lower is better)
Translates to: SHMVQPAPNTVVQWFLLCKCSSE*SQSQCS
Trigger: TGAACATTGACTCTGACTCAATTCTGATGAGCATTT...GCAGAGTAAGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCATGTGCGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR CAA 90 bp TTAACAGTCGCACATGGTTCAACCAGCTCCCAACACGGTTGTTCAGTGGTTCTTGAAATCCTTCTCTGTTaGGGTGCCTTTTTGACAGAA +
Preference number: 5 (lower is better)
Translates to: LTVAHGSTSSQHGCSVVLEILLC*GAFLTE
Trigger: TTCTGTCAAAAAGGCACCCAAACAGAGAAGGATTTC...AAGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCATGTGCGACTGTTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR CAA 90 bp TGGTTACCAATGGGCTGCATTAAGCTTGATATCCACATTGCATATGAAGAAATGCTCACTCCTTTCCCATaGCCCGCAGAGACACCACAA +
Preference number: 5 (lower is better)
Translates to: WLPMGCIKLDIHIAYEEMLTPFP*PAETPQ
Trigger: TTGTGGTGTCTCTGCGGGCAATGGGAAAGGAGTGAG...CATTTCTTCATATGCAATGTGGATATCAAGCTTAATGCAGCCCATTGGTAACCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR CAA 90 bp GTAATCTGCCACGTTCCATCCCTTAGTGGTTTCAATAAAATGTCACTAACCACTCTGCTGCTTCCACTGTaGTGTCGGAACTTGAATGGC +
Preference number: 5 (lower is better)
Translates to: VICHVPSLSGFNKMSLTTLLLPL*CRNLNG
Trigger: GCCATTCAAGTTCCGACACAACAGTGGAAGCAGCAG...AGTGGTTAGTGACATTTTATTGAAACCACTAAGGGATGGAACGTGGCAGATTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR CAA 90 bp TGGTTACCAATGGGCTGCATTAAGCTTGATATCCACATTGCATATGAAGAAATGCCTCCTGTTGCTTCCTaGGACCACTTGGTAGCACTG +
Preference number: 5 (lower is better)
Translates to: WLPMGCIKLDIHIAYEEMPPVAS*DHLVAL
Trigger: CAGTGCTACCAAGTGGTCCAAGGAAGCAACAGGAGG...CATTTCTTCATATGCAATGTGGATATCAAGCTTAATGCAGCCCATTGGTAACCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR CAA 90 bp GTAATCTGCCACGTTCCATCCCTTAGTGGTTTCAATAAAATGTCACTAACCACTCCATCCACTCCACCATaGAGCTCCCTTGATTTTCGT +
Preference number: 5 (lower is better)
Translates to: VICHVPSLSGFNKMSLTTPSTPP*SSLDFR
Trigger: ACGAAAATCAAGGGAGCTCAATGGTGGAGTGGATGG...AGTGGTTAGTGACATTTTATTGAAACCACTAAGGGATGGAACGTGGCAGATTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR CAA 90 bp CTTAACAGTCGCACATGGTTCAACCAGCTCCCAACACGGTTGTTCAGTGGTTCTGATTCCGCTTATGTTTaGAAACATCTTTGCCTTCAT +
Preference number: 5 (lower is better)
Translates to: LNSRTWFNQLPTRLFSGSDSAYV*KHLCLH
Trigger: ATGAAGGCAAAGATGTTTCAAAACATAAGCGGAATC...AGAACCACTGAACAACCGTGTTGGGAGCTGGTTGAACCATGTGCGACTGTTAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS TCA 90 bp CAGAATGTATACTCTCAATACTTGCAATTCCATCCACTCCACCATTaGGCTCCCTTGATTTTCGTTTGCTGTCCTTCTTCCTCCGAAAGA +
Preference number: 5 (lower is better)
Translates to: QNVYSQYLQFHPLHH*APLIFVCCPSSSER
Trigger: TCTTTCGGAGGAAGAAGGACAGCAAACGAAAATCAAGGGAGCTCAATGGTGGAGTGGATGGAATTGCAAGTATTGAGAGTATACATTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR CAA 90 bp TGGTTACCAATGGGCTGCATTAAGCTTGATATCCACATTGCATATGAAGAAATGTCTCCTATGCTAGGGTaGTGCCTTGCTTCTGCTACT +
Preference number: 5 (lower is better)
Translates to: WLPMGCIKLDIHIAYEEMSPMLG*CLASAT
Trigger: AGTAGCAGAAGCAAGGCACAACCCTAGCATAGGAGA...CATTTCTTCATATGCAATGTGGATATCAAGCTTAATGCAGCCCATTGGTAACCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR CAA 90 bp ATTTCATGTCTGCTGTTCACACACTCATTACTGAACAAAATTGGAATGCAAACAGAACAGGAAGCAGCTTaGGAAAGCAGAGCGCTGCTG +
Preference number: 5 (lower is better)
Translates to: ISCLLFTHSLLNKIGMQTEQEAA*ESRALL
Trigger: CAGCAGCGCTCTGCTTTCCAAAGCTGCTTCCTGTTC...TGTTTGCATTCCAATTTTGTTCAGTAATGAGTGTGTGAACAGCAGACATGAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS GCA 90 bp GATCTCTATCTGAGCCCATTTGCTGATGTAAACTCATGTCTAAAATaGTCATCAGAATTGAGTCAGAGTCAATGTTCATACACAGCCCTT +
Preference number: 5 (lower is better)
Translates to: DLYLSPFADVNSCLK*SSELSQSQCSYTAL
Trigger: AAGGGCTGTGTATGAACATTGACTCTGACTCAATTCTGATGAGCATTTTAGACATGAGTTTACATCAGCAAATGGGCTCAGATAGAGATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR CAA 90 bp ATTTCATGTCTGCTGTTCACACACTCATTACTGAACAAAATTGGAATGCAAACACATCACAGGTCTGGTTaGGATGCCAGATCTGTTTAC +
Preference number: 5 (lower is better)
Translates to: ISCLLFTHSLLNKIGMQTHHRSG*DARSVY
Trigger: GTAAACAGATCTGGCATCCAAACCAGACCTGTGATG...TGTTTGCATTCCAATTTTGTTCAGTAATGAGTGTGTGAACAGCAGACATGAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS-3UTR CAA 90 bp GTAATCTGCCACGTTCCATCCCTTAGTGGTTTCAATAAAATGTCACTAACCACTAAATGCTCATCAGAATaGAGTCAGAGTCAATGTTCA +
Preference number: 5 (lower is better)
Translates to: VICHVPSLSGFNKMSLTTKCSSE*SQSQCS
Trigger: TGAACATTGACTCTGACTCAATTCTGATGAGCATTT...AGTGGTTAGTGACATTTTATTGAAACCACTAAGGGATGGAACGTGGCAGATTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS-3UTR CAA 90 bp GAAACAAAGCCACACGTAGACCTTTTATATAAGCTTGGTACAAGCTCTGCATTGATGGAAGTCAATCCATaGTCAGAAGAGGTATTTGTA +
Preference number: 5 (lower is better)
Translates to: ETKPHVDLLYKLGTSSALMEVNP*SEEVFV
Trigger: TACAAATACCTCTTCTGACAATGGATTGACTTCCAT...CAATGCAGAGCTTGTACCAAGCTTATATAAAAGGTCTACGTGTGGCTTTGTTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS CCA 90 bp TCTATCCTTAGGTATTGTCGTAAGCAATCCACACAAGATCTATGGTaGCATGTCATTATATCAGGAAATCTGTCTTTAGAATGCCGTAAA +
Preference number: 5 (lower is better)
Translates to: SILRYCRKQSTQDLW*HVIISGNLSLECRK
Trigger: TTTACGGCATTCTAAAGACAGATTTCCTGATATAATGACATGCCACCATAGATCTTGTGTGGATTGCTTACGACAATACCTAAGGATAGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS CCA 90 bp ATTTCTATCCTTAGGTATTGTCGTAAGCAATCCACACAAGATCTATaGTGGCATGTCATTATATCAGGAAATCTGTCTTTAGAATGCCGT +
Preference number: 5 (lower is better)
Translates to: ISILRYCRKQSTQDL*WHVIISGNLSLECR
Trigger: ACGGCATTCTAAAGACAGATTTCCTGATATAATGACATGCCACCATAGATCTTGTGTGGATTGCTTACGACAATACCTAAGGATAGAAAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS CCA 72 bp TTACCTTCGGGCAAGCCACTGGACGCCCCGCCTGTGTaGCCTCGGGTAGCACCACTGTCATCCACACTGCTG +
Preference number: 6 (lower is better)
Translates to: LPSGKPLDAPPV*PRVAPLSSTLL
Trigger: CAGCAGTGTGGATGACAGTGGTGCTACCCGAGGCCACACAGGCGGGGCGTCCAGTGGCTTGCCCGAAGGTAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS TCA 72 bp CTGCAGCTACCACCGGAGACACGATTACAGACAGGGTaGCACCGCCTGCTATGGCCAGATTCCGCTTATGTT +
Preference number: 6 (lower is better)
Translates to: LQLPPETRLQTG*HRLLWPDSAYV
Trigger: AACATAAGCGGAATCTGGCCATAGCAGGCGGTGTCACCCTGTCTGTAATCGTGTCTCCGGTGGTAGCTGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS GCA 72 bp TCTAATGGTGCCTATTCGATCCATGTGGCTTCCACTTaGACTCAAACTGCCAGTCAGGCCGCCGACACTTCC +
Preference number: 6 (lower is better)
Translates to: SNGAYSIHVAST*TQTASQAADTS
Trigger: GGAAGTGTCGGCGGCCTGACTGGCAGTTTGAGTGCAAGTGGAAGCCACATGGATCGAATAGGCACCATTAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS GCA 72 bp TCTCATCATCAAACTCAATCCTCACTCCTTTCCCATTaGCCGCAGAGACACCACAACCCCCACTTCGGCAGA +
Preference number: 6 (lower is better)
Translates to: SHHQTQSSLLSH*PQRHHNPHFGR
Trigger: TCTGCCGAAGTGGGGGTTGTGGTGTCTCTGCGGGCAATGGGAAAGGAGTGAGGATTGAGTTTGATGATGAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS GCA 72 bp AGGCCGCCGACACTTCCCTCTCCTATGCTAGGGTTGTaGCTTGCTTCTGCTACTGATGTTGTATCTATGGCT +
Preference number: 6 (lower is better)
Translates to: RPPTLPSPMLGL*LASATDVVSMA
Trigger: AGCCATAGATACAACATCAGTAGCAGAAGCAAGGCACAACCCTAGCATAGGAGAGGGAAGTGTCGGCGGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS CAA 72 bp GTCAGGCCGCCGACACTTCCCTCTCCTATGCTAGGGTaGTGCCTTGCTTCTGCTACTGATGTTGTATCTATG +
Preference number: 6 (lower is better)
Translates to: VRPPTLPSPMLG*CLASATDVVSM
Trigger: CATAGATACAACATCAGTAGCAGAAGCAAGGCACAACCCTAGCATAGGAGAGGGAAGTGTCGGCGGCCTGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS CAA 90 bp AAACTGCCAGTCAGGCCGCCGACACTTCCCTCTCCTATGCTAGGGTaGTGCCTTGCTTCTGCTACTGATGTTGTATCTATGGCTGCGTTA +
Preference number: 6 (lower is better)
Translates to: KLPVRPPTLPSPMLG*CLASATDVVSMAAL
Trigger: TAACGCAGCCATAGATACAACATCAGTAGCAGAAGCAAGGCACAACCCTAGCATAGGAGAGGGAAGTGTCGGCGGCCTGACTGGCAGTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS CAA 90 bp TGGCCTCGGGTAGCACCACTGTCATCCACACTGCTGCTTCCACTGTaGTGTCGGAACTTGAATGGCTTTGACTCAATATCCACTTGCACT +
Preference number: 6 (lower is better)
Translates to: WPRVAPLSSTLLLPL*CRNLNGFDSISTCT
Trigger: AGTGCAAGTGGATATTGAGTCAAAGCCATTCAAGTTCCGACACAACAGTGGAAGCAGCAGTGTGGATGACAGTGGTGCTACCCGAGGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS CAA 72 bp CCAGCTAATGCCATGGTGCTCGCTGTCTCACTCAGGTaGTCTCTAATGGTGCCTATTCGATCCATGTGGCTT +
Preference number: 6 (lower is better)
Translates to: PANAMVLAVSLR*SLMVPIRSMWL
Trigger: AAGCCACATGGATCGAATAGGCACCATTAGAGACAACCTGAGTGAGACAGCGAGCACCATGGCATTAGCTGG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS CAA 90 bp ATACTAGCTCCAGCTAATGCCATGGTGCTCGCTGTCTCACTCAGGTaGTCTCTAATGGTGCCTATTCGATCCATGTGGCTTCCACTTGCA +
Preference number: 6 (lower is better)
Translates to: ILAPANAMVLAVSLR*SLMVPIRSMWLPLA
Trigger: TGCAAGTGGAAGCCACATGGATCGAATAGGCACCATTAGAGACAACCTGAGTGAGACAGCGAGCACCATGGCATTAGCTGGAGCTAGTAT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS GCA 72 bp ACAGTCTGGAGCCGGACACCACCTACAGTCAGGATCTaGAACAAGCCACCGTCGAAGCATAAATTCTTCATA +
Preference number: 6 (lower is better)
Translates to: TVWSRTPPTVRI*NKPPSKHKFFI
Trigger: TATGAAGAATTTATGCTTCGACGGTGGCTTGTTGCAGATCCTGACTGTAGGTGGTGTCCGGCTCCAGACTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS GCA 72 bp CAGAGGGATGTAGGAGTTGAGAATGGATCCCGCCATTaGTTTGGTGCTGGCGTTATCACTAACTGTTCCCAA +
Preference number: 6 (lower is better)
Translates to: QRDVGVENGSRH*FGAGVITNCSQ
Trigger: TTGGGAACAGTTAGTGATAACGCCAGCACCAAAGCAATGGCGGGATCCATTCTCAACTCCTACATCCCTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS GCA 72 bp CCACTTGCACTTCCATGCTGTTCCCTTCTCTATGGCTaGGTTAGTCCCACCGACGTTTATGTCATTCTCATC +
Preference number: 6 (lower is better)
Translates to: PLALPCCSLLYG*VSPTDVYVILI
Trigger: GATGAGAATGACATAAACGTCGGTGGGACTAACGCAGCCATAGAGAAGGGAACAGCATGGAAGTGCAAGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
CDS CCA 72 bp CACAGCCTTCTCGCCCACAAGTTAGTTTTGGACAGCTaGCACATCCAAATGCTATCACAGCGTATCCACAGT +
Preference number: 6 (lower is better)
Translates to: HSLLAHKLVLDS*HIQMLSQRIHS
Trigger: ACTGTGGATACGCTGTGATAGCATTTGGATGTGCCAGCTGTCCAAAACTAACTTGTGGGCGAGAAGGCTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS CAA 90 bp GCACCACTGTCATCCACACTGCTGCTTCCACTGTTGTGTCGGAACTaGAATGGCTTTGACTCAATATCCACTTGCACTTCCATGCTGTTC +
Preference number: 6 (lower is better)
Translates to: APLSSTLLLPLLCRN*NGFDSISTCTSMLF
Trigger: GAACAGCATGGAAGTGCAAGTGGATATTGAGTCAAAGCCATTCAAGTTCCGACACAACAGTGGAAGCAGCAGTGTGGATGACAGTGGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS TCA 72 bp GCTGCTTCCACTGTTGTGTCGGAACTTGAATGGCTTTaGCTCAATATCCACTTGCACTTCCATGCTGTTCCC +
Preference number: 6 (lower is better)
Translates to: AASTVVSELEWL*LNIHLHFHAVP
Trigger: GGGAACAGCATGGAAGTGCAAGTGGATATTGAGTCAAAGCCATTCAAGTTCCGACACAACAGTGGAAGCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS CAA 72 bp CCATCCACTCCACCATTGAGCTCCCTTGATTTTCGTTaGCTGTCCTTCTTCCTCCGAAAGAGAGAGCCTATT +
Preference number: 6 (lower is better)
Translates to: PSTPPLSSLDFR*LSFFLRKREPI
Trigger: AATAGGCTCTCTCTTTCGGAGGAAGAAGGACAGCAAACGAAAATCAAGGGAGCTCAATGGTGGAGTGGATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS CAA 72 bp GTAGCACCACTGTCATCCACACTGCTGCTTCCACTGTaGTGTCGGAACTTGAATGGCTTTGACTCAATATCC +
Preference number: 6 (lower is better)
Translates to: VAPLSSTLLLPL*CRNLNGFDSIS
Trigger: GGATATTGAGTCAAAGCCATTCAAGTTCCGACACAACAGTGGAAGCAGCAGTGTGGATGACAGTGGTGCTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS CAA 90 bp TCCTTCTTCCTCCGAAAGAGAGAGCCTATTGAAATCCTTCTCTGTTaGGGTGCCTTTTTGACAGAAGGCAAGCTCACGGAGGAAGTAGAA +
Preference number: 6 (lower is better)
Translates to: SFFLRKREPIEILLC*GAFLTEGKLTEEVE
Trigger: TTCTACTTCCTCCGTGAGCTTGCCTTCTGTCAAAAAGGCACCCAAACAGAGAAGGATTTCAATAGGCTCTCTCTTTCGGAGGAAGAAGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS TCA 72 bp ACTTGCAATTCCATCCACTCCACCATTGAGCTCCCTTaGTTTTCGTTTGCTGTCCTTCTTCCTCCGAAAGAG +
Preference number: 6 (lower is better)
Translates to: TCNSIHSTIELP*FSFAVLLPPKE
Trigger: CTCTTTCGGAGGAAGAAGGACAGCAAACGAAAATCAAGGGAGCTCAATGGTGGAGTGGATGGAATTGCAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS TCA 72 bp GAGAAATTGGGACCACACCATAGACATAAGCTAGCATaGTGGGAACACCAATGCCTACAGTCACTGCAGCTA +
Preference number: 6 (lower is better)
Translates to: EKLGPHHRHKLA*WEHQCLQSLQL
Trigger: TAGCTGCAGTGACTGTAGGCATTGGTGTTCCCATCATGCTAGCTTATGTCTATGGTGTGGTCCCAATTTCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS TCA 72 bp CATCCACACTGCTGCTTCCACTGTTGTGTCGGAACTTaGATGGCTTTGACTCAATATCCACTTGCACTTCCA +
Preference number: 6 (lower is better)
Translates to: HPHCCFHCCVGT*MALTQYPLALP
Trigger: TGGAAGTGCAAGTGGATATTGAGTCAAAGCCATTCAAGTTCCGACACAACAGTGGAAGCAGCAGTGTGGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS GCA 72 bp TGTCGGAACTTGAATGGCTTTGACTCAATATCCACTTaGACTTCCATGCTGTTCCCTTCTCTATGGCTGCGT +
Preference number: 6 (lower is better)
Translates to: CRNLNGFDSIST*TSMLFPSLWLR
Trigger: ACGCAGCCATAGAGAAGGGAACAGCATGGAAGTGCAAGTGGATATTGAGTCAAAGCCATTCAAGTTCCGACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228358.2
CDS CAA 72 bp GAGCCTATTGAAATCCTTCTCTGTTTGGGTGCCTTTTaGACAGAAGGCAAGCTCACGGAGGAAGTAGAAGAC +
Preference number: 6 (lower is better)
Translates to: EPIEILLCLGAF*TEGKLTEEVED
Trigger: GTCTTCTACTTCCTCCGTGAGCTTGCCTTCTGTCAAAAAGGCACCCAAACAGAGAAGGATTTCAATAGGCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS CAA 72 bp TCATCCACACTGCTGCTTCCACTGTTGTGTCGGAACTaGAATGGCTTTGACTCAATATCCACTTGCACTTCC +
Preference number: 6 (lower is better)
Translates to: SSTLLLPLLCRN*NGFDSISTCTS
Trigger: GGAAGTGCAAGTGGATATTGAGTCAAAGCCATTCAAGTTCCGACACAACAGTGGAAGCAGCAGTGTGGATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS CAA 90 bp CTTGCAATTCCATCCACTCCACCATTGAGCTCCCTTGATTTTCGTTaGCTGTCCTTCTTCCTCCGAAAGAGAGAGCCTATTGAAATCCTT +
Preference number: 6 (lower is better)
Translates to: LAIPSTPPLSSLDFR*LSFFLRKREPIEIL
Trigger: AAGGATTTCAATAGGCTCTCTCTTTCGGAGGAAGAAGGACAGCAAACGAAAATCAAGGGAGCTCAATGGTGGAGTGGATGGAATTGCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS CAA 72 bp TCCACTGAGACTACACCGTTCTTTCTGTACGTCTGCTaGTACTTCCAACCTGTTGAAACAGTTTACCATGGC +
Preference number: 6 (lower is better)
Translates to: STETTPFFLYVC*YFQPVETVYHG
Trigger: GCCATGGTAAACTGTTTCAACAGGTTGGAAGTACAAGCAGACGTACAGAAAGAACGGTGTAGTCTCAGTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022890.10
CDS TCA 72 bp TTTGCTGTCCTTCTTCCTCCGAAAGAGAGAGCCTATTaGAATCCTTCTCTGTTTGGGTGCCTTTTTGACAGA +
Preference number: 6 (lower is better)
Translates to: FAVLLPPKERAY*NPSLFGCLFDR
Trigger: TCTGTCAAAAAGGCACCCAAACAGAGAAGGATTTCAATAGGCTCTCTCTTTCGGAGGAAGAAGGACAGCAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS TCA 72 bp TACTCTCAATACTTGCAATTCCATCCACTCCACCATTaGGCTCCCTTGATTTTCGTTTGCTGTCCTTCTTCC +
Preference number: 6 (lower is better)
Translates to: YSQYLQFHPLHH*APLIFVCCPSS
Trigger: GGAAGAAGGACAGCAAACGAAAATCAAGGGAGCTCAATGGTGGAGTGGATGGAATTGCAAGTATTGAGAGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS CCA 72 bp ATAGATGAAGAACGTATAGTTCTTAAGCGTAAACTTTaGGCTCTTTCCTGTCGAGCAGCATCACAGGTCTGG +
Preference number: 6 (lower is better)
Translates to: IDEERIVLKRKL*ALSCRAASQVW
Trigger: CCAGACCTGTGATGCTGCTCGACAGGAAAGAGCCCAAAGTTTACGCTTAAGAACTATACGTTCTTCATCTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS CAA 90 bp TCAGAATGTATACTCTCAATACTTGCAATTCCATCCACTCCACCATaGAGCTCCCTTGATTTTCGTTTGCTGTCCTTCTTCCTCCGAAAG +
Preference number: 6 (lower is better)
Translates to: SECILSILAIPSTPP*SSLDFRLLSFFLRK
Trigger: CTTTCGGAGGAAGAAGGACAGCAAACGAAAATCAAGGGAGCTCAATGGTGGAGTGGATGGAATTGCAAGTATTGAGAGTATACATTCTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS CAA 72 bp ATACTCTCAATACTTGCAATTCCATCCACTCCACCATaGAGCTCCCTTGATTTTCGTTTGCTGTCCTTCTTC +
Preference number: 6 (lower is better)
Translates to: ILSILAIPSTPP*SSLDFRLLSFF
Trigger: GAAGAAGGACAGCAAACGAAAATCAAGGGAGCTCAATGGTGGAGTGGATGGAATTGCAAGTATTGAGAGTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS CCA 72 bp ATTCATCTTTATTATATAAGCAGCACATCGTGGACATaGCTTTATATCATCAGCTGCTGCTCCAGATTCCTG +
Preference number: 6 (lower is better)
Translates to: IHLYYISSTSWT*LYIISCCSRFL
Trigger: CAGGAATCTGGAGCAGCAGCTGATGATATAAAGCCATGTCCACGATGTGCTGCTTATATAATAAAGATGAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS GCA 72 bp CTGAGCCCATTTGCTGATGTAAACTCATGTCTAAAATaGTCATCAGAATTGAGTCAGAGTCAATGTTCATAC +
Preference number: 6 (lower is better)
Translates to: LSPFADVNSCLK*SSELSQSQCSY
Trigger: GTATGAACATTGACTCTGACTCAATTCTGATGAGCATTTTAGACATGAGTTTACATCAGCAAATGGGCTCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS CCA 72 bp GCGAATGTCATGAGGATTAAACCGTTCAGTGCATTCTaGACAACTGATATTAACTCTACTTTCAGAGATTTC +
Preference number: 6 (lower is better)
Translates to: ANVMRIKPFSAF*TTDINSTFRDF
Trigger: GAAATCTCTGAAAGTAGAGTTAATATCAGTTGTCCAGAATGCACTGAACGGTTTAATCCTCATGACATTCGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS TCA 72 bp ATTAAGACATCATCACTTAATATCAAGCGAATGTCATaGGGATTAAACCGTTCAGTGCATTCTGGACAACTG +
Preference number: 6 (lower is better)
Translates to: IKTSSLNIKRMS*GLNRSVHSGQL
Trigger: CAGTTGTCCAGAATGCACTGAACGGTTTAATCCTCATGACATTCGCTTGATATTAAGTGATGATGTCTTAAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS CCA 72 bp AGGTATTGTCGTAAGCAATCCACACAAGATCTATGGTaGCATGTCATTATATCAGGAAATCTGTCTTTAGAA +
Preference number: 6 (lower is better)
Translates to: RYCRKQSTQDLW*HVIISGNLSLE
Trigger: TTCTAAAGACAGATTTCCTGATATAATGACATGCCACCATAGATCTTGTGTGGATTGCTTACGACAATACCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2
CDS CCA 72 bp CTTAGGTATTGTCGTAAGCAATCCACACAAGATCTATaGTGGCATGTCATTATATCAGGAAATCTGTCTTTA +
Preference number: 6 (lower is better)
Translates to: LRYCRKQSTQDL*WHVIISGNLSL
Trigger: TAAAGACAGATTTCCTGATATAATGACATGCCACCATAGATCTTGTGTGGATTGCTTACGACAATACCTAAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022890.10
ENSMUST00000228358.2