Pregenerated sensors for RNF186 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000070661Ensembl transcript IDs: ENSMUST00000116094.5, ENSMUST00000239443.2
Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CCACCACCCTTGAGTCACTCATTCAGGGGGTGTCTCCTCTCTTTCCCCCTTTCCGCAGACTGTGAGGTCTaGGGGAGGAGGGAACCTTGG | + |
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Preference number: 2 (lower is better) Translates to: PPPLSHSFRGCLLSFPLSADCEV*GRREPW Trigger: CCAAGGTTCCCTCCTCCCCCAGACCTCACAGTCTGC...GGAAAGGGGGAAAGAGAGGAGACACCCCCTGAATGAGTGACTCAAGGGTGGTGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| 3UTR-3UTR CCA 90 bp | ACAGAATCCTTGATCCAACATGGCCAGTCTGGCTTTGACACGCAAGTCCAGTTCGGGAGGAGGGAACCTTaGCAGCACTGGGCCTGTAGG | + |
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Preference number: 2 (lower is better) Translates to: TESLIQHGQSGFDTQVQFGRREP*QHWACR Trigger: CCTACAGGCCCAGTGCTGCCAAGGTTCCCTCCTCCC...GAACTGGACTTGCGTGTCAAAGCCAGACTGGCCATGTTGGATCAAGGATTCTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| 3UTR-3UTR TCA 90 bp | AAGAGACCTGGTTCTATTTGCTTTGTAGTAAGGCCAATGTCCCAATATGTGTACTACCCATGCAGACTGTaGGGTCTGGGGGAGGAGGGA | + |
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Preference number: 2 (lower is better) Translates to: KRPGSICFVVRPMSQYVYYPCRL*GLGEEG Trigger: TCCCTCCTCCCCCAGACCTCACAGTCTGCATGGGTA...GTACACATATTGGGACATTGGCCTTACTACAAAGCAAATAGAACCAGGTCTCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| 3UTR-3UTR TCA 90 bp | ACAAAAGAGACCTGGTTCTATTTGCTTTGTAGTAAGGCCAATGTCCCAATATGTTACCCATGCAGACTGTaGGGTCTGGGGGAGGAGGGA | + |
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Preference number: 2 (lower is better) Translates to: TKETWFYLLCSKANVPICYPCRL*GLGEEG Trigger: TCCCTCCTCCCCCAGACCTCACAGTCTGCATGGGTA...ACATATTGGGACATTGGCCTTACTACAAAGCAAATAGAACCAGGTCTCTTTTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| 3UTR-3UTR CCA 90 bp | ACAAAAGAGACCTGGTTCTATTTGCTTTGTAGTAAGGCCAATGTCCCAATATGTGCAGACTGTGAGGTCTaGGGGAGGAGGGAACCTTGG | + |
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Preference number: 2 (lower is better) Translates to: TKETWFYLLCSKANVPICADCEV*GRREPW Trigger: CCAAGGTTCCCTCCTCCCCCAGACCTCACAGTCTGC...ACATATTGGGACATTGGCCTTACTACAAAGCAAATAGAACCAGGTCTCTTTTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| 3UTR-3UTR GCA 90 bp | AGACCTGGTTCTATTTGCTTTGTAGTAAGGCCAATGTCCCAATATGTGTACAAAACAGGAACAGGCAGGTaGGATCCCACTGTTCCAGCA | + |
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Preference number: 2 (lower is better) Translates to: RPGSICFVVRPMSQYVYKTGTGR*DPTVPA Trigger: TGCTGGAACAGTGGGATCGCACCTGCCTGTTCCTGT...TTTGTACACATATTGGGACATTGGCCTTACTACAAAGCAAATAGAACCAGGTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| 3UTR-3UTR GCA 90 bp | TTACAAAAGAGACCTGGTTCTATTTGCTTTGTAGTAAGGCCAATGTCCCAATATCCCCTTTCCTTCCTATaGTACACAGGAACAGGCAGG | + |
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Preference number: 2 (lower is better) Translates to: LQKRPGSICFVVRPMSQYPLSFL*YTGTGR Trigger: CCTGCCTGTTCCTGTGTAGCATAGGAAGGAAAGGGG...ATATTGGGACATTGGCCTTACTACAAAGCAAATAGAACCAGGTCTCTTTTGTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000239443.2 |
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| 3UTR TCA 72 bp | GGCAGGTGCGATCCCACTGTTCCAGCACAGAATCCTTaGTCCAACATGGCCAGTCTGGCTTTGACACGCAAG | + |
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Preference number: 3 (lower is better) Translates to: GRCDPTVPAQNP*SNMASLALTRK Trigger: CTTGCGTGTCAAAGCCAGACTGGCCATGTTGGATCAAGGATTCTGTGCTGGAACAGTGGGATCGCACCTGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| 3UTR-3UTR CAA 90 bp | TTTCCCCCTTTCCTTCCTATGCTACACAGGAACAGGCAGGTGCGATCCCACTGTTCCAGCACAGAATCCTaGATCCAACATGGCCAGTCT | + |
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Preference number: 3 (lower is better) Translates to: FPPFLPMLHRNRQVRSHCSSTES*IQHGQS Trigger: AGACTGGCCATGTTGGATCAAGGATTCTGTGCTGGA...ACAGTGGGATCGCACCTGCCTGTTCCTGTGTAGCATAGGAAGGAAAGGGGGAAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| 3UTR-3UTR CAA 90 bp | ACCACCCTTGAGTCACTCATTCAGGGGGTGTCTCCTCTCTTTCCCCCTTTCCTTTCCAGCACAGAATCCTaGATCCAACATGGCCAGTCT | + |
|
Preference number: 3 (lower is better) Translates to: TTLESLIQGVSPLFPPFLSSTES*IQHGQS Trigger: AGACTGGCCATGTTGGATCAAGGATTCTGTGCTGGA...AAGGAAAGGGGGAAAGAGAGGAGACACCCCCTGAATGAGTGACTCAAGGGTGGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| 3UTR-3UTR CAA 90 bp | AGACCTGGTTCTATTTGCTTTGTAGTAAGGCCAATGTCCCAATATGTGTACAAAGGGACCCCACCACCCTaGAGTCACTCATTCAGGGGG | + |
|
Preference number: 3 (lower is better) Translates to: RPGSICFVVRPMSQYVYKGTPPP*SHSFRG Trigger: CCCCCTGAATGAGTGACTCAAGGGTGGTGGGGTCCC...TTTGTACACATATTGGGACATTGGCCTTACTACAAAGCAAATAGAACCAGGTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| 3UTR-3UTR CAA 90 bp | ACAAAAGAGACCTGGTTCTATTTGCTTTGTAGTAAGGCCAATGTCCCAATATGTGGGACCCCACCACCCTaGAGTCACTCATTCAGGGGG | + |
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Preference number: 3 (lower is better) Translates to: TKETWFYLLCSKANVPICGTPPP*SHSFRG Trigger: CCCCCTGAATGAGTGACTCAAGGGTGGTGGGGTCCC...ACATATTGGGACATTGGCCTTACTACAAAGCAAATAGAACCAGGTCTCTTTTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS-3UTR TCA 90 bp | ACTGTGAGGTCTGGGGGAGGAGGGAACCTTGGCAGCACTGGGCCTGTAGGGATCCTCCCGGGACAGCAGTaGCCTTTCGGCACAGCGGAC | + |
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Preference number: 4 (lower is better) Translates to: TVRSGGGGNLGSTGPVGILPGQQ*PFGTAD Trigger: GTCCGCTGTGCCGAAAGGTCACTGCTGTCCCGGGAG...GATCCCTACAGGCCCAGTGCTGCCAAGGTTCCCTCCTCCCCCAGACCTCACAGT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS-3UTR TCA 90 bp | ACCACCCTTGAGTCACTCATTCAGGGGGTGTCTCCTCTCTTTCCCCCTTTCCTTCCTCCACAGAGATGCTaGGCCGCCCGGTGGGCCCCA | + |
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Preference number: 4 (lower is better) Translates to: TTLESLIQGVSPLFPPFLPPQRC*AARWAP Trigger: TGGGGCCCACCGGGCGGCTCAGCATCTCTGTGGAGG...AAGGAAAGGGGGAAAGAGAGGAGACACCCCCTGAATGAGTGACTCAAGGGTGGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS-3UTR GCA 90 bp | ATGCAGACTGTGAGGTCTGGGGGAGGAGGGAACCTTGGCAGCACTGGGCCTGTAGCTGTGGGGCCTCAGTaGAGGACATTCTGGGTACAG | + |
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Preference number: 4 (lower is better) Translates to: MQTVRSGGGGNLGSTGPVAVGPQ*RTFWVQ Trigger: CTGTACCCAGAATGTCCTGCACTGAGGCCCCACAGC...TACAGGCCCAGTGCTGCCAAGGTTCCCTCCTCCCCCAGACCTCACAGTCTGCAT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000239443.2 |
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| CDS-3UTR TCA 90 bp | TTTCCCCCTTTCCTTCCTATGCTACACAGGAACAGGCAGGTGCGATCCCACTGTTGGGCCCCAAGGCAATaGTGGTGCTGGTGGTGGTGG | + |
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Preference number: 4 (lower is better) Translates to: FPPFLPMLHRNRQVRSHCWAPRQ*WCWWWW Trigger: CCACCACCACCAGCACCATCATTGCCTTGGGGCCCA...ACAGTGGGATCGCACCTGCCTGTTCCTGTGTAGCATAGGAAGGAAAGGGGGAAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS-3UTR CCA 90 bp | CTCTTTCCCCCTTTCCTTCCTATGCTACACAGGAACAGGCAGGTGCGATCCCACCGCTGGGATAGGCTGTaGGGCCTCAGTGCAGGACAT | + |
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Preference number: 4 (lower is better) Translates to: LFPPFLPMLHRNRQVRSHRWDRL*GLSAGH Trigger: ATGTCCTGCACTGAGGCCCCACAGCCTATCCCAGCG...GTGGGATCGCACCTGCCTGTTCCTGTGTAGCATAGGAAGGAAAGGGGGAAAGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS-3UTR CCA 90 bp | CTCTTTCCCCCTTTCCTTCCTATGCTACACAGGAACAGGCAGGTGCGATCCCACCCCACCATCGCCTCCTaGTCTCGCAAGCTGCAGATG | + |
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Preference number: 4 (lower is better) Translates to: LFPPFLPMLHRNRQVRSHPTIAS*SRKLQM Trigger: CATCTGCAGCTTGCGAGACCAGGAGGCGATGGTGGG...GTGGGATCGCACCTGCCTGTTCCTGTGTAGCATAGGAAGGAAAGGGGGAAAGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS-3UTR CCA 90 bp | CAGGCAGGTGCGATCCCACTGTTCCAGCACAGAATCCTTGATCCAACATGGCCACCCACCATCGCCTCCTaGTCTCGCAAGCTGCAGATG | + |
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Preference number: 4 (lower is better) Translates to: QAGAIPLFQHRILDPTWPPTIAS*SRKLQM Trigger: CATCTGCAGCTTGCGAGACCAGGAGGCGATGGTGGG...TGGCCATGTTGGATCAAGGATTCTGTGCTGGAACAGTGGGATCGCACCTGCCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS-3UTR TCA 90 bp | CAGGCAGGTGCGATCCCACTGTTCCAGCACAGAATCCTTGATCCAACATGGCCAGGAGAGCCAGAGCAATaGCAAAGGCCAACACCCACC | + |
|
Preference number: 4 (lower is better) Translates to: QAGAIPLFQHRILDPTWPGEPEQ*QRPTPT Trigger: GGTGGGTGTTGGCCTTTGTCATTGCTCTGGCTCTCC...TGGCCATGTTGGATCAAGGATTCTGTGCTGGAACAGTGGGATCGCACCTGCCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS-3UTR TCA 90 bp | CTCTTTCCCCCTTTCCTTCCTATGCTACACAGGAACAGGCAGGTGCGATCCCACTTCTGGCTCTGGGGGTaGCAGCAGAATAGGGTGGAC | + |
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Preference number: 4 (lower is better) Translates to: LFPPFLPMLHRNRQVRSHFWLWG*QQNRVD Trigger: GTCCACCCTATTCTGCTGTCACCCCCAGAGCCAGAA...GTGGGATCGCACCTGCCTGTTCCTGTGTAGCATAGGAAGGAAAGGGGGAAAGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS-3UTR GCA 90 bp | CAGGCAGGTGCGATCCCACTGTTCCAGCACAGAATCCTTGATCCAACATGGCCATGGGGCAAAGCCAGTTaGTGTTCTGGCTCTGGGGGT | + |
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Preference number: 4 (lower is better) Translates to: QAGAIPLFQHRILDPTWPWGKAS*CSGSGG Trigger: ACCCCCAGAGCCAGAACAGCAACTGGCTTTGCCCCA...TGGCCATGTTGGATCAAGGATTCTGTGCTGGAACAGTGGGATCGCACCTGCCTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS-3UTR CCA 90 bp | CCACCACCCTTGAGTCACTCATTCAGGGGGTGTCTCCTCTCTTTCCCCCTTTCCCTTCTCCTGTCCAGTTaGCTGGCCGAGTTGCTGAAG | + |
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Preference number: 4 (lower is better) Translates to: PPPLSHSFRGCLLSFPLSLLLSS*LAELLK Trigger: CTTCAGCAACTCGGCCAGCCAACTGGACAGGAGAAG...GGAAAGGGGGAAAGAGAGGAGACACCCCCTGAATGAGTGACTCAAGGGTGGTGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS-3UTR GCA 90 bp | ACTGTGAGGTCTGGGGGAGGAGGGAACCTTGGCAGCACTGGGCCTGTAGGGATCGAAGTGATCTGGGTTTaGTTTTGCTCTCTGCAGAAC | + |
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Preference number: 4 (lower is better) Translates to: TVRSGGGGNLGSTGPVGIEVIWV*FCSLQN Trigger: GTTCTGCAGAGAGCAAAAGCAAACCCAGATCACTTC...GATCCCTACAGGCCCAGTGCTGCCAAGGTTCCCTCCTCCCCCAGACCTCACAGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| 3UTR CAA 72 bp | AGGCAGGTGCGATCCCACTGTTCCAGCACAGAATCCTaGATCCAACATGGCCAGTCTGGCTTTGACACGCAA | + |
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Preference number: 4 (lower is better) Translates to: RQVRSHCSSTES*IQHGQSGFDTQ Trigger: TTGCGTGTCAAAGCCAGACTGGCCATGTTGGATCAAGGATTCTGTGCTGGAACAGTGGGATCGCACCTGCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS-3UTR TCA 90 bp | AAGAGACCTGGTTCTATTTGCTTTGTAGTAAGGCCAATGTCCCAATATGTGTACCCTCCACAGAGATGCTaGGCCGCCCGGTGGGCCCCA | + |
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Preference number: 4 (lower is better) Translates to: KRPGSICFVVRPMSQYVYPPQRC*AARWAP Trigger: TGGGGCCCACCGGGCGGCTCAGCATCTCTGTGGAGG...GTACACATATTGGGACATTGGCCTTACTACAAAGCAAATAGAACCAGGTCTCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS-3UTR TCA 90 bp | ACAGAATCCTTGATCCAACATGGCCAGTCTGGCTTTGACACGCAAGTCCAGTTCGGAGAGCCAGAGCAATaGCAAAGGCCAACACCCACC | + |
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Preference number: 4 (lower is better) Translates to: TESLIQHGQSGFDTQVQFGEPEQ*QRPTPT Trigger: GGTGGGTGTTGGCCTTTGTCATTGCTCTGGCTCTCC...GAACTGGACTTGCGTGTCAAAGCCAGACTGGCCATGTTGGATCAAGGATTCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS-3UTR CCA 90 bp | CCTGGTTCTATTTGCTTTGTAGTAAGGCCAATGTCCCAATATGTGTACAAAGGGCGCTGGGATAGGCTGTaGGGCCTCAGTGCAGGACAT | + |
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Preference number: 4 (lower is better) Translates to: PGSICFVVRPMSQYVYKGRWDRL*GLSAGH Trigger: ATGTCCTGCACTGAGGCCCCACAGCCTATCCCAGCG...CCCTTTGTACACATATTGGGACATTGGCCTTACTACAAAGCAAATAGAACCAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS-3UTR TCA 90 bp | ACAAAAGAGACCTGGTTCTATTTGCTTTGTAGTAAGGCCAATGTCCCAATATGTTGGGCCCCAAGGCAATaGTGGTGCTGGTGGTGGTGG | + |
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Preference number: 4 (lower is better) Translates to: TKETWFYLLCSKANVPICWAPRQ*WCWWWW Trigger: CCACCACCACCAGCACCATCATTGCCTTGGGGCCCA...ACATATTGGGACATTGGCCTTACTACAAAGCAAATAGAACCAGGTCTCTTTTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS-3UTR TCA 90 bp | CCTGGTTCTATTTGCTTTGTAGTAAGGCCAATGTCCCAATATGTGTACAAAGGGTTCTGGCTCTGGGGGTaGCAGCAGAATAGGGTGGAC | + |
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Preference number: 4 (lower is better) Translates to: PGSICFVVRPMSQYVYKGFWLWG*QQNRVD Trigger: GTCCACCCTATTCTGCTGTCACCCCCAGAGCCAGAA...CCCTTTGTACACATATTGGGACATTGGCCTTACTACAAAGCAAATAGAACCAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS-3UTR GCA 90 bp | ACAGAATCCTTGATCCAACATGGCCAGTCTGGCTTTGACACGCAAGTCCAGTTCGACCAGGTGTCTTCCTaGACATATAGCAGAAGCTTC | + |
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Preference number: 4 (lower is better) Translates to: TESLIQHGQSGFDTQVQFDQVSS*TYSRSF Trigger: GAAGCTTCTGCTATATGTGCAGGAAGACACCTGGTC...GAACTGGACTTGCGTGTCAAAGCCAGACTGGCCATGTTGGATCAAGGATTCTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS-3UTR GCA 90 bp | CCTGGTTCTATTTGCTTTGTAGTAAGGCCAATGTCCCAATATGTGTACAAAGGGTGGGGCAAAGCCAGTTaGTGTTCTGGCTCTGGGGGT | + |
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Preference number: 4 (lower is better) Translates to: PGSICFVVRPMSQYVYKGWGKAS*CSGSGG Trigger: ACCCCCAGAGCCAGAACAGCAACTGGCTTTGCCCCA...CCCTTTGTACACATATTGGGACATTGGCCTTACTACAAAGCAAATAGAACCAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS-3UTR TCA 90 bp | CCTGGTTCTATTTGCTTTGTAGTAAGGCCAATGTCCCAATATGTGTACAAAGGGGGGCAGCTACACGGTTaGCACTTACAGTGTCCTGTT | + |
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Preference number: 4 (lower is better) Translates to: PGSICFVVRPMSQYVYKGGQLHG*HLQCPV Trigger: AACAGGACACTGTAAGTGTCAACCGTGTAGCTGCCC...CCCTTTGTACACATATTGGGACATTGGCCTTACTACAAAGCAAATAGAACCAGG 47% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS-3UTR GCA 90 bp | AGACCTGGTTCTATTTGCTTTGTAGTAAGGCCAATGTCCCAATATGTGTACAAACTCCCTTCTGCTCTCTaGGGGTACCTGCTGACAACC | + |
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Preference number: 4 (lower is better) Translates to: RPGSICFVVRPMSQYVYKLPSAL*GYLLTT Trigger: GGTTGTCAGCAGGTACCCGCAGAGAGCAGAAGGGAG...TTTGTACACATATTGGGACATTGGCCTTACTACAAAGCAAATAGAACCAGGTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239443.2 |
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| CDS-3UTR GCA 90 bp | CCTGGTTCTATTTGCTTTGTAGTAAGGCCAATGTCCCAATATGTGTACAAAGGGTTTGCTTTTGCTCTCTaGAGAACAGAGTCCTGGGGC | + |
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Preference number: 4 (lower is better) Translates to: PGSICFVVRPMSQYVYKGFAFAL*RTESWG Trigger: GCCCCAGGACTCTGTTCTGCAGAGAGCAAAAGCAAA...CCCTTTGTACACATATTGGGACATTGGCCTTACTACAAAGCAAATAGAACCAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS-3UTR CCA 90 bp | ACAAAAGAGACCTGGTTCTATTTGCTTTGTAGTAAGGCCAATGTCCCAATATGTTTCTGGGTACAGAGGTaGAGGGACAAGGCTGATCCG | + |
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Preference number: 4 (lower is better) Translates to: TKETWFYLLCSKANVPICFWVQR*RDKADP Trigger: CGGATCAGCCTTGTCCCTCCACCTCTGTACCCAGAA...ACATATTGGGACATTGGCCTTACTACAAAGCAAATAGAACCAGGTCTCTTTTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239443.2 |
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| CDS-3UTR CCA 90 bp | ACAAAAGAGACCTGGTTCTATTTGCTTTGTAGTAAGGCCAATGTCCCAATATGTCAGTGCAGGACATTCTaGGTACAGAGGTGGAGGGAC | + |
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Preference number: 4 (lower is better) Translates to: TKETWFYLLCSKANVPICQCRTF*VQRWRD Trigger: GTCCCTCCACCTCTGTACCCAGAATGTCCTGCACTG...ACATATTGGGACATTGGCCTTACTACAAAGCAAATAGAACCAGGTCTCTTTTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239443.2 |
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| CDS-3UTR TCA 90 bp | ACAAAAGAGACCTGGTTCTATTTGCTTTGTAGTAAGGCCAATGTCCCAATATGTGGGCAGCTACACGGTTaGCACTTACAGTGTCCTGTT | + |
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Preference number: 4 (lower is better) Translates to: TKETWFYLLCSKANVPICGQLHG*HLQCPV Trigger: AACAGGACACTGTAAGTGTCAACCGTGTAGCTGCCC...ACATATTGGGACATTGGCCTTACTACAAAGCAAATAGAACCAGGTCTCTTTTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS-3UTR GCA 90 bp | AAGAGACCTGGTTCTATTTGCTTTGTAGTAAGGCCAATGTCCCAATATGTGTACGACCAGGTGTCTTCCTaGACATATAGCAGAAGCTTC | + |
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Preference number: 4 (lower is better) Translates to: KRPGSICFVVRPMSQYVYDQVSS*TYSRSF Trigger: GAAGCTTCTGCTATATGTGCAGGAAGACACCTGGTC...GTACACATATTGGGACATTGGCCTTACTACAAAGCAAATAGAACCAGGTCTCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS-3UTR GCA 90 bp | CCTGGTTCTATTTGCTTTGTAGTAAGGCCAATGTCCCAATATGTGTACAAAGGGGAAGTGATCTGGGTTTaGTTTTGCTCTCTGCAGAAC | + |
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Preference number: 4 (lower is better) Translates to: PGSICFVVRPMSQYVYKGEVIWV*FCSLQN Trigger: GTTCTGCAGAGAGCAAAAGCAAACCCAGATCACTTC...CCCTTTGTACACATATTGGGACATTGGCCTTACTACAAAGCAAATAGAACCAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS-3UTR GCA 90 bp | ACAAAAGAGACCTGGTTCTATTTGCTTTGTAGTAAGGCCAATGTCCCAATATGTATCTGGGTTTGCTTTTaGTCTCTGCAGAACAGAGTC | + |
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Preference number: 4 (lower is better) Translates to: TKETWFYLLCSKANVPICIWVCF*SLQNRV Trigger: GACTCTGTTCTGCAGAGAGCAAAAGCAAACCCAGAT...ACATATTGGGACATTGGCCTTACTACAAAGCAAATAGAACCAGGTCTCTTTTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS-3UTR GCA 90 bp | AGACCTGGTTCTATTTGCTTTGTAGTAAGGCCAATGTCCCAATATGTGTACAAAATCTGGGTTTGCTTTTaGTCTCTGCAGAACAGAGTC | + |
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Preference number: 4 (lower is better) Translates to: RPGSICFVVRPMSQYVYKIWVCF*SLQNRV Trigger: GACTCTGTTCTGCAGAGAGCAAAAGCAAACCCAGAT...TTTGTACACATATTGGGACATTGGCCTTACTACAAAGCAAATAGAACCAGGTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS CCA 90 bp | CGCACCTCTGGGCATGGCAGGGCCAGACGCCCCACCATCGCCTCCTaGTCTCGCAAGCTGCAGATGAGGCCTCCCGGGACAGCAGTGACC | + |
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Preference number: 5 (lower is better) Translates to: RTSGHGRARRPTIAS*SRKLQMRPPGTAVT Trigger: GGTCACTGCTGTCCCGGGAGGCCTCATCTGCAGCTTGCGAGACCAGGAGGCGATGGTGGGGCGTCTGGCCCTGCCATGCCCAGAGGTGCG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS TCA 90 bp | CAGTTGGCTGGCCGAGTTGCTGAAGCGGCAGAACCCACTAGCCTCTaGGGACATAGGCGCACCTCTGGGCATGGCAGGGCCAGACGCCCC | + |
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Preference number: 5 (lower is better) Translates to: QLAGRVAEAAEPTSL*GHRRTSGHGRARRP Trigger: GGGGCGTCTGGCCCTGCCATGCCCAGAGGTGCGCCTATGTCCTCAGAGGCTAGTGGGTTCTGCCGCTTCAGCAACTCGGCCAGCCAACTG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS TCA 90 bp | GCCTCAGTGCAGGACATTCTGGGTACAGAGGTGGAGGGACAAGGCTaGTCCGCGCACGGGCATCCGCATGCGACATCCACCGGAGCTGCC | + |
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Preference number: 5 (lower is better) Translates to: ASVQDILGTEVEGQG*SAHGHPHATSTGAA Trigger: GGCAGCTCCGGTGGATGTCGCATGCGGATGCCCGTGCGCGGATCAGCCTTGTCCCTCCACCTCTGTACCCAGAATGTCCTGCACTGAGGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239443.2 |
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| CDS GCA 90 bp | TACAGAGGTGGAGGGACAAGGCTGATCCGCGCACGGGCATCCGCATaGGACATCCACCGGAGCTGCCAGGACTTGCATGGGTTCCGGTCC | + |
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Preference number: 5 (lower is better) Translates to: YRGGGTRLIRARASA*DIHRSCQDLHGFRS Trigger: GGACCGGAACCCATGCAAGTCCTGGCAGCTCCGGTGGATGTCGCATGCGGATGCCCGTGCGCGGATCAGCCTTGTCCCTCCACCTCTGTA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239443.2 |
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| CDS-3UTR CAA 90 bp | ACTGTGAGGTCTGGGGGAGGAGGGAACCTTGGCAGCACTGGGCCTGTAGGGATCAGTTGGCTGGCCGAGTaGCTGAAGCGGCAGAACCCA | + |
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Preference number: 5 (lower is better) Translates to: TVRSGGGGNLGSTGPVGISWLAE*LKRQNP Trigger: TGGGTTCTGCCGCTTCAGCAACTCGGCCAGCCAACT...GATCCCTACAGGCCCAGTGCTGCCAAGGTTCCCTCCTCCCCCAGACCTCACAGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS-3UTR CAA 90 bp | CCACCACCCTTGAGTCACTCATTCAGGGGGTGTCTCCTCTCTTTCCCCCTTTCCAGTTGGCTGGCCGAGTaGCTGAAGCGGCAGAACCCA | + |
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Preference number: 5 (lower is better) Translates to: PPPLSHSFRGCLLSFPLSSWLAE*LKRQNP Trigger: TGGGTTCTGCCGCTTCAGCAACTCGGCCAGCCAACT...GGAAAGGGGGAAAGAGAGGAGACACCCCCTGAATGAGTGACTCAAGGGTGGTGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS GCA 90 bp | GTGACCTTTCGGCACAGCGGACAGGGGATGGACCAGGTGTCTTCCTaGACATATAGCAGAAGCTTCAGGCATACGGCACAGAAGGTGTGC | + |
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Preference number: 5 (lower is better) Translates to: VTFRHSGQGMDQVSS*TYSRSFRHTAQKVC Trigger: GCACACCTTCTGTGCCGTATGCCTGAAGCTTCTGCTATATGTGCAGGAAGACACCTGGTCCATCCCCTGTCCGCTGTGCCGAAAGGTCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS TCA 90 bp | CCAACAAGAGCAAGTGTACAGCCAGGCGCCGGGCAGCTACACGGTTaGCACTTACAGTGTCCTGTTCTTCTTCTCCTGTCCAGTTGGCTG | + |
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Preference number: 5 (lower is better) Translates to: PTRASVQPGAGQLHG*HLQCPVLLLLSSWL Trigger: CAGCCAACTGGACAGGAGAAGAAGAACAGGACACTGTAAGTGTCAACCGTGTAGCTGCCCGGCGCCTGGCTGTACACTTGCTCTTGTTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS-3UTR CAA 90 bp | ATGCAGACTGTGAGGTCTGGGGGAGGAGGGAACCTTGGCAGCACTGGGCCTGTAGATCTGGGTTTGCTTTaGCTCTCTGCAGAACAGAGT | + |
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Preference number: 5 (lower is better) Translates to: MQTVRSGGGGNLGSTGPVDLGLL*LSAEQS Trigger: ACTCTGTTCTGCAGAGAGCAAAAGCAAACCCAGATC...TACAGGCCCAGTGCTGCCAAGGTTCCCTCCTCCCCCAGACCTCACAGTCTGCAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS-3UTR CAA 90 bp | ACAAAAGAGACCTGGTTCTATTTGCTTTGTAGTAAGGCCAATGTCCCAATATGTGATCTGGGTTTGCTTTaGCTCTCTGCAGAACAGAGT | + |
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Preference number: 5 (lower is better) Translates to: TKETWFYLLCSKANVPICDLGLL*LSAEQS Trigger: ACTCTGTTCTGCAGAGAGCAAAAGCAAACCCAGATC...ACATATTGGGACATTGGCCTTACTACAAAGCAAATAGAACCAGGTCTCTTTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS-3UTR CAA 90 bp | AAGAGACCTGGTTCTATTTGCTTTGTAGTAAGGCCAATGTCCCAATATGTGTACAGAAGTGATCTGGGTTaGCTTTTGCTCTCTGCAGAA | + |
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Preference number: 5 (lower is better) Translates to: KRPGSICFVVRPMSQYVYRSDLG*LLLSAE Trigger: TTCTGCAGAGAGCAAAAGCAAACCCAGATCACTTCT...GTACACATATTGGGACATTGGCCTTACTACAAAGCAAATAGAACCAGGTCTCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS TCA 72 bp | GGCCGAGTTGCTGAAGCGGCAGAACCCACTAGCCTCTaGGGACATAGGCGCACCTCTGGGCATGGCAGGGCC | + |
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Preference number: 6 (lower is better) Translates to: GRVAEAAEPTSL*GHRRTSGHGRA Trigger: GGCCCTGCCATGCCCAGAGGTGCGCCTATGTCCTCAGAGGCTAGTGGGTTCTGCCGCTTCAGCAACTCGGCC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS CCA 72 bp | CGCATGCGACATCCACCGGAGCTGCCAGGACTTGCATaGGTTCCGGTCCTGTGGGGACGCTTCCAGTCTCCC | + |
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Preference number: 6 (lower is better) Translates to: RMRHPPELPGLA*VPVLWGRFQSP Trigger: GGGAGACTGGAAGCGTCCCCACAGGACCGGAACCCATGCAAGTCCTGGCAGCTCCGGTGGATGTCGCATGCG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239443.2 |
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| CDS CCA 72 bp | GTGGGGCCTCAGTGCAGGACATTCTGGGTACAGAGGTaGAGGGACAAGGCTGATCCGCGCACGGGCATCCGC | + |
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Preference number: 6 (lower is better) Translates to: VGPQCRTFWVQR*RDKADPRTGIR Trigger: GCGGATGCCCGTGCGCGGATCAGCCTTGTCCCTCCACCTCTGTACCCAGAATGTCCTGCACTGAGGCCCCAC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239443.2 |
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| CDS GCA 72 bp | CATCCGCATGCGACATCCACCGGAGCTGCCAGGACTTaGATGGGTTCCGGTCCTGTGGGGACGCTTCCAGTC | + |
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Preference number: 6 (lower is better) Translates to: HPHATSTGAART*MGSGPVGTLPV Trigger: GACTGGAAGCGTCCCCACAGGACCGGAACCCATGCAAGTCCTGGCAGCTCCGGTGGATGTCGCATGCGGATG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239443.2 |
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| CDS CAA 72 bp | GCATCCGCATGCGACATCCACCGGAGCTGCCAGGACTaGCATGGGTTCCGGTCCTGTGGGGACGCTTCCAGT | + |
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Preference number: 6 (lower is better) Translates to: ASACDIHRSCQD*HGFRSCGDASS Trigger: ACTGGAAGCGTCCCCACAGGACCGGAACCCATGCAAGTCCTGGCAGCTCCGGTGGATGTCGCATGCGGATGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239443.2 |
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| CDS TCA 72 bp | CAGGACATTCTGGGTACAGAGGTGGAGGGACAAGGCTaGTCCGCGCACGGGCATCCGCATGCGACATCCACC | + |
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Preference number: 6 (lower is better) Translates to: QDILGTEVEGQG*SAHGHPHATST Trigger: GGTGGATGTCGCATGCGGATGCCCGTGCGCGGATCAGCCTTGTCCCTCCACCTCTGTACCCAGAATGTCCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239443.2 |
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| CDS GCA 72 bp | GTTCCGGTCCTGTGGGGACGCTTCCAGTCTCCCTTCTaGTCTCTGCGGGTACCTGCTGACAACCGATGTCTG | + |
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Preference number: 6 (lower is better) Translates to: VPVLWGRFQSPF*SLRVPADNRCL Trigger: CAGACATCGGTTGTCAGCAGGTACCCGCAGAGAGCAGAAGGGAGACTGGAAGCGTCCCCACAGGACCGGAAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239443.2 |
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| CDS GCA 72 bp | CGGCACAGCGGACAGGGGATGGACCAGGTGTCTTCCTaGACATATAGCAGAAGCTTCAGGCATACGGCACAG | + |
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Preference number: 6 (lower is better) Translates to: RHSGQGMDQVSS*TYSRSFRHTAQ Trigger: CTGTGCCGTATGCCTGAAGCTTCTGCTATATGTGCAGGAAGACACCTGGTCCATCCCCTGTCCGCTGTGCCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS TCA 72 bp | AGCAGAAGCTTCAGGCATACGGCACAGAAGGTGTGCTaGCAGCTAAGCAGCTTGGGGGACCGAGCACAGTTG | + |
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Preference number: 6 (lower is better) Translates to: SRSFRHTAQKVC*QLSSLGDRAQL Trigger: CAACTGTGCTCGGTCCCCCAAGCTGCTTAGCTGTCAGCACACCTTCTGTGCCGTATGCCTGAAGCTTCTGCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS CAA 90 bp | TTACAGTGTCCTGTTCTTCTTCTCCTGTCCAGTTGGCTGGCCGAGTaGCTGAAGCGGCAGAACCCACTAGCCTCTGAGGACATAGGCGCA | + |
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Preference number: 6 (lower is better) Translates to: LQCPVLLLLSSWLAE*LKRQNPLASEDIGA Trigger: TGCGCCTATGTCCTCAGAGGCTAGTGGGTTCTGCCGCTTCAGCAACTCGGCCAGCCAACTGGACAGGAGAAGAAGAACAGGACACTGTAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS CAA 90 bp | GCCAACAAGAGCAAGTGTACAGCCAGGCGCCGGGCAGCTACACGGTaGACACTTACAGTGTCCTGTTCTTCTTCTCCTGTCCAGTTGGCT | + |
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Preference number: 6 (lower is better) Translates to: ANKSKCTARRRAATR*TLTVSCSSSPVQLA Trigger: AGCCAACTGGACAGGAGAAGAAGAACAGGACACTGTAAGTGTCAACCGTGTAGCTGCCCGGCGCCTGGCTGTACACTTGCTCTTGTTGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS CCA 72 bp | TCTGGGTTTGCTTTTGCTCTCTGCAGAACAGAGTCCTaGGGCAAAGCCAGTTGCTGTTCTGGCTCTGGGGGT | + |
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Preference number: 6 (lower is better) Translates to: SGFAFALCRTES*GKASCCSGSGG Trigger: ACCCCCAGAGCCAGAACAGCAACTGGCTTTGCCCCAGGACTCTGTTCTGCAGAGAGCAAAAGCAAACCCAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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| CDS CAA 72 bp | ACACTTACAGTGTCCTGTTCTTCTTCTCCTGTCCAGTaGGCTGGCCGAGTTGCTGAAGCGGCAGAACCCACT | + |
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Preference number: 6 (lower is better) Translates to: TLTVSCSSSPVQ*AGRVAEAAEPT Trigger: AGTGGGTTCTGCCGCTTCAGCAACTCGGCCAGCCAACTGGACAGGAGAAGAAGAACAGGACACTGTAAGTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000116094.5 ENSMUST00000239443.2 |
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