Pregenerated sensors for RNF183 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000063851Ensembl transcript IDs: ENSMUST00000079420.7, ENSMUST00000107454.2, ENSMUST00000107455.8
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTCTCTCAACTAGTTGGATGTCTGGGTGGTGCTGTCCAGCCCTTTTaGCACAACTTGCTATGTAGCCATAGAACTGCTTCTCTACCCTCC | + |
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Preference number: 1 (lower is better) Translates to: LSQLVGCLGGAVQPF*HNLLCSHRTASLPS Trigger: GGAGGGTAGAGAAGCAGTTCTATGGCTACATAGCAAGTTGTGCCAAAAGGGCTGGACAGCACCACCCAGACATCCAACTAGTTGAGAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| 3UTR TCA 90 bp | TCAGGAAAGGCTGAAAGGGGAGACAAGCACGTGGGCCCACAGAATTaGAACACTTTCCAGAATTATCAGCAACACACAAACAGCTCAACA | + |
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Preference number: 1 (lower is better) Translates to: SGKAERGDKHVGPQN*NTFQNYQQHTNSST Trigger: TGTTGAGCTGTTTGTGTGTTGCTGATAATTCTGGAAAGTGTTTCAATTCTGTGGGCCCACGTGCTTGTCTCCCCTTTCAGCCTTTCCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| 3UTR CCA 90 bp | AACTGTGGCAAGAATCAGGAAAGGCTGAAAGGGGAGACAAGCACGTaGGCCCACAGAATTGAAACACTTTCCAGAATTATCAGCAACACA | + |
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Preference number: 1 (lower is better) Translates to: NCGKNQERLKGETST*AHRIETLSRIISNT Trigger: TGTGTTGCTGATAATTCTGGAAAGTGTTTCAATTCTGTGGGCCCACGTGCTTGTCTCCCCTTTCAGCCTTTCCTGATTCTTGCCACAGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| 3UTR GCA 90 bp | GAAACACTTTCCAGAATTATCAGCAACACACAAACAGCTCAACACTaGTCCAGTGAAAGAGGCTCCGAGCTCTCTCAACTAGTTGGATGT | + |
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Preference number: 1 (lower is better) Translates to: ETLSRIISNTQTAQH*SSERGSELSQLVGC Trigger: ACATCCAACTAGTTGAGAGAGCTCGGAGCCTCTTTCACTGGAGCAGTGTTGAGCTGTTTGTGTGTTGCTGATAATTCTGGAAAGTGTTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| 3UTR CAA 90 bp | CTAGTTGGATGTCTGGGTGGTGCTGTCCAGCCCTTTTGGCACAACTaGCTATGTAGCCATAGAACTGCTTCTCTACCCTCCATGACCCCG | + |
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Preference number: 2 (lower is better) Translates to: LVGCLGGAVQPFWHN*LCSHRTASLPSMTP Trigger: CGGGGTCATGGAGGGTAGAGAAGCAGTTCTATGGCTACATAGCAAGTTGTGCCAAAAGGGCTGGACAGCACCACCCAGACATCCAACTAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| 3UTR-3UTR TCA 90 bp | AGGCTGAAAGGGGAGACAAGCACGTGGGCCCACAGAATTGAAACACTTTCCAGACGGTCCAGCAACCACTaGGAAAGGCTCTGTTCCTTG | + |
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Preference number: 2 (lower is better) Translates to: RLKGETSTWAHRIETLSRRSSNH*ERLCSL Trigger: CAAGGAACAGAGCCTTTCTCAGTGGTTGCTGGACCG...TCTGGAAAGTGTTTCAATTCTGTGGGCCCACGTGCTTGTCTCCCCTTTCAGCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| 3UTR-3UTR CCA 90 bp | GGCAAGAATCAGGAAAGGCTGAAAGGGGAGACAAGCACGTGGGCCCACAGAATTAGTTGGATGTCTGGGTaGTGCTGTCCAGCCCTTTTG | + |
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Preference number: 2 (lower is better) Translates to: GKNQERLKGETSTWAHRISWMSG*CCPALL Trigger: CAAAAGGGCTGGACAGCACCACCCAGACATCCAACT...AATTCTGTGGGCCCACGTGCTTGTCTCCCCTTTCAGCCTTTCCTGATTCTTGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| 3UTR-3UTR TCA 90 bp | CTGTCCAGCCCTTTTGGCACAACTTGCTATGTAGCCATAGAACTGCTTCTCTACCGGTCCAGCAACCACTaGGAAAGGCTCTGTTCCTTG | + |
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Preference number: 2 (lower is better) Translates to: LSSPFGTTCYVAIELLLYRSSNH*ERLCSL Trigger: CAAGGAACAGAGCCTTTCTCAGTGGTTGCTGGACCG...GTAGAGAAGCAGTTCTATGGCTACATAGCAAGTTGTGCCAAAAGGGCTGGACAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| 3UTR-3UTR CCA 90 bp | GGTGGTGCTGTCCAGCCCTTTTGGCACAACTTGCTATGTAGCCATAGAACTGCTCTCTTCTCTTCCTGTTaGGCCGTCTCTGTTCTCCAA | + |
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Preference number: 2 (lower is better) Translates to: GGAVQPFWHNLLCSHRTALFSSC*AVSVLQ Trigger: TTGGAGAACAGAGACGGCCCAACAGGAAGAGAAGAG...AGCAGTTCTATGGCTACATAGCAAGTTGTGCCAAAAGGGCTGGACAGCACCACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| 3UTR GCA 72 bp | GTCTGGGTGGTGCTGTCCAGCCCTTTTGGCACAACTTaGTATGTAGCCATAGAACTGCTTCTCTACCCTCCA | + |
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Preference number: 3 (lower is better) Translates to: VWVVLSSPFGTT*YVAIELLLYPP Trigger: TGGAGGGTAGAGAAGCAGTTCTATGGCTACATAGCAAGTTGTGCCAAAAGGGCTGGACAGCACCACCCAGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| 3UTR TCA 72 bp | CAAAGGATTCGCAATAGTCCTCGGTCCAGCAACCACTaGGAAAGGCTCTGTTCCTTGTCCTGGAACACAGAG | + |
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Preference number: 3 (lower is better) Translates to: QRIRNSPRSSNH*ERLCSLSWNTE Trigger: CTCTGTGTTCCAGGACAAGGAACAGAGCCTTTCTCAGTGGTTGCTGGACCGAGGACTATTGCGAATCCTTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| 3UTR CCA 72 bp | CTAGTTGGATGTCTGGGTGGTGCTGTCCAGCCCTTTTaGCACAACTTGCTATGTAGCCATAGAACTGCTTCT | + |
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Preference number: 3 (lower is better) Translates to: LVGCLGGAVQPF*HNLLCSHRTAS Trigger: AGAAGCAGTTCTATGGCTACATAGCAAGTTGTGCCAAAAGGGCTGGACAGCACCACCCAGACATCCAACTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| 3UTR TCA 72 bp | GCTGAAAGGGGAGACAAGCACGTGGGCCCACAGAATTaGAACACTTTCCAGAATTATCAGCAACACACAAAC | + |
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Preference number: 3 (lower is better) Translates to: AERGDKHVGPQN*NTFQNYQQHTN Trigger: GTTTGTGTGTTGCTGATAATTCTGGAAAGTGTTTCAATTCTGTGGGCCCACGTGCTTGTCTCCCCTTTCAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| 3UTR GCA 72 bp | TCCAGAATTATCAGCAACACACAAACAGCTCAACACTaGTCCAGTGAAAGAGGCTCCGAGCTCTCTCAACTA | + |
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Preference number: 3 (lower is better) Translates to: SRIISNTQTAQH*SSERGSELSQL Trigger: TAGTTGAGAGAGCTCGGAGCCTCTTTCACTGGAGCAGTGTTGAGCTGTTTGTGTGTTGCTGATAATTCTGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| 3UTR-3UTR CAA 90 bp | CAAGCACGTGGGCCCACAGAATTGAAACACTTTCCAGAATTATCAGCAACACACCCCTTTTGGCACAACTaGCTATGTAGCCATAGAACT | + |
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Preference number: 3 (lower is better) Translates to: QARGPTELKHFPELSATHPFWHN*LCSHRT Trigger: AGTTCTATGGCTACATAGCAAGTTGTGCCAAAAGGG...GTGTGTTGCTGATAATTCTGGAAAGTGTTTCAATTCTGTGGGCCCACGTGCTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| 3UTR CCA 72 bp | AAGAATCAGGAAAGGCTGAAAGGGGAGACAAGCACGTaGGCCCACAGAATTGAAACACTTTCCAGAATTATC | + |
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Preference number: 3 (lower is better) Translates to: KNQERLKGETST*AHRIETLSRII Trigger: GATAATTCTGGAAAGTGTTTCAATTCTGTGGGCCCACGTGCTTGTCTCCCCTTTCAGCCTTTCCTGATTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| CDS-3UTR TCA 90 bp | CTCCGAGCTCTCTCAACTAGTTGGATGTCTGGGTGGTGCTGTCCAGCCCTTTTGCAGGGCACTCGGCTCTaGGCTCCTGGCCCTGTGGTT | + |
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Preference number: 4 (lower is better) Translates to: LRALSTSWMSGWCCPALLQGTRL*APGPVV Trigger: AACCACAGGGCCAGGAGCTCAGAGCCGAGTGCCCTG...CAAAAGGGCTGGACAGCACCACCCAGACATCCAACTAGTTGAGAGAGCTCGGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| CDS-3UTR CCA 90 bp | CTCCGAGCTCTCTCAACTAGTTGGATGTCTGGGTGGTGCTGTCCAGCCCTTTTGCAAGCGGCGCCTGGCTaGGGTTACCAGGCTGAGGTG | + |
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Preference number: 4 (lower is better) Translates to: LRALSTSWMSGWCCPALLQAAPG*GYQAEV Trigger: CACCTCAGCCTGGTAACCCCAGCCAGGCGCCGCTTG...CAAAAGGGCTGGACAGCACCACCCAGACATCCAACTAGTTGAGAGAGCTCGGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| CDS-3UTR TCA 90 bp | CCCTGGTCCTTTAGCTCTTCTCTTCCTGTTGGGCCGTCTCTGTTCTCCAAGATAGCCAGCACGGTGGGCTaGCGACAGAGTGGGCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: PWSFSSSLPVGPSLFSKIASTVG*RQSGQS Trigger: GCTCTGCCCACTCTGTCGTCAGCCCACCGTGCTGGC...TATCTTGGAGAACAGAGACGGCCCAACAGGAAGAGAAGAGCTAAAGGACCAGGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| CDS-3UTR GCA 90 bp | CTGTGGCAAGAATCAGGAAAGGCTGAAAGGGGAGACAAGCACGTGGGCCCACAGAAGTCAGTGACTGGCTaGCCTGAAGCCAGCACGGTG | + |
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Preference number: 4 (lower is better) Translates to: LWQESGKAERGDKHVGPQKSVTG*PEASTV Trigger: CACCGTGCTGGCTTCAGGGCAGCCAGTCACTGACTT...CTGTGGGCCCACGTGCTTGTCTCCCCTTTCAGCCTTTCCTGATTCTTGCCACAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| CDS-3UTR CCA 90 bp | GGTGGTGCTGTCCAGCCCTTTTGGCACAACTTGCTATGTAGCCATAGAACTGCTCAAGCGGCGCCTGGCTaGGGTTACCAGGCTGAGGTG | + |
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Preference number: 4 (lower is better) Translates to: GGAVQPFWHNLLCSHRTAQAAPG*GYQAEV Trigger: CACCTCAGCCTGGTAACCCCAGCCAGGCGCCGCTTG...AGCAGTTCTATGGCTACATAGCAAGTTGTGCCAAAAGGGCTGGACAGCACCACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| CDS-3UTR TCA 90 bp | CCCTGGTCCTTTAGCTCTTCTCTTCCTGTTGGGCCGTCTCTGTTCTCCAAGATACTGGGGTTACCAGGCTaGGGTGGGCCAGGCATTCCA | + |
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Preference number: 4 (lower is better) Translates to: PWSFSSSLPVGPSLFSKILGLPG*GGPGIP Trigger: TGGAATGCCTGGCCCACCTCAGCCTGGTAACCCCAG...TATCTTGGAGAACAGAGACGGCCCAACAGGAAGAGAAGAGCTAAAGGACCAGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| CDS-3UTR TCA 90 bp | CTGTCCAGCCCTTTTGGCACAACTTGCTATGTAGCCATAGAACTGCTTCTCTACGCCAGCACGGTGGGCTaGCGACAGAGTGGGCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: LSSPFGTTCYVAIELLLYASTVG*RQSGQS Trigger: GCTCTGCCCACTCTGTCGTCAGCCCACCGTGCTGGC...GTAGAGAAGCAGTTCTATGGCTACATAGCAAGTTGTGCCAAAAGGGCTGGACAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| CDS-3UTR CCA 90 bp | CCCTGGTCCTTTAGCTCTTCTCTTCCTGTTGGGCCGTCTCTGTTCTCCAAGATACTGAAGCCAGCACGGTaGGCTGACGACAGAGTGGGC | + |
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Preference number: 4 (lower is better) Translates to: PWSFSSSLPVGPSLFSKILKPAR*ADDRVG Trigger: GCCCACTCTGTCGTCAGCCCACCGTGCTGGCTTCAG...TATCTTGGAGAACAGAGACGGCCCAACAGGAAGAGAAGAGCTAAAGGACCAGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| CDS-3UTR TCA 90 bp | CTGTCCAGCCCTTTTGGCACAACTTGCTATGTAGCCATAGAACTGCTTCTCTACCAGGGCACTCGGCTCTaGGCTCCTGGCCCTGTGGTT | + |
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Preference number: 4 (lower is better) Translates to: LSSPFGTTCYVAIELLLYQGTRL*APGPVV Trigger: AACCACAGGGCCAGGAGCTCAGAGCCGAGTGCCCTG...GTAGAGAAGCAGTTCTATGGCTACATAGCAAGTTGTGCCAAAAGGGCTGGACAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| CDS-3UTR TCA 90 bp | CCCTGGTCCTTTAGCTCTTCTCTTCCTGTTGGGCCGTCTCTGTTCTCCAAGATATCTTGGGCTGGTCCTTaGGACAGAGCTGGTGGCCCT | + |
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Preference number: 4 (lower is better) Translates to: PWSFSSSLPVGPSLFSKISWAGP*DRAGGP Trigger: AGGGCCACCAGCTCTGTCTCAAGGACCAGCCCAAGA...TATCTTGGAGAACAGAGACGGCCCAACAGGAAGAGAAGAGCTAAAGGACCAGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| CDS-3UTR TCA 90 bp | GATAGACCTAGCAGACCCCTGGGCTGTAAAATGAGCAAGAACGGTAACACCAAATCAGGGGCTGTGTCCTaGGGGAGCCCAGTCTGGCTC | + |
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Preference number: 4 (lower is better) Translates to: DRPSRPLGCKMSKNGNTKSGAVS*GSPVWL Trigger: GAGCCAGACTGGGCTCCCTCAGGACACAGCCCCTGA...TTTGGTGTTACCGTTCTTGCTCATTTTACAGCCCAGGGGTCTGCTAGGTCTATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| CDS-3UTR CCA 90 bp | TGGGTGGTGCTGTCCAGCCCTTTTGGCACAACTTGCTATGTAGCCATAGAACTGAGTAGTGACTGGGGATaGGCACCGGCCTGGTGTCAG | + |
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Preference number: 4 (lower is better) Translates to: WVVLSSPFGTTCYVAIELSSDWG*APAWCQ Trigger: CTGACACCAGGCCGGTGCCCATCCCCAGTCACTACT...CAGTTCTATGGCTACATAGCAAGTTGTGCCAAAAGGGCTGGACAGCACCACCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| CDS-3UTR TCA 90 bp | CAAGCACGTGGGCCCACAGAATTGAAACACTTTCCAGAATTATCAGCAACACACTCAGGGGCTGTGTCCTaGGGGAGCCCAGTCTGGCTC | + |
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Preference number: 4 (lower is better) Translates to: QARGPTELKHFPELSATHSGAVS*GSPVWL Trigger: GAGCCAGACTGGGCTCCCTCAGGACACAGCCCCTGA...GTGTGTTGCTGATAATTCTGGAAAGTGTTTCAATTCTGTGGGCCCACGTGCTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| CDS-3UTR CCA 90 bp | GTTCTCCAAGATAGACCTAGCAGACCCCTGGGCTGTAAAATGAGCAAGAACGGTGTTACCAGGCTGAGGTaGGCCAGGCATTCCACACAG | + |
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Preference number: 4 (lower is better) Translates to: VLQDRPSRPLGCKMSKNGVTRLR*ARHSTQ Trigger: CTGTGTGGAATGCCTGGCCCACCTCAGCCTGGTAAC...ACCGTTCTTGCTCATTTTACAGCCCAGGGGTCTGCTAGGTCTATCTTGGAGAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| CDS-3UTR CCA 90 bp | GTTCTCCAAGATAGACCTAGCAGACCCCTGGGCTGTAAAATGAGCAAGAACGGTTCTAGGATGACATGGTaGGGCTCTAGGCGGAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: VLQDRPSRPLGCKMSKNGSRMTW*GSRRSR Trigger: CCTGCTCCGCCTAGAGCCCCACCATGTCATCCTAGA...ACCGTTCTTGCTCATTTTACAGCCCAGGGGTCTGCTAGGTCTATCTTGGAGAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| 3UTR CAA 72 bp | TGTCTGGGTGGTGCTGTCCAGCCCTTTTGGCACAACTaGCTATGTAGCCATAGAACTGCTTCTCTACCCTCC | + |
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Preference number: 4 (lower is better) Translates to: CLGGAVQPFWHN*LCSHRTASLPS Trigger: GGAGGGTAGAGAAGCAGTTCTATGGCTACATAGCAAGTTGTGCCAAAAGGGCTGGACAGCACCACCCAGACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| CDS-3UTR TCA 90 bp | AAGGGGAGACAAGCACGTGGGCCCACAGAATTGAAACACTTTCCAGAATTATCATCTTGGGCTGGTCCTTaGGACAGAGCTGGTGGCCCT | + |
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Preference number: 4 (lower is better) Translates to: KGRQARGPTELKHFPELSSWAGP*DRAGGP Trigger: AGGGCCACCAGCTCTGTCTCAAGGACCAGCCCAAGA...TGATAATTCTGGAAAGTGTTTCAATTCTGTGGGCCCACGTGCTTGTCTCCCCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| CDS-3UTR CCA 90 bp | CAAGCACGTGGGCCCACAGAATTGAAACACTTTCCAGAATTATCAGCAACACACAGTAGTGACTGGGGATaGGCACCGGCCTGGTGTCAG | + |
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Preference number: 4 (lower is better) Translates to: QARGPTELKHFPELSATHSSDWG*APAWCQ Trigger: CTGACACCAGGCCGGTGCCCATCCCCAGTCACTACT...GTGTGTTGCTGATAATTCTGGAAAGTGTTTCAATTCTGTGGGCCCACGTGCTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| CDS-3UTR TCA 90 bp | CTCTCTCAACTAGTTGGATGTCTGGGTGGTGCTGTCCAGCCCTTTTGGCACAACTGTGGAATGTGTTGTTaGAAGGGTTCCAGCAGACAG | + |
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Preference number: 4 (lower is better) Translates to: LSQLVGCLGGAVQPFWHNCGMCC*KGSSRQ Trigger: CTGTCTGCTGGAACCCTTTCAACAACACATTCCACA...GTTGTGCCAAAAGGGCTGGACAGCACCACCCAGACATCCAACTAGTTGAGAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| CDS-3UTR CCA 90 bp | CAAGCACGTGGGCCCACAGAATTGAAACACTTTCCAGAATTATCAGCAACACACGTTACCAGGCTGAGGTaGGCCAGGCATTCCACACAG | + |
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Preference number: 4 (lower is better) Translates to: QARGPTELKHFPELSATHVTRLR*ARHSTQ Trigger: CTGTGTGGAATGCCTGGCCCACCTCAGCCTGGTAAC...GTGTGTTGCTGATAATTCTGGAAAGTGTTTCAATTCTGTGGGCCCACGTGCTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| CDS-3UTR TCA 90 bp | AAGGGGAGACAAGCACGTGGGCCCACAGAATTGAAACACTTTCCAGAATTATCATGTGGAATGTGTTGTTaGAAGGGTTCCAGCAGACAG | + |
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Preference number: 4 (lower is better) Translates to: KGRQARGPTELKHFPELSCGMCC*KGSSRQ Trigger: CTGTCTGCTGGAACCCTTTCAACAACACATTCCACA...TGATAATTCTGGAAAGTGTTTCAATTCTGTGGGCCCACGTGCTTGTCTCCCCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| CDS-3UTR GCA 90 bp | ACAGAATTGAAACACTTTCCAGAATTATCAGCAACACACAAACAGCTCAACACTAAGTCAGTGACTGGCTaGCCTGAAGCCAGCACGGTG | + |
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Preference number: 4 (lower is better) Translates to: TELKHFPELSATHKQLNTKSVTG*PEASTV Trigger: CACCGTGCTGGCTTCAGGGCAGCCAGTCACTGACTT...AGTGTTGAGCTGTTTGTGTGTTGCTGATAATTCTGGAAAGTGTTTCAATTCTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| CDS-3UTR CCA 90 bp | ACAGAATTGAAACACTTTCCAGAATTATCAGCAACACACAAACAGCTCAACACTTCTAGGATGACATGGTaGGGCTCTAGGCGGAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: TELKHFPELSATHKQLNTSRMTW*GSRRSR Trigger: CCTGCTCCGCCTAGAGCCCCACCATGTCATCCTAGA...AGTGTTGAGCTGTTTGTGTGTTGCTGATAATTCTGGAAAGTGTTTCAATTCTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| CDS-3UTR CCA 90 bp | ACAGAATTGAAACACTTTCCAGAATTATCAGCAACACACAAACAGCTCAACACTTTGAGACAGAGCTGGTaGCCCTCTAGGATGACATGG | + |
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Preference number: 4 (lower is better) Translates to: TELKHFPELSATHKQLNTLRQSW*PSRMTW Trigger: CCATGTCATCCTAGAGGGCCACCAGCTCTGTCTCAA...AGTGTTGAGCTGTTTGTGTGTTGCTGATAATTCTGGAAAGTGTTTCAATTCTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| CDS TCA 90 bp | GACAGAGTGGGCAGAGCAAGCGGCGCCTGGCTGGGGTTACCAGGCTaGGGTGGGCCAGGCATTCCACACAGAAGGAGTGACAGCAGTCTA | + |
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Preference number: 5 (lower is better) Translates to: DRVGRASGAWLGLPG*GGPGIPHRRSDSSL Trigger: TAGACTGCTGTCACTCCTTCTGTGTGGAATGCCTGGCCCACCTCAGCCTGGTAACCCCAGCCAGGCGCCGCTTGCTCTGCCCACTCTGTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000079420.7 ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| CDS TCA 90 bp | GGTCAGCATGGCAGTGTCTGTAGGCAAGTCAGTGACTGGCTGCCCTaGAGCCAGCACGGTGGGCTGACGACAGAGTGGGCAGAGCAAGCG | + |
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Preference number: 5 (lower is better) Translates to: GQHGSVCRQVSDWLP*SQHGGLTTEWAEQA Trigger: CGCTTGCTCTGCCCACTCTGTCGTCAGCCCACCGTGCTGGCTTCAGGGCAGCCAGTCACTGACTTGCCTACAGACACTGCCATGCTGACC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000079420.7 ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| CDS TCA 90 bp | TCAGATAGGCGAAGATCCGGAAGTGAGGGTTGCGGACACACTCTCTaGGAGAGTAGTGACTGGGGATGGGCACCGGCCTGGTGTCAGGGG | + |
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Preference number: 5 (lower is better) Translates to: SDRRRSGSEGCGHTL*ESSDWGWAPAWCQG Trigger: CCCCTGACACCAGGCCGGTGCCCATCCCCAGTCACTACTCTCTCAGAGAGTGTGTCCGCAACCCTCACTTCCGGATCTTCGCCTATCTGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000079420.7 ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| CDS-3UTR CAA 90 bp | GGTGGTGCTGTCCAGCCCTTTTGGCACAACTTGCTATGTAGCCATAGAACTGCTGGGGTGTGGAATGTGTaGTTGAAAGGGTTCCAGCAG | + |
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Preference number: 5 (lower is better) Translates to: GGAVQPFWHNLLCSHRTAGVWNV*LKGFQQ Trigger: CTGCTGGAACCCTTTCAACAACACATTCCACACCCC...AGCAGTTCTATGGCTACATAGCAAGTTGTGCCAAAAGGGCTGGACAGCACCACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| CDS-3UTR CAA 90 bp | GTTCTCCAAGATAGACCTAGCAGACCCCTGGGCTGTAAAATGAGCAAGAACGGTGGGGTGTGGAATGTGTaGTTGAAAGGGTTCCAGCAG | + |
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Preference number: 5 (lower is better) Translates to: VLQDRPSRPLGCKMSKNGGVWNV*LKGFQQ Trigger: CTGCTGGAACCCTTTCAACAACACATTCCACACCCC...ACCGTTCTTGCTCATTTTACAGCCCAGGGGTCTGCTAGGTCTATCTTGGAGAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| CDS TCA 72 bp | GGCAGAGCAAGCGGCGCCTGGCTGGGGTTACCAGGCTaGGGTGGGCCAGGCATTCCACACAGAAGGAGTGAC | + |
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Preference number: 6 (lower is better) Translates to: GRASGAWLGLPG*GGPGIPHRRSD Trigger: GTCACTCCTTCTGTGTGGAATGCCTGGCCCACCTCAGCCTGGTAACCCCAGCCAGGCGCCGCTTGCTCTGCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000079420.7 ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| CDS TCA 72 bp | GGCAGTGTCTGTAGGCAAGTCAGTGACTGGCTGCCCTaGAGCCAGCACGGTGGGCTGACGACAGAGTGGGCA | + |
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Preference number: 6 (lower is better) Translates to: GSVCRQVSDWLP*SQHGGLTTEWA Trigger: TGCCCACTCTGTCGTCAGCCCACCGTGCTGGCTTCAGGGCAGCCAGTCACTGACTTGCCTACAGACACTGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000079420.7 ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| CDS TCA 72 bp | CGAAGATCCGGAAGTGAGGGTTGCGGACACACTCTCTaGGAGAGTAGTGACTGGGGATGGGCACCGGCCTGG | + |
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Preference number: 6 (lower is better) Translates to: RRSGSEGCGHTL*ESSDWGWAPAW Trigger: CCAGGCCGGTGCCCATCCCCAGTCACTACTCTCTCAGAGAGTGTGTCCGCAACCCTCACTTCCGGATCTTCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000079420.7 ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| CDS CCA 72 bp | TCCTTGAGACAGAGCTGGTGGCCCTCTAGGATGACATaGTGGGGCTCTAGGCGGAGCAGGGTCAGCATGGCA | + |
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Preference number: 6 (lower is better) Translates to: SLRQSWWPSRMT*WGSRRSRVSMA Trigger: TGCCATGCTGACCCTGCTCCGCCTAGAGCCCCACCATGTCATCCTAGAGGGCCACCAGCTCTGTCTCAAGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000079420.7 ENSMUST00000107454.2 ENSMUST00000107455.8 |
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| CDS TCA 72 bp | AGGCTGAGGTGGGCCAGGCATTCCACACAGAAGGAGTaGCAGCAGTCTAGCACTTTGGGGGTGTGGAATGTG | + |
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Preference number: 6 (lower is better) Translates to: RLRWARHSTQKE*QQSSTLGVWNV Trigger: CACATTCCACACCCCCAAAGTGCTAGACTGCTGTCACTCCTTCTGTGTGGAATGCCTGGCCCACCTCAGCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000079420.7 ENSMUST00000107454.2 ENSMUST00000107455.8 |
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