RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RNF17 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000000365

Ensembl transcript IDs: ENSMUST00000095793.3, ENSMUST00000223627.2, ENSMUST00000225737.2

Found 174 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CATCATTCATCTTTATCTGCAAGCCCCATTTCTACCAAGGACATGTaGACTGGGTATTGTTCATCTTCATATAATGTCACTATTTGTTCT +
Preference number: 1 (lower is better)
Translates to: HHSSLSASPISTKDM*TGYCSSSYNVTICS
Trigger: AGAACAAATAGTGACATTATATGAAGATGAACAATACCCAGTTCACATGTCCTTGGTAGAAATGGGGCTTGCAGATAAAGATGAATGATG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225737.2
3UTR-3UTR CCA 90 bp GACAGCTGCAGGAGCTCTTGTGCACATCATTCATCTTTATCTGCAAGCCCCATTCTTCCATGCTCCATTTaGGACAGTATGGTATTCTTG +
Preference number: 2 (lower is better)
Translates to: DSCRSSCAHHSSLSASPILPCSI*DSMVFL
Trigger: CAAGAATACCATACTGTCCCAAATGGAGCATGGAAG...AATGGGGCTTGCAGATAAAGATGAATGATGTGCACAAGAGCTCCTGCAGCTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225737.2
3UTR-3UTR CCA 90 bp ACAGCTGCAGGAGCTCTTGTGCACATCATTCATCTTTATCTGCAAGCCCCATTTTGTCACTATTTGTTCTaGTGCCTGAGCCACAGAAGA +
Preference number: 2 (lower is better)
Translates to: TAAGALVHIIHLYLQAPFCHYLF*CLSHRR
Trigger: TCTTCTGTGGCTCAGGCACCAGAACAAATAGTGACA...AAATGGGGCTTGCAGATAAAGATGAATGATGTGCACAAGAGCTCCTGCAGCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225737.2
3UTR-3UTR GCA 90 bp ACATCATTCATCTTTATCTGCAAGCCCCATTTCTACCAAGGACATGTGAACTGGTCCACAAGGCTTCCATaGTCCATTTGGGACAGTATG +
Preference number: 2 (lower is better)
Translates to: TSFIFICKPHFYQGHVNWSTRLP*SIWDSM
Trigger: CATACTGTCCCAAATGGAGCATGGAAGCCTTGTGGA...CCAGTTCACATGTCCTTGGTAGAAATGGGGCTTGCAGATAAAGATGAATGATGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225737.2
3UTR-3UTR CCA 90 bp TCTTGTGCACATCATTCATCTTTATCTGCAAGCCCCATTTCTACCAAGGACATGCCATTTGGGACAGTATaGTATTCTTGTTTTTCCCGA +
Preference number: 2 (lower is better)
Translates to: SCAHHSSLSASPISTKDMPFGTV*YSCFSR
Trigger: TCGGGAAAAACAAGAATACCATACTGTCCCAAATGG...CATGTCCTTGGTAGAAATGGGGCTTGCAGATAAAGATGAATGATGTGCACAAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225737.2
3UTR-3UTR CCA 90 bp ATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACAGACAAGGACATGTGAACTaGGTATTGTTCATCTTCATA +
Preference number: 2 (lower is better)
Translates to: IPLQNKLKSNLKWYKSNRQGHVN*VLFIFI
Trigger: TATGAAGATGAACAATACCCAGTTCACATGTCCTTG...TCTGTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225737.2
3UTR-3UTR CAA 90 bp TGGACAGCTGCAGGAGCTCTTGTGCACATCATTCATCTTTATCTGCAAGCCCCAGCTTCCATGCTCCATTaGGGACAGTATGGTATTCTT +
Preference number: 3 (lower is better)
Translates to: WTAAGALVHIIHLYLQAPASMLH*GQYGIL
Trigger: AAGAATACCATACTGTCCCAAATGGAGCATGGAAGC...TGGGGCTTGCAGATAAAGATGAATGATGTGCACAAGAGCTCCTGCAGCTGTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225737.2
3UTR TCA 72 bp TCTTTATCTGCAAGCCCCATTTCTACCAAGGACATGTaGACTGGGTATTGTTCATCTTCATATAATGTCACT +
Preference number: 3 (lower is better)
Translates to: SLSASPISTKDM*TGYCSSSYNVT
Trigger: AGTGACATTATATGAAGATGAACAATACCCAGTTCACATGTCCTTGGTAGAAATGGGGCTTGCAGATAAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225737.2
CDS-3UTR CCA 90 bp TGCACATCATTCATCTTTATCTGCAAGCCCCATTTCTACCAAGGACATGTGAACAGCACCTTTATGGCTTaGGCTGGGTACTGCATAAGC +
Preference number: 4 (lower is better)
Translates to: CTSFIFICKPHFYQGHVNSTFMA*AGYCIS
Trigger: GCTTATGCAGTACCCAGCCCAAGCCATAAAGGTGCT...GTTCACATGTCCTTGGTAGAAATGGGGCTTGCAGATAAAGATGAATGATGTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225737.2
CDS-3UTR TCA 90 bp CCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACAGAAAATTACTCTCCACTAGGTaGCAGGAAGCCAGCCCGGTC +
Preference number: 4 (lower is better)
Translates to: PLQNKLKSNLKWYKSNRKLLSTR*QEASPV
Trigger: GACCGGGCTGGCTTCCTGTCACCTAGTGGAGAGTAA...TTTTCTGTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR TCA 90 bp CTTTTATTGGCACTAATAGTTCATAATCAGAATGTGTTTGTCAAGGCTAACTGGTTACTCTCCACTAGGTaGCAGGAAGCCAGCCCGGTC +
Preference number: 4 (lower is better)
Translates to: LLLALIVHNQNVFVKANWLLSTR*QEASPV
Trigger: GACCGGGCTGGCTTCCTGTCACCTAGTGGAGAGTAA...CCAGTTAGCCTTGACAAACACATTCTGATTATGAACTATTAGTGCCAATAAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223627.2
3UTR CAA 72 bp TGCCTGAGCCACAGAAGAAGCATAAAGTTGTTTTCCTaGGAGACAGTCTATCATAGTCCACAAGGCTTCCAT +
Preference number: 4 (lower is better)
Translates to: CLSHRRSIKLFS*ETVYHSPQGFH
Trigger: ATGGAAGCCTTGTGGACTATGATAGACTGTCTCCAAGGAAAACAACTTTATGCTTCTTCTGTGGCTCAGGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225737.2
CDS-3UTR TCA 90 bp CTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACTTGCTATGGCTCCAGTaGGGTGCAGTGACAGACAGT +
Preference number: 4 (lower is better)
Translates to: LIPLQNKLKSNLKWYKSNLLWLQ*GAVTDS
Trigger: ACTGTCTGTCACTGCACCTCACTGGAGCCATAGCAA...GTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR TCA 90 bp CTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACGTCCACCTCTCTCTTTaGAAGCAGCTCCTGAAGCAG +
Preference number: 4 (lower is better)
Translates to: LIPLQNKLKSNLKWYKSNVHLSL*KQLLKQ
Trigger: CTGCTTCAGGAGCTGCTTTCAAAGAGAGAGGTGGAC...GTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR TCA 90 bp CCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACAGAAAAACTCTGACTCCCAGCTaGCTCCACTGTCATCCGTGT +
Preference number: 4 (lower is better)
Translates to: PLQNKLKSNLKWYKSNRKTLTPS*LHCHPC
Trigger: ACACGGATGACAGTGGAGTCAGCTGGGAGTCAGAGT...TTTTCTGTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR TCA 90 bp AAAACTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTCCAGTGAGGTGCAGTaGCAGACAGTCACAAGCTGT +
Preference number: 4 (lower is better)
Translates to: KTDTTAEQVKIKPEVVQISSEVQ*QTVTSC
Trigger: ACAGCTTGTGACTGTCTGTCACTGCACCTCACTGGA...GATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAGTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR GCA 90 bp CTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACGGGAGGTTTAAACCCTaGCAAGAGCACCTTTATGGC +
Preference number: 4 (lower is better)
Translates to: LIPLQNKLKSNLKWYKSNGRFKP*QEHLYG
Trigger: GCCATAAAGGTGCTCTTGGCAGGGTTTAAACCTCCC...GTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CCA 90 bp AAAACTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCCAGCTCTATGGCATCTaGCTGCCAGGTATTCCCAAC +
Preference number: 4 (lower is better)
Translates to: KTDTTAEQVKIKPEVVQIQLYGI*LPGIPN
Trigger: GTTGGGAATACCTGGCAGCCAGATGCCATAGAGCTG...GATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAGTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CCA 90 bp CCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACAGAAAACCTGAAGCAGCTCTATaGCATCTGGCTGCCAGGTAT +
Preference number: 4 (lower is better)
Translates to: PLQNKLKSNLKWYKSNRKPEAAL*HLAARY
Trigger: ATACCTGGCAGCCAGATGCCATAGAGCTGCTTCAGG...TTTTCTGTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR TCA 90 bp AAACTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTTCTTTCCCATACTGCTaGACATGCAGATGGCCTCAC +
Preference number: 4 (lower is better)
Translates to: KLIPLQNKLKSNLKWYKSSFPYC*TCRWPH
Trigger: GTGAGGCCATCTGCATGTTCAGCAGTATGGGAAAGA...AGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR TCA 90 bp TTACAAATATTTTCAGTTATGGAAGCTGAGGCTTATGGCAACTTTTATTGGCACTCTTTCCCATACTGCTaGACATGCAGATGGCCTCAC +
Preference number: 4 (lower is better)
Translates to: LQIFSVMEAEAYGNFYWHSFPYC*TCRWPH
Trigger: GTGAGGCCATCTGCATGTTCAGCAGTATGGGAAAGA...GTGCCAATAAAAGTTGCCATAAGCCTCAGCTTCCATAACTGAAAATATTTGTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223627.2
CDS-3UTR TCA 90 bp ATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACAGATGGACAACCTGCTTTTaGTCCAACAGGAGCAGACTG +
Preference number: 4 (lower is better)
Translates to: IPLQNKLKSNLKWYKSNRWTTCF*SNRSRL
Trigger: CAGTCTGCTCCTGTTGGATCAAAAGCAGGTTGTCCA...TCTGTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR TCA 90 bp TTACAAATATTTTCAGTTATGGAAGCTGAGGCTTATGGCAACTTTTATTGGCACTGGACAACCTGCTTTTaGTCCAACAGGAGCAGACTG +
Preference number: 4 (lower is better)
Translates to: LQIFSVMEAEAYGNFYWHWTTCF*SNRSRL
Trigger: CAGTCTGCTCCTGTTGGATCAAAAGCAGGTTGTCCA...GTGCCAATAAAAGTTGCCATAAGCCTCAGCTTCCATAACTGAAAATATTTGTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000223627.2
CDS-3UTR TCA 90 bp AACTTTTCACCACACCATTCCTTAACAATTTACCAAGTAAGACTAAAGGAGGAATTCCCAGCCCTCAGTTaGATTGTATGGGACGATGTC +
Preference number: 4 (lower is better)
Translates to: NFSPHHSLTIYQVRLKEEFPALS*IVWDDV
Trigger: GACATCGTCCCATACAATTCAACTGAGGGCTGGGAA...TTCCTCCTTTAGTCTTACTTGGTAAATTGTTAAGGAATGGTGTGGTGAAAAGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR TCA 90 bp AAAACTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCAACAGGCTTCCATTCTaGGTGCTCATACGCTGCTAC +
Preference number: 4 (lower is better)
Translates to: KTDTTAEQVKIKPEVVQINRLPF*VLIRCY
Trigger: GTAGCAGCGTATGAGCACTCAGAATGGAAGCCTGTT...GATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAGTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR TCA 90 bp AAACTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTTGGCCTCTTCGCCACTaGTTTTTAGCTGGGACCTTA +
Preference number: 4 (lower is better)
Translates to: KLIPLQNKLKSNLKWYKSWPLRH*FLAGTL
Trigger: TAAGGTCCCAGCTAAAAATCAGTGGCGAAGAGGCCA...AGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAGTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR TCA 90 bp AAAACTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCGCACTTAGTAACTACTaGATCTCCTTGCTCCAGGGG +
Preference number: 4 (lower is better)
Translates to: KTDTTAEQVKIKPEVVQIALSNY*ISLLQG
Trigger: CCCCTGGAGCAAGGAGATTCAGTAGTTACTAAGTGC...GATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAGTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR GCA 90 bp AACTTTTCACCACACCATTCCTTAACAATTTACCAAGTAAGACTAAAGGAGGAATGCTGTTCACCATCATaGTCTGGTCCCTCATGTGTG +
Preference number: 4 (lower is better)
Translates to: NFSPHHSLTIYQVRLKEECCSPS*SGPSCV
Trigger: CACACATGAGGGACCAGAGCATGATGGTGAACAGCA...TTCCTCCTTTAGTCTTACTTGGTAAATTGTTAAGGAATGGTGTGGTGAAAAGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR GCA 90 bp TTACAAATATTTTCAGTTATGGAAGCTGAGGCTTATGGCAACTTTTATTGGCACTGCTGTTCACCATCATaGTCTGGTCCCTCATGTGTG +
Preference number: 4 (lower is better)
Translates to: LQIFSVMEAEAYGNFYWHCCSPS*SGPSCV
Trigger: CACACATGAGGGACCAGAGCATGATGGTGAACAGCA...GTGCCAATAAAAGTTGCCATAAGCCTCAGCTTCCATAACTGAAAATATTTGTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223627.2
CDS-3UTR GCA 90 bp AACTTTTCACCACACCATTCCTTAACAATTTACCAAGTAAGACTAAAGGAGGAAGGCTTCCATTCTGAGTaGTCATACGCTGCTACCATC +
Preference number: 4 (lower is better)
Translates to: NFSPHHSLTIYQVRLKEEGFHSE*SYAATI
Trigger: GATGGTAGCAGCGTATGAGCACTCAGAATGGAAGCC...TTCCTCCTTTAGTCTTACTTGGTAAATTGTTAAGGAATGGTGTGGTGAAAAGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR GCA 90 bp AACTTTTCACCACACCATTCCTTAACAATTTACCAAGTAAGACTAAAGGAGGAAATGGCTCCAGTGAGGTaGAGTGACAGACAGTCACAA +
Preference number: 4 (lower is better)
Translates to: NFSPHHSLTIYQVRLKEEMAPVR*SDRQSQ
Trigger: TTGTGACTGTCTGTCACTGCACCTCACTGGAGCCAT...TTCCTCCTTTAGTCTTACTTGGTAAATTGTTAAGGAATGGTGTGGTGAAAAGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR GCA 90 bp AAACTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTTCCGGTGAGACAATGTaGTTCACTTGCACGGCAAAC +
Preference number: 4 (lower is better)
Translates to: KLIPLQNKLKSNLKWYKSSGETM*FTCTAN
Trigger: GTTTGCCGTGCAAGTGAAGCACATTGTCTCACCGGA...AGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095793.3
ENSMUST00000225737.2
CDS-3UTR GCA 90 bp CCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACAGAAAATCCGGTGAGACAATGTaGTTCACTTGCACGGCAAAC +
Preference number: 4 (lower is better)
Translates to: PLQNKLKSNLKWYKSNRKSGETM*FTCTAN
Trigger: GTTTGCCGTGCAAGTGAAGCACATTGTCTCACCGGA...TTTTCTGTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095793.3
ENSMUST00000225737.2
CDS-3UTR CCA 90 bp AAAACTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCAGCACCTTTATGGCTTaGGCTGGGTACTGCATAAGC +
Preference number: 4 (lower is better)
Translates to: KTDTTAEQVKIKPEVVQISTFMA*AGYCIS
Trigger: GCTTATGCAGTACCCAGCCCAAGCCATAAAGGTGCT...GATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAGTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095793.3
ENSMUST00000225737.2
CDS-3UTR TCA 90 bp AAAACTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTTTGAAAGCAGCTCCTaGAGCAGCTCTATGGCATCT +
Preference number: 4 (lower is better)
Translates to: KTDTTAEQVKIKPEVVQIFESSS*SSSMAS
Trigger: AGATGCCATAGAGCTGCTTCAGGAGCTGCTTTCAAA...GATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAGTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR GCA 90 bp AAAACTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTTTTTCCCTTCTAAATaGCTGTCAGGGGCCTCTGCT +
Preference number: 4 (lower is better)
Translates to: KTDTTAEQVKIKPEVVQIFFPSK*LSGASA
Trigger: AGCAGAGGCCCCTGACAGGCATTTAGAAGGGAAAAA...GATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAGTTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR GCA 90 bp TTACAAATATTTTCAGTTATGGAAGCTGAGGCTTATGGCAACTTTTATTGGCACTTTTTCCCTTCTAAATaGCTGTCAGGGGCCTCTGCT +
Preference number: 4 (lower is better)
Translates to: LQIFSVMEAEAYGNFYWHFFPSK*LSGASA
Trigger: AGCAGAGGCCCCTGACAGGCATTTAGAAGGGAAAAA...GTGCCAATAAAAGTTGCCATAAGCCTCAGCTTCCATAACTGAAAATATTTGTAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000223627.2
CDS-3UTR GCA 90 bp AAAACTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCACAGTCACAAGCTGTTaGTGTCCACTTGTCACTTCC +
Preference number: 4 (lower is better)
Translates to: KTDTTAEQVKIKPEVVQITVTSC*CPLVTS
Trigger: GGAAGTGACAAGTGGACAGCAACAGCTTGTGACTGT...GATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAGTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR GCA 90 bp CTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACTTCTTGTTAAATCTCTaGAGCGCTTCCTCCAGGTTC +
Preference number: 4 (lower is better)
Translates to: LIPLQNKLKSNLKWYKSNFLLNL*SASSRF
Trigger: GAACCTGGAGGAAGCGCTGCAGAGATTTAACAAGAA...GTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR GCA 90 bp CCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACAGAAAATCCACAAGGCTTCCATaGTCCATTTGGGACAGTATG +
Preference number: 4 (lower is better)
Translates to: PLQNKLKSNLKWYKSNRKSTRLP*SIWDSM
Trigger: CATACTGTCCCAAATGGAGCATGGAAGCCTTGTGGA...TTTTCTGTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CCA 90 bp AACTTTTCACCACACCATTCCTTAACAATTTACCAAGTAAGACTAAAGGAGGAATTATCACATCAGGGCTaGATCCCAGTTGAGGCAGTA +
Preference number: 4 (lower is better)
Translates to: NFSPHHSLTIYQVRLKEELSHQG*IPVEAV
Trigger: TACTGCCTCAACTGGGATCCAGCCCTGATGTGATAA...TTCCTCCTTTAGTCTTACTTGGTAAATTGTTAAGGAATGGTGTGGTGAAAAGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CCA 90 bp TTACAAATATTTTCAGTTATGGAAGCTGAGGCTTATGGCAACTTTTATTGGCACTTATCACATCAGGGCTaGATCCCAGTTGAGGCAGTA +
Preference number: 4 (lower is better)
Translates to: LQIFSVMEAEAYGNFYWHLSHQG*IPVEAV
Trigger: TACTGCCTCAACTGGGATCCAGCCCTGATGTGATAA...GTGCCAATAAAAGTTGCCATAAGCCTCAGCTTCCATAACTGAAAATATTTGTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223627.2
CDS-3UTR CCA 90 bp CCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACAGAAAACCACTGATTTTTAGCTaGGACCTTAACAGCGCAGTG +
Preference number: 4 (lower is better)
Translates to: PLQNKLKSNLKWYKSNRKPLIFS*DLNSAV
Trigger: CACTGCGCTGTTAAGGTCCCAGCTAAAAATCAGTGG...TTTTCTGTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR TCA 90 bp ATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACAGACTTGTGGTATATTCTTaGGGTGCTAACAGGCACAGT +
Preference number: 4 (lower is better)
Translates to: IPLQNKLKSNLKWYKSNRLVVYS*GANRHS
Trigger: ACTGTGCCTGTTAGCACCTCAAGAATATACCACAAG...TCTGTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR TCA 90 bp CTTTTATTGGCACTAATAGTTCATAATCAGAATGTGTTTGTCAAGGCTAACTGGCTTGTGGTATATTCTTaGGGTGCTAACAGGCACAGT +
Preference number: 4 (lower is better)
Translates to: LLLALIVHNQNVFVKANWLVVYS*GANRHS
Trigger: ACTGTGCCTGTTAGCACCTCAAGAATATACCACAAG...CCAGTTAGCCTTGACAAACACATTCTGATTATGAACTATTAGTGCCAATAAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223627.2
CDS-3UTR TCA 90 bp CCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACAGAAAAGACCTTGATTCATGCTaGCAGTTGTATGAACCTCAC +
Preference number: 4 (lower is better)
Translates to: PLQNKLKSNLKWYKSNRKDLDSC*QLYEPH
Trigger: GTGAGGTTCATACAACTGTCAGCATGAATCAAGGTC...TTTTCTGTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR TCA 90 bp AAAACTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCAAACCAATGCATCTCTaGGAGACACAGGCATATCAC +
Preference number: 4 (lower is better)
Translates to: KTDTTAEQVKIKPEVVQIKPMHL*ETQAYH
Trigger: GTGATATGCCTGTGTCTCTCAGAGATGCATTGGTTT...GATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAGTTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR TCA 90 bp AAAACTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCCACTATTGCCTCAAATaGACTCGTGTTAGGAACAGC +
Preference number: 4 (lower is better)
Translates to: KTDTTAEQVKIKPEVVQIHYCLK*TRVRNS
Trigger: GCTGTTCCTAACACGAGTTCATTTGAGGCAATAGTG...GATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAGTTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR TCA 90 bp AACTTTTCACCACACCATTCCTTAACAATTTACCAAGTAAGACTAAAGGAGGAATTCTCAGTGAACCCATaGTCTAAATACTGGACCCTG +
Preference number: 4 (lower is better)
Translates to: NFSPHHSLTIYQVRLKEEFSVNP*SKYWTL
Trigger: CAGGGTCCAGTATTTAGATCATGGGTTCACTGAGAA...TTCCTCCTTTAGTCTTACTTGGTAAATTGTTAAGGAATGGTGTGGTGAAAAGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR TCA 90 bp CCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACAGAAAAAGACAACTTCCCCCATaGATTGTTGGGCAATTCCAT +
Preference number: 4 (lower is better)
Translates to: PLQNKLKSNLKWYKSNRKRQLPP*IVGQFH
Trigger: ATGGAATTGCCCAACAATTCATGGGGGAAGTTGTCT...TTTTCTGTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR TCA 90 bp CTTTTATTGGCACTAATAGTTCATAATCAGAATGTGTTTGTCAAGGCTAACTGGAAACTCCACAGCCTTTaGGGGAGAATCACTTTCTCT +
Preference number: 4 (lower is better)
Translates to: LLLALIVHNQNVFVKANWKLHSL*GRITFS
Trigger: AGAGAAAGTGATTCTCCCTCAAAGGCTGTGGAGTTT...CCAGTTAGCCTTGACAAACACATTCTGATTATGAACTATTAGTGCCAATAAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223627.2
CDS-3UTR GCA 90 bp AACTTTTCACCACACCATTCCTTAACAATTTACCAAGTAAGACTAAAGGAGGAAACTACTGAATCTCCTTaGTCCAGGGGTATTTCCAGA +
Preference number: 4 (lower is better)
Translates to: NFSPHHSLTIYQVRLKEETTESP*SRGISR
Trigger: TCTGGAAATACCCCTGGAGCAAGGAGATTCAGTAGT...TTCCTCCTTTAGTCTTACTTGGTAAATTGTTAAGGAATGGTGTGGTGAAAAGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR GCA 90 bp AAACTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTATCAGATCCTCTCACTaGACAAGGCTCTCCCTTTTT +
Preference number: 4 (lower is better)
Translates to: KLIPLQNKLKSNLKWYKSIRSSH*TRLSLF
Trigger: AAAAAGGGAGAGCCTTGTGCAGTGAGAGGATCTGAT...AGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAGTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CCA 90 bp CTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACCCCTCTTTCACGAGCTaGTCATTAATACTAACAGCA +
Preference number: 4 (lower is better)
Translates to: LIPLQNKLKSNLKWYKSNPSFTS*SLILTA
Trigger: TGCTGTTAGTATTAATGACCAGCTCGTGAAAGAGGG...GTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CCA 90 bp CTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACCTTCCATGCTCCATTTaGGACAGTATGGTATTCTTG +
Preference number: 4 (lower is better)
Translates to: LIPLQNKLKSNLKWYKSNLPCSI*DSMVFL
Trigger: CAAGAATACCATACTGTCCCAAATGGAGCATGGAAG...GTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CCA 90 bp AAACTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTTGTCACTATTTGTTCTaGTGCCTGAGCCACAGAAGA +
Preference number: 4 (lower is better)
Translates to: KLIPLQNKLKSNLKWYKSCHYLF*CLSHRR
Trigger: TCTTCTGTGGCTCAGGCACCAGAACAAATAGTGACA...AGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAGTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR TCA 90 bp AAACTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTGTCTCTTGTCTTGTTTaGTCTTGTGTGCTATCAAGC +
Preference number: 4 (lower is better)
Translates to: KLIPLQNKLKSNLKWYKSVSCLV*SCVLSS
Trigger: GCTTGATAGCACACAAGATCAAACAAGACAAGAGAC...AGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAGTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR TCA 90 bp TTACAAATATTTTCAGTTATGGAAGCTGAGGCTTATGGCAACTTTTATTGGCACGTCTCTTGTCTTGTTTaGTCTTGTGTGCTATCAAGC +
Preference number: 4 (lower is better)
Translates to: LQIFSVMEAEAYGNFYWHVSCLV*SCVLSS
Trigger: GCTTGATAGCACACAAGATCAAACAAGACAAGAGAC...GTGCCAATAAAAGTTGCCATAAGCCTCAGCTTCCATAACTGAAAATATTTGTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223627.2
CDS-3UTR TCA 90 bp AAAACTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCGAGAAGGAGCAGATCTaGGTTCTTTTGCTATCTTCA +
Preference number: 4 (lower is better)
Translates to: KTDTTAEQVKIKPEVVQIEKEQI*VLLLSS
Trigger: TGAAGATAGCAAAAGAACTCAGATCTGCTCCTTCTC...GATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAGTTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR TCA 90 bp CTTTTATTGGCACTAATAGTTCATAATCAGAATGTGTTTGTCAAGGCTAACTGGGAGAAGGAGCAGATCTaGGTTCTTTTGCTATCTTCA +
Preference number: 4 (lower is better)
Translates to: LLLALIVHNQNVFVKANWEKEQI*VLLLSS
Trigger: TGAAGATAGCAAAAGAACTCAGATCTGCTCCTTCTC...CCAGTTAGCCTTGACAAACACATTCTGATTATGAACTATTAGTGCCAATAAAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223627.2
CDS-3UTR GCA 90 bp CCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACAGAAAACAGCTTACATTTAATTaGCTTCTCTGGGGGTTCCAA +
Preference number: 4 (lower is better)
Translates to: PLQNKLKSNLKWYKSNRKQLTFN*LLWGFQ
Trigger: TTGGAACCCCCAGAGAAGGCAATTAAATGTAAGCTG...TTTTCTGTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR GCA 90 bp AAAACTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCGTCTATAGCATCCGGTaGTTCTGCTTTCTGATTTCT +
Preference number: 4 (lower is better)
Translates to: KTDTTAEQVKIKPEVVQIVYSIR*FCFLIS
Trigger: AGAAATCAGAAAGCAGAAGCACCGGATGCTATAGAC...GATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAGTTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CCA 90 bp AAAACTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCCCTAGGGGTGTTCCTTaGAATTATGGAACTAACTTG +
Preference number: 4 (lower is better)
Translates to: KTDTTAEQVKIKPEVVQIPRGVP*NYGTNL
Trigger: CAAGTTAGTTCCATAATTCCAAGGAACACCCCTAGG...GATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAGTTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CCA 90 bp AAACTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTCTTTTTCCAGGAATATaGCTCCAAAAGACCAAGGCA +
Preference number: 4 (lower is better)
Translates to: KLIPLQNKLKSNLKWYKSLFPGI*LQKTKA
Trigger: TGCCTTGGTCTTTTGGAGCCATATTCCTGGAAAAAG...AGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAGTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR TCA 90 bp CCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACAGAAAACAGGCATATCACTGCTaGTTTTATTTGTTGGTGGTT +
Preference number: 4 (lower is better)
Translates to: PLQNKLKSNLKWYKSNRKQAYHC*FYLLVV
Trigger: AACCACCAACAAATAAAATCAGCAGTGATATGCCTG...TTTTCTGTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR TCA 90 bp AAACTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTGTGGAATCTTCTCAGTaGACCCATGATCTAAATACT +
Preference number: 4 (lower is better)
Translates to: KLIPLQNKLKSNLKWYKSVESSQ*THDLNT
Trigger: AGTATTTAGATCATGGGTTCACTGAGAAGATTCCAC...AGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAGTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR GCA 90 bp ATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACAGAGCCTGCTATCTTCAGTaGTTCATCAATTTCTTCTGT +
Preference number: 4 (lower is better)
Translates to: IPLQNKLKSNLKWYKSNRACYLQ*FINFFC
Trigger: ACAGAAGAAATTGATGAAGCACTGAAGATAGCAGGC...TCTGTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR GCA 90 bp TTACAAATATTTTCAGTTATGGAAGCTGAGGCTTATGGCAACTTTTATTGGCACGCCTGCTATCTTCAGTaGTTCATCAATTTCTTCTGT +
Preference number: 4 (lower is better)
Translates to: LQIFSVMEAEAYGNFYWHACYLQ*FINFFC
Trigger: ACAGAAGAAATTGATGAAGCACTGAAGATAGCAGGC...GTGCCAATAAAAGTTGCCATAAGCCTCAGCTTCCATAACTGAAAATATTTGTAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223627.2
CDS-3UTR GCA 90 bp AACTTTTCACCACACCATTCCTTAACAATTTACCAAGTAAGACTAAAGGAGGAAGGTGTAAGCTCCTATTaGAAACTTGCTTCATCTTCT +
Preference number: 4 (lower is better)
Translates to: NFSPHHSLTIYQVRLKEEGVSSY*KLASSS
Trigger: AGAAGATGAAGCAAGTTTGCAATAGGAGCTTACACC...TTCCTCCTTTAGTCTTACTTGGTAAATTGTTAAGGAATGGTGTGGTGAAAAGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR GCA 90 bp CTTTTATTGGCACTAATAGTTCATAATCAGAATGTGTTTGTCAAGGCTAACTGGGGTGTAAGCTCCTATTaGAAACTTGCTTCATCTTCT +
Preference number: 4 (lower is better)
Translates to: LLLALIVHNQNVFVKANWGVSSY*KLASSS
Trigger: AGAAGATGAAGCAAGTTTGCAATAGGAGCTTACACC...CCAGTTAGCCTTGACAAACACATTCTGATTATGAACTATTAGTGCCAATAAAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223627.2
CDS-3UTR GCA 90 bp AAACTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTTTCCATAAAAACCAATaGATCTCTGAGAGACACAGG +
Preference number: 4 (lower is better)
Translates to: KLIPLQNKLKSNLKWYKSFHKNQ*ISERHR
Trigger: CCTGTGTCTCTCAGAGATGCATTGGTTTTTATGGAA...AGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAGTTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CCA 90 bp AACTTTTCACCACACCATTCCTTAACAATTTACCAAGTAAGACTAAAGGAGGAACACAGACTGAGAATTTaGTTGGACTACATGGTTTTC +
Preference number: 4 (lower is better)
Translates to: NFSPHHSLTIYQVRLKEEHRLRI*LDYMVF
Trigger: GAAAACCATGTAGTCCAACCAAATTCTCAGTCTGTG...TTCCTCCTTTAGTCTTACTTGGTAAATTGTTAAGGAATGGTGTGGTGAAAAGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CCA 90 bp TTACAAATATTTTCAGTTATGGAAGCTGAGGCTTATGGCAACTTTTATTGGCACCACAGACTGAGAATTTaGTTGGACTACATGGTTTTC +
Preference number: 4 (lower is better)
Translates to: LQIFSVMEAEAYGNFYWHHRLRI*LDYMVF
Trigger: GAAAACCATGTAGTCCAACCAAATTCTCAGTCTGTG...GTGCCAATAAAAGTTGCCATAAGCCTCAGCTTCCATAACTGAAAATATTTGTAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000223627.2
CDS-3UTR CCA 90 bp AAAACTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTTTAATTGCCTTCTCTaGGGGTTCCAAAAACTCATC +
Preference number: 4 (lower is better)
Translates to: KTDTTAEQVKIKPEVVQIFNCLL*GFQKLI
Trigger: GATGAGTTTTTGGAACCCCCAGAGAAGGCAATTAAA...GATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAGTTTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CCA 90 bp CTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACGACTTCTCAGGTGAATaGCTGTTACTTGATTTACTA +
Preference number: 4 (lower is better)
Translates to: LIPLQNKLKSNLKWYKSNDFSGE*LLLDLL
Trigger: TAGTAAATCAAGTAACAGCCATTCACCTGAGAAGTC...GTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CCA 90 bp ATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACAGAATACAGATGACATTGTaGAATCTTCTCAGTGAACCC +
Preference number: 4 (lower is better)
Translates to: IPLQNKLKSNLKWYKSNRIQMTL*NLLSEP
Trigger: GGGTTCACTGAGAAGATTCCACAATGTCATCTGTAT...TCTGTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CCA 90 bp AACTTTTCACCACACCATTCCTTAACAATTTACCAAGTAAGACTAAAGGAGGAACCATTTGGGACAGTATaGTATTCTTGTTTTTCCCGA +
Preference number: 4 (lower is better)
Translates to: NFSPHHSLTIYQVRLKEEPFGTV*YSCFSR
Trigger: TCGGGAAAAACAAGAATACCATACTGTCCCAAATGG...TTCCTCCTTTAGTCTTACTTGGTAAATTGTTAAGGAATGGTGTGGTGAAAAGTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR TCA 90 bp ATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACAGATTATATGGCAAACCATaGCTGAAACTTCAGTCATCT +
Preference number: 4 (lower is better)
Translates to: IPLQNKLKSNLKWYKSNRLYGKP*LKLQSS
Trigger: AGATGACTGAAGTTTCAGTCATGGTTTGCCATATAA...TCTGTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR TCA 90 bp CCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACAGAAAACTCCTTGTTATACAATaGCTGGAAATTCTCATTAGG +
Preference number: 4 (lower is better)
Translates to: PLQNKLKSNLKWYKSNRKLLVIQ*LEILIR
Trigger: CCTAATGAGAATTTCCAGTCATTGTATAACAAGGAG...TTTTCTGTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR GCA 90 bp AAACTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTGAACCTCACAGTCAGTaGATTTACTTGTGGTATATT +
Preference number: 4 (lower is better)
Translates to: KLIPLQNKLKSNLKWYKSEPHSQ*IYLWYI
Trigger: AATATACCACAAGTAAATGCACTGACTGTGAGGTTC...AGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAGTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR GCA 90 bp TTACAAATATTTTCAGTTATGGAAGCTGAGGCTTATGGCAACTTTTATTGGCACGAACCTCACAGTCAGTaGATTTACTTGTGGTATATT +
Preference number: 4 (lower is better)
Translates to: LQIFSVMEAEAYGNFYWHEPHSQ*IYLWYI
Trigger: AATATACCACAAGTAAATGCACTGACTGTGAGGTTC...GTGCCAATAAAAGTTGCCATAAGCCTCAGCTTCCATAACTGAAAATATTTGTAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223627.2
CDS-3UTR GCA 90 bp AAACTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTTTCAAAATTACAGCCTaGTATCTTCAGTGCTTCATC +
Preference number: 4 (lower is better)
Translates to: KLIPLQNKLKSNLKWYKSFKITA*YLQCFI
Trigger: GATGAAGCACTGAAGATAGCAGGCTGTAATTTTGAA...AGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAGTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR GCA 90 bp AAAACTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCAGATCTGAGTTCTTTTaGTATCTTCATAGCTGCATC +
Preference number: 4 (lower is better)
Translates to: KTDTTAEQVKIKPEVVQIRSEFF*YLHSCI
Trigger: GATGCAGCTATGAAGATAGCAAAAGAACTCAGATCT...GATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAGTTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR GCA 90 bp CTTTTATTGGCACTAATAGTTCATAATCAGAATGTGTTTGTCAAGGCTAACTGGAGATCTGAGTTCTTTTaGTATCTTCATAGCTGCATC +
Preference number: 4 (lower is better)
Translates to: LLLALIVHNQNVFVKANWRSEFF*YLHSCI
Trigger: GATGCAGCTATGAAGATAGCAAAAGAACTCAGATCT...CCAGTTAGCCTTGACAAACACATTCTGATTATGAACTATTAGTGCCAATAAAAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223627.2
CDS-3UTR GCA 90 bp AAACTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTTTTGTTGGTGGTTTCTaGAGATCTACAATAAGGACA +
Preference number: 4 (lower is better)
Translates to: KLIPLQNKLKSNLKWYKSFVGGF*RSTIRT
Trigger: TGTCCTTATTGTAGATCTGCAGAAACCACCAACAAA...AGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAGTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR GCA 90 bp AAACTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTTCATTCATCTTTATCTaGAAGCCCCATTTCTACCAA +
Preference number: 4 (lower is better)
Translates to: KLIPLQNKLKSNLKWYKSSFIFI*KPHFYQ
Trigger: TTGGTAGAAATGGGGCTTGCAGATAAAGATGAATGA...AGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAGTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CCA 90 bp AAACTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTCAGTGCATTTACTTGTaGTATATTCTTGAGGTGCTA +
Preference number: 4 (lower is better)
Translates to: KLIPLQNKLKSNLKWYKSQCIYL*YILEVL
Trigger: TAGCACCTCAAGAATATACCACAAGTAAATGCACTG...AGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAGTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CCA 90 bp TTACAAATATTTTCAGTTATGGAAGCTGAGGCTTATGGCAACTTTTATTGGCACCAGTGCATTTACTTGTaGTATATTCTTGAGGTGCTA +
Preference number: 4 (lower is better)
Translates to: LQIFSVMEAEAYGNFYWHQCIYL*YILEVL
Trigger: TAGCACCTCAAGAATATACCACAAGTAAATGCACTG...GTGCCAATAAAAGTTGCCATAAGCCTCAGCTTCCATAACTGAAAATATTTGTAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223627.2
CDS-3UTR CCA 90 bp AACTTTTCACCACACCATTCCTTAACAATTTACCAAGTAAGACTAAAGGAGGAAACAAGCTCTTTTTCCTaGAATCAAGAGAAGCAAGAA +
Preference number: 4 (lower is better)
Translates to: NFSPHHSLTIYQVRLKEETSSFS*NQEKQE
Trigger: TTCTTGCTTCTCTTGATTCCAGGAAAAAGAGCTTGT...TTCCTCCTTTAGTCTTACTTGGTAAATTGTTAAGGAATGGTGTGGTGAAAAGTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CCA 90 bp CTTTTATTGGCACTAATAGTTCATAATCAGAATGTGTTTGTCAAGGCTAACTGGACAAGCTCTTTTTCCTaGAATCAAGAGAAGCAAGAA +
Preference number: 4 (lower is better)
Translates to: LLLALIVHNQNVFVKANWTSSFS*NQEKQE
Trigger: TTCTTGCTTCTCTTGATTCCAGGAAAAAGAGCTTGT...CCAGTTAGCCTTGACAAACACATTCTGATTATGAACTATTAGTGCCAATAAAAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000223627.2
CDS-3UTR GCA 90 bp AAAACTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCATCTCTTTTGTTGGCTaGTTCTTTTTCCCTTCTAAA +
Preference number: 4 (lower is better)
Translates to: KTDTTAEQVKIKPEVVQIISFVG*FFFPSK
Trigger: TTTAGAAGGGAAAAAGAAGCAGCCAACAAAAGAGAT...GATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAGTTTT
34% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR GCA 90 bp TTACAAATATTTTCAGTTATGGAAGCTGAGGCTTATGGCAACTTTTATTGGCACATCTCTTTTGTTGGCTaGTTCTTTTTCCCTTCTAAA +
Preference number: 4 (lower is better)
Translates to: LQIFSVMEAEAYGNFYWHISFVG*FFFPSK
Trigger: TTTAGAAGGGAAAAAGAAGCAGCCAACAAAAGAGAT...GTGCCAATAAAAGTTGCCATAAGCCTCAGCTTCCATAACTGAAAATATTTGTAA
34% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000223627.2
CDS-3UTR GCA 90 bp CCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACAGAAAAACTTGGTTCAACATATaGCAGCTTACATTTAATTGC +
Preference number: 4 (lower is better)
Translates to: PLQNKLKSNLKWYKSNRKTWFNI*QLTFNC
Trigger: GCAATTAAATGTAAGCTGGCATATGTTGAACCAAGT...TTTTCTGTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGG
34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR GCA 90 bp AACTTTTCACCACACCATTCCTTAACAATTTACCAAGTAAGACTAAAGGAGGAAAATGGAAATGATCTTTaGTCTATACCACAAACCATC +
Preference number: 4 (lower is better)
Translates to: NFSPHHSLTIYQVRLKEENGNDL*SIPQTI
Trigger: GATGGTTTGTGGTATAGAGCAAAGATCATTTCCATT...TTCCTCCTTTAGTCTTACTTGGTAAATTGTTAAGGAATGGTGTGGTGAAAAGTT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR GCA 90 bp ATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACAGATTGTCAACTTCTCTGTaGAACCATAATCAACAAACA +
Preference number: 4 (lower is better)
Translates to: IPLQNKLKSNLKWYKSNRLSTSL*NHNQQT
Trigger: TGTTTGTTGATTATGGTTGCACAGAGAAGTTGACAA...TCTGTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTAT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS CCA 90 bp AACAGGCACAGTTCACAAAAGGCATGTCCACATGGAAACTTGTGGTaGTCACCGGAGGCAACGGACACCTTCCTTCCACACCGAGTGCAC +
Preference number: 5 (lower is better)
Translates to: NRHSSQKACPHGNLW*SPEATDTFLPHRVH
Trigger: GTGCACTCGGTGTGGAAGGAAGGTGTCCGTTGCCTCCGGTGACCACCACAAGTTTCCATGTGGACATGCCTTTTGTGAACTGTGCCTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095793.3
ENSMUST00000223627.2
CDS CCA 90 bp GCTAACAGGCACAGTTCACAAAAGGCATGTCCACATGGAAACTTGTaGTGGTCACCGGAGGCAACGGACACCTTCCTTCCACACCGAGTG +
Preference number: 5 (lower is better)
Translates to: ANRHSSQKACPHGNL*WSPEATDTFLPHRV
Trigger: CACTCGGTGTGGAAGGAAGGTGTCCGTTGCCTCCGGTGACCACCACAAGTTTCCATGTGGACATGCCTTTTGTGAACTGTGCCTGTTAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095793.3
ENSMUST00000223627.2
CDS GCA 90 bp AAATCCGTCAGGGGAGGAAACGTCTCCACGTTCTTGTTAAATCTCTaGAGCGCTTCCTCCAGGTTCTCTGACTCTGACTCCCAGCTGACT +
Preference number: 5 (lower is better)
Translates to: KSVRGGNVSTFLLNL*SASSRFSDSDSQLT
Trigger: AGTCAGCTGGGAGTCAGAGTCAGAGAACCTGGAGGAAGCGCTGCAGAGATTTAACAAGAACGTGGAGACGTTTCCTCCCCTGACGGATTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS GCA 90 bp GGCTGCTTCTTTTTCCCTTCTAAATGCCTGTCAGGGGCCTCTGCTTaGAAAGGAGGTTCAGGTGTTTCATCAGTCAGGACAGCAGCATCT +
Preference number: 5 (lower is better)
Translates to: GCFFFPSKCLSGASA*KGGSGVSSVRTAAS
Trigger: AGATGCTGCTGTCCTGACTGATGAAACACCTGAACCTCCTTTGCAAGCAGAGGCCCCTGACAGGCATTTAGAAGGGAAAAAGAAGCAGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095793.3
ENSMUST00000223627.2
CDS TCA 90 bp ACCAGTTTGTCTGTAACCATTCTGAGAATCTGGCCTCTTCGCCACTaGTTTTTAGCTGGGACCTTAACAGCGCAGTGCATATCACACTCC +
Preference number: 5 (lower is better)
Translates to: TSLSVTILRIWPLRH*FLAGTLTAQCISHS
Trigger: GGAGTGTGATATGCACTGCGCTGTTAAGGTCCCAGCTAAAAATCAGTGGCGAAGAGGCCAGATTCTCAGAATGGTTACAGACAAACTGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS TCA 90 bp ACGTTGTGTTGCTTTCCTGTAAGATTATGGTTGCTATGGCTCCAGTaGGGTGCAGTGACAGACAGTCACAAGCTGTTGCTGTCCACTTGT +
Preference number: 5 (lower is better)
Translates to: TLCCFPVRLWLLWLQ*GAVTDSHKLLLSTC
Trigger: ACAAGTGGACAGCAACAGCTTGTGACTGTCTGTCACTGCACCTCACTGGAGCCATAGCAACCATAATCTTACAGGAAAGCAACACAACGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS GCA 90 bp GTGTTGCTTTCCTGTAAGATTATGGTTGCTATGGCTCCAGTGAGGTaGAGTGACAGACAGTCACAAGCTGTTGCTGTCCACTTGTCACTT +
Preference number: 5 (lower is better)
Translates to: VLLSCKIMVAMAPVR*SDRQSQAVAVHLSL
Trigger: AAGTGACAAGTGGACAGCAACAGCTTGTGACTGTCTGTCACTGCACCTCACTGGAGCCATAGCAACCATAATCTTACAGGAAAGCAACAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS CCA 90 bp TGTAACCATTCTGAGAATCTGGCCTCTTCGCCACTGATTTTTAGCTaGGACCTTAACAGCGCAGTGCATATCACACTCCCACTTAACAGG +
Preference number: 5 (lower is better)
Translates to: CNHSENLASSPLIFS*DLNSAVHITLPLNR
Trigger: CCTGTTAAGTGGGAGTGTGATATGCACTGCGCTGTTAAGGTCCCAGCTAAAAATCAGTGGCGAAGAGGCCAGATTCTCAGAATGGTTACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CAA 90 bp CTGCAAGCCCCATTTCTACCAAGGACATGTGAACTGGGTATTGTTCATCTTCATGAGCACCTTTATGGCTaGGGCTGGGTACTGCATAAG +
Preference number: 5 (lower is better)
Translates to: LQAPFLPRTCELGIVHLHEHLYG*GWVLHK
Trigger: CTTATGCAGTACCCAGCCCAAGCCATAAAGGTGCTC...ATGAAGATGAACAATACCCAGTTCACATGTCCTTGGTAGAAATGGGGCTTGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225737.2
CDS TCA 90 bp AAATATAGTTCCATCGTCACCAATGCAGGTCACTATTGCCTCAAATaGACTCGTGTTAGGAACAGCTGGTGGTCTATAGCATCCGGTGCT +
Preference number: 5 (lower is better)
Translates to: KYSSIVTNAGHYCLK*TRVRNSWWSIASGA
Trigger: AGCACCGGATGCTATAGACCACCAGCTGTTCCTAACACGAGTTCATTTGAGGCAATAGTGACCTGCATTGGTGACGATGGAACTATATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS GCA 90 bp GCGCAGTGCATATCACACTCCCACTTAACAGGCTTCCATTCTGAGTaGTCATACGCTGCTACCATCTTCTCTTCTAAACTATTAAGTAAG +
Preference number: 5 (lower is better)
Translates to: AQCISHSHLTGFHSE*SYAATIFSSKLLSK
Trigger: CTTACTTAATAGTTTAGAAGAGAAGATGGTAGCAGCGTATGAGCACTCAGAATGGAAGCCTGTTAAGTGGGAGTGTGATATGCACTGCGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CAA 90 bp AAAACTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCGCTGTTGCTGTCCACTaGTCACTTCCGCCAGTTGGC +
Preference number: 5 (lower is better)
Translates to: KTDTTAEQVKIKPEVVQIAVAVH*SLPPVG
Trigger: GCCAACTGGCGGAAGTGACAAGTGGACAGCAACAGC...GATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CAA 90 bp CTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACGAGCACCTTTATGGCTaGGGCTGGGTACTGCATAAG +
Preference number: 5 (lower is better)
Translates to: LIPLQNKLKSNLKWYKSNEHLYG*GWVLHK
Trigger: CTTATGCAGTACCCAGCCCAAGCCATAAAGGTGCTC...GTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095793.3
ENSMUST00000225737.2
CDS-3UTR CAA 90 bp CTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACGACAGTCACAAGCTGTaGCTGTCCACTTGTCACTTC +
Preference number: 5 (lower is better)
Translates to: LIPLQNKLKSNLKWYKSNDSHKL*LSTCHF
Trigger: GAAGTGACAAGTGGACAGCAACAGCTTGTGACTGTC...GTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CAA 90 bp CTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACTCTGAGGGGGCTTTTTaGGGTATCCAGAAGTCTCTA +
Preference number: 5 (lower is better)
Translates to: LIPLQNKLKSNLKWYKSNSEGAF*GIQKSL
Trigger: TAGAGACTTCTGGATACCCAAAAAAGCCCCCTCAGA...GTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CAA 90 bp AAACTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTCTGGACAACCTGCTTTaGATCCAACAGGAGCAGACT +
Preference number: 5 (lower is better)
Translates to: KLIPLQNKLKSNLKWYKSLDNLL*IQQEQT
Trigger: AGTCTGCTCCTGTTGGATCAAAAGCAGGTTGTCCAG...AGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CAA 90 bp CTTTTATTGGCACTAATAGTTCATAATCAGAATGTGTTTGTCAAGGCTAACTGGCTGGACAACCTGCTTTaGATCCAACAGGAGCAGACT +
Preference number: 5 (lower is better)
Translates to: LLLALIVHNQNVFVKANWLDNLL*IQQEQT
Trigger: AGTCTGCTCCTGTTGGATCAAAAGCAGGTTGTCCAG...CCAGTTAGCCTTGACAAACACATTCTGATTATGAACTATTAGTGCCAATAAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223627.2
CDS-3UTR CAA 90 bp CTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACCAGGTAATGGCCACGTaGTGTTGCTTTCCTGTAAGA +
Preference number: 5 (lower is better)
Translates to: LIPLQNKLKSNLKWYKSNQVMAT*CCFPVR
Trigger: TCTTACAGGAAAGCAACACAACGTGGCCATTACCTG...GTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CAA 90 bp CCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACAGAAAATGTCCACCTCTCTCTTaGAAAGCAGCTCCTGAAGCA +
Preference number: 5 (lower is better)
Translates to: PLQNKLKSNLKWYKSNRKCPPLS*KAAPEA
Trigger: TGCTTCAGGAGCTGCTTTCAAAGAGAGAGGTGGACA...TTTTCTGTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CAA 90 bp CTTTTATTGGCACTAATAGTTCATAATCAGAATGTGTTTGTCAAGGCTAACTGGTCTGAGGGGGCTTTTTaGGGTATCCAGAAGTCTCTA +
Preference number: 5 (lower is better)
Translates to: LLLALIVHNQNVFVKANWSEGAF*GIQKSL
Trigger: TAGAGACTTCTGGATACCCAAAAAAGCCCCCTCAGA...CCAGTTAGCCTTGACAAACACATTCTGATTATGAACTATTAGTGCCAATAAAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000223627.2
CDS-3UTR CAA 90 bp CTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACGCTTCCATGCTCCATTaGGGACAGTATGGTATTCTT +
Preference number: 5 (lower is better)
Translates to: LIPLQNKLKSNLKWYKSNASMLH*GQYGIL
Trigger: AAGAATACCATACTGTCCCAAATGGAGCATGGAAGC...GTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS GCA 90 bp GTATCAAAGTTAATTTTAAAGCACTTAGTAACTACTGAATCTCCTTaGTCCAGGGGTATTTCCAGAGACTTCTCAGGTGAATGGCTGTTA +
Preference number: 5 (lower is better)
Translates to: VSKLILKHLVTTESP*SRGISRDFSGEWLL
Trigger: TAACAGCCATTCACCTGAGAAGTCTCTGGAAATACCCCTGGAGCAAGGAGATTCAGTAGTTACTAAGTGCTTTAAAATTAACTTTGATAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CAA 90 bp CCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACAGAAAATACTGGGTAGTGACCTaGATTCATGCTGACAGTTGT +
Preference number: 5 (lower is better)
Translates to: PLQNKLKSNLKWYKSNRKYWVVT*IHADSC
Trigger: ACAACTGTCAGCATGAATCAAGGTCACTACCCAGTA...TTTTCTGTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CAA 90 bp CTTTTATTGGCACTAATAGTTCATAATCAGAATGTGTTTGTCAAGGCTAACTGGTACTGGGTAGTGACCTaGATTCATGCTGACAGTTGT +
Preference number: 5 (lower is better)
Translates to: LLLALIVHNQNVFVKANWYWVVT*IHADSC
Trigger: ACAACTGTCAGCATGAATCAAGGTCACTACCCAGTA...CCAGTTAGCCTTGACAAACACATTCTGATTATGAACTATTAGTGCCAATAAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223627.2
CDS-3UTR CAA 90 bp ATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACAGAACAACCTCCATAACTTaGCCACGGTACCACAAAGTA +
Preference number: 5 (lower is better)
Translates to: IPLQNKLKSNLKWYKSNRTTSIT*PRYHKV
Trigger: TACTTTGTGGTACCGTGGCAAAGTTATGGAGGTTGT...TCTGTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS TCA 90 bp CTGAAGATAAAAATCAGTAGGACTATTTATATGGCAAACCATGACTaGAACTTCAGTCATCTCTTCAGGCAAAATGGGTGGATGATAGCA +
Preference number: 5 (lower is better)
Translates to: LKIKISRTIYMANHD*NFSHLFRQNGWMIA
Trigger: TGCTATCATCCACCCATTTTGCCTGAAGAGATGACTGAAGTTTCAGTCATGGTTTGCCATATAAATAGTCCTACTGATTTTTATCTTCAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CAA 90 bp CTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACAGTCAGTGCATTTACTaGTGGTATATTCTTGAGGTG +
Preference number: 5 (lower is better)
Translates to: LIPLQNKLKSNLKWYKSNSQCIY*WYILEV
Trigger: CACCTCAAGAATATACCACAAGTAAATGCACTGACT...GTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CAA 90 bp ATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACAGACAACCATCTCTTTTGTaGGCTGCTTCTTTTTCCCTT +
Preference number: 5 (lower is better)
Translates to: IPLQNKLKSNLKWYKSNRQPSLL*AASFSL
Trigger: AAGGGAAAAAGAAGCAGCCAACAAAAGAGATGGTTG...TCTGTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CAA 90 bp CTTTTATTGGCACTAATAGTTCATAATCAGAATGTGTTTGTCAAGGCTAACTGGCAACCATCTCTTTTGTaGGCTGCTTCTTTTTCCCTT +
Preference number: 5 (lower is better)
Translates to: LLLALIVHNQNVFVKANWQPSLL*AASFSL
Trigger: AAGGGAAAAAGAAGCAGCCAACAAAAGAGATGGTTG...CCAGTTAGCCTTGACAAACACATTCTGATTATGAACTATTAGTGCCAATAAAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000223627.2
CDS-3UTR CAA 90 bp ATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACAGAGCTCCTATTGCAAACTaGCTTCATCTTCTTCTCCAA +
Preference number: 5 (lower is better)
Translates to: IPLQNKLKSNLKWYKSNRAPIAN*LHLLLQ
Trigger: TTGGAGAAGAAGATGAAGCAAGTTTGCAATAGGAGC...TCTGTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CAA 90 bp CTTTTATTGGCACTAATAGTTCATAATCAGAATGTGTTTGTCAAGGCTAACTGGGCTCCTATTGCAAACTaGCTTCATCTTCTTCTCCAA +
Preference number: 5 (lower is better)
Translates to: LLLALIVHNQNVFVKANWAPIAN*LHLLLQ
Trigger: TTGGAGAAGAAGATGAAGCAAGTTTGCAATAGGAGC...CCAGTTAGCCTTGACAAACACATTCTGATTATGAACTATTAGTGCCAATAAAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223627.2
CDS-3UTR CAA 90 bp CCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACAGAAAATTTAGCTACACAGGCTaGATTCTGAAGAGGACAAAG +
Preference number: 5 (lower is better)
Translates to: PLQNKLKSNLKWYKSNRKFSYTG*ILKRTK
Trigger: CTTTGTCCTCTTCAGAATCAAGCCTGTGTAGCTAAA...TTTTCTGTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CAA 90 bp CCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACAGAAAAAAGACCTCTACCAGTTaGTCTGTAACCATTCTGAGA +
Preference number: 5 (lower is better)
Translates to: PLQNKLKSNLKWYKSNRKKTSTS*SVTILR
Trigger: TCTCAGAATGGTTACAGACAAACTGGTAGAGGTCTT...TTTTCTGTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGG
38% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CAA 90 bp AACTTTTCACCACACCATTCCTTAACAATTTACCAAGTAAGACTAAAGGAGGAAAACTTCCCCCATGAATaGTTGGGCAATTCCATAATG +
Preference number: 5 (lower is better)
Translates to: NFSPHHSLTIYQVRLKEENFPHE*LGNSIM
Trigger: CATTATGGAATTGCCCAACAATTCATGGGGGAAGTT...TTCCTCCTTTAGTCTTACTTGGTAAATTGTTAAGGAATGGTGTGGTGAAAAGTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CAA 90 bp CTTTTATTGGCACTAATAGTTCATAATCAGAATGTGTTTGTCAAGGCTAACTGGCTCTCACTTACTGAATaGTATGGGACGATGTCTTTC +
Preference number: 5 (lower is better)
Translates to: LLLALIVHNQNVFVKANWLSLTE*YGTMSF
Trigger: GAAAGACATCGTCCCATACAATTCAGTAAGTGAGAG...CCAGTTAGCCTTGACAAACACATTCTGATTATGAACTATTAGTGCCAATAAAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223627.2
CDS-3UTR CAA 90 bp TTACAAATATTTTCAGTTATGGAAGCTGAGGCTTATGGCAACTTTTATTGGCACAGTCAGTGCATTTACTaGTGGTATATTCTTGAGGTG +
Preference number: 5 (lower is better)
Translates to: LQIFSVMEAEAYGNFYWHSQCIY*WYILEV
Trigger: CACCTCAAGAATATACCACAAGTAAATGCACTGACT...GTGCCAATAAAAGTTGCCATAAGCCTCAGCTTCCATAACTGAAAATATTTGTAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223627.2
CDS-3UTR CAA 90 bp AAACTGATACCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTTTACAGCTGATGGGTTaGAAACATTCCTATGTATGG +
Preference number: 5 (lower is better)
Translates to: KLIPLQNKLKSNLKWYKSLQLMG*KHSYVW
Trigger: CCATACATAGGAATGTTTCAAACCCATCAGCTGTAA...AGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGGTATCAGTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CAA 90 bp CCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACAGAAAATGTCTCTTGTCTTGTTaGATCTTGTGTGCTATCAAG +
Preference number: 5 (lower is better)
Translates to: PLQNKLKSNLKWYKSNRKCLLSC*ILCAIK
Trigger: CTTGATAGCACACAAGATCAAACAAGACAAGAGACA...TTTTCTGTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CAA 90 bp TTACAAATATTTTCAGTTATGGAAGCTGAGGCTTATGGCAACTTTTATTGGCACTGTCTCTTGTCTTGTTaGATCTTGTGTGCTATCAAG +
Preference number: 5 (lower is better)
Translates to: LQIFSVMEAEAYGNFYWHCLLSC*ILCAIK
Trigger: CTTGATAGCACACAAGATCAAACAAGACAAGAGACA...GTGCCAATAAAAGTTGCCATAAGCCTCAGCTTCCATAACTGAAAATATTTGTAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223627.2
CDS-3UTR CAA 90 bp CCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACAGAAAAAGGATACAGATGACATaGTGGAATCTTCTCAGTGAA +
Preference number: 5 (lower is better)
Translates to: PLQNKLKSNLKWYKSNRKRIQMT*WNLLSE
Trigger: TTCACTGAGAAGATTCCACAATGTCATCTGTATCCT...TTTTCTGTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS-3UTR CAA 90 bp CCACTGCAGAACAAGTTAAAATCAAACCTGAAGTGGTACAAATCTAACAGAAAAAGAAGAAGCATAAAGTaGTTTTCCTTGGAGACAGTC +
Preference number: 5 (lower is better)
Translates to: PLQNKLKSNLKWYKSNRKRRSIK*FSLETV
Trigger: GACTGTCTCCAAGGAAAACAACTTTATGCTTCTTCT...TTTTCTGTTAGATTTGTACCACTTCAGGTTTGATTTTAACTTGTTCTGCAGTGG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS CAA 90 bp GGTGCTAACAGGCACAGTTCACAAAAGGCATGTCCACATGGAAACTaGTGGTGGTCACCGGAGGCAACGGACACCTTCCTTCCACACCGA +
Preference number: 6 (lower is better)
Translates to: GANRHSSQKACPHGN*WWSPEATDTFLPHR
Trigger: TCGGTGTGGAAGGAAGGTGTCCGTTGCCTCCGGTGACCACCACAAGTTTCCATGTGGACATGCCTTTTGTGAACTGTGCCTGTTAGCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095793.3
ENSMUST00000223627.2
CDS GCA 72 bp GACGTAGTTTCATCCGGTGAGACAATGTGCTTCACTTaGACGGCAAACAGCTCCTCTGGTGGAGGCAGAAGG +
Preference number: 6 (lower is better)
Translates to: DVVSSGETMCFT*TANSSSGGGRR
Trigger: CCTTCTGCCTCCACCAGAGGAGCTGTTTGCCGTGCAAGTGAAGCACATTGTCTCACCGGATGAAACTACGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225737.2
CDS GCA 72 bp AGGGGAGGAAACGTCTCCACGTTCTTGTTAAATCTCTaGAGCGCTTCCTCCAGGTTCTCTGACTCTGACTCC +
Preference number: 6 (lower is better)
Translates to: RGGNVSTFLLNL*SASSRFSDSDS
Trigger: GGAGTCAGAGTCAGAGAACCTGGAGGAAGCGCTGCAGAGATTTAACAAGAACGTGGAGACGTTTCCTCCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS CCA 72 bp AGTTCACAAAAGGCATGTCCACATGGAAACTTGTGGTaGTCACCGGAGGCAACGGACACCTTCCTTCCACAC +
Preference number: 6 (lower is better)
Translates to: SSQKACPHGNLW*SPEATDTFLPH
Trigger: GTGTGGAAGGAAGGTGTCCGTTGCCTCCGGTGACCACCACAAGTTTCCATGTGGACATGCCTTTTGTGAACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095793.3
ENSMUST00000223627.2
CDS CCA 72 bp CACAGTTCACAAAAGGCATGTCCACATGGAAACTTGTaGTGGTCACCGGAGGCAACGGACACCTTCCTTCCA +
Preference number: 6 (lower is better)
Translates to: HSSQKACPHGNL*WSPEATDTFLP
Trigger: TGGAAGGAAGGTGTCCGTTGCCTCCGGTGACCACCACAAGTTTCCATGTGGACATGCCTTTTGTGAACTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095793.3
ENSMUST00000223627.2
CDS CAA 72 bp AGGCACAGTTCACAAAAGGCATGTCCACATGGAAACTaGTGGTGGTCACCGGAGGCAACGGACACCTTCCTT +
Preference number: 6 (lower is better)
Translates to: RHSSQKACPHGN*WWSPEATDTFL
Trigger: AAGGAAGGTGTCCGTTGCCTCCGGTGACCACCACAAGTTTCCATGTGGACATGCCTTTTGTGAACTGTGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095793.3
ENSMUST00000223627.2
CDS CAA 72 bp TGGACCCTGATGGTGCCTCCCACAACCTCCATAACTTaGCCACGGTACCACAAAGTATCAGATCCTCTCACT +
Preference number: 6 (lower is better)
Translates to: WTLMVPPTTSIT*PRYHKVSDPLT
Trigger: AGTGAGAGGATCTGATACTTTGTGGTACCGTGGCAAAGTTATGGAGGTTGTGGGAGGCACCATCAGGGTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS CAA 72 bp GGGAGGTTTAAACCCTGCCAAGAGCACCTTTATGGCTaGGGCTGGGTACTGCATAAGCTGAACAGGAATCTG +
Preference number: 6 (lower is better)
Translates to: GRFKPCQEHLYG*GWVLHKLNRNL
Trigger: CAGATTCCTGTTCAGCTTATGCAGTACCCAGCCCAAGCCATAAAGGTGCTCTTGGCAGGGTTTAAACCTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS CAA 90 bp CCAGTGAGGTGCAGTGACAGACAGTCACAAGCTGTTGCTGTCCACTaGTCACTTCCGCCAGTTGGCCTTATATCAACAAGTGAACATTCC +
Preference number: 6 (lower is better)
Translates to: PVRCSDRQSQAVAVH*SLPPVGLISTSEHS
Trigger: GGAATGTTCACTTGTTGATATAAGGCCAACTGGCGGAAGTGACAAGTGGACAGCAACAGCTTGTGACTGTCTGTCACTGCACCTCACTGG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS CAA 90 bp TCTAAATACTGGACCCTGATGGTGCCTCCCACAACCTCCATAACTTaGCCACGGTACCACAAAGTATCAGATCCTCTCACTGCACAAGGC +
Preference number: 6 (lower is better)
Translates to: SKYWTLMVPPTTSIT*PRYHKVSDPLTAQG
Trigger: GCCTTGTGCAGTGAGAGGATCTGATACTTTGTGGTACCGTGGCAAAGTTATGGAGGTTGTGGGAGGCACCATCAGGGTCCAGTATTTAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS CAA 90 bp ATCTCTGAGCTAAAATCCGTCAGGGGAGGAAACGTCTCCACGTTCTaGTTAAATCTCTGCAGCGCTTCCTCCAGGTTCTCTGACTCTGAC +
Preference number: 6 (lower is better)
Translates to: ISELKSVRGGNVSTF*LNLCSASSRFSDSD
Trigger: GTCAGAGTCAGAGAACCTGGAGGAAGCGCTGCAGAGATTTAACAAGAACGTGGAGACGTTTCCTCCCCTGACGGATTTTAGCTCAGAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS TCA 72 bp TCGGTGGCAAGGCTTCCAGAGAAGAATCTTCCTCGATaGAGCCATCTACTGGGTAGTGACCTTGATTCATGC +
Preference number: 6 (lower is better)
Translates to: SVARLPEKNLPR*SHLLGSDLDSC
Trigger: GCATGAATCAAGGTCACTACCCAGTAGATGGCTTCATCGAGGAAGATTCTTCTCTGGAAGCCTTGCCACCGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095793.3
ENSMUST00000223627.2
CDS GCA 72 bp TCCTGTAAGATTATGGTTGCTATGGCTCCAGTGAGGTaGAGTGACAGACAGTCACAAGCTGTTGCTGTCCAC +
Preference number: 6 (lower is better)
Translates to: SCKIMVAMAPVR*SDRQSQAVAVH
Trigger: GTGGACAGCAACAGCTTGTGACTGTCTGTCACTGCACCTCACTGGAGCCATAGCAACCATAATCTTACAGGA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS GCA 72 bp ATATACATTTCATCCGGTGAGACAATGTGCTTCACTTaGACGGCAAACAGCTCCTCTGGTGGAGGCAGAAGG +
Preference number: 6 (lower is better)
Translates to: IYISSGETMCFT*TANSSSGGGRR
Trigger: CCTTCTGCCTCCACCAGAGGAGCTGTTTGCCGTGCAAGTGAAGCACATTGTCTCACCGGATGAAATGTATAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS CCA 72 bp TCTGAGAATCTGGCCTCTTCGCCACTGATTTTTAGCTaGGACCTTAACAGCGCAGTGCATATCACACTCCCA +
Preference number: 6 (lower is better)
Translates to: SENLASSPLIFS*DLNSAVHITLP
Trigger: TGGGAGTGTGATATGCACTGCGCTGTTAAGGTCCCAGCTAAAAATCAGTGGCGAAGAGGCCAGATTCTCAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS CAA 72 bp CTAAAATCCGTCAGGGGAGGAAACGTCTCCACGTTCTaGTTAAATCTCTGCAGCGCTTCCTCCAGGTTCTCT +
Preference number: 6 (lower is better)
Translates to: LKSVRGGNVSTF*LNLCSASSRFS
Trigger: AGAGAACCTGGAGGAAGCGCTGCAGAGATTTAACAAGAACGTGGAGACGTTTCCTCCCCTGACGGATTTTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS TCA 72 bp TGCTTTCCTGTAAGATTATGGTTGCTATGGCTCCAGTaGGGTGCAGTGACAGACAGTCACAAGCTGTTGCTG +
Preference number: 6 (lower is better)
Translates to: CFPVRLWLLWLQ*GAVTDSHKLLL
Trigger: CAGCAACAGCTTGTGACTGTCTGTCACTGCACCTCACTGGAGCCATAGCAACCATAATCTTACAGGAAAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS GCA 72 bp TTTTTCCCTTCTAAATGCCTGTCAGGGGCCTCTGCTTaGAAAGGAGGTTCAGGTGTTTCATCAGTCAGGACA +
Preference number: 6 (lower is better)
Translates to: FFPSKCLSGASA*KGGSGVSSVRT
Trigger: TGTCCTGACTGATGAAACACCTGAACCTCCTTTGCAAGCAGAGGCCCCTGACAGGCATTTAGAAGGGAAAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095793.3
ENSMUST00000223627.2
CDS GCA 72 bp TTTGCCACGGTACCACAAAGTATCAGATCCTCTCACTaGACAAGGCTCTCCCTTTTTCCAGGAATATGGCTC +
Preference number: 6 (lower is better)
Translates to: FATVPQSIRSSH*TRLSLFPGIWL
Trigger: GAGCCATATTCCTGGAAAAAGGGAGAGCCTTGTGCAGTGAGAGGATCTGATACTTTGTGGTACCGTGGCAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS CAA 72 bp TCCACTTTTGCCTCCTTTTCCCAGCCCTCAGTTGAATaGTATGGGACGATGTCTTTCAAGGAGCACAGGTGT +
Preference number: 6 (lower is better)
Translates to: STFASFSQPSVE*YGTMSFKEHRC
Trigger: ACACCTGTGCTCCTTGAAAGACATCGTCCCATACAATTCAACTGAGGGCTGGGAAAAGGAGGCAAAAGTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS CAA 72 bp TGCAGTGACAGACAGTCACAAGCTGTTGCTGTCCACTaGTCACTTCCGCCAGTTGGCCTTATATCAACAAGT +
Preference number: 6 (lower is better)
Translates to: CSDRQSQAVAVH*SLPPVGLISTS
Trigger: ACTTGTTGATATAAGGCCAACTGGCGGAAGTGACAAGTGGACAGCAACAGCTTGTGACTGTCTGTCACTGCA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS TCA 72 bp TCTGTAACCATTCTGAGAATCTGGCCTCTTCGCCACTaGTTTTTAGCTGGGACCTTAACAGCGCAGTGCATA +
Preference number: 6 (lower is better)
Translates to: SVTILRIWPLRH*FLAGTLTAQCI
Trigger: TATGCACTGCGCTGTTAAGGTCCCAGCTAAAAATCAGTGGCGAAGAGGCCAGATTCTCAGAATGGTTACAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS GCA 72 bp CAGAAGTCACTTAGTGTAATATGCTGTTCACCATCATaGTCTGGTCCCTCATGTGTGTCACCAACTCCTGTG +
Preference number: 6 (lower is better)
Translates to: QKSLSVICCSPS*SGPSCVSPTPV
Trigger: CACAGGAGTTGGTGACACACATGAGGGACCAGAGCATGATGGTGAACAGCATATTACACTAAGTGACTTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095793.3
ENSMUST00000223627.2
CDS GCA 72 bp TCAAGGCAAATATACATTTCATCCGGTGAGACAATGTaGTTCACTTGCACGGCAAACAGCTCCTCTGGTGGA +
Preference number: 6 (lower is better)
Translates to: SRQIYISSGETM*FTCTANSSSGG
Trigger: TCCACCAGAGGAGCTGTTTGCCGTGCAAGTGAAGCACATTGTCTCACCGGATGAAATGTATATTTGCCTTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS CAA 90 bp TCCACAGCCTTTGAGGGAGAATCACTTTCTCTCTCACTTACTGAATaGTATGGGACGATGTCTTTCAAGGAGCACAGGTGTGCTAAATGT +
Preference number: 6 (lower is better)
Translates to: STAFEGESLSLSLTE*YGTMSFKEHRCAKC
Trigger: ACATTTAGCACACCTGTGCTCCTTGAAAGACATCGTCCCATACAATTCAGTAAGTGAGAGAGAAAGTGATTCTCCCTCAAAGGCTGTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223627.2
CDS TCA 72 bp ATCTTCAGAGTCAAGGCAAATATACATTTCATCCGGTaGGACAATGTGCTTCACTTGCACGGCAAACAGCTC +
Preference number: 6 (lower is better)
Translates to: IFRVKANIHFIR*DNVLHLHGKQL
Trigger: GAGCTGTTTGCCGTGCAAGTGAAGCACATTGTCTCACCGGATGAAATGTATATTTGCCTTGACTCTGAAGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS CAA 72 bp AATTTCCTCAATTATCACATCAGGGCTGGATCCCAGTaGAGGCAGTACAGCAATAGTCTTAGGAGATGTCAC +
Preference number: 6 (lower is better)
Translates to: NFLNYHIRAGSQ*RQYSNSLRRCH
Trigger: GTGACATCTCCTAAGACTATTGCTGTACTGCCTCAACTGGGATCCAGCCCTGATGTGATAATTGAGGAAATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095793.3
ENSMUST00000223627.2
CDS CAA 90 bp TTCCTCAATAATTTCCTCAATTATCACATCAGGGCTGGATCCCAGTaGAGGCAGTACAGCAATAGTCTTAGGAGATGTCACCACAACCAT +
Preference number: 6 (lower is better)
Translates to: FLNNFLNYHIRAGSQ*RQYSNSLRRCHHNH
Trigger: ATGGTTGTGGTGACATCTCCTAAGACTATTGCTGTACTGCCTCAACTGGGATCCAGCCCTGATGTGATAATTGAGGAAATTATTGAGGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095793.3
ENSMUST00000223627.2
CDS GCA 72 bp ATATCACACTCCCACTTAACAGGCTTCCATTCTGAGTaGTCATACGCTGCTACCATCTTCTCTTCTAAACTA +
Preference number: 6 (lower is better)
Translates to: ISHSHLTGFHSE*SYAATIFSSKL
Trigger: TAGTTTAGAAGAGAAGATGGTAGCAGCGTATGAGCACTCAGAATGGAAGCCTGTTAAGTGGGAGTGTGATAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS CCA 72 bp CAGTTGTATGAACCTCACAGTCAGTGCATTTACTTGTaGTATATTCTTGAGGTGCTAACAGGCACAGTTCAC +
Preference number: 6 (lower is better)
Translates to: QLYEPHSQCIYL*YILEVLTGTVH
Trigger: GTGAACTGTGCCTGTTAGCACCTCAAGAATATACCACAAGTAAATGCACTGACTGTGAGGTTCATACAACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095793.3
ENSMUST00000223627.2
CDS CAA 72 bp CATCTCGGCAGAAAATTTTCACAGGTAATGGCCACGTaGTGTTGCTTTCCTGTAAGATTATGGTTGCTATGG +
Preference number: 6 (lower is better)
Translates to: HLGRKFSQVMAT*CCFPVRLWLLW
Trigger: CCATAGCAACCATAATCTTACAGGAAAGCAACACAACGTGGCCATTACCTGTGAAAATTTTCTGCCGAGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS CAA 72 bp TTTGAGGGAGAATCACTTTCTCTCTCACTTACTGAATaGTATGGGACGATGTCTTTCAAGGAGCACAGGTGT +
Preference number: 6 (lower is better)
Translates to: FEGESLSLSLTE*YGTMSFKEHRC
Trigger: ACACCTGTGCTCCTTGAAAGACATCGTCCCATACAATTCAGTAAGTGAGAGAGAAAGTGATTCTCCCTCAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223627.2
CDS CAA 90 bp GCACCTAGTTCCAAAATGTCTGAAGGATCAAGGTGTAAGCTCCTATaGCAAACTTGCTTCATCTTCTTCTCCAATATTGTTGCATCTTTT +
Preference number: 6 (lower is better)
Translates to: APSSKMSEGSRCKLL*QTCFIFFSNIVASF
Trigger: AAAAGATGCAACAATATTGGAGAAGAAGATGAAGCAAGTTTGCAATAGGAGCTTACACCTTGATCCTTCAGACATTTTGGAACTAGGTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095793.3
ENSMUST00000223627.2
CDS TCA 72 bp AAAATCAGTAGGACTATTTATATGGCAAACCATGACTaGAACTTCAGTCATCTCTTCAGGCAAAATGGGTGG +
Preference number: 6 (lower is better)
Translates to: KISRTIYMANHD*NFSHLFRQNGW
Trigger: CCACCCATTTTGCCTGAAGAGATGACTGAAGTTTCAGTCATGGTTTGCCATATAAATAGTCCTACTGATTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095793.3
CDS CAA 72 bp CAATTTCTTCTGTCTCCGACATTACAGCTGATGGGTTaGAAACATTCCTATGTATGGAGGATGAATGTTCTA +
Preference number: 6 (lower is better)
Translates to: QFLLSPTLQLMG*KHSYVWRMNVL
Trigger: TAGAACATTCATCCTCCATACATAGGAATGTTTCAAACCCATCAGCTGTAATGTCGGAGACAGAAGAAATTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095793.3
ENSMUST00000223627.2
CDS CAA 90 bp GGTGTAAGCTCCTATTGCAAACTTGCTTCATCTTCTTCTCCAATATaGTTGCATCTTTTATTTGTGAATATTTCCGCACATAGAAGTGGC +
Preference number: 6 (lower is better)
Translates to: GVSSYCKLASSSSPI*LHLLFVNISAHRSG
Trigger: GCCACTTCTATGTGCGGAAATATTCACAAATAAAAGATGCAACAATATTGGAGAAGAAGATGAAGCAAGTTTGCAATAGGAGCTTACACC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095793.3
ENSMUST00000223627.2
CDS TCA 72 bp ACAGCCTCTGTTAGACTGTGTGTCTCTTGTCTTGTTTaGTCTTGTGTGCTATCAAGCATTTTTATAGCATTA +
Preference number: 6 (lower is better)
Translates to: TASVRLCVSCLV*SCVLSSIFIAL
Trigger: TAATGCTATAAAAATGCTTGATAGCACACAAGATCAAACAAGACAAGAGACACACAGTCTAACAGAGGCTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095793.3
ENSMUST00000223627.2
CDS CAA 72 bp TCCAAAATGTCTGAAGGATCAAGGTGTAAGCTCCTATaGCAAACTTGCTTCATCTTCTTCTCCAATATTGTT +
Preference number: 6 (lower is better)
Translates to: SKMSEGSRCKLL*QTCFIFFSNIV
Trigger: AACAATATTGGAGAAGAAGATGAAGCAAGTTTGCAATAGGAGCTTACACCTTGATCCTTCAGACATTTTGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095793.3
ENSMUST00000223627.2