RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RNF165 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025427

Ensembl transcript IDs: ENSMUST00000026494.14, ENSMUST00000182024.2

Found 296 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAGGAGCGGGGCATTGCCAGCCGGAGCATAGGGCCTGTCCTACTCTaGCCCCACACAACAGCACAGCGAGCCCGCGAGGAGCTCTGCGGG +
Preference number: 1 (lower is better)
Translates to: QERGIASRSIGPVLL*PHTTAQRAREELCG
Trigger: CCCGCAGAGCTCCTCGCGGGCTCGCTGTGCTGTTGTGTGGGGCCAGAGTAGGACAGGCCCTATGCTCCGGCTGGCAATGCCCCGCTCCTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR GCA 90 bp CAACAGCACAGCGAGCCCGCGAGGAGCTCTGCGGGAGGCAGTGTCTaGCAGGCCTGGCAGTGTGGTAATTGTGCTCCACCGGCGTGGTGG +
Preference number: 1 (lower is better)
Translates to: QQHSEPARSSAGGSV*QAWQCGNCAPPAWW
Trigger: CCACCACGCCGGTGGAGCACAATTACCACACTGCCAGGCCTGGCAGACACTGCCTCCCGCAGAGCTCCTCGCGGGCTCGCTGTGCTGTTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR CCA 90 bp AGCTTGAGGCCTGTCACAGGTGGTGGCGAGGGTGACCGGGGAGACTaGGGTCCTTGGCAGGTGGAGGAACAACGTGCAGCCCCAGCTGCC +
Preference number: 1 (lower is better)
Translates to: SLRPVTGGGEGDRGD*GPWQVEEQRAAPAA
Trigger: GGCAGCTGGGGCTGCACGTTGTTCCTCCACCTGCCAAGGACCCCAGTCTCCCCGGTCACCCTCGCCACCACCTGTGACAGGCCTCAAGCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR TCA 90 bp AAGAATGCTTGCACGGAGGCTGGGGGCCTTTGCGGGAGAGGAGCTTaGGGCCTGTCACAGGTGGTGGCGAGGGTGACCGGGGAGACTGGG +
Preference number: 1 (lower is better)
Translates to: KNACTEAGGLCGRGA*GLSQVVARVTGETG
Trigger: CCCAGTCTCCCCGGTCACCCTCGCCACCACCTGTGACAGGCCTCAAGCTCCTCTCCCGCAAAGGCCCCCAGCCTCCGTGCAAGCATTCTT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR GCA 90 bp CCACCCAATCGGCAGCCCTCCCACCCTCGGCCTGGAAATGGGAGCTaGTCCAGGGCACAAGGACTCCAAGTACGTGGAAAGGGGAGGGGG +
Preference number: 1 (lower is better)
Translates to: PPNRQPSHPRPGNGS*SRAQGLQVRGKGRG
Trigger: CCCCCTCCCCTTTCCACGTACTTGGAGTCCTTGTGCCCTGGAGCAGCTCCCATTTCCAGGCCGAGGGTGGGAGGGCTGCCGATTGGGTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CCA 90 bp TGCCTCATCGCCGCTCCTTCCTGGCTTCCTGACCAGTCGGAGGACTaGGCAGAGGCACTGGCTTTTCTCCACCCAATCGGCAGCCCTCCC +
Preference number: 1 (lower is better)
Translates to: CLIAAPSWLPDQSED*AEALAFLHPIGSPP
Trigger: GGGAGGGCTGCCGATTGGGTGGAGAAAAGCCAGTGCCTCTGCCCAGTCCTCCGACTGGTCAGGAAGCCAGGAAGGAGCGGCGATGAGGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR GCA 90 bp TCACTCGGCCTGTGTGCCAGGGCCTCGGAAGCAGGTGTATGTATGTaGGCACAGGAGACCTCTCAGCGGCAAGGCTGGCTGAGGGCAACT +
Preference number: 1 (lower is better)
Translates to: SLGLCARASEAGVCM*AQETSQRQGWLRAT
Trigger: AGTTGCCCTCAGCCAGCCTTGCCGCTGAGAGGTCTCCTGTGCGCACATACATACACCTGCTTCCGAGGCCCTGGCACACAGGCCGAGTGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR GCA 90 bp AAAGGAAGCAAGCCGAACCCGCCCTGCCCTCTCACTCGGCCTGTGTaGCAGGGCCTCGGAAGCAGGTGTATGTATGTGCGCACAGGAGAC +
Preference number: 1 (lower is better)
Translates to: KGSKPNPPCPLTRPV*QGLGSRCMYVRTGD
Trigger: GTCTCCTGTGCGCACATACATACACCTGCTTCCGAGGCCCTGGCACACAGGCCGAGTGAGAGGGCAGGGCGGGTTCGGCTTGCTTCCTTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR GCA 90 bp GTGGCAACCCCAGCTCTTGGGTTTCTCTCCTCCGTGCCAGAGCTATaGAAACCCATGGGGCTTCCCGTGGAAGGTGGAGCTACCCACCAG +
Preference number: 1 (lower is better)
Translates to: VATPALGFLSSVPEL*KPMGLPVEGGATHQ
Trigger: CTGGTGGGTAGCTCCACCTTCCACGGGAAGCCCCATGGGTTTGCATAGCTCTGGCACGGAGGAGAGAAACCCAAGAGCTGGGGTTGCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR CCA 90 bp GTCTGCCAGGCCTGGCAGTGTGGTAATTGTGCTCCACCGGCGTGGTaGGTGACTCCACAGGCCATCTCCAAGAAAAGCAAGGCTCCAGGG +
Preference number: 1 (lower is better)
Translates to: VCQAWQCGNCAPPAW*VTPQAISKKSKAPG
Trigger: CCCTGGAGCCTTGCTTTTCTTGGAGATGGCCTGTGGAGTCACCCACCACGCCGGTGGAGCACAATTACCACACTGCCAGGCCTGGCAGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR TCA 90 bp GCCAGGCCTGGCAGTGTGGTAATTGTGCTCCACCGGCGTGGTGGGTaGCTCCACAGGCCATCTCCAAGAAAAGCAAGGCTCCAGGGTAGA +
Preference number: 1 (lower is better)
Translates to: ARPGSVVIVLHRRGG*LHRPSPRKARLQGR
Trigger: TCTACCCTGGAGCCTTGCTTTTCTTGGAGATGGCCTGTGGAGTCACCCACCACGCCGGTGGAGCACAATTACCACACTGCCAGGCCTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR CCA 90 bp CAGCTCTTGGGTTTCTCTCCTCCGTGCCAGAGCTATGCAAACCCATaGGGCTTCCCGTGGAAGGTGGAGCTACCCACCAGGCAAAGGCAG +
Preference number: 1 (lower is better)
Translates to: QLLGFSPPCQSYANP*GFPWKVELPTRQRQ
Trigger: CTGCCTTTGCCTGGTGGGTAGCTCCACCTTCCACGGGAAGCCCCATGGGTTTGCATAGCTCTGGCACGGAGGAGAGAAACCCAAGAGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR CCA 90 bp ACGTGGTCTAGCCACACGGGTAGGTGGTGTGGCAACCCCAGCTCTTaGGTTTCTCTCCTCCGTGCCAGAGCTATGCAAACCCATGGGGCT +
Preference number: 1 (lower is better)
Translates to: TWSSHTGRWCGNPSS*VSLLRARAMQTHGA
Trigger: AGCCCCATGGGTTTGCATAGCTCTGGCACGGAGGAGAGAAACCCAAGAGCTGGGGTTGCCACACCACCTACCCGTGTGGCTAGACCACGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR CCA 90 bp TCACAGCTGAGGACGCTGAGGCCCAGCAAGCCATTGGGATGGGGTTaGGGATTTCCAGCATCTCCCAGTTTGCCAGTGAAGAGCCAGGAC +
Preference number: 1 (lower is better)
Translates to: SQLRTLRPSKPLGWG*GFPASPSLPVKSQD
Trigger: GTCCTGGCTCTTCACTGGCAAACTGGGAGATGCTGGAAATCCCCAACCCCATCCCAATGGCTTGCTGGGCCTCAGCGTCCTCAGCTGTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CCA 90 bp CTCCGTGCCAGAGCTATGCAAACCCATGGGGCTTCCCGTGGAAGGTaGAGCTACCCACCAGGCAAAGGCAGTGATGTCAAGAGCCGAGAA +
Preference number: 1 (lower is better)
Translates to: LRARAMQTHGASRGR*SYPPGKGSDVKSRE
Trigger: TTCTCGGCTCTTGACATCACTGCCTTTGCCTGGTGGGTAGCTCCACCTTCCACGGGAAGCCCCATGGGTTTGCATAGCTCTGGCACGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR CCA 90 bp AGTGTCTGCCAGGCCTGGCAGTGTGGTAATTGTGCTCCACCGGCGTaGTGGGTGACTCCACAGGCCATCTCCAAGAAAAGCAAGGCTCCA +
Preference number: 1 (lower is better)
Translates to: SVCQAWQCGNCAPPA*WVTPQAISKKSKAP
Trigger: TGGAGCCTTGCTTTTCTTGGAGATGGCCTGTGGAGTCACCCACCACGCCGGTGGAGCACAATTACCACACTGCCAGGCCTGGCAGACACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR TCA 90 bp ACAGAGTGGCCTCAGAGAGGAGTGACCCACCTAGACCACCCCCAATaGCCTCTGAGCCACAGCCATCTTCAGAGGACATCACGGCTTGGA +
Preference number: 1 (lower is better)
Translates to: TEWPQRGVTHLDHPQ*PLSHSHLQRTSRLG
Trigger: TCCAAGCCGTGATGTCCTCTGAAGATGGCTGTGGCTCAGAGGTCATTGGGGGTGGTCTAGGTGGGTCACTCCTCTCTGAGGCCACTCTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR TCA 90 bp GCCAGCCTTTGTACTGGAGACCGTGTTCTCGATGGCGACCAGAGTTaGCTGAGGCCACACTCAGCACGCCTGACCTTCACCATAAGCACT +
Preference number: 1 (lower is better)
Translates to: ASLCTGDRVLDGDQS*LRPHSARLTFTIST
Trigger: AGTGCTTATGGTGAAGGTCAGGCGTGCTGAGTGTGGCCTCAGTCAACTCTGGTCGCCATCGAGAACACGGTCTCCAGTACAAAGGCTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CCA 90 bp CTTTCTTTCCTGGGCCAGCCTTTGTACTGGAGACCGTGTTCTCGATaGCGACCAGAGTTGACTGAGGCCACACTCAGCACGCCTGACCTT +
Preference number: 1 (lower is better)
Translates to: LSFLGQPLYWRPCSR*RPELTEATLSTPDL
Trigger: AAGGTCAGGCGTGCTGAGTGTGGCCTCAGTCAACTCTGGTCGCCATCGAGAACACGGTCTCCAGTACAAAGGCTGGCCCAGGAAAGAAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR TCA 90 bp CATTGGGATGGGGTTGGGGATTTCCAGCATCTCCCAGTTTGCCAGTaGAGAGCCAGGACTAGAATCTGGGACACTGGTTCCAGTTCCCTC +
Preference number: 1 (lower is better)
Translates to: HWDGVGDFQHLPVCQ*RARTRIWDTGSSSL
Trigger: GAGGGAACTGGAACCAGTGTCCCAGATTCTAGTCCTGGCTCTTCACTGGCAAACTGGGAGATGCTGGAAATCCCCAACCCCATCCCAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CCA 90 bp GCTCCAGACAAGATTAGGGGTGGGAGAAATCCCCACACCATGGTCTaGGTCTTCTATGCCATCCGCTCCTTCTCTAGGACTGACCACCTA +
Preference number: 1 (lower is better)
Translates to: APDKIRGGRNPHTMV*VFYAIRSFSRTDHL
Trigger: TAGGTGGTCAGTCCTAGAGAAGGAGCGGATGGCATAGAAGACCCAGACCATGGTGTGGGGATTTCTCCCACCCCTAATCTTGTCTGGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR CCA 90 bp CAAAGGCTCCAGACAAGATTAGGGGTGGGAGAAATCCCCACACCATaGTCTGGGTCTTCTATGCCATCCGCTCCTTCTCTAGGACTGACC +
Preference number: 1 (lower is better)
Translates to: QRLQTRLGVGEIPTP*SGSSMPSAPSLGLT
Trigger: GGTCAGTCCTAGAGAAGGAGCGGATGGCATAGAAGACCCAGACCATGGTGTGGGGATTTCTCCCACCCCTAATCTTGTCTGGAGCCTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR TCA 90 bp ATCCTGGAGGAAGCTCAAGTTGCTCGCAAGGTTGTGGACTTGCCCTaGTGCCCAATGCTAACTGAGAGCACTTTAGCCGAGGCCAAGTCT +
Preference number: 1 (lower is better)
Translates to: ILEEAQVARKVVDLP*CPMLTESTLAEAKS
Trigger: AGACTTGGCCTCGGCTAAAGTGCTCTCAGTTAGCATTGGGCATCAGGGCAAGTCCACAACCTTGCGAGCAACTTGAGCTTCCTCCAGGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR GCA 90 bp AGGACTAGAATCTGGGACACTGGTTCCAGTTCCCTCCTGGGTCCCTaGCAATCTCTTTTCCTACCAGCCTTTCAGGAGAGCCTCAAAGGA +
Preference number: 1 (lower is better)
Translates to: RTRIWDTGSSSLLGP*QSLFLPAFQESLKG
Trigger: TCCTTTGAGGCTCTCCTGAAAGGCTGGTAGGAAAAGAGATTGGCAGGGACCCAGGAGGGAACTGGAACCAGTGTCCCAGATTCTAGTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CCA 90 bp CCAATGACCTCTGAGCCACAGCCATCTTCAGAGGACATCACGGCTTaGACACAGCCATCAGAGGAGCAGCAGGAAAGAAGTCACAAGTTC +
Preference number: 1 (lower is better)
Translates to: PMTSEPQPSSEDITA*TQPSEEQQERSHKF
Trigger: GAACTTGTGACTTCTTTCCTGCTGCTCCTCTGATGGCTGTGTCCAAGCCGTGATGTCCTCTGAAGATGGCTGTGGCTCAGAGGTCATTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CCA 90 bp GCTGCCATCCACAGAATAGCTAGAGACCCCTACATGGTTTCTACGTaGTCAAGAGGTATATACACAATCCCTCAAAGGTCAGGATTGAGG +
Preference number: 1 (lower is better)
Translates to: AAIHRIARDPYMVST*SRGIYTIPQRSGLR
Trigger: CCTCAATCCTGACCTTTGAGGGATTGTGTATATACCTCTTGACCACGTAGAAACCATGTAGGGGTCTCTAGCTATTCTGTGGATGGCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CCA 90 bp TTTCTTTTCGCTCATAAAGATGGGAAGATTGGGGCTGTCGTTGGTTaGTTGGTTGGTTGGTTGGTTGGTTGGTTCGGTCAGGCACCAAAA +
Preference number: 1 (lower is better)
Translates to: FLFAHKDGKIGAVVG*LVGWLVGWFGQAPK
Trigger: TTTTGGTGCCTGACCGAACCAACCAACCAACCAACCAACCAACCAACCAACGACAGCCCCAATCTTCCCATCTTTATGAGCGAAAAGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR GCA 90 bp AGGAGGTGGGTTGAGAAGAGTAAGGGGCAAAGGACAGTTAAAGAATaGCAGGAGACCTGGTATTTTCTGCACACAACTAAGAGCTACACT +
Preference number: 1 (lower is better)
Translates to: RRWVEKSKGQRTVKE*QETWYFLHTTKSYT
Trigger: AGTGTAGCTCTTAGTTGTGTGCAGAAAATACCAGGTCTCCTGGCATTCTTTAACTGTCCTTTGCCCCTTACTCTTCTCAACCCACCTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR TCA 90 bp TGGTTGGTTGGTTGGTTCGGTCAGGCACCAAAACAAGAAACTCAATaGGAAATATTTGGTGCGAGTTCAGTAATAGCGACATGTCCACCA +
Preference number: 1 (lower is better)
Translates to: WLVGWFGQAPKQETQ*EIFGASSVIATCPP
Trigger: TGGTGGACATGTCGCTATTACTGAACTCGCACCAAATATTTCTCATTGAGTTTCTTGTTTTGGTGCCTGACCGAACCAACCAACCAACCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR GCA 90 bp AGGGGCAAAGGACAGTTAAAGAATGCCAGGAGACCTGGTATTTTCTaGACACAACTAAGAGCTACACTCGAGTTAGAATTTGGCAGATTT +
Preference number: 1 (lower is better)
Translates to: RGKGQLKNARRPGIF*TQLRATLELEFGRF
Trigger: AAATCTGCCAAATTCTAACTCGAGTGTAGCTCTTAGTTGTGTGCAGAAAATACCAGGTCTCCTGGCATTCTTTAACTGTCCTTTGCCCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CAA 90 bp CCCAGCTGCCCTCTGCCTGTGCCCAGCTGGATTCGTGGCGTGGCGTaGATTGGTGTCCGAGGTGGACCTGCTGCGCCGTGGCTGCGGTTA +
Preference number: 2 (lower is better)
Translates to: PSCPLPVPSWIRGVA*IGVRGGPAAPWLRL
Trigger: TAACCGCAGCCACGGCGCAGCAGGTCCACCTCGGACACCAATCAACGCCACGCCACGAATCCAGCTGGGCACAGGCAGAGGGCAGCTGGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp ACCCTCGGCCTGGAAATGGGAGCTGCTCCAGGGCACAAGGACTCCAAGTACGTGCCAGTCCTCAGCAGCTaGGGCGCCCCCTTCCCGCCC +
Preference number: 2 (lower is better)
Translates to: TLGLEMGAAPGHKDSKYVPVLSS*GAPFPP
Trigger: GGGCGGGAAGGGGGCGCCCCAGCTGCTGAGGACTGG...CACGTACTTGGAGTCCTTGTGCCCTGGAGCAGCTCCCATTTCCAGGCCGAGGGT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR TCA 90 bp AGGAGCTCTGCGGGAGGCAGTGTCTGCCAGGCCTGGCAGTGTGGTAATTGTGCTAGGTGGTGGCGAGGGTaGCCGGGGAGACTGGGGTCC +
Preference number: 2 (lower is better)
Translates to: RSSAGGSVCQAWQCGNCARWWRG*PGRLGS
Trigger: GGACCCCAGTCTCCCCGGTCACCCTCGCCACCACCT...AGCACAATTACCACACTGCCAGGCCTGGCAGACACTGCCTCCCGCAGAGCTCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR-3UTR GCA 90 bp TGTCCGAGGTGGACCTGCTGCGCCGTGGCTGCGGTTAGGAGGCCCAACTTGTCACTCACTCGGCCTGTGTaGCAGGGCCTCGGAAGCAGG +
Preference number: 2 (lower is better)
Translates to: CPRWTCCAVAAVRRPNLSLTRPV*QGLGSR
Trigger: CCTGCTTCCGAGGCCCTGGCACACAGGCCGAGTGAG...TGACAAGTTGGGCCTCCTAACCGCAGCCACGGCGCAGCAGGTCCACCTCGGACA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR TCA 90 bp TGTCCGAGGTGGACCTGCTGCGCCGTGGCTGCGGTTAGGAGGCCCAACTTGTCAAGACGGGGCCTGGGATaGGGCAGGCAGCCATTCCTT +
Preference number: 2 (lower is better)
Translates to: CPRWTCCAVAAVRRPNLSRRGLG*GRQPFL
Trigger: AAGGAATGGCTGCCTGCCTCATCCCAGGCCCCGTCT...TGACAAGTTGGGCCTCCTAACCGCAGCCACGGCGCAGCAGGTCCACCTCGGACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp TGTCCGAGGTGGACCTGCTGCGCCGTGGCTGCGGTTAGGAGGCCCAACTTGTCACCAGAAGACGGGGCCTaGGATGAGGCAGGCAGCCAT +
Preference number: 2 (lower is better)
Translates to: CPRWTCCAVAAVRRPNLSPEDGA*DEAGSH
Trigger: ATGGCTGCCTGCCTCATCCCAGGCCCCGTCTTCTGG...TGACAAGTTGGGCCTCCTAACCGCAGCCACGGCGCAGCAGGTCCACCTCGGACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR TCA 90 bp CACTCGGCCTGTGTGCCAGGGCCTCGGAAGCAGGTGTATGTATGTGCGCACAGGAGACGGGGCCTGGGATaGGGCAGGCAGCCATTCCTT +
Preference number: 2 (lower is better)
Translates to: HSACVPGPRKQVYVCAHRRRGLG*GRQPFL
Trigger: AAGGAATGGCTGCCTGCCTCATCCCAGGCCCCGTCT...CCTGTGCGCACATACATACACCTGCTTCCGAGGCCCTGGCACACAGGCCGAGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR TCA 90 bp AGGAGCTCTGCGGGAGGCAGTGTCTGCCAGGCCTGGCAGTGTGGTAATTGTGCTCACCGGCGTGGTGGGTaGCTCCACAGGCCATCTCCA +
Preference number: 2 (lower is better)
Translates to: RSSAGGSVCQAWQCGNCAHRRGG*LHRPSP
Trigger: TGGAGATGGCCTGTGGAGTCACCCACCACGCCGGTG...AGCACAATTACCACACTGCCAGGCCTGGCAGACACTGCCTCCCGCAGAGCTCCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR-3UTR GCA 90 bp ACCCTCGGCCTGGAAATGGGAGCTGCTCCAGGGCACAAGGACTCCAAGTACGTGCTCACTCGGCCTGTGTaGCAGGGCCTCGGAAGCAGG +
Preference number: 2 (lower is better)
Translates to: TLGLEMGAAPGHKDSKYVLTRPV*QGLGSR
Trigger: CCTGCTTCCGAGGCCCTGGCACACAGGCCGAGTGAG...CACGTACTTGGAGTCCTTGTGCCCTGGAGCAGCTCCCATTTCCAGGCCGAGGGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR TCA 90 bp ACCCTCGGCCTGGAAATGGGAGCTGCTCCAGGGCACAAGGACTCCAAGTACGTGCATGGGCCTGAGGACTaGGGAGCCCACTGCAAGGTG +
Preference number: 2 (lower is better)
Translates to: TLGLEMGAAPGHKDSKYVHGPED*GAHCKV
Trigger: CACCTTGCAGTGGGCTCCTCAGTCCTCAGGCCCATG...CACGTACTTGGAGTCCTTGTGCCCTGGAGCAGCTCCCATTTCCAGGCCGAGGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR TCA 90 bp TGTCCGAGGTGGACCTGCTGCGCCGTGGCTGCGGTTAGGAGGCCCAACTTGTCAACCCCCAATGACCTCTaGGCCACAGCCATCTTCAGA +
Preference number: 2 (lower is better)
Translates to: CPRWTCCAVAAVRRPNLSTPNDL*ATAIFR
Trigger: TCTGAAGATGGCTGTGGCTCAGAGGTCATTGGGGGT...TGACAAGTTGGGCCTCCTAACCGCAGCCACGGCGCAGCAGGTCCACCTCGGACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR TCA 90 bp TGTCCGAGGTGGACCTGCTGCGCCGTGGCTGCGGTTAGGAGGCCCAACTTGTCATGGATATGGTGGATGTaGGATGCTGAGGCCTGGACC +
Preference number: 2 (lower is better)
Translates to: CPRWTCCAVAAVRRPNLSWIWWM*DAEAWT
Trigger: GGTCCAGGCCTCAGCATCTCACATCCACCATATCCA...TGACAAGTTGGGCCTCCTAACCGCAGCCACGGCGCAGCAGGTCCACCTCGGACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR GCA 90 bp CCACAGCCATCTTCAGAGGACATCACGGCTTGGACACAGCCATCAGAGGAGCAGGGAGTGAGCAGGGGCTaGTGGCTCCCAGGAACACGC +
Preference number: 2 (lower is better)
Translates to: PQPSSEDITAWTQPSEEQGVSRG*WLPGTR
Trigger: GCGTGTTCCTGGGAGCCAGCAGCCCCTGCTCACTCC...CTGCTCCTCTGATGGCTGTGTCCAAGCCGTGATGTCCTCTGAAGATGGCTGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp TGTAGCTGGAGGCATTGTCCTCCCTGGTTCAGTGTGGAACCTAGGAAAGCTACTCCAGTCCTCAGCAGCTaGGGCGCCCCCTTCCCGCCC +
Preference number: 2 (lower is better)
Translates to: CSWRHCPPWFSVEPRKATPVLSS*GAPFPP
Trigger: GGGCGGGAAGGGGGCGCCCCAGCTGCTGAGGACTGG...AGTAGCTTTCCTAGGTTCCACACTGAACCAGGGAGGACAATGCCTCCAGCTACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp TGTCCGAGGTGGACCTGCTGCGCCGTGGCTGCGGTTAGGAGGCCCAACTTGTCAGCAGTGCAAATGAGGTaGGGGAGAAGAAGTGGAGGG +
Preference number: 2 (lower is better)
Translates to: CPRWTCCAVAAVRRPNLSAVQMR*GRRSGG
Trigger: CCCTCCACTTCTTCTCCCCCACCTCATTTGCACTGC...TGACAAGTTGGGCCTCCTAACCGCAGCCACGGCGCAGCAGGTCCACCTCGGACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp TACGCGCGCGCAGGAGATGAAACACAAGGGGGACCTGACAGACGTTGCTACAGCGGGGTCCTTGGCAGGTaGAGGAACAACGTGCAGCCC +
Preference number: 2 (lower is better)
Translates to: YARAGDETQGGPDRRCYSGVLGR*RNNVQP
Trigger: GGGCTGCACGTTGTTCCTCCACCTGCCAAGGACCCC...GCTGTAGCAACGTCTGTCAGGTCCCCCTTGTGTTTCATCTCCTGCGCGCGCGTA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR TCA 90 bp CACTCGGCCTGTGTGCCAGGGCCTCGGAAGCAGGTGTATGTATGTGCGCACAGGCTCAAAGGTCAGGATTaGGGGGCCGATCACCAGCTA +
Preference number: 2 (lower is better)
Translates to: HSACVPGPRKQVYVCAHRLKGQD*GADHQL
Trigger: TAGCTGGTGATCGGCCCCTCAATCCTGACCTTTGAG...CCTGTGCGCACATACATACACCTGCTTCCGAGGCCCTGGCACACAGGCCGAGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR TCA 90 bp TGTCCGAGGTGGACCTGCTGCGCCGTGGCTGCGGTTAGGAGGCCCAACTTGTCAGTTGTGGACTTGCCCTaGTGCCCAATGCTAACTGAG +
Preference number: 2 (lower is better)
Translates to: CPRWTCCAVAAVRRPNLSVVDLP*CPMLTE
Trigger: CTCAGTTAGCATTGGGCATCAGGGCAAGTCCACAAC...TGACAAGTTGGGCCTCCTAACCGCAGCCACGGCGCAGCAGGTCCACCTCGGACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR TCA 90 bp AGGAGCTCTGCGGGAGGCAGTGTCTGCCAGGCCTGGCAGTGTGGTAATTGTGCTGTGGATGTGAGATGCTaGGGCCTGGACCTGCCTCAT +
Preference number: 2 (lower is better)
Translates to: RSSAGGSVCQAWQCGNCAVDVRC*GLDLPH
Trigger: ATGAGGCAGGTCCAGGCCTCAGCATCTCACATCCAC...AGCACAATTACCACACTGCCAGGCCTGGCAGACACTGCCTCCCGCAGAGCTCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR-3UTR GCA 90 bp AAAGAGTTTAAGAATGCTTGCACGGAGGCTGGGGGCCTTTGCGGGAGAGGAGCTGGAGTGAGCAGGGGCTaGTGGCTCCCAGGAACACGC +
Preference number: 2 (lower is better)
Translates to: KEFKNACTEAGGLCGRGAGVSRG*WLPGTR
Trigger: GCGTGTTCCTGGGAGCCAGCAGCCCCTGCTCACTCC...AGCTCCTCTCCCGCAAAGGCCCCCAGCCTCCGTGCAAGCATTCTTAAACTCTTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CAA 90 bp GTCACAGCTGAGGACGCTGAGGCCCAGCAAGCCATTGGGATGGGGTaGGGGATTTCCAGCATCTCCCAGTTTGCCAGTGAAGAGCCAGGA +
Preference number: 2 (lower is better)
Translates to: VTAEDAEAQQAIGMG*GISSISQFASEEPG
Trigger: TCCTGGCTCTTCACTGGCAAACTGGGAGATGCTGGAAATCCCCAACCCCATCCCAATGGCTTGCTGGGCCTCAGCGTCCTCAGCTGTGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR TCA 90 bp AAAGAGTTTAAGAATGCTTGCACGGAGGCTGGGGGCCTTTGCGGGAGAGGAGCTCATGGGCCTGAGGACTaGGGAGCCCACTGCAAGGTG +
Preference number: 2 (lower is better)
Translates to: KEFKNACTEAGGLCGRGAHGPED*GAHCKV
Trigger: CACCTTGCAGTGGGCTCCTCAGTCCTCAGGCCCATG...AGCTCCTCTCCCGCAAAGGCCCCCAGCCTCCGTGCAAGCATTCTTAAACTCTTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR TCA 90 bp CCATTGGGATGGGGTTGGGGATTTCCAGCATCTCCCAGTTTGCCAGTGAAGAGCGCTAAGCCATGGGCCTaGGGACTGAGGAGCCCACTG +
Preference number: 2 (lower is better)
Translates to: PLGWGWGFPASPSLPVKSAKPWA*GLRSPL
Trigger: CAGTGGGCTCCTCAGTCCTCAGGCCCATGGCTTAGC...GCTCTTCACTGGCAAACTGGGAGATGCTGGAAATCCCCAACCCCATCCCAATGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR TCA 90 bp AGGAGCTCTGCGGGAGGCAGTGTCTGCCAGGCCTGGCAGTGTGGTAATTGTGCTCCTCAGAGACTCCCCTaGGAGAACCGAAAGCACATC +
Preference number: 2 (lower is better)
Translates to: RSSAGGSVCQAWQCGNCAPQRLP*ENRKHI
Trigger: GATGTGCTTTCGGTTCTCTCAGGGGAGTCTCTGAGG...AGCACAATTACCACACTGCCAGGCCTGGCAGACACTGCCTCCCGCAGAGCTCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR-3UTR TCA 90 bp GCAGGAGATGAAACACAAGGGGGACCTGACAGACGTTGCTACAGCCCCACGCGGCCTCAGAGACTCCCCTaGGAGAACCGAAAGCACATC +
Preference number: 2 (lower is better)
Translates to: AGDETQGGPDRRCYSPTRPQRLP*ENRKHI
Trigger: GATGTGCTTTCGGTTCTCTCAGGGGAGTCTCTGAGG...CCGCGTGGGGCTGTAGCAACGTCTGTCAGGTCCCCCTTGTGTTTCATCTCCTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR GCA 90 bp TACGCGCGCGCAGGAGATGAAACACAAGGGGGACCTGACAGACGTTGCTACAGCTTCCTCAACACCTGCTaGCCCCCTACCCCAATAGGC +
Preference number: 2 (lower is better)
Translates to: YARAGDETQGGPDRRCYSFLNTC*PPTPIG
Trigger: GCCTATTGGGGTAGGGGGGCAGCAGGTGTTGAGGAA...GCTGTAGCAACGTCTGTCAGGTCCCCCTTGTGTTTCATCTCCTGCGCGCGCGTA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp GCAGGAGATGAAACACAAGGGGGACCTGACAGACGTTGCTACAGCCCCACGCGGGGTTGGTTGGTTGGTTaGTTGGTTCGGTCAGGCACC +
Preference number: 2 (lower is better)
Translates to: AGDETQGGPDRRCYSPTRGWLVG*LVRSGT
Trigger: GGTGCCTGACCGAACCAACCAACCAACCAACCAACC...CCGCGTGGGGCTGTAGCAACGTCTGTCAGGTCCCCCTTGTGTTTCATCTCCTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp AAAGAGTTTAAGAATGCTTGCACGGAGGCTGGGGGCCTTTGCGGGAGAGGAGCTAACCCCCTCACTGGCTaGGGTTCTGCCCTCCTCACC +
Preference number: 2 (lower is better)
Translates to: KEFKNACTEAGGLCGRGANPLTG*GSALLT
Trigger: GGTGAGGAGGGCAGAACCCCAGCCAGTGAGGGGGTT...AGCTCCTCTCCCGCAAAGGCCCCCAGCCTCCGTGCAAGCATTCTTAAACTCTTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp TGTCCGAGGTGGACCTGCTGCGCCGTGGCTGCGGTTAGGAGGCCCAACTTGTCACTCCCTGGTTCAGTGTaGAACCTAGGAAAGCTACTG +
Preference number: 2 (lower is better)
Translates to: CPRWTCCAVAAVRRPNLSLPGSV*NLGKLL
Trigger: CAGTAGCTTTCCTAGGTTCCACACTGAACCAGGGAG...TGACAAGTTGGGCCTCCTAACCGCAGCCACGGCGCAGCAGGTCCACCTCGGACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp TGTCCGAGGTGGACCTGCTGCGCCGTGGCTGCGGTTAGGAGGCCCAACTTGTCACCTGACTTTCTTTCCTaGGCCAGCCTTTGTACTGGA +
Preference number: 2 (lower is better)
Translates to: CPRWTCCAVAAVRRPNLSPDFLS*ASLCTG
Trigger: TCCAGTACAAAGGCTGGCCCAGGAAAGAAAGTCAGG...TGACAAGTTGGGCCTCCTAACCGCAGCCACGGCGCAGCAGGTCCACCTCGGACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp GCAGGAGATGAAACACAAGGGGGACCTGACAGACGTTGCTACAGCCCCACGCGGACTGGGCAGAGGCACTaGCTTTTCTCCACCCAATCG +
Preference number: 2 (lower is better)
Translates to: AGDETQGGPDRRCYSPTRTGQRH*LFSTQS
Trigger: CGATTGGGTGGAGAAAAGCCAGTGCCTCTGCCCAGT...CCGCGTGGGGCTGTAGCAACGTCTGTCAGGTCCCCCTTGTGTTTCATCTCCTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR TCA 90 bp GCAGGAGATGAAACACAAGGGGGACCTGACAGACGTTGCTACAGCCCCACGCGGGTTGTGGACTTGCCCTaGTGCCCAATGCTAACTGAG +
Preference number: 2 (lower is better)
Translates to: AGDETQGGPDRRCYSPTRVVDLP*CPMLTE
Trigger: CTCAGTTAGCATTGGGCATCAGGGCAAGTCCACAAC...CCGCGTGGGGCTGTAGCAACGTCTGTCAGGTCCCCCTTGTGTTTCATCTCCTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR TCA 90 bp CCACAGCCATCTTCAGAGGACATCACGGCTTGGACACAGCCATCAGAGGAGCAGGGCCGAGACATCGCCTaGGTGATCACCTTCCTCAAC +
Preference number: 2 (lower is better)
Translates to: PQPSSEDITAWTQPSEEQGRDIA*VITFLN
Trigger: GTTGAGGAAGGTGATCACTCAGGCGATGTCTCGGCC...CTGCTCCTCTGATGGCTGTGTCCAAGCCGTGATGTCCTCTGAAGATGGCTGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR TCA 90 bp GCAGGAGATGAAACACAAGGGGGACCTGACAGACGTTGCTACAGCCCCACGCGGCTCCCAGTTTGCCAGTaGAGAGCCAGGACTAGAATC +
Preference number: 2 (lower is better)
Translates to: AGDETQGGPDRRCYSPTRLPVCQ*RARTRI
Trigger: GATTCTAGTCCTGGCTCTTCACTGGCAAACTGGGAG...CCGCGTGGGGCTGTAGCAACGTCTGTCAGGTCCCCCTTGTGTTTCATCTCCTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR GCA 90 bp TACGCGCGCGCAGGAGATGAAACACAAGGGGGACCTGACAGACGTTGCTACAGCAAGGCAAAGTTTGGCTaGAAGGGCTATGGCCGTGGG +
Preference number: 2 (lower is better)
Translates to: YARAGDETQGGPDRRCYSKAKFG*KGYGRG
Trigger: CCCACGGCCATAGCCCTTGCAGCCAAACTTTGCCTT...GCTGTAGCAACGTCTGTCAGGTCCCCCTTGTGTTTCATCTCCTGCGCGCGCGTA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR GCA 90 bp GCAGGAGATGAAACACAAGGGGGACCTGACAGACGTTGCTACAGCCCCACGCGGGCAGGTGTATGTATGTaGGCACAGGAGACCTCTCAG +
Preference number: 2 (lower is better)
Translates to: AGDETQGGPDRRCYSPTRAGVCM*AQETSQ
Trigger: CTGAGAGGTCTCCTGTGCGCACATACATACACCTGC...CCGCGTGGGGCTGTAGCAACGTCTGTCAGGTCCCCCTTGTGTTTCATCTCCTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR TCA 90 bp CCCTACCCCAATAGGCAGTCCACAGAGATTGAAGGACACACCAGAAGACGGGGCCATGTCCACCACAGATaGCGAGAGCACCACACACGA +
Preference number: 2 (lower is better)
Translates to: PYPNRQSTEIEGHTRRRGHVHHR*REHHTR
Trigger: TCGTGTGTGGTGCTCTCGTCATCTGTGGTGGACATG...GCCCCGTCTTCTGGTGTGTCCTTCAATCTCTGTGGACTGCCTATTGGGGTAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR TCA 90 bp CCCAATAGGCAGTCCACAGAGATTGAAGGACACACCAGAAGACGGGGCCTGGGACCTCCTCACCTTGCCTaGAAGCCTCAGAAACCCAGT +
Preference number: 2 (lower is better)
Translates to: PNRQSTEIEGHTRRRGLGPPHLA*KPQKPS
Trigger: ACTGGGTTTCTGAGGCTTTCAGGCAAGGTGAGGAGG...TCCCAGGCCCCGTCTTCTGGTGTGTCCTTCAATCTCTGTGGACTGCCTATTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR TCA 90 bp CCACAGCCATCTTCAGAGGACATCACGGCTTGGACACAGCCATCAGAGGAGCAGCGAGAGCAGTGCAAATaGGGTGGGGGAGAAGAAGTG +
Preference number: 2 (lower is better)
Translates to: PQPSSEDITAWTQPSEEQREQCK*GGGEEV
Trigger: CACTTCTTCTCCCCCACCTCATTTGCACTGCTCTCG...CTGCTCCTCTGATGGCTGTGTCCAAGCCGTGATGTCCTCTGAAGATGGCTGTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR TCA 90 bp GCAGGAGATGAAACACAAGGGGGACCTGACAGACGTTGCTACAGCCCCACGCGGAGCTTTCTAACACCCTaGCTTTCTTTCCTGGGCCAG +
Preference number: 2 (lower is better)
Translates to: AGDETQGGPDRRCYSPTRSFLTP*LSFLGQ
Trigger: CTGGCCCAGGAAAGAAAGTCAGGGTGTTAGAAAGCT...CCGCGTGGGGCTGTAGCAACGTCTGTCAGGTCCCCCTTGTGTTTCATCTCCTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp CAGCTGCACAGCAAGGCGATGAGGCAGTCACCATTCCTGATGGGTGGGTCTTCCTCAGAAGGCAAAGTTTaGCTGCAAGGGCTATGGCCG +
Preference number: 2 (lower is better)
Translates to: QLHSKAMRQSPFLMGGSSSEGKV*LQGLWP
Trigger: CGGCCATAGCCCTTGCAGCCAAACTTTGCCTTCTGA...GGAAGACCCACCCATCAGGAATGGTGACTGCCTCATCGCCTTGCTGTGCAGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp CCATTGGGATGGGGTTGGGGATTTCCAGCATCTCCCAGTTTGCCAGTGAAGAGCACCATTCCTGATGGGTaGGTCTTCCCACCCTACCCC +
Preference number: 2 (lower is better)
Translates to: PLGWGWGFPASPSLPVKSTIPDG*VFPPYP
Trigger: GGGGTAGGGTGGGAAGACCCACCCATCAGGAATGGT...GCTCTTCACTGGCAAACTGGGAGATGCTGGAAATCCCCAACCCCATCCCAATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp TACGCGCGCGCAGGAGATGAAACACAAGGGGGACCTGACAGACGTTGCTACAGCAGCAAGCCATTGGGATaGGGTTGGGGATTTCCAGCA +
Preference number: 2 (lower is better)
Translates to: YARAGDETQGGPDRRCYSSKPLG*GWGFPA
Trigger: TGCTGGAAATCCCCAACCCCATCCCAATGGCTTGCT...GCTGTAGCAACGTCTGTCAGGTCCCCCTTGTGTTTCATCTCCTGCGCGCGCGTA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp CTGCGGTTAGGAGGCCCAACTTGTCAAAGGCACTCATGCGTCTCAGTCAGAAAACCCTCGGCCTGGAAATaGGAGCTGCTCCAGGGCACA +
Preference number: 2 (lower is better)
Translates to: LRLGGPTCQRHSCVSVRKPSAWK*ELLQGT
Trigger: TGTGCCCTGGAGCAGCTCCCATTTCCAGGCCGAGGG...TTTTCTGACTGAGACGCATGAGTGCCTTTGACAAGTTGGGCCTCCTAACCGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR TCA 90 bp GCAGGAGATGAAACACAAGGGGGACCTGACAGACGTTGCTACAGCCCCACGCGGGAAGGAGACGGAAACTaGGGCACAGAGAAAGAAAAG +
Preference number: 2 (lower is better)
Translates to: AGDETQGGPDRRCYSPTREGDGN*GTEKEK
Trigger: CTTTTCTTTCTCTGTGCCTCAGTTTCCGTCTCCTTC...CCGCGTGGGGCTGTAGCAACGTCTGTCAGGTCCCCCTTGTGTTTCATCTCCTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR TCA 90 bp TACGCGCGCGCAGGAGATGAAACACAAGGGGGACCTGACAGACGTTGCTACAGCAGCTTTCTAACACCCTaGCTTTCTTTCCTGGGCCAG +
Preference number: 2 (lower is better)
Translates to: YARAGDETQGGPDRRCYSSFLTP*LSFLGQ
Trigger: CTGGCCCAGGAAAGAAAGTCAGGGTGTTAGAAAGCT...GCTGTAGCAACGTCTGTCAGGTCCCCCTTGTGTTTCATCTCCTGCGCGCGCGTA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR GCA 90 bp GCAGGAGATGAAACACAAGGGGGACCTGACAGACGTTGCTACAGCCCCACGCGGTGTCAAAGGCACTCATaGGTCTCAGTCAGAAAAGGG +
Preference number: 2 (lower is better)
Translates to: AGDETQGGPDRRCYSPTRCQRHS*VSVRKG
Trigger: CCCTTTTCTGACTGAGACGCATGAGTGCCTTTGACA...CCGCGTGGGGCTGTAGCAACGTCTGTCAGGTCCCCCTTGTGTTTCATCTCCTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp CACTCGGCCTGTGTGCCAGGGCCTCGGAAGCAGGTGTATGTATGTGCGCACAGGTACATTGCCTCTTTGTaGCAAGATGAGAGCTCAGGA +
Preference number: 2 (lower is better)
Translates to: HSACVPGPRKQVYVCAHRYIASL*QDESSG
Trigger: TCCTGAGCTCTCATCTTGCCACAAAGAGGCAATGTA...CCTGTGCGCACATACATACACCTGCTTCCGAGGCCCTGGCACACAGGCCGAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp TACGCGCGCGCAGGAGATGAAACACAAGGGGGACCTGACAGACGTTGCTACAGCGTTCTTTCTCCCCACTaGAAGGAGACGGAAACTGAG +
Preference number: 2 (lower is better)
Translates to: YARAGDETQGGPDRRCYSVLSPH*KETETE
Trigger: CTCAGTTTCCGTCTCCTTCCAGTGGGGAGAAAGAAC...GCTGTAGCAACGTCTGTCAGGTCCCCCTTGTGTTTCATCTCCTGCGCGCGCGTA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR TCA 90 bp CGGTTAGGAGGCCCAACTTGTCAAAGGCACTCATGCGTCTCAGTCAGAAAAGGGCATGTCCACCACAGATaGCGAGAGCACCACACACGA +
Preference number: 2 (lower is better)
Translates to: RLGGPTCQRHSCVSVRKGHVHHR*REHHTR
Trigger: TCGTGTGTGGTGCTCTCGTCATCTGTGGTGGACATG...CCCTTTTCTGACTGAGACGCATGAGTGCCTTTGACAAGTTGGGCCTCCTAACCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR GCA 90 bp CGGTTAGGAGGCCCAACTTGTCAAAGGCACTCATGCGTCTCAGTCAGAAAAGGGAAGGCAAAGTTTGGCTaGAAGGGCTATGGCCGTGGG +
Preference number: 2 (lower is better)
Translates to: RLGGPTCQRHSCVSVRKGKAKFG*KGYGRG
Trigger: CCCACGGCCATAGCCCTTGCAGCCAAACTTTGCCTT...CCCTTTTCTGACTGAGACGCATGAGTGCCTTTGACAAGTTGGGCCTCCTAACCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp CCCTACCCCAATAGGCAGTCCACAGAGATTGAAGGACACACCAGAAGACGGGGCGTTCTTTCTCCCCACTaGAAGGAGACGGAAACTGAG +
Preference number: 2 (lower is better)
Translates to: PYPNRQSTEIEGHTRRRGVLSPH*KETETE
Trigger: CTCAGTTTCCGTCTCCTTCCAGTGGGGAGAAAGAAC...GCCCCGTCTTCTGGTGTGTCCTTCAATCTCTGTGGACTGCCTATTGGGGTAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp CCCTACCCCAATAGGCAGTCCACAGAGATTGAAGGACACACCAGAAGACGGGGCGCCATTCCTTCACGATaGTTGTCCTGGAAGGATCTC +
Preference number: 2 (lower is better)
Translates to: PYPNRQSTEIEGHTRRRGAIPSR*LSWKDL
Trigger: GAGATCCTTCCAGGACAACCATCGTGAAGGAATGGC...GCCCCGTCTTCTGGTGTGTCCTTCAATCTCTGTGGACTGCCTATTGGGGTAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR TCA 90 bp CGGTTAGGAGGCCCAACTTGTCAAAGGCACTCATGCGTCTCAGTCAGAAAAGGGGAGACATCGCCTGAGTaGTCACCTTCCTCAACACCT +
Preference number: 2 (lower is better)
Translates to: RLGGPTCQRHSCVSVRKGETSPE*SPSSTP
Trigger: AGGTGTTGAGGAAGGTGATCACTCAGGCGATGTCTC...CCCTTTTCTGACTGAGACGCATGAGTGCCTTTGACAAGTTGGGCCTCCTAACCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR TCA 90 bp CTGCGGTTAGGAGGCCCAACTTGTCAAAGGCACTCATGCGTCTCAGTCAGAAAAACCCCCAATGACCTCTaGGCCACAGCCATCTTCAGA +
Preference number: 2 (lower is better)
Translates to: LRLGGPTCQRHSCVSVRKTPNDL*ATAIFR
Trigger: TCTGAAGATGGCTGTGGCTCAGAGGTCATTGGGGGT...TTTTCTGACTGAGACGCATGAGTGCCTTTGACAAGTTGGGCCTCCTAACCGCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp GCGGTACAGAAAGCATACACTAATACTGTGTCACTTGGGACTTTCCGTCTCCTTAACCCCCTCACTGGCTaGGGTTCTGCCCTCCTCACC +
Preference number: 2 (lower is better)
Translates to: AVQKAYTNTVSLGTFRLLNPLTG*GSALLT
Trigger: GGTGAGGAGGGCAGAACCCCAGCCAGTGAGGGGGTT...AAGGAGACGGAAAGTCCCAAGTGACACAGTATTAGTGTATGCTTTCTGTACCGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp AAAGAGTTTAAGAATGCTTGCACGGAGGCTGGGGGCCTTTGCGGGAGAGGAGCTTGCATAGGGAGGCAGTaGCTACATTGCCTCTTTGTG +
Preference number: 2 (lower is better)
Translates to: KEFKNACTEAGGLCGRGACIGRQ*LHCLFV
Trigger: CACAAAGAGGCAATGTAGCCACTGCCTCCCTATGCA...AGCTCCTCTCCCGCAAAGGCCCCCAGCCTCCGTGCAAGCATTCTTAAACTCTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp CCATCAGAGGAGCAGCAGGAAAGAAGTCACAAGTTCTTGTGGCTTTTGGTCGGCGCAGTGCAAATGAGGTaGGGGAGAAGAAGTGGAGGG +
Preference number: 2 (lower is better)
Translates to: PSEEQQERSHKFLWLLVGAVQMR*GRRSGG
Trigger: CCCTCCACTTCTTCTCCCCCACCTCATTTGCACTGC...GCCGACCAAAAGCCACAAGAACTTGTGACTTCTTTCCTGCTGCTCCTCTGATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp CCATTGGGATGGGGTTGGGGATTTCCAGCATCTCCCAGTTTGCCAGTGAAGAGCAAGGAAAGAACAGAGTaGCCTCAGAGAGGAGTGACC +
Preference number: 2 (lower is better)
Translates to: PLGWGWGFPASPSLPVKSKERTE*PQRGVT
Trigger: GGTCACTCCTCTCTGAGGCCACTCTGTTCTTTCCTT...GCTCTTCACTGGCAAACTGGGAGATGCTGGAAATCCCCAACCCCATCCCAATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR TCA 90 bp CCATTGGGATGGGGTTGGGGATTTCCAGCATCTCCCAGTTTGCCAGTGAAGAGCGAAGGAGACGGAAACTaGGGCACAGAGAAAGAAAAG +
Preference number: 2 (lower is better)
Translates to: PLGWGWGFPASPSLPVKSEGDGN*GTEKEK
Trigger: CTTTTCTTTCTCTGTGCCTCAGTTTCCGTCTCCTTC...GCTCTTCACTGGCAAACTGGGAGATGCTGGAAATCCCCAACCCCATCCCAATGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR TCA 90 bp AAAGAGTTTAAGAATGCTTGCACGGAGGCTGGGGGCCTTTGCGGGAGAGGAGCTTACCATTTCCTGCTCTaGGCATACGAGGACACTAAG +
Preference number: 2 (lower is better)
Translates to: KEFKNACTEAGGLCGRGAYHFLL*AYEDTK
Trigger: CTTAGTGTCCTCGTATGCTCAGAGCAGGAAATGGTA...AGCTCCTCTCCCGCAAAGGCCCCCAGCCTCCGTGCAAGCATTCTTAAACTCTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR TCA 90 bp CTGCGGTTAGGAGGCCCAACTTGTCAAAGGCACTCATGCGTCTCAGTCAGAAAACTCCCAGTTTGCCAGTaGAGAGCCAGGACTAGAATC +
Preference number: 2 (lower is better)
Translates to: LRLGGPTCQRHSCVSVRKLPVCQ*RARTRI
Trigger: GATTCTAGTCCTGGCTCTTCACTGGCAAACTGGGAG...TTTTCTGACTGAGACGCATGAGTGCCTTTGACAAGTTGGGCCTCCTAACCGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR TCA 90 bp AGGAGCTCTGCGGGAGGCAGTGTCTGCCAGGCCTGGCAGTGTGGTAATTGTGCTCTTTTTCTTCACCGTTaGAAAAACTGTGCTTGTTCG +
Preference number: 2 (lower is better)
Translates to: RSSAGGSVCQAWQCGNCALFLHR*KNCACS
Trigger: CGAACAAGCACAGTTTTTTCAACGGTGAAGAAAAAG...AGCACAATTACCACACTGCCAGGCCTGGCAGACACTGCCTCCCGCAGAGCTCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR-3UTR GCA 90 bp CTGCGGTTAGGAGGCCCAACTTGTCAAAGGCACTCATGCGTCTCAGTCAGAAAATCCCTCCTGGGTCCCTaGCAATCTCTTTTCCTACCA +
Preference number: 2 (lower is better)
Translates to: LRLGGPTCQRHSCVSVRKSLLGP*QSLFLP
Trigger: TGGTAGGAAAAGAGATTGGCAGGGACCCAGGAGGGA...TTTTCTGACTGAGACGCATGAGTGCCTTTGACAAGTTGGGCCTCCTAACCGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR GCA 90 bp GCAGGAGATGAAACACAAGGGGGACCTGACAGACGTTGCTACAGCCCCACGCGGGGAAAACAAGTCTGGTaGTTTTTCTTCACCGTTGAA +
Preference number: 2 (lower is better)
Translates to: AGDETQGGPDRRCYSPTRGKQVW*FFFTVE
Trigger: TTCAACGGTGAAGAAAAAGCACCAGACTTGTTTTCC...CCGCGTGGGGCTGTAGCAACGTCTGTCAGGTCCCCCTTGTGTTTCATCTCCTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp CTGCGGTTAGGAGGCCCAACTTGTCAAAGGCACTCATGCGTCTCAGTCAGAAAATCAGAAGGCAAAGTTTaGCTGCAAGGGCTATGGCCG +
Preference number: 2 (lower is better)
Translates to: LRLGGPTCQRHSCVSVRKSEGKV*LQGLWP
Trigger: CGGCCATAGCCCTTGCAGCCAAACTTTGCCTTCTGA...TTTTCTGACTGAGACGCATGAGTGCCTTTGACAAGTTGGGCCTCCTAACCGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp CCATTGGGATGGGGTTGGGGATTTCCAGCATCTCCCAGTTTGCCAGTGAAGAGCCTAGAGACCCCTACATaGTTTCTACGTGGTCAAGAG +
Preference number: 2 (lower is better)
Translates to: PLGWGWGFPASPSLPVKSLETPT*FLRGQE
Trigger: CTCTTGACCACGTAGAAACCATGTAGGGGTCTCTAG...GCTCTTCACTGGCAAACTGGGAGATGCTGGAAATCCCCAACCCCATCCCAATGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp AAAGAGTTTAAGAATGCTTGCACGGAGGCTGGGGGCCTTTGCGGGAGAGGAGCTTCACGATGGTTGTCCTaGAAGGATCTCTCTCAAGTC +
Preference number: 2 (lower is better)
Translates to: KEFKNACTEAGGLCGRGASRWLS*KDLSQV
Trigger: GACTTGAGAGAGATCCTTCCAGGACAACCATCGTGA...AGCTCCTCTCCCGCAAAGGCCCCCAGCCTCCGTGCAAGCATTCTTAAACTCTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR TCA 90 bp CCCAATAGGCAGTCCACAGAGATTGAAGGACACACCAGAAGACGGGGCCTGGGACGATGCTGTGCCGTCTaGTTCATCTGGTTAATATTT +
Preference number: 2 (lower is better)
Translates to: PNRQSTEIEGHTRRRGLGRCCAV*FIWLIF
Trigger: AAATATTAACCAGATGAATCAGACGGCACAGCATCG...TCCCAGGCCCCGTCTTCTGGTGTGTCCTTCAATCTCTGTGGACTGCCTATTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR GCA 90 bp ACCCTCGGCCTGGAAATGGGAGCTGCTCCAGGGCACAAGGACTCCAAGTACGTGATGAGAAATATTTGGTaGGAGTTCAGTAATAGCGAC +
Preference number: 2 (lower is better)
Translates to: TLGLEMGAAPGHKDSKYVMRNIW*EFSNSD
Trigger: GTCGCTATTACTGAACTCGCACCAAATATTTCTCAT...CACGTACTTGGAGTCCTTGTGCCCTGGAGCAGCTCCCATTTCCAGGCCGAGGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp CCATCAGAGGAGCAGCAGGAAAGAAGTCACAAGTTCTTGTGGCTTTTGGTCGGCCTCCCTGGTTCAGTGTaGAACCTAGGAAAGCTACTG +
Preference number: 2 (lower is better)
Translates to: PSEEQQERSHKFLWLLVGLPGSV*NLGKLL
Trigger: CAGTAGCTTTCCTAGGTTCCACACTGAACCAGGGAG...GCCGACCAAAAGCCACAAGAACTTGTGACTTCTTTCCTGCTGCTCCTCTGATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR TCA 90 bp GCGGTACAGAAAGCATACACTAATACTGTGTCACTTGGGACTTTCCGTCTCCTTCTCAAAGGTCAGGATTaGGGGGCCGATCACCAGCTA +
Preference number: 2 (lower is better)
Translates to: AVQKAYTNTVSLGTFRLLLKGQD*GADHQL
Trigger: TAGCTGGTGATCGGCCCCTCAATCCTGACCTTTGAG...AAGGAGACGGAAAGTCCCAAGTGACACAGTATTAGTGTATGCTTTCTGTACCGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR TCA 90 bp AAAGAGTTTAAGAATGCTTGCACGGAGGCTGGGGGCCTTTGCGGGAGAGGAGCTCGATGCTGTGCCGTCTaGTTCATCTGGTTAATATTT +
Preference number: 2 (lower is better)
Translates to: KEFKNACTEAGGLCGRGARCCAV*FIWLIF
Trigger: AAATATTAACCAGATGAATCAGACGGCACAGCATCG...AGCTCCTCTCCCGCAAAGGCCCCCAGCCTCCGTGCAAGCATTCTTAAACTCTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR TCA 90 bp CCAGGTCCTAATGTTAGCCTGGAGCGTTCAAAGAGCCTGAACAAAAAGGAAGCAGAGACATCGCCTGAGTaGTCACCTTCCTCAACACCT +
Preference number: 2 (lower is better)
Translates to: PGPNVSLERSKSLNKKEAETSPE*SPSSTP
Trigger: AGGTGTTGAGGAAGGTGATCACTCAGGCGATGTCTC...TGCTTCCTTTTTGTTCAGGCTCTTTGAACGCTCCAGGCTAACATTAGGACCTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp TGTAGCTGGAGGCATTGTCCTCCCTGGTTCAGTGTGGAACCTAGGAAAGCTACTCTAGAGACCCCTACATaGTTTCTACGTGGTCAAGAG +
Preference number: 2 (lower is better)
Translates to: CSWRHCPPWFSVEPRKATLETPT*FLRGQE
Trigger: CTCTTGACCACGTAGAAACCATGTAGGGGTCTCTAG...AGTAGCTTTCCTAGGTTCCACACTGAACCAGGGAGGACAATGCCTCCAGCTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp CCATCAGAGGAGCAGCAGGAAAGAAGTCACAAGTTCTTGTGGCTTTTGGTCGGCAAAGCACATCAGGGCTaGAGGGTGTTAACTCTCAGA +
Preference number: 2 (lower is better)
Translates to: PSEEQQERSHKFLWLLVGKAHQG*RVLTLR
Trigger: TCTGAGAGTTAACACCCTCCAGCCCTGATGTGCTTT...GCCGACCAAAAGCCACAAGAACTTGTGACTTCTTTCCTGCTGCTCCTCTGATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp CTGCGGTTAGGAGGCCCAACTTGTCAAAGGCACTCATGCGTCTCAGTCAGAAAAAAAGCACATCAGGGCTaGAGGGTGTTAACTCTCAGA +
Preference number: 2 (lower is better)
Translates to: LRLGGPTCQRHSCVSVRKKAHQG*RVLTLR
Trigger: TCTGAGAGTTAACACCCTCCAGCCCTGATGTGCTTT...TTTTCTGACTGAGACGCATGAGTGCCTTTGACAAGTTGGGCCTCCTAACCGCAG
50% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CAA 90 bp TCTACGTGGTCAAGAGGTATATACACAATCCCTCAAAGGTCAGGATaGAGGGGCCGATCACCAGCTAGTACCCTCGAGATAACATCCAGT +
Preference number: 2 (lower is better)
Translates to: STWSRGIYTIPQRSG*RGRSPASTLEITSS
Trigger: ACTGGATGTTATCTCGAGGGTACTAGCTGGTGATCGGCCCCTCAATCCTGACCTTTGAGGGATTGTGTATATACCTCTTGACCACGTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR TCA 90 bp GTTTGTTTGTTTCGCAGTTGTCATCGTACCAACGCATGCAAAGCATTCCACTCCATGCCCAATGCTAACTaGGAGCACTTTAGCCGAGGC +
Preference number: 2 (lower is better)
Translates to: VCLFRSCHRTNACKAFHSMPNAN*EHFSRG
Trigger: GCCTCGGCTAAAGTGCTCTCAGTTAGCATTGGGCAT...GGAGTGGAATGCTTTGCATGCGTTGGTACGATGACAACTGCGAAACAAACAAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR-3UTR TCA 90 bp GTTTGTTTGTTTCGCAGTTGTCATCGTACCAACGCATGCAAAGCATTCCACTCCGCAGTCCACAGAGATTaGAGGACACACCAGAAGACG +
Preference number: 2 (lower is better)
Translates to: VCLFRSCHRTNACKAFHSAVHRD*RTHQKT
Trigger: CGTCTTCTGGTGTGTCCTTCAATCTCTGTGGACTGC...GGAGTGGAATGCTTTGCATGCGTTGGTACGATGACAACTGCGAAACAAACAAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR-3UTR GCA 90 bp AAAGAGTTTAAGAATGCTTGCACGGAGGCTGGGGGCCTTTGCGGGAGAGGAGCTAGGACAGTTAAAGAATaGCAGGAGACCTGGTATTTT +
Preference number: 2 (lower is better)
Translates to: KEFKNACTEAGGLCGRGARTVKE*QETWYF
Trigger: AAAATACCAGGTCTCCTGGCATTCTTTAACTGTCCT...AGCTCCTCTCCCGCAAAGGCCCCCAGCCTCCGTGCAAGCATTCTTAAACTCTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp CCAGGTCCTAATGTTAGCCTGGAGCGTTCAAAGAGCCTGAACAAAAAGGAAGCAGGTTGGTTGGTTGGTTaGTTCGGTCAGGCACCAAAA +
Preference number: 2 (lower is better)
Translates to: PGPNVSLERSKSLNKKEAGWLVG*FGQAPK
Trigger: TTTTGGTGCCTGACCGAACCAACCAACCAACCAACC...TGCTTCCTTTTTGTTCAGGCTCTTTGAACGCTCCAGGCTAACATTAGGACCTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR GCA 90 bp CCATCAGAGGAGCAGCAGGAAAGAAGTCACAAGTTCTTGTGGCTTTTGGTCGGCCCCTCTTACACTCCGTaGACTGTAAACATGAGAAAA +
Preference number: 2 (lower is better)
Translates to: PSEEQQERSHKFLWLLVGPSYTP*TVNMRK
Trigger: TTTTCTCATGTTTACAGTGCACGGAGTGTAAGAGGG...GCCGACCAAAAGCCACAAGAACTTGTGACTTCTTTCCTGCTGCTCCTCTGATGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp CCAGGTCCTAATGTTAGCCTGGAGCGTTCAAAGAGCCTGAACAAAAAGGAAGCATCACGATGGTTGTCCTaGAAGGATCTCTCTCAAGTC +
Preference number: 2 (lower is better)
Translates to: PGPNVSLERSKSLNKKEASRWLS*KDLSQV
Trigger: GACTTGAGAGAGATCCTTCCAGGACAACCATCGTGA...TGCTTCCTTTTTGTTCAGGCTCTTTGAACGCTCCAGGCTAACATTAGGACCTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CAA 90 bp GTGCTGGGGAGAAAGCAGGATATAATTCTGCTGCTCCCCAAGTTCTaGTCAATGACTGGTATCCTAACCACAAAGGCTCCAGACAAGATT +
Preference number: 2 (lower is better)
Translates to: VLGRKQDIILLLPKF*SMTGILTTKAPDKI
Trigger: AATCTTGTCTGGAGCCTTTGTGGTTAGGATACCAGTCATTGACAAGAACTTGGGGAGCAGCAGAATTATATCCTGCTTTCTCCCCAGCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR-3UTR GCA 90 bp CCATCAGAGGAGCAGCAGGAAAGAAGTCACAAGTTCTTGTGGCTTTTGGTCGGCAGACCTGGTATTTTCTaGACACAACTAAGAGCTACA +
Preference number: 2 (lower is better)
Translates to: PSEEQQERSHKFLWLLVGRPGIF*TQLRAT
Trigger: TGTAGCTCTTAGTTGTGTGCAGAAAATACCAGGTCT...GCCGACCAAAAGCCACAAGAACTTGTGACTTCTTTCCTGCTGCTCCTCTGATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp GCGGTACAGAAAGCATACACTAATACTGTGTCACTTGGGACTTTCCGTCTCCTTAATCAAGCAGGATCCTaGAGGAAGCTCAAGTTGCTC +
Preference number: 2 (lower is better)
Translates to: AVQKAYTNTVSLGTFRLLNQAGS*RKLKLL
Trigger: GAGCAACTTGAGCTTCCTCCAGGATCCTGCTTGATT...AAGGAGACGGAAAGTCCCAAGTGACACAGTATTAGTGTATGCTTTCTGTACCGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CAA 90 bp GAAGATTGGGGCTGTCGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTaGGTTCGGTCAGGCACCAAAACAAGAAACTCAATGAGAAATATT +
Preference number: 2 (lower is better)
Translates to: EDWGCRWLVGWLVGW*VRSGTKTRNSMRNI
Trigger: AATATTTCTCATTGAGTTTCTTGTTTTGGTGCCTGACCGAACCAACCAACCAACCAACCAACCAACCAACCAACGACAGCCCCAATCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp CCAGGTCCTAATGTTAGCCTGGAGCGTTCAAAGAGCCTGAACAAAAAGGAAGCACTTCTCTACGTCAAATaGCTCAGAAGGCAAAGTTTG +
Preference number: 2 (lower is better)
Translates to: PGPNVSLERSKSLNKKEALLYVK*LRRQSL
Trigger: CAAACTTTGCCTTCTGAGCCATTTGACGTAGAGAAG...TGCTTCCTTTTTGTTCAGGCTCTTTGAACGCTCCAGGCTAACATTAGGACCTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp CGGTTAGGAGGCCCAACTTGTCAAAGGCACTCATGCGTCTCAGTCAGAAAAGGGTCAATGAGAAATATTTaGTGCGAGTTCAGTAATAGC +
Preference number: 2 (lower is better)
Translates to: RLGGPTCQRHSCVSVRKGSMRNI*CEFSNS
Trigger: GCTATTACTGAACTCGCACCAAATATTTCTCATTGA...CCCTTTTCTGACTGAGACGCATGAGTGCCTTTGACAAGTTGGGCCTCCTAACCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp GCGGTACAGAAAGCATACACTAATACTGTGTCACTTGGGACTTTCCGTCTCCTTCTTCTCTACGTCAAATaGCTCAGAAGGCAAAGTTTG +
Preference number: 2 (lower is better)
Translates to: AVQKAYTNTVSLGTFRLLLLYVK*LRRQSL
Trigger: CAAACTTTGCCTTCTGAGCCATTTGACGTAGAGAAG...AAGGAGACGGAAAGTCCCAAGTGACACAGTATTAGTGTATGCTTTCTGTACCGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp CCATCAGAGGAGCAGCAGGAAAGAAGTCACAAGTTCTTGTGGCTTTTGGTCGGCGCTTGTTTAACTTCGTaGAATTTCTCCTTTTATCTG +
Preference number: 2 (lower is better)
Translates to: PSEEQQERSHKFLWLLVGACLTS*NFSFYL
Trigger: CAGATAAAAGGAGAAATTCCACGAAGTTAAACAAGC...GCCGACCAAAAGCCACAAGAACTTGTGACTTCTTTCCTGCTGCTCCTCTGATGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR TCA 90 bp CCAGGTCCTAATGTTAGCCTGGAGCGTTCAAAGAGCCTGAACAAAAAGGAAGCAATTTCTCCTTTTATCTaGTCAGCATACCATTTCCTG +
Preference number: 2 (lower is better)
Translates to: PGPNVSLERSKSLNKKEAISPFI*SAYHFL
Trigger: CAGGAAATGGTATGCTGATCAGATAAAAGGAGAAAT...TGCTTCCTTTTTGTTCAGGCTCTTTGAACGCTCCAGGCTAACATTAGGACCTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR GCA 90 bp ATCTGGTTAATATTTTTGCATAGGGAGGCAGTGGCTACATTGCCTCTTTGTGGCATGAGAAATATTTGGTaGGAGTTCAGTAATAGCGAC +
Preference number: 2 (lower is better)
Translates to: IWLIFLHREAVATLPLCGMRNIW*EFSNSD
Trigger: GTCGCTATTACTGAACTCGCACCAAATATTTCTCAT...GCCACAAAGAGGCAATGTAGCCACTGCCTCCCTATGCAAAAATATTAACCAGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CCA 90 bp ATCTGGTTAATATTTTTGCATAGGGAGGCAGTGGCTACATTGCCTCTTTGTGGCTACATGGTTTCTACGTaGTCAAGAGGTATATACACA +
Preference number: 2 (lower is better)
Translates to: IWLIFLHREAVATLPLCGYMVST*SRGIYT
Trigger: TGTGTATATACCTCTTGACCACGTAGAAACCATGTA...GCCACAAAGAGGCAATGTAGCCACTGCCTCCCTATGCAAAAATATTAACCAGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR GCA 72 bp CCCCACACAACAGCACAGCGAGCCCGCGAGGAGCTCTaGGGGAGGCAGTGTCTGCCAGGCCTGGCAGTGTGG +
Preference number: 3 (lower is better)
Translates to: PHTTAQRAREEL*GRQCLPGLAVW
Trigger: CCACACTGCCAGGCCTGGCAGACACTGCCTCCCGCAGAGCTCCTCGCGGGCTCGCTGTGCTGTTGTGTGGGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR CCA 72 bp GCCATGGGCCTGAGGACTGAGGAGCCCACTGCAAGGTaGGGAACCCCCTCACTGGCTGGGGTTCTGCCCTCC +
Preference number: 3 (lower is better)
Translates to: AMGLRTEEPTAR*GTPSLAGVLPS
Trigger: GGAGGGCAGAACCCCAGCCAGTGAGGGGGTTCCCCACCTTGCAGTGGGCTCCTCAGTCCTCAGGCCCATGGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CCA 72 bp GCCTGTGCCCAGCTGGATTCGTGGCGTGGCGTTGATTaGTGTCCGAGGTGGACCTGCTGCGCCGTGGCTGCG +
Preference number: 3 (lower is better)
Translates to: ACAQLDSWRGVD*CPRWTCCAVAA
Trigger: CGCAGCCACGGCGCAGCAGGTCCACCTCGGACACCAATCAACGCCACGCCACGAATCCAGCTGGGCACAGGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR TCA 72 bp CTCTGCCTGTGCCCAGCTGGATTCGTGGCGTGGCGTTaGTTGGTGTCCGAGGTGGACCTGCTGCGCCGTGGC +
Preference number: 3 (lower is better)
Translates to: LCLCPAGFVAWR*LVSEVDLLRRG
Trigger: GCCACGGCGCAGCAGGTCCACCTCGGACACCAATCAACGCCACGCCACGAATCCAGCTGGGCACAGGCAGAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR GCA 72 bp AGCGAGCCCGCGAGGAGCTCTGCGGGAGGCAGTGTCTaGCAGGCCTGGCAGTGTGGTAATTGTGCTCCACCG +
Preference number: 3 (lower is better)
Translates to: SEPARSSAGGSV*QAWQCGNCAPP
Trigger: CGGTGGAGCACAATTACCACACTGCCAGGCCTGGCAGACACTGCCTCCCGCAGAGCTCCTCGCGGGCTCGCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR CCA 72 bp CCCCAGCTGCCCTCTGCCTGTGCCCAGCTGGATTCGTaGCGTGGCGTTGATTGGTGTCCGAGGTGGACCTGC +
Preference number: 3 (lower is better)
Translates to: PQLPSACAQLDS*RGVDWCPRWTC
Trigger: GCAGGTCCACCTCGGACACCAATCAACGCCACGCCACGAATCCAGCTGGGCACAGGCAGAGGGCAGCTGGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CCA 72 bp CCTGTCACAGGTGGTGGCGAGGGTGACCGGGGAGACTaGGGTCCTTGGCAGGTGGAGGAACAACGTGCAGCC +
Preference number: 3 (lower is better)
Translates to: PVTGGGEGDRGD*GPWQVEEQRAA
Trigger: GGCTGCACGTTGTTCCTCCACCTGCCAAGGACCCCAGTCTCCCCGGTCACCCTCGCCACCACCTGTGACAGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR GCA 72 bp AAGCCGAACCCGCCCTGCCCTCTCACTCGGCCTGTGTaGCAGGGCCTCGGAAGCAGGTGTATGTATGTGCGC +
Preference number: 3 (lower is better)
Translates to: KPNPPCPLTRPV*QGLGSRCMYVR
Trigger: GCGCACATACATACACCTGCTTCCGAGGCCCTGGCACACAGGCCGAGTGAGAGGGCAGGGCGGGTTCGGCTT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR GCA 72 bp TCCTTGGCAGGTGGAGGAACAACGTGCAGCCCCAGCTaGCCTCTGCCTGTGCCCAGCTGGATTCGTGGCGTG +
Preference number: 3 (lower is better)
Translates to: SLAGGGTTCSPS*PLPVPSWIRGV
Trigger: CACGCCACGAATCCAGCTGGGCACAGGCAGAGGGCAGCTGGGGCTGCACGTTGTTCCTCCACCTGCCAAGGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CCA 72 bp GGAGCCCACTGCAAGGTGGGGAACCCCCTCACTGGCTaGGGTTCTGCCCTCCTCACCTTGCCTGAAAGCCTC +
Preference number: 3 (lower is better)
Translates to: GAHCKVGNPLTG*GSALLTLPESL
Trigger: GAGGCTTTCAGGCAAGGTGAGGAGGGCAGAACCCCAGCCAGTGAGGGGGTTCCCCACCTTGCAGTGGGCTCC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR GCA 72 bp CGGCAGCCCTCCCACCCTCGGCCTGGAAATGGGAGCTaGTCCAGGGCACAAGGACTCCAAGTACGTGGAAAG +
Preference number: 3 (lower is better)
Translates to: RQPSHPRPGNGS*SRAQGLQVRGK
Trigger: CTTTCCACGTACTTGGAGTCCTTGTGCCCTGGAGCAGCTCCCATTTCCAGGCCGAGGGTGGGAGGGCTGCCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CCA 72 bp TTCTCCACCCAATCGGCAGCCCTCCCACCCTCGGCCTaGAAATGGGAGCTGCTCCAGGGCACAAGGACTCCA +
Preference number: 3 (lower is better)
Translates to: FSTQSAALPPSA*KWELLQGTRTP
Trigger: TGGAGTCCTTGTGCCCTGGAGCAGCTCCCATTTCCAGGCCGAGGGTGGGAGGGCTGCCGATTGGGTGGAGAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR GCA 72 bp CTGTGTGCCAGGGCCTCGGAAGCAGGTGTATGTATGTaGGCACAGGAGACCTCTCAGCGGCAAGGCTGGCTG +
Preference number: 3 (lower is better)
Translates to: LCARASEAGVCM*AQETSQRQGWL
Trigger: CAGCCAGCCTTGCCGCTGAGAGGTCTCCTGTGCGCACATACATACACCTGCTTCCGAGGCCCTGGCACACAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CCA 72 bp GCGTTGATTGGTGTCCGAGGTGGACCTGCTGCGCCGTaGCTGCGGTTAGGAGGCCCAACTTGTCAAAGGCAC +
Preference number: 3 (lower is better)
Translates to: ALIGVRGGPAAP*LRLGGPTCQRH
Trigger: GTGCCTTTGACAAGTTGGGCCTCCTAACCGCAGCCACGGCGCAGCAGGTCCACCTCGGACACCAATCAACGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR TCA 72 bp GAACCTAGGAAAGCTACTGGGGCTAAGCCATGGGCCTaGGGACTGAGGAGCCCACTGCAAGGTGGGGAACCC +
Preference number: 3 (lower is better)
Translates to: EPRKATGAKPWA*GLRSPLQGGEP
Trigger: GGGTTCCCCACCTTGCAGTGGGCTCCTCAGTCCTCAGGCCCATGGCTTAGCCCCAGTAGCTTTCCTAGGTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR GCA 72 bp GTGTGGCAACCCCAGCTCTTGGGTTTCTCTCCTCCGTaGCAGAGCTATGCAAACCCATGGGGCTTCCCGTGG +
Preference number: 3 (lower is better)
Translates to: VWQPQLLGFSPP*QSYANPWGFPW
Trigger: CCACGGGAAGCCCCATGGGTTTGCATAGCTCTGGCACGGAGGAGAGAAACCCAAGAGCTGGGGTTGCCACAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR CCA 72 bp GGTTTCTCTCCTCCGTGCCAGAGCTATGCAAACCCATaGGGCTTCCCGTGGAAGGTGGAGCTACCCACCAGG +
Preference number: 3 (lower is better)
Translates to: GFSPPCQSYANP*GFPWKVELPTR
Trigger: CCTGGTGGGTAGCTCCACCTTCCACGGGAAGCCCCATGGGTTTGCATAGCTCTGGCACGGAGGAGAGAAACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR CCA 72 bp CTGAGGGGTCACACGTGGTCTAGCCACACGGGTAGGTaGTGTGGCAACCCCAGCTCTTGGGTTTCTCTCCTC +
Preference number: 3 (lower is better)
Translates to: LRGHTWSSHTGR*CGNPSSWVSLL
Trigger: GAGGAGAGAAACCCAAGAGCTGGGGTTGCCACACCACCTACCCGTGTGGCTAGACCACGTGTGACCCCTCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR TCA 72 bp CCTCACTGGCTGGGGTTCTGCCCTCCTCACCTTGCCTaGAAGCCTCAGAAACCCAGTGAGACCCAGTCTGCT +
Preference number: 3 (lower is better)
Translates to: PHWLGFCPPHLA*KPQKPSETQSA
Trigger: AGCAGACTGGGTCTCACTGGGTTTCTGAGGCTTTCAGGCAAGGTGAGGAGGGCAGAACCCCAGCCAGTGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR GCA 72 bp CCAGCTCTTGGGTTTCTCTCCTCCGTGCCAGAGCTATaGAAACCCATGGGGCTTCCCGTGGAAGGTGGAGCT +
Preference number: 3 (lower is better)
Translates to: PALGFLSSVPEL*KPMGLPVEGGA
Trigger: AGCTCCACCTTCCACGGGAAGCCCCATGGGTTTGCATAGCTCTGGCACGGAGGAGAGAAACCCAAGAGCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR CCA 72 bp CTGGGCCAGCCTTTGTACTGGAGACCGTGTTCTCGATaGCGACCAGAGTTGACTGAGGCCACACTCAGCACG +
Preference number: 3 (lower is better)
Translates to: LGQPLYWRPCSR*RPELTEATLST
Trigger: CGTGCTGAGTGTGGCCTCAGTCAACTCTGGTCGCCATCGAGAACACGGTCTCCAGTACAAAGGCTGGCCCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CCA 72 bp AGCCACACGGGTAGGTGGTGTGGCAACCCCAGCTCTTaGGTTTCTCTCCTCCGTGCCAGAGCTATGCAAACC +
Preference number: 3 (lower is better)
Translates to: SHTGRWCGNPSS*VSLLRARAMQT
Trigger: GGTTTGCATAGCTCTGGCACGGAGGAGAGAAACCCAAGAGCTGGGGTTGCCACACCACCTACCCGTGTGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR CCA 72 bp CAGGCCTGGCAGTGTGGTAATTGTGCTCCACCGGCGTaGTGGGTGACTCCACAGGCCATCTCCAAGAAAAGC +
Preference number: 3 (lower is better)
Translates to: QAWQCGNCAPPA*WVTPQAISKKS
Trigger: GCTTTTCTTGGAGATGGCCTGTGGAGTCACCCACCACGCCGGTGGAGCACAATTACCACACTGCCAGGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR-3UTR CAA 90 bp GCAGGAGATGAAACACAAGGGGGACCTGACAGACGTTGCTACAGCCCCACGCGGGTTAGGAGGCCCAACTaGTCAAAGGCACTCATGCGT +
Preference number: 3 (lower is better)
Translates to: AGDETQGGPDRRCYSPTRVRRPN*SKALMR
Trigger: ACGCATGAGTGCCTTTGACAAGTTGGGCCTCCTAAC...CCGCGTGGGGCTGTAGCAACGTCTGTCAGGTCCCCCTTGTGTTTCATCTCCTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR TCA 72 bp TGTACTGGAGACCGTGTTCTCGATGGCGACCAGAGTTaGCTGAGGCCACACTCAGCACGCCTGACCTTCACC +
Preference number: 3 (lower is better)
Translates to: CTGDRVLDGDQS*LRPHSARLTFT
Trigger: GGTGAAGGTCAGGCGTGCTGAGTGTGGCCTCAGTCAACTCTGGTCGCCATCGAGAACACGGTCTCCAGTACA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR TCA 72 bp CATGTCTCTCTCCTGGATATGGTGGATGTGAGATGCTaGGGCCTGGACCTGCCTCATCGCCGCTCCTTCCTG +
Preference number: 3 (lower is better)
Translates to: HVSLLDMVDVRC*GLDLPHRRSFL
Trigger: CAGGAAGGAGCGGCGATGAGGCAGGTCCAGGCCTCAGCATCTCACATCCACCATATCCAGGAGAGAGACATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR TCA 72 bp GGACTGACTCAGGGGGTCCAGGGACTGACTTACCCTTaGTCAGAGCGGGCCTTCTGGGCCCCACCTAATAAA +
Preference number: 3 (lower is better)
Translates to: GLTQGVQGLTYP*SERAFWAPPNK
Trigger: TTTATTAGGTGGGGCCCAGAAGGCCCGCTCTGATCAAGGGTAAGTCAGTCCCTGGACCCCCTGAGTCAGTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR CCA 72 bp AGGACGCTGAGGCCCAGCAAGCCATTGGGATGGGGTTaGGGATTTCCAGCATCTCCCAGTTTGCCAGTGAAG +
Preference number: 3 (lower is better)
Translates to: RTLRPSKPLGWG*GFPASPSLPVK
Trigger: CTTCACTGGCAAACTGGGAGATGCTGGAAATCCCCAACCCCATCCCAATGGCTTGCTGGGCCTCAGCGTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CCA 72 bp GCCTGGCAGTGTGGTAATTGTGCTCCACCGGCGTGGTaGGTGACTCCACAGGCCATCTCCAAGAAAAGCAAG +
Preference number: 3 (lower is better)
Translates to: AWQCGNCAPPAW*VTPQAISKKSK
Trigger: CTTGCTTTTCTTGGAGATGGCCTGTGGAGTCACCCACCACGCCGGTGGAGCACAATTACCACACTGCCAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR-3UTR CAA 90 bp TACGCGCGCGCAGGAGATGAAACACAAGGGGGACCTGACAGACGTTGCTACAGCGAGGCAGTGGCTACATaGCCTCTTTGTGGCAAGATG +
Preference number: 3 (lower is better)
Translates to: YARAGDETQGGPDRRCYSEAVAT*PLCGKM
Trigger: CATCTTGCCACAAAGAGGCAATGTAGCCACTGCCTC...GCTGTAGCAACGTCTGTCAGGTCCCCCTTGTGTTTCATCTCCTGCGCGCGCGTA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR TCA 72 bp CAAGAGATCACCCTTCTAGACTCCCTCTCTCGGAGCTaGGGACTGACTCAGGGGGTCCAGGGACTGACTTAC +
Preference number: 3 (lower is better)
Translates to: QEITLLDSLSRS*GLTQGVQGLTY
Trigger: GTAAGTCAGTCCCTGGACCCCCTGAGTCAGTCCTCAGCTCCGAGAGAGGGAGTCTAGAAGGGTGATCTCTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR TCA 72 bp CCGTGGAAGGTGGAGCTACCCACCAGGCAAAGGCAGTaGTGTCAAGAGCCGAGAAGGAGGAGGGTTGAGTTA +
Preference number: 3 (lower is better)
Translates to: PWKVELPTRQRQ*CQEPRRRRVEL
Trigger: TAACTCAACCCTCCTCCTTCTCGGCTCTTGACATCACTGCCTTTGCCTGGTGGGTAGCTCCACCTTCCACGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR CCA 72 bp GCTGTAGCTGGAGGCATTGTCCTCCCTGGTTCAGTGTaGAACCTAGGAAAGCTACTGGGGCTAAGCCATGGG +
Preference number: 3 (lower is better)
Translates to: AVAGGIVLPGSV*NLGKLLGLSHG
Trigger: CCCATGGCTTAGCCCCAGTAGCTTTCCTAGGTTCCACACTGAACCAGGGAGGACAATGCCTCCAGCTACAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CCA 72 bp AGAGCTATGCAAACCCATGGGGCTTCCCGTGGAAGGTaGAGCTACCCACCAGGCAAAGGCAGTGATGTCAAG +
Preference number: 3 (lower is better)
Translates to: RAMQTHGASRGR*SYPPGKGSDVK
Trigger: CTTGACATCACTGCCTTTGCCTGGTGGGTAGCTCCACCTTCCACGGGAAGCCCCATGGGTTTGCATAGCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR-3UTR CAA 90 bp GCAGGAGATGAAACACAAGGGGGACCTGACAGACGTTGCTACAGCCCCACGCGGATAAAGATGGGAAGATaGGGGCTGTCGTTGGTTGGT +
Preference number: 3 (lower is better)
Translates to: AGDETQGGPDRRCYSPTRIKMGR*GLSLVG
Trigger: ACCAACCAACGACAGCCCCAATCTTCCCATCTTTAT...CCGCGTGGGGCTGTAGCAACGTCTGTCAGGTCCCCCTTGTGTTTCATCTCCTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CAA 90 bp CCATCAGAGGAGCAGCAGGAAAGAAGTCACAAGTTCTTGTGGCTTTTGGTCGGCCGATGGCGACCAGAGTaGACTGAGGCCACACTCAGC +
Preference number: 3 (lower is better)
Translates to: PSEEQQERSHKFLWLLVGRWRPE*TEATLS
Trigger: GCTGAGTGTGGCCTCAGTCAACTCTGGTCGCCATCG...GCCGACCAAAAGCCACAAGAACTTGTGACTTCTTTCCTGCTGCTCCTCTGATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CAA 90 bp CCATTGGGATGGGGTTGGGGATTTCCAGCATCTCCCAGTTTGCCAGTGAAGAGCTGGTTGGTTGGTTGGTaGGTTCGGTCAGGCACCAAA +
Preference number: 3 (lower is better)
Translates to: PLGWGWGFPASPSLPVKSWLVGW*VRSGTK
Trigger: TTTGGTGCCTGACCGAACCAACCAACCAACCAACCA...GCTCTTCACTGGCAAACTGGGAGATGCTGGAAATCCCCAACCCCATCCCAATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CAA 90 bp CGGTTAGGAGGCCCAACTTGTCAAAGGCACTCATGCGTCTCAGTCAGAAAAGGGTGGTTGGTTGGTTGGTaGGTTGGTTCGGTCAGGCAC +
Preference number: 3 (lower is better)
Translates to: RLGGPTCQRHSCVSVRKGWLVGW*VGSVRH
Trigger: GTGCCTGACCGAACCAACCAACCAACCAACCAACCA...CCCTTTTCTGACTGAGACGCATGAGTGCCTTTGACAAGTTGGGCCTCCTAACCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CAA 90 bp CCATTGGGATGGGGTTGGGGATTTCCAGCATCTCCCAGTTTGCCAGTGAAGAGCGGCAGTCCACAGAGATaGAAGGACACACCAGAAGAC +
Preference number: 3 (lower is better)
Translates to: PLGWGWGFPASPSLPVKSGSPQR*KDTPED
Trigger: GTCTTCTGGTGTGTCCTTCAATCTCTGTGGACTGCC...GCTCTTCACTGGCAAACTGGGAGATGCTGGAAATCCCCAACCCCATCCCAATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR TCA 72 bp CAAGGTTGTGGACTTGCCCTGATGCCCAATGCTAACTaGGAGCACTTTAGCCGAGGCCAAGTCTACACTGCC +
Preference number: 3 (lower is better)
Translates to: QGCGLALMPNAN*EHFSRGQVYTA
Trigger: GGCAGTGTAGACTTGGCCTCGGCTAAAGTGCTCTCAGTTAGCATTGGGCATCAGGGCAAGTCCACAACCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR GCA 72 bp CTGCGGTTAGGAGGCCCAACTTGTCAAAGGCACTCATaGGTCTCAGTCAGAAAAGGGTCTGAGTCCCTTGAG +
Preference number: 3 (lower is better)
Translates to: LRLGGPTCQRHS*VSVRKGSESLE
Trigger: CTCAAGGGACTCAGACCCTTTTCTGACTGAGACGCATGAGTGCCTTTGACAAGTTGGGCCTCCTAACCGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR GCA 72 bp TGCTTGTTCGTTAGGCGTAAAGAGTTTAAGAATGCTTaGACGGAGGCTGGGGGCCTTTGCGGGAGAGGAGCT +
Preference number: 3 (lower is better)
Translates to: CLFVRRKEFKNA*TEAGGLCGRGA
Trigger: AGCTCCTCTCCCGCAAAGGCCCCCAGCCTCCGTGCAAGCATTCTTAAACTCTTTACGCCTAACGAACAAGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CCA 72 bp TCTGAGCCACAGCCATCTTCAGAGGACATCACGGCTTaGACACAGCCATCAGAGGAGCAGCAGGAAAGAAGT +
Preference number: 3 (lower is better)
Translates to: SEPQPSSEDITA*TQPSEEQQERS
Trigger: ACTTCTTTCCTGCTGCTCCTCTGATGGCTGTGTCCAAGCCGTGATGTCCTCTGAAGATGGCTGTGGCTCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CAA 90 bp AGGAGCTCTGCGGGAGGCAGTGTCTGCCAGGCCTGGCAGTGTGGTAATTGTGCTATCTGGTTAATATTTTaGCATAGGGAGGCAGTGGCT +
Preference number: 3 (lower is better)
Translates to: RSSAGGSVCQAWQCGNCAIWLIF*HREAVA
Trigger: AGCCACTGCCTCCCTATGCAAAAATATTAACCAGAT...AGCACAATTACCACACTGCCAGGCCTGGCAGACACTGCCTCCCGCAGAGCTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR-3UTR CAA 90 bp CCATTGGGATGGGGTTGGGGATTTCCAGCATCTCCCAGTTTGCCAGTGAAGAGCAAGAGAGGAGGTGGGTaGAGAAGAGTAAGGGGCAAA +
Preference number: 3 (lower is better)
Translates to: PLGWGWGFPASPSLPVKSKRGGG*RRVRGK
Trigger: TTTGCCCCTTACTCTTCTCAACCCACCTCCTCTCTT...GCTCTTCACTGGCAAACTGGGAGATGCTGGAAATCCCCAACCCCATCCCAATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CAA 90 bp CCAGGTCCTAATGTTAGCCTGGAGCGTTCAAAGAGCCTGAACAAAAAGGAAGCACGATGGCGACCAGAGTaGACTGAGGCCACACTCAGC +
Preference number: 3 (lower is better)
Translates to: PGPNVSLERSKSLNKKEARWRPE*TEATLS
Trigger: GCTGAGTGTGGCCTCAGTCAACTCTGGTCGCCATCG...TGCTTCCTTTTTGTTCAGGCTCTTTGAACGCTCCAGGCTAACATTAGGACCTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CAA 90 bp TACGCGCGCGCAGGAGATGAAACACAAGGGGGACCTGACAGACGTTGCTACAGCAAGTTCTTGTGGCTTTaGGTCGGCAGCTTTCTAACA +
Preference number: 3 (lower is better)
Translates to: YARAGDETQGGPDRRCYSKFLWL*VGSFLT
Trigger: TGTTAGAAAGCTGCCGACCAAAAGCCACAAGAACTT...GCTGTAGCAACGTCTGTCAGGTCCCCCTTGTGTTTCATCTCCTGCGCGCGCGTA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR TCA 72 bp ACTCTGTGGGCCGCTGCTATGAGCAGACCTCTAAGGTaGTTCCTAACTGACTCTCTCTGTTCCCCATGTTCC +
Preference number: 3 (lower is better)
Translates to: TLWAAAMSRPLR*FLTDSLCSPCS
Trigger: GGAACATGGGGAACAGAGAGAGTCAGTTAGGAATCACCTTAGAGGTCTGCTCATAGCAGCGGCCCACAGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR CCA 72 bp AGATGGGAAGATTGGGGCTGTCGTTGGTTGGTTGGTTaGTTGGTTGGTTGGTTGGTTCGGTCAGGCACCAAA +
Preference number: 3 (lower is better)
Translates to: RWEDWGCRWLVG*LVGWLVRSGTK
Trigger: TTTGGTGCCTGACCGAACCAACCAACCAACCAACCAACCAACCAACCAACGACAGCCCCAATCTTCCCATCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CCA 72 bp AAGATTAGGGGTGGGAGAAATCCCCACACCATGGTCTaGGTCTTCTATGCCATCCGCTCCTTCTCTAGGACT +
Preference number: 3 (lower is better)
Translates to: KIRGGRNPHTMV*VFYAIRSFSRT
Trigger: AGTCCTAGAGAAGGAGCGGATGGCATAGAAGACCCAGACCATGGTGTGGGGATTTCTCCCACCCCTAATCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR CCA 72 bp CAGACAAGATTAGGGGTGGGAGAAATCCCCACACCATaGTCTGGGTCTTCTATGCCATCCGCTCCTTCTCTA +
Preference number: 3 (lower is better)
Translates to: QTRLGVGEIPTP*SGSSMPSAPSL
Trigger: TAGAGAAGGAGCGGATGGCATAGAAGACCCAGACCATGGTGTGGGGATTTCTCCCACCCCTAATCTTGTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR-3UTR CAA 90 bp CCATCAGAGGAGCAGCAGGAAAGAAGTCACAAGTTCTTGTGGCTTTTGGTCGGCTGGTTGGTTGGTTGGTaGGTTCGGTCAGGCACCAAA +
Preference number: 3 (lower is better)
Translates to: PSEEQQERSHKFLWLLVGWLVGW*VRSGTK
Trigger: TTTGGTGCCTGACCGAACCAACCAACCAACCAACCA...GCCGACCAAAAGCCACAAGAACTTGTGACTTCTTTCCTGCTGCTCCTCTGATGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CAA 90 bp CGGTTAGGAGGCCCAACTTGTCAAAGGCACTCATGCGTCTCAGTCAGAAAAGGGGGCTACATTGCCTCTTaGTGGCAAGATGAGAGCTCA +
Preference number: 3 (lower is better)
Translates to: RLGGPTCQRHSCVSVRKGGYIAS*WQDESS
Trigger: TGAGCTCTCATCTTGCCACAAAGAGGCAATGTAGCC...CCCTTTTCTGACTGAGACGCATGAGTGCCTTTGACAAGTTGGGCCTCCTAACCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CAA 90 bp CCAGGTCCTAATGTTAGCCTGGAGCGTTCAAAGAGCCTGAACAAAAAGGAAGCACTCAGAAGGCAAAGTTaGGCTGCAAGGGCTATGGCC +
Preference number: 3 (lower is better)
Translates to: PGPNVSLERSKSLNKKEALRRQS*AARAMA
Trigger: GGCCATAGCCCTTGCAGCCAAACTTTGCCTTCTGAG...TGCTTCCTTTTTGTTCAGGCTCTTTGAACGCTCCAGGCTAACATTAGGACCTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CCA 72 bp TGGGGCTGTCGTTGGTTGGTTGGTTGGTTGGTTGGTTaGTTGGTTCGGTCAGGCACCAAAACAAGAAACTCA +
Preference number: 3 (lower is better)
Translates to: WGCRWLVGWLVG*LVRSGTKTRNS
Trigger: TGAGTTTCTTGTTTTGGTGCCTGACCGAACCAACCAACCAACCAACCAACCAACCAACCAACGACAGCCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CCA 72 bp ATAAAGATGGGAAGATTGGGGCTGTCGTTGGTTGGTTaGTTGGTTGGTTGGTTGGTTGGTTCGGTCAGGCAC +
Preference number: 3 (lower is better)
Translates to: IKMGRLGLSLVG*LVGWLVGSVRH
Trigger: GTGCCTGACCGAACCAACCAACCAACCAACCAACCAACCAACCAACGACAGCCCCAATCTTCCCATCTTTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CCA 72 bp GCTCATAAAGATGGGAAGATTGGGGCTGTCGTTGGTTaGTTGGTTGGTTGGTTGGTTGGTTGGTTCGGTCAG +
Preference number: 3 (lower is better)
Translates to: AHKDGKIGAVVG*LVGWLVGWFGQ
Trigger: CTGACCGAACCAACCAACCAACCAACCAACCAACCAACCAACGACAGCCCCAATCTTCCCATCTTTATGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CAA 90 bp GTTTGTTTGTTTCGCAGTTGTCATCGTACCAACGCATGCAAAGCATTCCACTCCCTCAGAAGGCAAAGTTaGGCTGCAAGGGCTATGGCC +
Preference number: 3 (lower is better)
Translates to: VCLFRSCHRTNACKAFHSLRRQS*AARAMA
Trigger: GGCCATAGCCCTTGCAGCCAAACTTTGCCTTCTGAG...GGAGTGGAATGCTTTGCATGCGTTGGTACGATGACAACTGCGAAACAAACAAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR-3UTR CAA 90 bp AAAGAGTTTAAGAATGCTTGCACGGAGGCTGGGGGCCTTTGCGGGAGAGGAGCTATCTGGTTAATATTTTaGCATAGGGAGGCAGTGGCT +
Preference number: 3 (lower is better)
Translates to: KEFKNACTEAGGLCGRGAIWLIF*HREAVA
Trigger: AGCCACTGCCTCCCTATGCAAAAATATTAACCAGAT...AGCTCCTCTCCCGCAAAGGCCCCCAGCCTCCGTGCAAGCATTCTTAAACTCTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR TCA 72 bp CCGAGGCCAAGTCTACACTGCCGATGCTGTGCCGTCTaGTTCATCTGGTTAATATTTTTGCATAGGGAGGCA +
Preference number: 3 (lower is better)
Translates to: PRPSLHCRCCAV*FIWLIFLHREA
Trigger: TGCCTCCCTATGCAAAAATATTAACCAGATGAATCAGACGGCACAGCATCGGCAGTGTAGACTTGGCCTCGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR TCA 72 bp TTCTTGTGGCTTTTGGTCGGCAGCTTTCTAACACCCTaGCTTTCTTTCCTGGGCCAGCCTTTGTACTGGAGA +
Preference number: 3 (lower is better)
Translates to: FLWLLVGSFLTP*LSFLGQPLYWR
Trigger: TCTCCAGTACAAAGGCTGGCCCAGGAAAGAAAGTCAGGGTGTTAGAAAGCTGCCGACCAAAAGCCACAAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR GCA 72 bp GCAAACCCAAGGACATATCTAGCTAGTCTTTGCATCTaGAGGATGTTGTATAGAGAGGACTCTGTGGGCCGC +
Preference number: 3 (lower is better)
Translates to: ANPRTYLASLCI*RMLYREDSVGR
Trigger: GCGGCCCACAGAGTCCTCTCTATACAACATCCTGCAGATGCAAAGACTAGCTAGATATGTCCTTGGGTTTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR CCA 72 bp AGATTGGGGCTGTCGTTGGTTGGTTGGTTGGTTGGTTaGTTGGTTGGTTCGGTCAGGCACCAAAACAAGAAA +
Preference number: 3 (lower is better)
Translates to: RLGLSLVGWLVG*LVGSVRHQNKK
Trigger: TTTCTTGTTTTGGTGCCTGACCGAACCAACCAACCAACCAACCAACCAACCAACCAACGACAGCCCCAATCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CAA 90 bp ATCTGGTTAATATTTTTGCATAGGGAGGCAGTGGCTACATTGCCTCTTTGTGGCTCTGCCCTCCTCACCTaGCCTGAAAGCCTCAGAAAC +
Preference number: 3 (lower is better)
Translates to: IWLIFLHREAVATLPLCGSALLT*PESLRN
Trigger: GTTTCTGAGGCTTTCAGGCAAGGTGAGGAGGGCAGA...GCCACAAAGAGGCAATGTAGCCACTGCCTCCCTATGCAAAAATATTAACCAGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CAA 90 bp GTTTGTTTGTTTCGCAGTTGTCATCGTACCAACGCATGCAAAGCATTCCACTCCGAGGCAGTGGCTACATaGCCTCTTTGTGGCAAGATG +
Preference number: 3 (lower is better)
Translates to: VCLFRSCHRTNACKAFHSEAVAT*PLCGKM
Trigger: CATCTTGCCACAAAGAGGCAATGTAGCCACTGCCTC...GGAGTGGAATGCTTTGCATGCGTTGGTACGATGACAACTGCGAAACAAACAAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR-3UTR CAA 90 bp CCAGGTCCTAATGTTAGCCTGGAGCGTTCAAAGAGCCTGAACAAAAAGGAAGCAAAGAGAGGAGGTGGGTaGAGAAGAGTAAGGGGCAAA +
Preference number: 3 (lower is better)
Translates to: PGPNVSLERSKSLNKKEAKRGGG*RRVRGK
Trigger: TTTGCCCCTTACTCTTCTCAACCCACCTCCTCTCTT...TGCTTCCTTTTTGTTCAGGCTCTTTGAACGCTCCAGGCTAACATTAGGACCTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR-3UTR CAA 90 bp GCGGTACAGAAAGCATACACTAATACTGTGTCACTTGGGACTTTCCGTCTCCTTGGCTACATTGCCTCTTaGTGGCAAGATGAGAGCTCA +
Preference number: 3 (lower is better)
Translates to: AVQKAYTNTVSLGTFRLLGYIAS*WQDESS
Trigger: TGAGCTCTCATCTTGCCACAAAGAGGCAATGTAGCC...AAGGAGACGGAAAGTCCCAAGTGACACAGTATTAGTGTATGCTTTCTGTACCGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR GCA 72 bp GTTTGTTTGTTTCGCAGTTGTCATCGTACCAACGCATaGAAAGCATTCCACTCCCAGAAACGACGCCAAAAT +
Preference number: 3 (lower is better)
Translates to: VCLFRSCHRTNA*KAFHSQKRRQN
Trigger: ATTTTGGCGTCGTTTCTGGGAGTGGAATGCTTTGCATGCGTTGGTACGATGACAACTGCGAAACAAACAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR CCA 72 bp AAGGGGCAAAGGACAGTTAAAGAATGCCAGGAGACCTaGTATTTTCTGCACACAACTAAGAGCTACACTCGA +
Preference number: 3 (lower is better)
Translates to: KGQRTVKECQET*YFLHTTKSYTR
Trigger: TCGAGTGTAGCTCTTAGTTGTGTGCAGAAAATACCAGGTCTCCTGGCATTCTTTAACTGTCCTTTGCCCCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR GCA 72 bp GTTGAGAAGAGTAAGGGGCAAAGGACAGTTAAAGAATaGCAGGAGACCTGGTATTTTCTGCACACAACTAAG +
Preference number: 3 (lower is better)
Translates to: VEKSKGQRTVKE*QETWYFLHTTK
Trigger: CTTAGTTGTGTGCAGAAAATACCAGGTCTCCTGGCATTCTTTAACTGTCCTTTGCCCCTTACTCTTCTCAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR GCA 72 bp CATGTTGCAAACCCAAGGACATATCTAGCTAGTCTTTaGATCTGCAGGATGTTGTATAGAGAGGACTCTGTG +
Preference number: 3 (lower is better)
Translates to: HVANPRTYLASL*ICRMLYREDSV
Trigger: CACAGAGTCCTCTCTATACAACATCCTGCAGATGCAAAGACTAGCTAGATATGTCCTTGGGTTTGCAACATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR CCA 72 bp CACAGAATAGCTAGAGACCCCTACATGGTTTCTACGTaGTCAAGAGGTATATACACAATCCCTCAAAGGTCA +
Preference number: 3 (lower is better)
Translates to: HRIARDPYMVST*SRGIYTIPQRS
Trigger: TGACCTTTGAGGGATTGTGTATATACCTCTTGACCACGTAGAAACCATGTAGGGGTCTCTAGCTATTCTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR GCA 72 bp GGACAGTTAAAGAATGCCAGGAGACCTGGTATTTTCTaGACACAACTAAGAGCTACACTCGAGTTAGAATTT +
Preference number: 3 (lower is better)
Translates to: GQLKNARRPGIF*TQLRATLELEF
Trigger: AAATTCTAACTCGAGTGTAGCTCTTAGTTGTGTGCAGAAAATACCAGGTCTCCTGGCATTCTTTAACTGTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR GCA 72 bp CTTGTCACTAGATCACAGCATACAGAATCAAAGGTTTaGATTTCGTATGGAATGTATCCAAAGAGGCCAGCA +
Preference number: 3 (lower is better)
Translates to: LVTRSQHTESKV*ISYGMYPKRPA
Trigger: TGCTGGCCTCTTTGGATACATTCCATACGAAATGCAAACCTTTGATTCTGTATGCTGTGATCTAGTGACAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR CCA 72 bp AGAGGTGAAGGATGTGTTGATGTTAGGAAGAATCACTaGATGTGTTTTGGGAGAAATTTAGGGAGCATCCAA +
Preference number: 3 (lower is better)
Translates to: RGEGCVDVRKNH*MCFGRNLGSIQ
Trigger: TTGGATGCTCCCTAAATTTCTCCCAAAACACATCCAGTGATTCTTCCTAACATCAACACATCCTTCACCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CCA 72 bp CGACTCCAAAACTTATCCTGGGCTTGTTTAACTTCGTaGAATTTCTCCTTTTATCTGATCAGCATACCATTT +
Preference number: 3 (lower is better)
Translates to: RLQNLSWACLTS*NFSFYLISIPF
Trigger: AAATGGTATGCTGATCAGATAAAAGGAGAAATTCCACGAAGTTAAACAAGCCCAGGATAAGTTTTGGAGTCG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS-3UTR TCA 90 bp TGTCCGAGGTGGACCTGCTGCGCCGTGGCTGCGGTTAGGAGGCCCAACTTGTCAGGGCCATGTGGGCGCTaGGGCCCGGCTGCGACTGCA +
Preference number: 4 (lower is better)
Translates to: CPRWTCCAVAAVRRPNLSGPCGR*GPAATA
Trigger: TGCAGTCGCAGCCGGGCCTCAGCGCCCACATGGCCC...TGACAAGTTGGGCCTCCTAACCGCAGCCACGGCGCAGCAGGTCCACCTCGGACA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR CAA 72 bp CCTCTGCCTGTGCCCAGCTGGATTCGTGGCGTGGCGTaGATTGGTGTCCGAGGTGGACCTGCTGCGCCGTGG +
Preference number: 4 (lower is better)
Translates to: PLPVPSWIRGVA*IGVRGGPAAPW
Trigger: CCACGGCGCAGCAGGTCCACCTCGGACACCAATCAACGCCACGCCACGAATCCAGCTGGGCACAGGCAGAGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS-3UTR GCA 90 bp AGGAGCTCTGCGGGAGGCAGTGTCTGCCAGGCCTGGCAGTGTGGTAATTGTGCTTGCAGCGTGCCACTGTaGTGGTGGGCCGGGGCCATG +
Preference number: 4 (lower is better)
Translates to: RSSAGGSVCQAWQCGNCACSVPL*WWAGAM
Trigger: CATGGCCCCGGCCCACCAGCACAGTGGCACGCTGCA...AGCACAATTACCACACTGCCAGGCCTGGCAGACACTGCCTCCCGCAGAGCTCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS-3UTR GCA 90 bp ACCCTCGGCCTGGAAATGGGAGCTGCTCCAGGGCACAAGGACTCCAAGTACGTGGCGACTGGTGCAGCGTaGCACTGTGCTGGTGGGCCG +
Preference number: 4 (lower is better)
Translates to: TLGLEMGAAPGHKDSKYVATGAA*HCAGGP
Trigger: CGGCCCACCAGCACAGTGGCACGCTGCACCAGTCGC...CACGTACTTGGAGTCCTTGTGCCCTGGAGCAGCTCCCATTTCCAGGCCGAGGGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS-3UTR CCA 90 bp TACGCGCGCGCAGGAGATGAAACACAAGGGGGACCTGACAGACGTTGCTACAGCGTGCCACTGTGCTGGTaGGCCGGGGCCATGTGGGCG +
Preference number: 4 (lower is better)
Translates to: YARAGDETQGGPDRRCYSVPLCW*AGAMWA
Trigger: CGCCCACATGGCCCCGGCCCACCAGCACAGTGGCAC...GCTGTAGCAACGTCTGTCAGGTCCCCCTTGTGTTTCATCTCCTGCGCGCGCGTA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS-3UTR TCA 90 bp CAGCTGCACAGCAAGGCGATGAGGCAGTCACCATTCCTGATGGGTGGGTCTTCCACGAGCCTGCGGTGCTaGGCTTCCAGGAGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: QLHSKAMRQSPFLMGGSSTSLRC*ASRSCC
Trigger: GCAGCAGCTCCTGGAAGCTCAGCACCGCAGGCTCGT...GGAAGACCCACCCATCAGGAATGGTGACTGCCTCATCGCCTTGCTGTGCAGCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS-3UTR TCA 90 bp GCAGGAGATGAAACACAAGGGGGACCTGACAGACGTTGCTACAGCCCCACGCGGGCCAGATACCGGGGCTaGGGTGTCTGCAGTTGGTGG +
Preference number: 4 (lower is better)
Translates to: AGDETQGGPDRRCYSPTRARYRG*GVCSWW
Trigger: CCACCAACTGCAGACACCTCAGCCCCGGTATCTGGC...CCGCGTGGGGCTGTAGCAACGTCTGTCAGGTCCCCCTTGTGTTTCATCTCCTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS-3UTR GCA 90 bp TGTCCGAGGTGGACCTGCTGCGCCGTGGCTGCGGTTAGGAGGCCCAACTTGTCAGCTTCCAGGAGCTGCTaGTGCAGCAGGTATTGCTGG +
Preference number: 4 (lower is better)
Translates to: CPRWTCCAVAAVRRPNLSASRSC*CSRYCW
Trigger: CCAGCAATACCTGCTGCAGCAGCAGCTCCTGGAAGC...TGACAAGTTGGGCCTCCTAACCGCAGCCACGGCGCAGCAGGTCCACCTCGGACA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS-3UTR TCA 90 bp TACGCGCGCGCAGGAGATGAAACACAAGGGGGACCTGACAGACGTTGCTACAGCAGCCGGCGTCCACACTaGGATCCCAGTCAGTGCCCT +
Preference number: 4 (lower is better)
Translates to: YARAGDETQGGPDRRCYSSRRPH*DPSQCP
Trigger: AGGGCACTGACTGGGATCTCAGTGTGGACGCCGGCT...GCTGTAGCAACGTCTGTCAGGTCCCCCTTGTGTTTCATCTCCTGCGCGCGCGTA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS-3UTR CCA 90 bp CCCTACCCCAATAGGCAGTCCACAGAGATTGAAGGACACACCAGAAGACGGGGCAGCGGGGTCAGCGACTaGTGCAGCGTGCCACTGTGC +
Preference number: 4 (lower is better)
Translates to: PYPNRQSTEIEGHTRRRGSGVSD*CSVPLC
Trigger: GCACAGTGGCACGCTGCACCAGTCGCTGACCCCGCT...GCCCCGTCTTCTGGTGTGTCCTTCAATCTCTGTGGACTGCCTATTGGGGTAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS-3UTR CCA 90 bp TACGCGCGCGCAGGAGATGAAACACAAGGGGGACCTGACAGACGTTGCTACAGCGGACCTGTGACGTCCTaGAACTGCAGGGTGGGCAGC +
Preference number: 4 (lower is better)
Translates to: YARAGDETQGGPDRRCYSGPVTS*NCRVGS
Trigger: GCTGCCCACCCTGCAGTTCCAGGACGTCACAGGTCC...GCTGTAGCAACGTCTGTCAGGTCCCCCTTGTGTTTCATCTCCTGCGCGCGCGTA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS-3UTR CCA 90 bp CGGTTAGGAGGCCCAACTTGTCAAAGGCACTCATGCGTCTCAGTCAGAAAAGGGAGCGTGCCACTGTGCTaGTGGGCCGGGGCCATGTGG +
Preference number: 4 (lower is better)
Translates to: RLGGPTCQRHSCVSVRKGSVPLC*WAGAMW
Trigger: CCACATGGCCCCGGCCCACCAGCACAGTGGCACGCT...CCCTTTTCTGACTGAGACGCATGAGTGCCTTTGACAAGTTGGGCCTCCTAACCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS-3UTR CCA 90 bp CCACAGCCATCTTCAGAGGACATCACGGCTTGGACACAGCCATCAGAGGAGCAGGGGATGGGCCGCACCTaGAACTGGGCAGGACTCAAG +
Preference number: 4 (lower is better)
Translates to: PQPSSEDITAWTQPSEEQGMGRT*NWAGLK
Trigger: CTTGAGTCCTGCCCAGTTCCAGGTGCGGCCCATCCC...CTGCTCCTCTGATGGCTGTGTCCAAGCCGTGATGTCCTCTGAAGATGGCTGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS-3UTR GCA 90 bp TGTCCGAGGTGGACCTGCTGCGCCGTGGCTGCGGTTAGGAGGCCCAACTTGTCATTTCTCGGGAAGTGGTaGATTCGAGGAGTTGCCAAG +
Preference number: 4 (lower is better)
Translates to: CPRWTCCAVAAVRRPNLSFLGKW*IRGVAK
Trigger: CTTGGCAACTCCTCGAATGCACCACTTCCCGAGAAA...TGACAAGTTGGGCCTCCTAACCGCAGCCACGGCGCAGCAGGTCCACCTCGGACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS-3UTR GCA 90 bp TGTCCGAGGTGGACCTGCTGCGCCGTGGCTGCGGTTAGGAGGCCCAACTTGTCAAGTTGGTGGAAGAGATaGATACAAGGTAGGCGTCTC +
Preference number: 4 (lower is better)
Translates to: CPRWTCCAVAAVRRPNLSSWWKR*IQGRRL
Trigger: GAGACGCCTACCTTGTATGCATCTCTTCCACCAACT...TGACAAGTTGGGCCTCCTAACCGCAGCCACGGCGCAGCAGGTCCACCTCGGACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS-3UTR CCA 90 bp TACGCGCGCGCAGGAGATGAAACACAAGGGGGACCTGACAGACGTTGCTACAGCGGCATTTCTTGCTCATaGCGAGCCACTGGTCCACAC +
Preference number: 4 (lower is better)
Translates to: YARAGDETQGGPDRRCYSGISCS*RATGPH
Trigger: GTGTGGACCAGTGGCTCGCCATGAGCAAGAAATGCC...GCTGTAGCAACGTCTGTCAGGTCCCCCTTGTGTTTCATCTCCTGCGCGCGCGTA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CAA 72 bp ACCTGCTGCGCCGTGGCTGCGGTTAGGAGGCCCAACTaGTCAAAGGCACTCATGCGTCTCAGTCAGAAAAGG +
Preference number: 4 (lower is better)
Translates to: TCCAVAAVRRPN*SKALMRLSQKR
Trigger: CCTTTTCTGACTGAGACGCATGAGTGCCTTTGACAAGTTGGGCCTCCTAACCGCAGCCACGGCGCAGCAGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS-3UTR GCA 90 bp CCACAGCCATCTTCAGAGGACATCACGGCTTGGACACAGCCATCAGAGGAGCAGCCCCTTCATCTTTCTTaGCCTTGCTGTCCTGGGGTC +
Preference number: 4 (lower is better)
Translates to: PQPSSEDITAWTQPSEEQPLHLS*PCCPGV
Trigger: GACCCCAGGACAGCAAGGGCAAGAAAGATGAAGGGG...CTGCTCCTCTGATGGCTGTGTCCAAGCCGTGATGTCCTCTGAAGATGGCTGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS-3UTR CCA 90 bp TGTCCGAGGTGGACCTGCTGCGCCGTGGCTGCGGTTAGGAGGCCCAACTTGTCACGCTTCTTATACTTGTaGGGGAAGGTGAATCTCTCA +
Preference number: 4 (lower is better)
Translates to: CPRWTCCAVAAVRRPNLSRFLYL*GKVNLS
Trigger: TGAGAGATTCACCTTCCCCCACAAGTATAAGAAGCG...TGACAAGTTGGGCCTCCTAACCGCAGCCACGGCGCAGCAGGTCCACCTCGGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS-3UTR CCA 90 bp CCATTGGGATGGGGTTGGGGATTTCCAGCATCTCCCAGTTTGCCAGTGAAGAGCCTCATGGCGAGCCACTaGTCCACACACAGTTGGTGG +
Preference number: 4 (lower is better)
Translates to: PLGWGWGFPASPSLPVKSLMASH*STHSWW
Trigger: CCACCAACTGTGTGTGGACCAGTGGCTCGCCATGAG...GCTCTTCACTGGCAAACTGGGAGATGCTGGAAATCCCCAACCCCATCCCAATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CAA 72 bp TTGTACTGGAGACCGTGTTCTCGATGGCGACCAGAGTaGACTGAGGCCACACTCAGCACGCCTGACCTTCAC +
Preference number: 4 (lower is better)
Translates to: LYWRPCSRWRPE*TEATLSTPDLH
Trigger: GTGAAGGTCAGGCGTGCTGAGTGTGGCCTCAGTCAACTCTGGTCGCCATCGAGAACACGGTCTCCAGTACAA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS-3UTR TCA 90 bp GCAGGAGATGAAACACAAGGGGGACCTGACAGACGTTGCTACAGCCCCACGCGGACTTGTGGGGGAAGGTaGATCTCTCAATGGTGTTCT +
Preference number: 4 (lower is better)
Translates to: AGDETQGGPDRRCYSPTRTCGGR*ISQWCS
Trigger: AGAACACCATTGAGAGATTCACCTTCCCCCACAAGT...CCGCGTGGGGCTGTAGCAACGTCTGTCAGGTCCCCCTTGTGTTTCATCTCCTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS-3UTR GCA 90 bp CCCTACCCCAATAGGCAGTCCACAGAGATTGAAGGACACACCAGAAGACGGGGCAGATGGGGCATTTCTTaGTCATGGCGAGCCACTGGT +
Preference number: 4 (lower is better)
Translates to: PYPNRQSTEIEGHTRRRGRWGIS*SWRATG
Trigger: ACCAGTGGCTCGCCATGAGCAAGAAATGCCCCATCT...GCCCCGTCTTCTGGTGTGTCCTTCAATCTCTGTGGACTGCCTATTGGGGTAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS-3UTR CCA 90 bp CCACAGCCATCTTCAGAGGACATCACGGCTTGGACACAGCCATCAGAGGAGCAGCACAGAGCCAAACACTaGAAGCACGAGATAGCCGAC +
Preference number: 4 (lower is better)
Translates to: PQPSSEDITAWTQPSEEQHRAKH*KHEIAD
Trigger: GTCGGCTATCTCGTGCTTCCAGTGTTTGGCTCTGTG...CTGCTCCTCTGATGGCTGTGTCCAAGCCGTGATGTCCTCTGAAGATGGCTGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS-3UTR CCA 90 bp ATATTTGGTGCGAGTTCAGTAATAGCGACATGTCCACCACAGATGACGAGAGCAGGCCGCACCTGGAACTaGGCAGGACTCAAGCCGGCG +
Preference number: 4 (lower is better)
Translates to: IFGASSVIATCPPQMTRAGRTWN*AGLKPA
Trigger: CGCCGGCTTGAGTCCTGCCCAGTTCCAGGTGCGGCC...TGCTCTCGTCATCTGTGGTGGACATGTCGCTATTACTGAACTCGCACCAAATAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS-3UTR CCA 90 bp CCCAATAGGCAGTCCACAGAGATTGAAGGACACACCAGAAGACGGGGCCTGGGAGAGTTTCTCGGGAAGTaGTGCATTCGAGGAGTTGCC +
Preference number: 4 (lower is better)
Translates to: PNRQSTEIEGHTRRRGLGEFLGK*CIRGVA
Trigger: GGCAACTCCTCGAATGCACCACTTCCCGAGAAACTC...TCCCAGGCCCCGTCTTCTGGTGTGTCCTTCAATCTCTGTGGACTGCCTATTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS-3UTR CCA 90 bp CCACAGCCATCTTCAGAGGACATCACGGCTTGGACACAGCCATCAGAGGAGCAGTGTCCACTCGGCAGATaGGGCATTTCTTGCTCATGG +
Preference number: 4 (lower is better)
Translates to: PQPSSEDITAWTQPSEEQCPLGR*GISCSW
Trigger: CCATGAGCAAGAAATGCCCCATCTGCCGAGTGGACA...CTGCTCCTCTGATGGCTGTGTCCAAGCCGTGATGTCCTCTGAAGATGGCTGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CAA 72 bp CCTGGGATGAGGCAGGCAGCCATTCCTTCACGATGGTaGTCCTGGAAGGATCTCTCTCAAGTCCAATTGGCC +
Preference number: 4 (lower is better)
Translates to: PGMRQAAIPSRW*SWKDLSQVQLA
Trigger: GGCCAATTGGACTTGAGAGAGATCCTTCCAGGACAACCATCGTGAAGGAATGGCTGCCTGCCTCATCCCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS-3UTR GCA 90 bp GTTTGTTTGTTTCGCAGTTGTCATCGTACCAACGCATGCAAAGCATTCCACTCCGGGGTCAGCGACTGGTaGAGCGTGCCACTGTGCTGG +
Preference number: 4 (lower is better)
Translates to: VCLFRSCHRTNACKAFHSGVSDW*SVPLCW
Trigger: CCAGCACAGTGGCACGCTGCACCAGTCGCTGACCCC...GGAGTGGAATGCTTTGCATGCGTTGGTACGATGACAACTGCGAAACAAACAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS-3UTR GCA 90 bp GTTTGTTTGTTTCGCAGTTGTCATCGTACCAACGCATGCAAAGCATTCCACTCCGTGACGTCCTGGAACTaGAGGGTGGGCAGCGGGGTC +
Preference number: 4 (lower is better)
Translates to: VCLFRSCHRTNACKAFHSVTSWN*RVGSGV
Trigger: GACCCCGCTGCCCACCCTGCAGTTCCAGGACGTCAC...GGAGTGGAATGCTTTGCATGCGTTGGTACGATGACAACTGCGAAACAAACAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS-3UTR CCA 90 bp TGTAGCTGGAGGCATTGTCCTCCCTGGTTCAGTGTGGAACCTAGGAAAGCTACTGGTGTCTGCAGTTGGTaGCCAAAGTCGAAGCTGGGG +
Preference number: 4 (lower is better)
Translates to: CSWRHCPPWFSVEPRKATGVCSW*PKSKLG
Trigger: CCCCAGCTTCGACTTTGGCCACCAACTGCAGACACC...AGTAGCTTTCCTAGGTTCCACACTGAACCAGGGAGGACAATGCCTCCAGCTACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS-3UTR CCA 90 bp CCACAGCCATCTTCAGAGGACATCACGGCTTGGACACAGCCATCAGAGGAGCAGTTGCCCTTGCTGTCCTaGGGTCTTCGCTTCTTATAC +
Preference number: 4 (lower is better)
Translates to: PQPSSEDITAWTQPSEEQLPLLS*GLRFLY
Trigger: GTATAAGAAGCGAAGACCCCAGGACAGCAAGGGCAA...CTGCTCCTCTGATGGCTGTGTCCAAGCCGTGATGTCCTCTGAAGATGGCTGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS-3UTR CCA 90 bp GCAGGAGATGAAACACAAGGGGGACCTGACAGACGTTGCTACAGCCCCACGCGGTCCACACACAGTTGGTaGAAGAGATGCATACAAGGT +
Preference number: 4 (lower is better)
Translates to: AGDETQGGPDRRCYSPTRSTHSW*KRCIQG
Trigger: ACCTTGTATGCATCTCTTCCACCAACTGTGTGTGGA...CCGCGTGGGGCTGTAGCAACGTCTGTCAGGTCCCCCTTGTGTTTCATCTCCTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS-3UTR GCA 90 bp TCTACGTGGTCAAGAGGTATATACACAATCCCTCAAAGGTCAGGATTGAGGGGCGATGCGAGACGAGCCTaGGGTGCTGAGCTTCCAGGA +
Preference number: 4 (lower is better)
Translates to: STWSRGIYTIPQRSGLRGDARRA*GAELPG
Trigger: TCCTGGAAGCTCAGCACCGCAGGCTCGTCTCGCATC...GCCCCTCAATCCTGACCTTTGAGGGATTGTGTATATACCTCTTGACCACGTAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS-3UTR CCA 90 bp CTGCGGTTAGGAGGCCCAACTTGTCAAAGGCACTCATGCGTCTCAGTCAGAAAAGGCATTTCTTGCTCATaGCGAGCCACTGGTCCACAC +
Preference number: 4 (lower is better)
Translates to: LRLGGPTCQRHSCVSVRKGISCS*RATGPH
Trigger: GTGTGGACCAGTGGCTCGCCATGAGCAAGAAATGCC...TTTTCTGACTGAGACGCATGAGTGCCTTTGACAAGTTGGGCCTCCTAACCGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CAA 72 bp AAGATGGGAAGATTGGGGCTGTCGTTGGTTGGTTGGTaGGTTGGTTGGTTGGTTGGTTCGGTCAGGCACCAA +
Preference number: 4 (lower is better)
Translates to: KMGRLGLSLVGW*VGWLVGSVRHQ
Trigger: TTGGTGCCTGACCGAACCAACCAACCAACCAACCAACCAACCAACCAACGACAGCCCCAATCTTCCCATCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS-3UTR CCA 90 bp ATCTGGTTAATATTTTTGCATAGGGAGGCAGTGGCTACATTGCCTCTTTGTGGCGGCCAAAGTCGAAGCTaGGGTGAAGGCGGTGGGGGT +
Preference number: 4 (lower is better)
Translates to: IWLIFLHREAVATLPLCGGQSRS*GEGGGG
Trigger: ACCCCCACCGCCTTCACCCCAGCTTCGACTTTGGCC...GCCACAAAGAGGCAATGTAGCCACTGCCTCCCTATGCAAAAATATTAACCAGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS-3UTR CCA 90 bp TGTAGCTGGAGGCATTGTCCTCCCTGGTTCAGTGTGGAACCTAGGAAAGCTACTGGACAACCATCTGTGTaGACGAGGAGTTTCTCGGGA +
Preference number: 4 (lower is better)
Translates to: CSWRHCPPWFSVEPRKATGQPSV*TRSFSG
Trigger: TCCCGAGAAACTCCTCGTCCACACAGATGGTTGTCC...AGTAGCTTTCCTAGGTTCCACACTGAACCAGGGAGGACAATGCCTCCAGCTACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS-3UTR CCA 90 bp CCACAGCCATCTTCAGAGGACATCACGGCTTGGACACAGCCATCAGAGGAGCAGTCCACACACAGTTGGTaGAAGAGATGCATACAAGGT +
Preference number: 4 (lower is better)
Translates to: PQPSSEDITAWTQPSEEQSTHSW*KRCIQG
Trigger: ACCTTGTATGCATCTCTTCCACCAACTGTGTGTGGA...CTGCTCCTCTGATGGCTGTGTCCAAGCCGTGATGTCCTCTGAAGATGGCTGTGG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS-3UTR CCA 90 bp CCATCAGAGGAGCAGCAGGAAAGAAGTCACAAGTTCTTGTGGCTTTTGGTCGGCTGTCCACTCGGCAGATaGGGCATTTCTTGCTCATGG +
Preference number: 4 (lower is better)
Translates to: PSEEQQERSHKFLWLLVGCPLGR*GISCSW
Trigger: CCATGAGCAAGAAATGCCCCATCTGCCGAGTGGACA...GCCGACCAAAAGCCACAAGAACTTGTGACTTCTTTCCTGCTGCTCCTCTGATGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CAA 72 bp TTGGGGCTGTCGTTGGTTGGTTGGTTGGTTGGTTGGTaGGTTGGTTCGGTCAGGCACCAAAACAAGAAACTC +
Preference number: 4 (lower is better)
Translates to: LGLSLVGWLVGW*VGSVRHQNKKL
Trigger: GAGTTTCTTGTTTTGGTGCCTGACCGAACCAACCAACCAACCAACCAACCAACCAACCAACGACAGCCCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS-3UTR GCA 90 bp TCTACGTGGTCAAGAGGTATATACACAATCCCTCAAAGGTCAGGATTGAGGGGCCATCTTTCTTGCCCTTaGTGTCCTGGGGTCTTCGCT +
Preference number: 4 (lower is better)
Translates to: STWSRGIYTIPQRSGLRGHLSCP*CPGVFA
Trigger: AGCGAAGACCCCAGGACAGCAAGGGCAAGAAAGATG...GCCCCTCAATCCTGACCTTTGAGGGATTGTGTATATACCTCTTGACCACGTAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS-3UTR GCA 90 bp GCGGTACAGAAAGCATACACTAATACTGTGTCACTTGGGACTTTCCGTCTCCTTCCCCTTCATCTTTCTTaGCCTTGCTGTCCTGGGGTC +
Preference number: 4 (lower is better)
Translates to: AVQKAYTNTVSLGTFRLLPLHLS*PCCPGV
Trigger: GACCCCAGGACAGCAAGGGCAAGAAAGATGAAGGGG...AAGGAGACGGAAAGTCCCAAGTGACACAGTATTAGTGTATGCTTTCTGTACCGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS-3UTR CCA 90 bp CATAAAGATGGGAAGATTGGGGCTGTCGTTGGTTGGTTGGTTGGTTGGTTGGTTGGACAACCATCTGTGTaGACGAGGAGTTTCTCGGGA +
Preference number: 4 (lower is better)
Translates to: HKDGKIGAVVGWLVGWLVGQPSV*TRSFSG
Trigger: TCCCGAGAAACTCCTCGTCCACACAGATGGTTGTCC...AACCAACCAACCAACCAACCAACCAACGACAGCCCCAATCTTCCCATCTTTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS-3UTR CCA 90 bp ATCTGGTTAATATTTTTGCATAGGGAGGCAGTGGCTACATTGCCTCTTTGTGGCCTCATGGCGAGCCACTaGTCCACACACAGTTGGTGG +
Preference number: 4 (lower is better)
Translates to: IWLIFLHREAVATLPLCGLMASH*STHSWW
Trigger: CCACCAACTGTGTGTGGACCAGTGGCTCGCCATGAG...GCCACAAAGAGGCAATGTAGCCACTGCCTCCCTATGCAAAAATATTAACCAGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CAA 72 bp GGCTGTCGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTaGGTTCGGTCAGGCACCAAAACAAGAAACTCAATG +
Preference number: 4 (lower is better)
Translates to: GCRWLVGWLVGW*VRSGTKTRNSM
Trigger: CATTGAGTTTCTTGTTTTGGTGCCTGACCGAACCAACCAACCAACCAACCAACCAACCAACCAACGACAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CAA 72 bp AAGATTGGGGCTGTCGTTGGTTGGTTGGTTGGTTGGTaGGTTGGTTGGTTCGGTCAGGCACCAAAACAAGAA +
Preference number: 4 (lower is better)
Translates to: KIGAVVGWLVGW*VGWFGQAPKQE
Trigger: TTCTTGTTTTGGTGCCTGACCGAACCAACCAACCAACCAACCAACCAACCAACCAACGACAGCCCCAATCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS-3UTR GCA 90 bp GCGGTACAGAAAGCATACACTAATACTGTGTCACTTGGGACTTTCCGTCTCCTTCATCTTTCTTGCCCTTaGTGTCCTGGGGTCTTCGCT +
Preference number: 4 (lower is better)
Translates to: AVQKAYTNTVSLGTFRLLHLSCP*CPGVFA
Trigger: AGCGAAGACCCCAGGACAGCAAGGGCAAGAAAGATG...AAGGAGACGGAAAGTCCCAAGTGACACAGTATTAGTGTATGCTTTCTGTACCGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CAA 72 bp TCAAGAGGTATATACACAATCCCTCAAAGGTCAGGATaGAGGGGCCGATCACCAGCTAGTACCCTCGAGATA +
Preference number: 4 (lower is better)
Translates to: SRGIYTIPQRSG*RGRSPASTLEI
Trigger: TATCTCGAGGGTACTAGCTGGTGATCGGCCCCTCAATCCTGACCTTTGAGGGATTGTGTATATACCTCTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CAA 72 bp TTTTCGCTCATAAAGATGGGAAGATTGGGGCTGTCGTaGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTCG +
Preference number: 4 (lower is better)
Translates to: FSLIKMGRLGLS*VGWLVGWLVGS
Trigger: CGAACCAACCAACCAACCAACCAACCAACCAACCAACGACAGCCCCAATCTTCCCATCTTTATGAGCGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS-3UTR GCA 90 bp ATCTGGTTAATATTTTTGCATAGGGAGGCAGTGGCTACATTGCCTCTTTGTGGCAGATGGGGCATTTCTTaGTCATGGCGAGCCACTGGT +
Preference number: 4 (lower is better)
Translates to: IWLIFLHREAVATLPLCGRWGIS*SWRATG
Trigger: ACCAGTGGCTCGCCATGAGCAAGAAATGCCCCATCT...GCCACAAAGAGGCAATGTAGCCACTGCCTCCCTATGCAAAAATATTAACCAGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS-3UTR CCA 90 bp GTTTGTTTGTTTCGCAGTTGTCATCGTACCAACGCATGCAAAGCATTCCACTCCTTGCCCTTGCTGTCCTaGGGTCTTCGCTTCTTATAC +
Preference number: 4 (lower is better)
Translates to: VCLFRSCHRTNACKAFHSLPLLS*GLRFLY
Trigger: GTATAAGAAGCGAAGACCCCAGGACAGCAAGGGCAA...GGAGTGGAATGCTTTGCATGCGTTGGTACGATGACAACTGCGAAACAAACAAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR CAA 72 bp CTGGCTGAGGGCAACTCTACAGAGGTGAAGGATGTGTaGATGTTAGGAAGAATCACTGGATGTGTTTTGGGA +
Preference number: 4 (lower is better)
Translates to: LAEGNSTEVKDV*MLGRITGCVLG
Trigger: TCCCAAAACACATCCAGTGATTCTTCCTAACATCAACACATCCTTCACCTCTGTAGAGTTGCCCTCAGCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS-3UTR GCA 90 bp GTTTGTTTGTTTCGCAGTTGTCATCGTACCAACGCATGCAAAGCATTCCACTCCGTGCATTCGAGGAGTTaGCAAGTAATGCTGATAGTG +
Preference number: 4 (lower is better)
Translates to: VCLFRSCHRTNACKAFHSVHSRS*QVMLIV
Trigger: CACTATCAGCATTACTTGGCAACTCCTCGAATGCAC...GGAGTGGAATGCTTTGCATGCGTTGGTACGATGACAACTGCGAAACAAACAAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR CAA 72 bp GAGCGGTACAGAAAGCATACACTAATACTGTGTCACTaGGGACTTTCCGTCTCCTTTCTCACTAAACCCTCA +
Preference number: 4 (lower is better)
Translates to: ERYRKHTLILCH*GLSVSFLTKPS
Trigger: TGAGGGTTTAGTGAGAAAGGAGACGGAAAGTCCCAAGTGACACAGTATTAGTGTATGCTTTCTGTACCGCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CAA 72 bp TGGTTAATATTTTTGCATAGGGAGGCAGTGGCTACATaGCCTCTTTGTGGCAAGATGAGAGCTCAGGATAGA +
Preference number: 4 (lower is better)
Translates to: WLIFLHREAVAT*PLCGKMRAQDR
Trigger: TCTATCCTGAGCTCTCATCTTGCCACAAAGAGGCAATGTAGCCACTGCCTCCCTATGCAAAAATATTAACCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
3UTR CAA 72 bp AGAAAGCAGGATATAATTCTGCTGCTCCCCAAGTTCTaGTCAATGACTGGTATCCTAACCACAAAGGCTCCA +
Preference number: 4 (lower is better)
Translates to: RKQDIILLLPKF*SMTGILTTKAP
Trigger: TGGAGCCTTTGTGGTTAGGATACCAGTCATTGACAAGAACTTGGGGAGCAGCAGAATTATATCCTGCTTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
3UTR CAA 72 bp ACAGTAGGACAGCTTGCAATCACACACCCTGATAGTTaGGACAAAATAAAGTTCGCAGACTTTTATTTAAAA +
Preference number: 4 (lower is better)
Translates to: TVGQLAITHPDS*DKIKFADFYLK
Trigger: TTTTAAATAAAAGTCTGCGAACTTTATTTTGTCCAAACTATCAGGGTGTGTGATTGCAAGCTGTCCTACTGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS TCA 90 bp GGTGCAGCGTGCCACTGTGCTGGTGGGCCGGGGCCATGTGGGCGCTaGGGCCCGGCTGCGACTGCACGGGGTGGGCCAGCGGGAAGTCCG +
Preference number: 5 (lower is better)
Translates to: GAACHCAGGPGPCGR*GPAATARGGPAGSP
Trigger: CGGACTTCCCGCTGGCCCACCCCGTGCAGTCGCAGCCGGGCCTCAGCGCCCACATGGCCCCGGCCCACCAGCACAGTGGCACGCTGCACC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS CCA 90 bp AGCGACTGGTGCAGCGTGCCACTGTGCTGGTGGGCCGGGGCCATGTaGGCGCTGAGGCCCGGCTGCGACTGCACGGGGTGGGCCAGCGGG +
Preference number: 5 (lower is better)
Translates to: SDWCSVPLCWWAGAM*ALRPGCDCTGWASG
Trigger: CCCGCTGGCCCACCCCGTGCAGTCGCAGCCGGGCCTCAGCGCCCACATGGCCCCGGCCCACCAGCACAGTGGCACGCTGCACCAGTCGCT
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS GCA 90 bp TGCAGGGTGGGCAGCGGGGTCAGCGACTGGTGCAGCGTGCCACTGTaGTGGTGGGCCGGGGCCATGTGGGCGCTGAGGCCCGGCTGCGAC +
Preference number: 5 (lower is better)
Translates to: CRVGSGVSDWCSVPL*WWAGAMWALRPGCD
Trigger: GTCGCAGCCGGGCCTCAGCGCCCACATGGCCCCGGCCCACCAGCACAGTGGCACGCTGCACCAGTCGCTGACCCCGCTGCCCACCCTGCA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS CCA 90 bp GTGGGCAGCGGGGTCAGCGACTGGTGCAGCGTGCCACTGTGCTGGTaGGCCGGGGCCATGTGGGCGCTGAGGCCCGGCTGCGACTGCACG +
Preference number: 5 (lower is better)
Translates to: VGSGVSDWCSVPLCW*AGAMWALRPGCDCT
Trigger: CGTGCAGTCGCAGCCGGGCCTCAGCGCCCACATGGCCCCGGCCCACCAGCACAGTGGCACGCTGCACCAGTCGCTGACCCCGCTGCCCAC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS GCA 90 bp GTGACGTCCTGGAACTGCAGGGTGGGCAGCGGGGTCAGCGACTGGTaGAGCGTGCCACTGTGCTGGTGGGCCGGGGCCATGTGGGCGCTG +
Preference number: 5 (lower is better)
Translates to: VTSWNCRVGSGVSDW*SVPLCWWAGAMWAL
Trigger: CAGCGCCCACATGGCCCCGGCCCACCAGCACAGTGGCACGCTGCACCAGTCGCTGACCCCGCTGCCCACCCTGCAGTTCCAGGACGTCAC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS CCA 90 bp GATACCGGGGCTGAGGTGTCTGCAGTTGGTGGCCAAAGTCGAAGCTaGGGTGAAGGCGGTGGGGGTGGACAGACACTCGATCCTGATTCC +
Preference number: 5 (lower is better)
Translates to: DTGAEVSAVGGQSRS*GEGGGGGQTLDPDS
Trigger: GGAATCAGGATCGAGTGTCTGTCCACCCCCACCGCCTTCACCCCAGCTTCGACTTTGGCCACCAACTGCAGACACCTCAGCCCCGGTATC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS CCA 90 bp GGTGCATTCGAGGAGTTGCCAAGTAATGCTGATAGTGCTGAGGGATaGGCCGCACCTGGAACTGGGCAGGACTCAAGCCGGCGTCCACAC +
Preference number: 5 (lower is better)
Translates to: GAFEELPSNADSAEG*AAPGTGQDSSRRPH
Trigger: GTGTGGACGCCGGCTTGAGTCCTGCCCAGTTCCAGGTGCGGCCCATCCCTCAGCACTATCAGCATTACTTGGCAACTCCTCGAATGCACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS-3UTR CAA 90 bp AAAGAGTTTAAGAATGCTTGCACGGAGGCTGGGGGCCTTTGCGGGAGAGGAGCTCTGCTGCAGCAGGTATaGCTGGTGCAGGGCCTGAGG +
Preference number: 5 (lower is better)
Translates to: KEFKNACTEAGGLCGRGALLQQV*LVQGLR
Trigger: CCTCAGGCCCTGCACCAGCAATACCTGCTGCAGCAG...AGCTCCTCTCCCGCAAAGGCCCCCAGCCTCCGTGCAAGCATTCTTAAACTCTTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS-3UTR CAA 90 bp TACGCGCGCGCAGGAGATGAAACACAAGGGGGACCTGACAGACGTTGCTACAGCCAGATGGGGCATTTCTaGCTCATGGCGAGCCACTGG +
Preference number: 5 (lower is better)
Translates to: YARAGDETQGGPDRRCYSQMGHF*LMASHW
Trigger: CCAGTGGCTCGCCATGAGCAAGAAATGCCCCATCTG...GCTGTAGCAACGTCTGTCAGGTCCCCCTTGTGTTTCATCTCCTGCGCGCGCGTA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS-3UTR CAA 90 bp CAGCTGCACAGCAAGGCGATGAGGCAGTCACCATTCCTGATGGGTGGGTCTTCCTCATCTTTCTTGCCCTaGCTGTCCTGGGGTCTTCGC +
Preference number: 5 (lower is better)
Translates to: QLHSKAMRQSPFLMGGSSSSFLP*LSWGLR
Trigger: GCGAAGACCCCAGGACAGCAAGGGCAAGAAAGATGA...GGAAGACCCACCCATCAGGAATGGTGACTGCCTCATCGCCTTGCTGTGCAGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS-3UTR CAA 90 bp TACGCGCGCGCAGGAGATGAAACACAAGGGGGACCTGACAGACGTTGCTACAGCTCATCTTTCTTGCCCTaGCTGTCCTGGGGTCTTCGC +
Preference number: 5 (lower is better)
Translates to: YARAGDETQGGPDRRCYSSSFLP*LSWGLR
Trigger: GCGAAGACCCCAGGACAGCAAGGGCAAGAAAGATGA...GCTGTAGCAACGTCTGTCAGGTCCCCCTTGTGTTTCATCTCCTGCGCGCGCGTA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS-3UTR CAA 90 bp GCAGGAGATGAAACACAAGGGGGACCTGACAGACGTTGCTACAGCCCCACGCGGCTGGTCCACACACAGTaGGTGGAAGAGATGCATACA +
Preference number: 5 (lower is better)
Translates to: AGDETQGGPDRRCYSPTRLVHTQ*VEEMHT
Trigger: TGTATGCATCTCTTCCACCAACTGTGTGTGGACCAG...CCGCGTGGGGCTGTAGCAACGTCTGTCAGGTCCCCCTTGTGTTTCATCTCCTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS GCA 90 bp CTGTGTGGACGAGGAGTTTCTCGGGAAGTGGTGCATTCGAGGAGTTaGCAAGTAATGCTGATAGTGCTGAGGGATGGGCCGCACCTGGAA +
Preference number: 5 (lower is better)
Translates to: LCGRGVSREVVHSRS*QVMLIVLRDGPHLE
Trigger: TTCCAGGTGCGGCCCATCCCTCAGCACTATCAGCATTACTTGGCAACTCCTCGAATGCACCACTTCCCGAGAAACTCCTCGTCCACACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS-3UTR CAA 90 bp GCAGGAGATGAAACACAAGGGGGACCTGACAGACGTTGCTACAGCCCCACGCGGGGTGCATTCGAGGAGTaGCCAAGTAATGCTGATAGT +
Preference number: 5 (lower is better)
Translates to: AGDETQGGPDRRCYSPTRGAFEE*PSNADS
Trigger: ACTATCAGCATTACTTGGCAACTCCTCGAATGCACC...CCGCGTGGGGCTGTAGCAACGTCTGTCAGGTCCCCCTTGTGTTTCATCTCCTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS CCA 90 bp ATGTCCACTCGGCAGATGGGGCATTTCTTGCTCATGGCGAGCCACTaGTCCACACACAGTTGGTGGAAGAGATGCATACAAGGTAGGCGT +
Preference number: 5 (lower is better)
Translates to: MSTRQMGHFLLMASH*STHSWWKRCIQGRR
Trigger: ACGCCTACCTTGTATGCATCTCTTCCACCAACTGTGTGTGGACCAGTGGCTCGCCATGAGCAAGAAATGCCCCATCTGCCGAGTGGACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS TCA 90 bp CCTTGCTGTCCTGGGGTCTTCGCTTCTTATACTTGTGGGGGAAGGTaGATCTCTCAATGGTGTTCTGTACAGCGCCTCGGGTCACGTTTC +
Preference number: 5 (lower is better)
Translates to: PCCPGVFASYTCGGR*ISQWCSVQRLGSRF
Trigger: GAAACGTGACCCGAGGCGCTGTACAGAACACCATTGAGAGATTCACCTTCCCCCACAAGTATAAGAAGCGAAGACCCCAGGACAGCAAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS CCA 90 bp ATGGGGCATTTCTTGCTCATGGCGAGCCACTGGTCCACACACAGTTaGTGGAAGAGATGCATACAAGGTAGGCGTCTCACATCTTCCCCA +
Preference number: 5 (lower is better)
Translates to: MGHFLLMASHWSTHS*WKRCIQGRRLTSSP
Trigger: TGGGGAAGATGTGAGACGCCTACCTTGTATGCATCTCTTCCACCAACTGTGTGTGGACCAGTGGCTCGCCATGAGCAAGAAATGCCCCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS-3UTR CAA 90 bp CCATCAGAGGAGCAGCAGGAAAGAAGTCACAAGTTCTTGTGGCTTTTGGTCGGCTCCCCTTCATCTTTCTaGCCCTTGCTGTCCTGGGGT +
Preference number: 5 (lower is better)
Translates to: PSEEQQERSHKFLWLLVGSPSSF*PLLSWG
Trigger: ACCCCAGGACAGCAAGGGCAAGAAAGATGAAGGGGA...GCCGACCAAAAGCCACAAGAACTTGTGACTTCTTTCCTGCTGCTCCTCTGATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS GCA 90 bp TTGCTCATGGCGAGCCACTGGTCCACACACAGTTGGTGGAAGAGATaGATACAAGGTAGGCGTCTCACATCTTCCCCATCCTCCAACATA +
Preference number: 5 (lower is better)
Translates to: LLMASHWSTHSWWKR*IQGRRLTSSPSSNI
Trigger: TATGTTGGAGGATGGGGAAGATGTGAGACGCCTACCTTGTATGCATCTCTTCCACCAACTGTGTGTGGACCAGTGGCTCGCCATGAGCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS-3UTR CAA 90 bp CCATTGGGATGGGGTTGGGGATTTCCAGCATCTCCCAGTTTGCCAGTGAAGAGCCTTCGCTTCTTATACTaGTGGGGGAAGGTGAATCTC +
Preference number: 5 (lower is better)
Translates to: PLGWGWGFPASPSLPVKSLRFLY*WGKVNL
Trigger: GAGATTCACCTTCCCCCACAAGTATAAGAAGCGAAG...GCTCTTCACTGGCAAACTGGGAGATGCTGGAAATCCCCAACCCCATCCCAATGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS-3UTR CAA 90 bp CGGTTAGGAGGCCCAACTTGTCAAAGGCACTCATGCGTCTCAGTCAGAAAAGGGCTGGTCCACACACAGTaGGTGGAAGAGATGCATACA +
Preference number: 5 (lower is better)
Translates to: RLGGPTCQRHSCVSVRKGLVHTQ*VEEMHT
Trigger: TGTATGCATCTCTTCCACCAACTGTGTGTGGACCAG...CCCTTTTCTGACTGAGACGCATGAGTGCCTTTGACAAGTTGGGCCTCCTAACCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS-3UTR CAA 90 bp CATAAAGATGGGAAGATTGGGGCTGTCGTTGGTTGGTTGGTTGGTTGGTTGGTTTCCCCTTCATCTTTCTaGCCCTTGCTGTCCTGGGGT +
Preference number: 5 (lower is better)
Translates to: HKDGKIGAVVGWLVGWLVSPSSF*PLLSWG
Trigger: ACCCCAGGACAGCAAGGGCAAGAAAGATGAAGGGGA...AACCAACCAACCAACCAACCAACCAACGACAGCCCCAATCTTCCCATCTTTATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS-3UTR CAA 90 bp TCTACGTGGTCAAGAGGTATATACACAATCCCTCAAAGGTCAGGATTGAGGGGCAGGATGCTGAGACCTTaGAAAGGGGGCACCTCTGTT +
Preference number: 5 (lower is better)
Translates to: STWSRGIYTIPQRSGLRGRMLRP*KGGTSV
Trigger: AACAGAGGTGCCCCCTTTCAAAGGTCTCAGCATCCT...GCCCCTCAATCCTGACCTTTGAGGGATTGTGTATATACCTCTTGACCACGTAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS-3UTR CAA 90 bp ATCTGGTTAATATTTTTGCATAGGGAGGCAGTGGCTACATTGCCTCTTTGTGGCCTGAGGTGTCTGCAGTaGGTGGCCAAAGTCGAAGCT +
Preference number: 5 (lower is better)
Translates to: IWLIFLHREAVATLPLCGLRCLQ*VAKVEA
Trigger: AGCTTCGACTTTGGCCACCAACTGCAGACACCTCAG...GCCACAAAGAGGCAATGTAGCCACTGCCTCCCTATGCAAAAATATTAACCAGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS TCA 72 bp TGCCACTGTGCTGGTGGGCCGGGGCCATGTGGGCGCTaGGGCCCGGCTGCGACTGCACGGGGTGGGCCAGCG +
Preference number: 6 (lower is better)
Translates to: CHCAGGPGPCGR*GPAATARGGPA
Trigger: CGCTGGCCCACCCCGTGCAGTCGCAGCCGGGCCTCAGCGCCCACATGGCCCCGGCCCACCAGCACAGTGGCA
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS CCA 72 bp GGGGTCAGCGACTGGTGCAGCGTGCCACTGTGCTGGTaGGCCGGGGCCATGTGGGCGCTGAGGCCCGGCTGC +
Preference number: 6 (lower is better)
Translates to: GVSDWCSVPLCW*AGAMWALRPGC
Trigger: GCAGCCGGGCCTCAGCGCCCACATGGCCCCGGCCCACCAGCACAGTGGCACGCTGCACCAGTCGCTGACCCC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS GCA 72 bp TGGAACTGCAGGGTGGGCAGCGGGGTCAGCGACTGGTaGAGCGTGCCACTGTGCTGGTGGGCCGGGGCCATG +
Preference number: 6 (lower is better)
Translates to: WNCRVGSGVSDW*SVPLCWWAGAM
Trigger: CATGGCCCCGGCCCACCAGCACAGTGGCACGCTGCACCAGTCGCTGACCCCGCTGCCCACCCTGCAGTTCCA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS CCA 72 bp GCTGAGGTGTCTGCAGTTGGTGGCCAAAGTCGAAGCTaGGGTGAAGGCGGTGGGGGTGGACAGACACTCGAT +
Preference number: 6 (lower is better)
Translates to: AEVSAVGGQSRS*GEGGGGGQTLD
Trigger: ATCGAGTGTCTGTCCACCCCCACCGCCTTCACCCCAGCTTCGACTTTGGCCACCAACTGCAGACACCTCAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS CAA 72 bp GTGGCGGCAGGAGGTAGCGTGAGGATGCTGAGACCTTaGAAAGGGGGCACCTCTGTTTCGCACAGAGCCAAA +
Preference number: 6 (lower is better)
Translates to: VAAGGSVRMLRP*KGGTSVSHRAK
Trigger: TTTGGCTCTGTGCGAAACAGAGGTGCCCCCTTTCAAAGGTCTCAGCATCCTCACGCTACCTCCTGCCGCCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS CCA 72 bp AAAGGGGGCACCTCTGTTTCGCACAGAGCCAAACACTaGAAGCACGAGATAGCCGACGTGGACCAGGACCAT +
Preference number: 6 (lower is better)
Translates to: KGGTSVSHRAKH*KHEIADVDQDH
Trigger: ATGGTCCTGGTCCACGTCGGCTATCTCGTGCTTCCAGTGTTTGGCTCTGTGCGAAACAGAGGTGCCCCCTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS CAA 90 bp TCTGTGTGGACGAGGAGTTTCTCGGGAAGTGGTGCATTCGAGGAGTaGCCAAGTAATGCTGATAGTGCTGAGGGATGGGCCGCACCTGGA +
Preference number: 6 (lower is better)
Translates to: SVWTRSFSGSGAFEE*PSNADSAEGWAAPG
Trigger: TCCAGGTGCGGCCCATCCCTCAGCACTATCAGCATTACTTGGCAACTCCTCGAATGCACCACTTCCCGAGAAACTCCTCGTCCACACAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS GCA 72 bp CGAGGAGTTTCTCGGGAAGTGGTGCATTCGAGGAGTTaGCAAGTAATGCTGATAGTGCTGAGGGATGGGCCG +
Preference number: 6 (lower is better)
Translates to: RGVSREVVHSRS*QVMLIVLRDGP
Trigger: CGGCCCATCCCTCAGCACTATCAGCATTACTTGGCAACTCCTCGAATGCACCACTTCCCGAGAAACTCCTCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS GCA 72 bp GCGAGCCACTGGTCCACACACAGTTGGTGGAAGAGATaGATACAAGGTAGGCGTCTCACATCTTCCCCATCC +
Preference number: 6 (lower is better)
Translates to: ASHWSTHSWWKR*IQGRRLTSSPS
Trigger: GGATGGGGAAGATGTGAGACGCCTACCTTGTATGCATCTCTTCCACCAACTGTGTGTGGACCAGTGGCTCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS TCA 72 bp CCTGGGGTCTTCGCTTCTTATACTTGTGGGGGAAGGTaGATCTCTCAATGGTGTTCTGTACAGCGCCTCGGG +
Preference number: 6 (lower is better)
Translates to: PGVFASYTCGGR*ISQWCSVQRLG
Trigger: CCCGAGGCGCTGTACAGAACACCATTGAGAGATTCACCTTCCCCCACAAGTATAAGAAGCGAAGACCCCAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS CCA 72 bp CGGCAGATGGGGCATTTCTTGCTCATGGCGAGCCACTaGTCCACACACAGTTGGTGGAAGAGATGCATACAA +
Preference number: 6 (lower is better)
Translates to: RQMGHFLLMASH*STHSWWKRCIQ
Trigger: TTGTATGCATCTCTTCCACCAACTGTGTGTGGACCAGTGGCTCGCCATGAGCAAGAAATGCCCCATCTGCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2
CDS CAA 72 bp ACGAGGAGTTTCTCGGGAAGTGGTGCATTCGAGGAGTaGCCAAGTAATGCTGATAGTGCTGAGGGATGGGCC +
Preference number: 6 (lower is better)
Translates to: TRSFSGSGAFEE*PSNADSAEGWA
Trigger: GGCCCATCCCTCAGCACTATCAGCATTACTTGGCAACTCCTCGAATGCACCACTTCCCGAGAAACTCCTCGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026494.14
CDS CCA 72 bp CCCTTGCTGTCCTGGGGTCTTCGCTTCTTATACTTGTaGGGGAAGGTGAATCTCTCAATGGTGTTCTGTACA +
Preference number: 6 (lower is better)
Translates to: PLLSWGLRFLYL*GKVNLSMVFCT
Trigger: TGTACAGAACACCATTGAGAGATTCACCTTCCCCCACAAGTATAAGAAGCGAAGACCCCAGGACAGCAAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026494.14
ENSMUST00000182024.2