RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RNF152 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000047496

Ensembl transcript IDs: ENSMUST00000058688.7, ENSMUST00000172299.2

Found 244 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGGAAAGATCCAGGCACCGGCCAGGAGGCTGGTGTTGTAGACACTTaGCTTATGCACGCCCACAAAGTCTTACTCCCAGGATTCTTCAGG +
Preference number: 1 (lower is better)
Translates to: GKDPGTGQEAGVVDT*LMHAHKVLLPGFFR
Trigger: CCTGAAGAATCCTGGGAGTAAGACTTTGTGGGCGTGCATAAGCCAAGTGTCTACAACACCAGCCTCCTGGCCGGTGCCTGGATCTTTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CCA 90 bp GTTGGAGGTGATGTGGGGGAAAGATCCAGGCACCGGCCAGGAGGCTaGTGTTGTAGACACTTGGCTTATGCACGCCCACAAAGTCTTACT +
Preference number: 1 (lower is better)
Translates to: VGGDVGERSRHRPGG*CCRHLAYARPQSLT
Trigger: AGTAAGACTTTGTGGGCGTGCATAAGCCAAGTGTCTACAACACCAGCCTCCTGGCCGGTGCCTGGATCTTTCCCCCACATCACCTCCAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR TCA 90 bp ACATGGGATCACTATACACAGCAAAGTGCAAGTGGATGTTGGAGGTaGTGTGGGGGAAAGATCCAGGCACCGGCCAGGAGGCTGGTGTTG +
Preference number: 1 (lower is better)
Translates to: TWDHYTQQSASGCWR*CGGKIQAPARRLVL
Trigger: CAACACCAGCCTCCTGGCCGGTGCCTGGATCTTTCCCCCACATCACCTCCAACATCCACTTGCACTTTGCTGTGTATAGTGATCCCATGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR TCA 90 bp CTATCTATTCAGAGCCCAGGGTTTTGTCTGTACCATTCCCTCAGGTaGGGCTCCTTGGCAATGGGATGGCTAAGTCCACCTAGCCAACAG +
Preference number: 1 (lower is better)
Translates to: LSIQSPGFCLYHSLR*GSLAMGWLSPPSQQ
Trigger: CTGTTGGCTAGGTGGACTTAGCCATCCCATTGCCAAGGAGCCTCACCTGAGGGAATGGTACAGACAAAACCCTGGGCTCTGAATAGATAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CCA 90 bp CAGCTGCAACTGCTGTCCCTGCCACTGGCATGTGATTCTAAGCCCTaGCTGCTTGCCCCACATGAGATAGATAAAGTTTTAGTGTTGTGG +
Preference number: 1 (lower is better)
Translates to: QLQLLSLPLACDSKP*LLAPHEIDKVLVLW
Trigger: CCACAACACTAAAACTTTATCTATCTCATGTGGGGCAAGCAGCCAGGGCTTAGAATCACATGCCAGTGGCAGGGACAGCAGTTGCAGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CCA 90 bp AGACCAGCCCCAAAGAGAGTGCTCCCTATTGAAGGGCTGCAGAATTaGAAACTCAGCCCAATTCTGTTCCATCAAAGCAAGCACAGTTGG +
Preference number: 1 (lower is better)
Translates to: RPAPKRVLPIEGLQN*KLSPILFHQSKHSW
Trigger: CCAACTGTGCTTGCTTTGATGGAACAGAATTGGGCTGAGTTTCCAATTCTGCAGCCCTTCAATAGGGAGCACTCTCTTTGGGGCTGGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR GCA 90 bp CACAGCAGGACACGGGTCTTGTCTTCTTGCTATAGAATTACAACCTaGACACTACTGCTCTCTACATACCCCAATGAGCTCATCTGCAAG +
Preference number: 1 (lower is better)
Translates to: HSRTRVLSSCYRITT*TLLLSTYPNELICK
Trigger: CTTGCAGATGAGCTCATTGGGGTATGTAGAGAGCAGTAGTGTGCAGGTTGTAATTCTATAGCAAGAAGACAAGACCCGTGTCCTGCTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR TCA 90 bp TCCACCATTTCAGGGATTCAACAGAACAGCAGGGAGGAACACAGCTaGGTGGAGTCCTTGACAAACATCACTCATTCCACAAACAGAGTT +
Preference number: 1 (lower is better)
Translates to: STISGIQQNSREEHS*VESLTNITHSTNRV
Trigger: AACTCTGTTTGTGGAATGAGTGATGTTTGTCAAGGACTCCACTCAGCTGTGTTCCTCCCTGCTGTTCTGTTGAATCCCTGAAATGGTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR TCA 90 bp TCCAGCCTGGCACCCACATATGCCCACACCAAATACATGACAAACTaGCTGACTTCAAGGGCAAATAGAAACACTGTAAACACCGCAATG +
Preference number: 1 (lower is better)
Translates to: SSLAPTYAHTKYMTN*LTSRANRNTVNTAM
Trigger: CATTGCGGTGTTTACAGTGTTTCTATTTGCCCTTGAAGTCAGTCAGTTTGTCATGTATTTGGTGTGGGCATATGTGGGTGCCAGGCTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR GCA 90 bp TCTCACTCTAAAAGTGGTACCTTGTTCCAGCCTGGCACCCACATATaGCCACACCAAATACATGACAAACTGACTGACTTCAAGGGCAAA +
Preference number: 1 (lower is better)
Translates to: SHSKSGTLFQPGTHI*PHQIHDKLTDFKGK
Trigger: TTTGCCCTTGAAGTCAGTCAGTTTGTCATGTATTTGGTGTGGGCATATGTGGGTGCCAGGCTGGAACAAGGTACCACTTTTAGAGTGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CCA 90 bp TTGGCCACAAGACCCTACACACACTTTCACAGCACAGGTCATGCATaGCTTGCAAGTCAAAAATTTTACAGCTACTGTCTAGCTATGAGC +
Preference number: 1 (lower is better)
Translates to: LATRPYTHFHSTGHA*LASQKFYSYCLAMS
Trigger: GCTCATAGCTAGACAGTAGCTGTAAAATTTTTGACTTGCAAGCCATGCATGACCTGTGCTGTGAAAGTGTGTGTAGGGTCTTGTGGCCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR GCA 90 bp TGTTTTATTTCACTGCAAAGTCATCACTTTAGCACACGTCTGTTGTaGAGCTTGAAGATGAAGGCCAGCAGGCCAATCATGCTTCCATGT +
Preference number: 1 (lower is better)
Translates to: CFISLQSHHFSTRLL*SLKMKASRPIMLPC
Trigger: ACATGGAAGCATGATTGGCCTGCTGGCCTTCATCTTCAAGCTGCACAACAGACGTGTGCTAAAGTGATGACTTTGCAGTGAAATAAAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR GCA 90 bp CACAAGACCCTACACACACTTTCACAGCACAGGTCATGCATGGCTTaGAAGTCAAAAATTTTACAGCTACTGTCTAGCTATGAGCTTTGG +
Preference number: 1 (lower is better)
Translates to: HKTLHTLSQHRSCMA*KSKILQLLSSYELW
Trigger: CCAAAGCTCATAGCTAGACAGTAGCTGTAAAATTTTTGACTTGCAAGCCATGCATGACCTGTGCTGTGAAAGTGTGTGTAGGGTCTTGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR TCA 90 bp TTGGGCTTCCAGCTTAACAAGCACAGAGCAAGCTTAAATCACAGATaGAGAGAAATGAAGGAACTTGGCAAAGCACAACACACTGAAGAC +
Preference number: 1 (lower is better)
Translates to: LGFQLNKHRASLNHR*REMKELGKAQHTED
Trigger: GTCTTCAGTGTGTTGTGCTTTGCCAAGTTCCTTCATTTCTCTTCATCTGTGATTTAAGCTTGCTCTGTGCTTGTTAAGCTGGAAGCCCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR GCA 90 bp GGAAGGGACAGGAGATCTTTAAATCAAAATCTAAGCAGGGAAGGGTaGCAGACTATCGGCTACAGTCTGAGTTTTATACGGAATGTATCT +
Preference number: 1 (lower is better)
Translates to: GRDRRSLNQNLSREG*QTIGYSLSFIRNVS
Trigger: AGATACATTCCGTATAAAACTCAGACTGTAGCCGATAGTCTGGCACCCTTCCCTGCTTAGATTTTGATTTAAAGATCTCCTGTCCCTTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CCA 90 bp AACAGCAGCTTGATATCCCCTATGAAGTCAGTATTTGGCAACATTTaGACAAGAATTTCTACACTGCCCGGCAGCTCATTTATCTGTAGG +
Preference number: 1 (lower is better)
Translates to: NSSLISPMKSVFGNI*TRISTLPGSSFICR
Trigger: CCTACAGATAAATGAGCTGCCGGGCAGTGTAGAAATTCTTGTCCAAATGTTGCCAAATACTGACTTCATAGGGGATATCAAGCTGCTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CCA 90 bp CCGATTAATAAACAGCAGCTTGATATCCCCTATGAAGTCAGTATTTaGCAACATTTGGACAAGAATTTCTACACTGCCCGGCAGCTCATT +
Preference number: 1 (lower is better)
Translates to: PINKQQLDIPYEVSI*QHLDKNFYTARQLI
Trigger: AATGAGCTGCCGGGCAGTGTAGAAATTCTTGTCCAAATGTTGCCAAATACTGACTTCATAGGGGATATCAAGCTGCTGTTTATTAATCGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR TCA 90 bp CCAAAAGTTCTATCAAACAGGACTGACTTAGAAAATTCCAAGAGCTaGACTAGCATACAGCTGAAACTCCAATGGATCCACTCTGTGAGT +
Preference number: 1 (lower is better)
Translates to: PKVLSNRTDLENSKS*TSIQLKLQWIHSVS
Trigger: ACTCACAGAGTGGATCCATTGGAGTTTCAGCTGTATGCTAGTTCAGCTCTTGGAATTTTCTAAGTCAGTCCTGTTTGATAGAACTTTTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR TCA 90 bp TCACAGATGAAGAGAAATGAAGGAACTTGGCAAAGCACAACACACTaGAGACATGTGTGCAAATATTTTCTTCAAACAGCCAAAAGGTCT +
Preference number: 1 (lower is better)
Translates to: SQMKRNEGTWQSTTH*RHVCKYFLQTAKRS
Trigger: AGACCTTTTGGCTGTTTGAAGAAAATATTTGCACACATGTCTTCAGTGTGTTGTGCTTTGCCAAGTTCCTTCATTTCTCTTCATCTGTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CAA 90 bp TTTACTGACATGGGATCACTATACACAGCAAAGTGCAAGTGGATGTaGGAGGTGATGTGGGGGAAAGATCCAGGCACCGGCCAGGAGGCT +
Preference number: 2 (lower is better)
Translates to: FTDMGSLYTAKCKWM*EVMWGKDPGTGQEA
Trigger: AGCCTCCTGGCCGGTGCCTGGATCTTTCCCCCACATCACCTCCAACATCCACTTGCACTTTGCTGTGTATAGTGATCCCATGTCAGTAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CAA 90 bp CTCCTTCTCTGGGCATGTCTGTCTATCTATTCAGAGCCCAGGGTTTaGTCTGTACCATTCCCTCAGGTGAGGCTCCTTGGCAATGGGATG +
Preference number: 2 (lower is better)
Translates to: LLLWACLSIYSEPRV*SVPFPQVRLLGNGM
Trigger: CATCCCATTGCCAAGGAGCCTCACCTGAGGGAATGGTACAGACAAAACCCTGGGCTCTGAATAGATAGACAGACATGCCCAGAGAAGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR GCA 90 bp ACAAGACCCTACACACACTTTCACAGCACAGGTCATGCATGGCTTGCAAGTCAAGAGCCTCCTTTCAGCTaGAACTGCTGTCCCTGCCAC +
Preference number: 2 (lower is better)
Translates to: TRPYTHFHSTGHAWLASQEPPFS*NCCPCH
Trigger: GTGGCAGGGACAGCAGTTGCAGCTGAAAGGAGGCTC...TTGACTTGCAAGCCATGCATGACCTGTGCTGTGAAAGTGTGTGTAGGGTCTTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp GTGGATTTCCCACTCACTGATGCAGTGATTCGGTTGGGAAAGAGCTCAAAAGTGCACCGGCCAGGAGGCTaGTGTTGTAGACACTTGGCT +
Preference number: 2 (lower is better)
Translates to: VDFPLTDAVIRLGKSSKVHRPGG*CCRHLA
Trigger: AGCCAAGTGTCTACAACACCAGCCTCCTGGCCGGTG...CACTTTTGAGCTCTTTCCCAACCGAATCACTGCATCAGTGAGTGGGAAATCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp ACACTGCCCGGCAGCTCATTTATCTGTAGGGCAATTTGGCCCTTTCAAAGAAAACACCGGCCAGGAGGCTaGTGTTGTAGACACTTGGCT +
Preference number: 2 (lower is better)
Translates to: TLPGSSFICRAIWPFQRKHRPGG*CCRHLA
Trigger: AGCCAAGTGTCTACAACACCAGCCTCCTGGCCGGTG...TTTTCTTTGAAAGGGCCAAATTGCCCTACAGATAAATGAGCTGCCGGGCAGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp ACACTGCCCGGCAGCTCATTTATCTGTAGGGCAATTTGGCCCTTTCAAAGAAAAATCGTCCTGGACATGTaGGGGGCAGGATCCTGGTTT +
Preference number: 2 (lower is better)
Translates to: TLPGSSFICRAIWPFQRKIVLDM*GAGSWF
Trigger: AAACCAGGATCCTGCCCCCCACATGTCCAGGACGAT...TTTTCTTTGAAAGGGCCAAATTGCCCTACAGATAAATGAGCTGCCGGGCAGTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp TGGAAACTCAGCCCAATTCTGTTCCATCAAAGCAAGCACAGTTGGCTTCCACTAATCGTCCTGGACATGTaGGGGGCAGGATCCTGGTTT +
Preference number: 2 (lower is better)
Translates to: WKLSPILFHQSKHSWLPLIVLDM*GAGSWF
Trigger: AAACCAGGATCCTGCCCCCCACATGTCCAGGACGAT...TAGTGGAAGCCAACTGTGCTTGCTTTGATGGAACAGAATTGGGCTGAGTTTCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CAA 90 bp TTTGGCCAACAAGTTGAAGACCAGCCCCAAAGAGAGTGCTCCCTATaGAAGGGCTGCAGAATTGGAAACTCAGCCCAATTCTGTTCCATC +
Preference number: 2 (lower is better)
Translates to: FGQQVEDQPQRECSL*KGCRIGNSAQFCSI
Trigger: GATGGAACAGAATTGGGCTGAGTTTCCAATTCTGCAGCCCTTCAATAGGGAGCACTCTCTTTGGGGCTGGTCTTCAACTTGTTGGCCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR TCA 90 bp ACACTGCCCGGCAGCTCATTTATCTGTAGGGCAATTTGGCCCTTTCAAAGAAAATTCCAGGGCTGCTTCTaGCCTTGCTTAGATCCTGTG +
Preference number: 2 (lower is better)
Translates to: TLPGSSFICRAIWPFQRKFQGCF*PCLDPV
Trigger: CACAGGATCTAAGCAAGGTCAGAAGCAGCCCTGGAA...TTTTCTTTGAAAGGGCCAAATTGCCCTACAGATAAATGAGCTGCCGGGCAGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR GCA 90 bp ACTGACATGGGATCACTATACACAGCAAAGTGCAAGTGGATGTTGGAGGTGATGTCCCTGTCCATCACTTaGCTGTTGGGCTTCCAGCTT +
Preference number: 2 (lower is better)
Translates to: TDMGSLYTAKCKWMLEVMSLSIT*LLGFQL
Trigger: AAGCTGGAAGCCCAACAGGCAAGTGATGGACAGGGA...CATCACCTCCAACATCCACTTGCACTTTGCTGTGTATAGTGATCCCATGTCAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp TGGAAACTCAGCCCAATTCTGTTCCATCAAAGCAAGCACAGTTGGCTTCCACTAATGTTGGAGGTGATGTaGGGGAAAGATCCAGGCACC +
Preference number: 2 (lower is better)
Translates to: WKLSPILFHQSKHSWLPLMLEVM*GKDPGT
Trigger: GGTGCCTGGATCTTTCCCCCACATCACCTCCAACAT...TAGTGGAAGCCAACTGTGCTTGCTTTGATGGAACAGAATTGGGCTGAGTTTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CAA 90 bp ATTTCACTGCAAAGTCATCACTTTAGCACACGTCTGTTGTGCAGCTaGAAGATGAAGGCCAGCAGGCCAATCATGCTTCCATGTTCCAGG +
Preference number: 2 (lower is better)
Translates to: ISLQSHHFSTRLLCS*KMKASRPIMLPCSR
Trigger: CCTGGAACATGGAAGCATGATTGGCCTGCTGGCCTTCATCTTCAAGCTGCACAACAGACGTGTGCTAAAGTGATGACTTTGCAGTGAAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR TCA 90 bp ACACTGCCCGGCAGCTCATTTATCTGTAGGGCAATTTGGCCCTTTCAAAGAAAACACTCACTGATGCAGTaGTTCGGTTGGGAAAGAGCT +
Preference number: 2 (lower is better)
Translates to: TLPGSSFICRAIWPFQRKHSLMQ*FGWERA
Trigger: AGCTCTTTCCCAACCGAATCACTGCATCAGTGAGTG...TTTTCTTTGAAAGGGCCAAATTGCCCTACAGATAAATGAGCTGCCGGGCAGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR GCA 90 bp AAGACGACATATGAAGTGCCATACTTGGCTCTACTTAACACGGTAAGCATTCTCCCTTTCAGCTGCAACTaGTGTCCCTGCCACTGGCAT +
Preference number: 2 (lower is better)
Translates to: KTTYEVPYLALLNTVSILPFSCN*CPCHWH
Trigger: ATGCCAGTGGCAGGGACAGCAGTTGCAGCTGAAAGG...GAGAATGCTTACCGTGTTAAGTAGAGCCAAGTATGGCACTTCATATGTCGTCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp CTGGCTAAGACACCATCTATAACAGAGAGAGCAAGCAGGAAGGCTTTTAAGACAATGTTGGAGGTGATGTaGGGGAAAGATCCAGGCACC +
Preference number: 2 (lower is better)
Translates to: LAKTPSITERASRKAFKTMLEVM*GKDPGT
Trigger: GGTGCCTGGATCTTTCCCCCACATCACCTCCAACAT...TGTCTTAAAAGCCTTCCTGCTTGCTCTCTCTGTTATAGATGGTGTCTTAGCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp GTGGATTTCCCACTCACTGATGCAGTGATTCGGTTGGGAAAGAGCTCAAAAGTGACAGCAAAGTGCAAGTaGATGTTGGAGGTGATGTGG +
Preference number: 2 (lower is better)
Translates to: VDFPLTDAVIRLGKSSKVTAKCK*MLEVMW
Trigger: CCACATCACCTCCAACATCCACTTGCACTTTGCTGT...CACTTTTGAGCTCTTTCCCAACCGAATCACTGCATCAGTGAGTGGGAAATCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR TCA 90 bp GTGGATTTCCCACTCACTGATGCAGTGATTCGGTTGGGAAAGAGCTCAAAAGTGAGCAGCCTGAGAGTTTaGGAAATTGATGCTAACCCA +
Preference number: 2 (lower is better)
Translates to: VDFPLTDAVIRLGKSSKVSSLRV*EIDANP
Trigger: TGGGTTAGCATCAATTTCTCAAACTCTCAGGCTGCT...CACTTTTGAGCTCTTTCCCAACCGAATCACTGCATCAGTGAGTGGGAAATCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR GCA 90 bp CTGGCTAAGACACCATCTATAACAGAGAGAGCAAGCAGGAAGGCTTTTAAGACACCTGGCACCCACATATaGCCACACCAAATACATGAC +
Preference number: 2 (lower is better)
Translates to: LAKTPSITERASRKAFKTPGTHI*PHQIHD
Trigger: GTCATGTATTTGGTGTGGGCATATGTGGGTGCCAGG...TGTCTTAAAAGCCTTCCTGCTTGCTCTCTCTGTTATAGATGGTGTCTTAGCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR GCA 90 bp ACACTGCCCGGCAGCTCATTTATCTGTAGGGCAATTTGGCCCTTTCAAAGAAAACCAACTTCCCCAGACTaGTGGCAATTTCCATACCTA +
Preference number: 2 (lower is better)
Translates to: TLPGSSFICRAIWPFQRKPTSPD*WQFPYL
Trigger: TAGGTATGGAAATTGCCAGCAGTCTGGGGAAGTTGG...TTTTCTTTGAAAGGGCCAAATTGCCCTACAGATAAATGAGCTGCCGGGCAGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp ACAAGACCCTACACACACTTTCACAGCACAGGTCATGCATGGCTTGCAAGTCAATTGAAACTGTTCTCCTaGGATCTTGCTGAGACCTCA +
Preference number: 2 (lower is better)
Translates to: TRPYTHFHSTGHAWLASQLKLFS*DLAETS
Trigger: TGAGGTCTCAGCAAGATCCCAGGAGAACAGTTTCAA...TTGACTTGCAAGCCATGCATGACCTGTGCTGTGAAAGTGTGTGTAGGGTCTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp ACTGACATGGGATCACTATACACAGCAAAGTGCAAGTGGATGTTGGAGGTGATGCACAGGAGCCAGCTCTaGGTCTTCACTGTTTTTGTT +
Preference number: 2 (lower is better)
Translates to: TDMGSLYTAKCKWMLEVMHRSQL*VFTVFV
Trigger: AACAAAAACAGTGAAGACCCAGAGCTGGCTCCTGTG...CATCACCTCCAACATCCACTTGCACTTTGCTGTGTATAGTGATCCCATGTCAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR TCA 90 bp GCAGTGAACAGAGAAAAATCAAAAGACATTGGCTGGAACAAGCAAGACAAGAGAAGGGAGGAACACAGCTaGGTGGAGTCCTTGACAAAC +
Preference number: 2 (lower is better)
Translates to: AVNREKSKDIGWNKQDKRREEHS*VESLTN
Trigger: GTTTGTCAAGGACTCCACTCAGCTGTGTTCCTCCCT...TCTCTTGTCTTGCTTGTTCCAGCCAATGTCTTTTGATTTTTCTCTGTTCACTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR TCA 90 bp GATACCATGGGTAAATTCTCTTGGAGATCTCACTCTTGCCTGGAATTTCTGTCACACTCACTGATGCAGTaGTTCGGTTGGGAAAGAGCT +
Preference number: 2 (lower is better)
Translates to: DTMGKFSWRSHSCLEFLSHSLMQ*FGWERA
Trigger: AGCTCTTTCCCAACCGAATCACTGCATCAGTGAGTG...TGACAGAAATTCCAGGCAAGAGTGAGATCTCCAAGAGAATTTACCCATGGTATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR TCA 90 bp ACACTGCCCGGCAGCTCATTTATCTGTAGGGCAATTTGGCCCTTTCAAAGAAAAAGTGACCAGTCCCTTTaGAAAGCTCCTGTTAGAGTA +
Preference number: 2 (lower is better)
Translates to: TLPGSSFICRAIWPFQRKSDQSL*KAPVRV
Trigger: TACTCTAACAGGAGCTTTTCAAAGGGACTGGTCACT...TTTTCTTTGAAAGGGCCAAATTGCCCTACAGATAAATGAGCTGCCGGGCAGTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR GCA 90 bp TTTCATAGCAAAGAGAGGAGCAAGGTACACTTATATGTACTCCATGGCCAACTCAGCACACGTCTGTTGTaGAGCTTGAAGATGAAGGCC +
Preference number: 2 (lower is better)
Translates to: FHSKERSKVHLYVLHGQLSTRLL*SLKMKA
Trigger: GGCCTTCATCTTCAAGCTGCACAACAGACGTGTGCT...GAGTTGGCCATGGAGTACATATAAGTGTACCTTGCTCCTCTCTTTGCTATGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp TGGAAACTCAGCCCAATTCTGTTCCATCAAAGCAAGCACAGTTGGCTTCCACTATTGAAACTGTTCTCCTaGGATCTTGCTGAGACCTCA +
Preference number: 2 (lower is better)
Translates to: WKLSPILFHQSKHSWLPLLKLFS*DLAETS
Trigger: TGAGGTCTCAGCAAGATCCCAGGAGAACAGTTTCAA...TAGTGGAAGCCAACTGTGCTTGCTTTGATGGAACAGAATTGGGCTGAGTTTCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp GATACCATGGGTAAATTCTCTTGGAGATCTCACTCTTGCCTGGAATTTCTGTCACCATCACTTGCCTGTTaGGCTTCCAGCTTAACAAGC +
Preference number: 2 (lower is better)
Translates to: DTMGKFSWRSHSCLEFLSPSLAC*ASSLTS
Trigger: GCTTGTTAAGCTGGAAGCCCAACAGGCAAGTGATGG...TGACAGAAATTCCAGGCAAGAGTGAGATCTCCAAGAGAATTTACCCATGGTATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp TTTCATAGCAAAGAGAGGAGCAAGGTACACTTATATGTACTCCATGGCCAACTCCAAGTATATAGAAGTTaGCAGGCCTCCTTGCCCCCT +
Preference number: 2 (lower is better)
Translates to: FHSKERSKVHLYVLHGQLQVYRS*QASLPP
Trigger: AGGGGGCAAGGAGGCCTGCCAACTTCTATATACTTG...GAGTTGGCCATGGAGTACATATAAGTGTACCTTGCTCCTCTCTTTGCTATGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp AAGACGACATATGAAGTGCCATACTTGGCTCTACTTAACACGGTAAGCATTCTCCAAGTATATAGAAGTTaGCAGGCCTCCTTGCCCCCT +
Preference number: 2 (lower is better)
Translates to: KTTYEVPYLALLNTVSILQVYRS*QASLPP
Trigger: AGGGGGCAAGGAGGCCTGCCAACTTCTATATACTTG...GAGAATGCTTACCGTGTTAAGTAGAGCCAAGTATGGCACTTCATATGTCGTCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CAA 90 bp GCATGCTTGATTGTGGATTTCCCACTCACTGATGCAGTGATTCGGTaGGGAAAGAGCTCAAAAGTGAACTGGGATTTCATCAGACTCTTA +
Preference number: 2 (lower is better)
Translates to: ACLIVDFPLTDAVIR*GKSSKVNWDFIRLL
Trigger: TAAGAGTCTGATGAAATCCCAGTTCACTTTTGAGCTCTTTCCCAACCGAATCACTGCATCAGTGAGTGGGAAATCCACAATCAAGCATGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR TCA 90 bp ACACTGCCCGGCAGCTCATTTATCTGTAGGGCAATTTGGCCCTTTCAAAGAAAATGCATTAGAGCAGCCTaGGAGTTTGAGAAATTGATG +
Preference number: 2 (lower is better)
Translates to: TLPGSSFICRAIWPFQRKCIRAA*EFEKLM
Trigger: CATCAATTTCTCAAACTCTCAGGCTGCTCTAATGCA...TTTTCTTTGAAAGGGCCAAATTGCCCTACAGATAAATGAGCTGCCGGGCAGTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR TCA 90 bp GTGGATTTCCCACTCACTGATGCAGTGATTCGGTTGGGAAAGAGCTCAAAAGTGTACCAGGGAGCAGATTaGTTTTGCTTAATTACAGCT +
Preference number: 2 (lower is better)
Translates to: VDFPLTDAVIRLGKSSKVYQGAD*FCLITA
Trigger: AGCTGTAATTAAGCAAAATCAATCTGCTCCCTGGTA...CACTTTTGAGCTCTTTCCCAACCGAATCACTGCATCAGTGAGTGGGAAATCCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR GCA 90 bp GTGGATTTCCCACTCACTGATGCAGTGATTCGGTTGGGAAAGAGCTCAAAAGTGGACTGTCTATTACAATaGCCATCTAGGTATGCCATT +
Preference number: 2 (lower is better)
Translates to: VDFPLTDAVIRLGKSSKVDCLLQ*PSRYAI
Trigger: AATGGCATACCTAGATGGGCATTGTAATAGACAGTC...CACTTTTGAGCTCTTTCCCAACCGAATCACTGCATCAGTGAGTGGGAAATCCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR GCA 90 bp TTAATAAACAGCAGCTTGATATCCCCTATGAAGTCAGTATTTGGCAACATTTGGCCTTTCAGCTGCAACTaGTGTCCCTGCCACTGGCAT +
Preference number: 2 (lower is better)
Translates to: LINSSLISPMKSVFGNIWPFSCN*CPCHWH
Trigger: ATGCCAGTGGCAGGGACAGCAGTTGCAGCTGAAAGG...CCAAATGTTGCCAAATACTGACTTCATAGGGGATATCAAGCTGCTGTTTATTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR GCA 90 bp GATACCATGGGTAAATTCTCTTGGAGATCTCACTCTTGCCTGGAATTTCTGTCACCCAATGAGCTCATCTaGAAGATGAAGCCACTAGAG +
Preference number: 2 (lower is better)
Translates to: DTMGKFSWRSHSCLEFLSPNELI*KMKPLE
Trigger: CTCTAGTGGCTTCATCTTGCAGATGAGCTCATTGGG...TGACAGAAATTCCAGGCAAGAGTGAGATCTCCAAGAGAATTTACCCATGGTATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR GCA 90 bp ACAAGACCCTACACACACTTTCACAGCACAGGTCATGCATGGCTTGCAAGTCAAAGACGACATATGAAGTaGCATACTTGGCTCTACTTA +
Preference number: 2 (lower is better)
Translates to: TRPYTHFHSTGHAWLASQRRHMK*HTWLYL
Trigger: TAAGTAGAGCCAAGTATGGCACTTCATATGTCGTCT...TTGACTTGCAAGCCATGCATGACCTGTGCTGTGAAAGTGTGTGTAGGGTCTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR GCA 90 bp CTGGCTAAGACACCATCTATAACAGAGAGAGCAAGCAGGAAGGCTTTTAAGACATCACAGCACAGGTCATaGATGGCTTGCAAGTCAAAA +
Preference number: 2 (lower is better)
Translates to: LAKTPSITERASRKAFKTSQHRS*MACKSK
Trigger: TTTTGACTTGCAAGCCATGCATGACCTGTGCTGTGA...TGTCTTAAAAGCCTTCCTGCTTGCTCTCTCTGTTATAGATGGTGTCTTAGCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR GCA 90 bp GCAGTGAACAGAGAAAAATCAAAAGACATTGGCTGGAACAAGCAAGACAAGAGACCTGGCACCCACATATaGCCACACCAAATACATGAC +
Preference number: 2 (lower is better)
Translates to: AVNREKSKDIGWNKQDKRPGTHI*PHQIHD
Trigger: GTCATGTATTTGGTGTGGGCATATGTGGGTGCCAGG...TCTCTTGTCTTGCTTGTTCCAGCCAATGTCTTTTGATTTTTCTCTGTTCACTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR GCA 90 bp TTTCATAGCAAAGAGAGGAGCAAGGTACACTTATATGTACTCCATGGCCAACTCTCCCTATTGAAGGGCTaGAGAATTGGAAACTCAGCC +
Preference number: 2 (lower is better)
Translates to: FHSKERSKVHLYVLHGQLSLLKG*RIGNSA
Trigger: GGCTGAGTTTCCAATTCTGCAGCCCTTCAATAGGGA...GAGTTGGCCATGGAGTACATATAAGTGTACCTTGCTCCTCTCTTTGCTATGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR GCA 90 bp CTGGCTAAGACACCATCTATAACAGAGAGAGCAAGCAGGAAGGCTTTTAAGACACAGGAGGACCCTCAGTaGTTTGTTCTAATAGCTGAT +
Preference number: 2 (lower is better)
Translates to: LAKTPSITERASRKAFKTQEDPQ*FVLIAD
Trigger: ATCAGCTATTAGAACAAAGCACTGAGGGTCCTCCTG...TGTCTTAAAAGCCTTCCTGCTTGCTCTCTCTGTTATAGATGGTGTCTTAGCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp AGATCTTTAAATCAAAATCTAAGCAGGGAAGGGTGCCAGACTATCGGCTACAGTACAGCAAAGTGCAAGTaGATGTTGGAGGTGATGTGG +
Preference number: 2 (lower is better)
Translates to: RSLNQNLSREGCQTIGYSTAKCK*MLEVMW
Trigger: CCACATCACCTCCAACATCCACTTGCACTTTGCTGT...ACTGTAGCCGATAGTCTGGCACCCTTCCCTGCTTAGATTTTGATTTAAAGATCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp GTGGATTTCCCACTCACTGATGCAGTGATTCGGTTGGGAAAGAGCTCAAAAGTGGAGAGAAATAGAAAGTaGGTCAGACATGCATTAGAG +
Preference number: 2 (lower is better)
Translates to: VDFPLTDAVIRLGKSSKVERNRK*VRHALE
Trigger: CTCTAATGCATGTCTGACCCACTTTCTATTTCTCTC...CACTTTTGAGCTCTTTCCCAACCGAATCACTGCATCAGTGAGTGGGAAATCCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp GATACCATGGGTAAATTCTCTTGGAGATCTCACTCTTGCCTGGAATTTCTGTCAGAAGGGCTGCAGAATTaGAAACTCAGCCCAATTCTG +
Preference number: 2 (lower is better)
Translates to: DTMGKFSWRSHSCLEFLSEGLQN*KLSPIL
Trigger: CAGAATTGGGCTGAGTTTCCAATTCTGCAGCCCTTC...TGACAGAAATTCCAGGCAAGAGTGAGATCTCCAAGAGAATTTACCCATGGTATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp TTTCATAGCAAAGAGAGGAGCAAGGTACACTTATATGTACTCCATGGCCAACTCGAAGGGCTGCAGAATTaGAAACTCAGCCCAATTCTG +
Preference number: 2 (lower is better)
Translates to: FHSKERSKVHLYVLHGQLEGLQN*KLSPIL
Trigger: CAGAATTGGGCTGAGTTTCCAATTCTGCAGCCCTTC...GAGTTGGCCATGGAGTACATATAAGTGTACCTTGCTCCTCTCTTTGCTATGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp CTGGCTAAGACACCATCTATAACAGAGAGAGCAAGCAGGAAGGCTTTTAAGACATGGAAGGGAACATGGTaGTGGTTACATATGTCCTCT +
Preference number: 2 (lower is better)
Translates to: LAKTPSITERASRKAFKTWKGTW*WLHMSS
Trigger: AGAGGACATATGTAACCACCACCATGTTCCCTTCCA...TGTCTTAAAAGCCTTCCTGCTTGCTCTCTCTGTTATAGATGGTGTCTTAGCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp CTGGCTAAGACACCATCTATAACAGAGAGAGCAAGCAGGAAGGCTTTTAAGACACAGAAAGCCCACACATaGGTCTTTAAGAATGGAAGG +
Preference number: 2 (lower is better)
Translates to: LAKTPSITERASRKAFKTQKAHT*VFKNGR
Trigger: CCTTCCATTCTTAAAGACCCATGTGTGGGCTTTCTG...TGTCTTAAAAGCCTTCCTGCTTGCTCTCTCTGTTATAGATGGTGTCTTAGCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CAA 90 bp GGAATTAGACATTGCCTATATATTTCCCTGTCCATCACTTGCCTGTaGGGCTTCCAGCTTAACAAGCACAGAGCAAGCTTAAATCACAGA +
Preference number: 2 (lower is better)
Translates to: GIRHCLYISLSITCL*GFQLNKHRASLNHR
Trigger: TCTGTGATTTAAGCTTGCTCTGTGCTTGTTAAGCTGGAAGCCCAACAGGCAAGTGATGGACAGGGAAATATATAGGCAATGTCTAATTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR TCA 90 bp TTAATAAACAGCAGCTTGATATCCCCTATGAAGTCAGTATTTGGCAACATTTGGTTCCAGGGCTGCTTCTaGCCTTGCTTAGATCCTGTG +
Preference number: 2 (lower is better)
Translates to: LINSSLISPMKSVFGNIWFQGCF*PCLDPV
Trigger: CACAGGATCTAAGCAAGGTCAGAAGCAGCCCTGGAA...CCAAATGTTGCCAAATACTGACTTCATAGGGGATATCAAGCTGCTGTTTATTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR TCA 90 bp TTTCATAGCAAAGAGAGGAGCAAGGTACACTTATATGTACTCCATGGCCAACTCAATGGATCCACTCTGTaGGTAATGCAGAGGGTGAAA +
Preference number: 2 (lower is better)
Translates to: FHSKERSKVHLYVLHGQLNGSTL*VMQRVK
Trigger: TTTCACCCTCTGCATTACTCACAGAGTGGATCCATT...GAGTTGGCCATGGAGTACATATAAGTGTACCTTGCTCCTCTCTTTGCTATGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR TCA 90 bp TGGAAACTCAGCCCAATTCTGTTCCATCAAAGCAAGCACAGTTGGCTTCCACTAGAAAATTCCAAGAGCTaGACTAGCATACAGCTGAAA +
Preference number: 2 (lower is better)
Translates to: WKLSPILFHQSKHSWLPLENSKS*TSIQLK
Trigger: TTTCAGCTGTATGCTAGTTCAGCTCTTGGAATTTTC...TAGTGGAAGCCAACTGTGCTTGCTTTGATGGAACAGAATTGGGCTGAGTTTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR TCA 90 bp GTGGATTTCCCACTCACTGATGCAGTGATTCGGTTGGGAAAGAGCTCAAAAGTGTCTATCAAACAGGACTaGCTTAGAAAATTCCAAGAG +
Preference number: 2 (lower is better)
Translates to: VDFPLTDAVIRLGKSSKVSIKQD*LRKFQE
Trigger: CTCTTGGAATTTTCTAAGTCAGTCCTGTTTGATAGA...CACTTTTGAGCTCTTTCCCAACCGAATCACTGCATCAGTGAGTGGGAAATCCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR GCA 90 bp TTAATAAACAGCAGCTTGATATCCCCTATGAAGTCAGTATTTGGCAACATTTGGTCCCTGTCCATCACTTaGCTGTTGGGCTTCCAGCTT +
Preference number: 2 (lower is better)
Translates to: LINSSLISPMKSVFGNIWSLSIT*LLGFQL
Trigger: AAGCTGGAAGCCCAACAGGCAAGTGATGGACAGGGA...CCAAATGTTGCCAAATACTGACTTCATAGGGGATATCAAGCTGCTGTTTATTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR GCA 90 bp GCAGTGAACAGAGAAAAATCAAAAGACATTGGCTGGAACAAGCAAGACAAGAGACCCAATGAGCTCATCTaGAAGATGAAGCCACTAGAG +
Preference number: 2 (lower is better)
Translates to: AVNREKSKDIGWNKQDKRPNELI*KMKPLE
Trigger: CTCTAGTGGCTTCATCTTGCAGATGAGCTCATTGGG...TCTCTTGTCTTGCTTGTTCCAGCCAATGTCTTTTGATTTTTCTCTGTTCACTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR GCA 90 bp ACACTGCCCGGCAGCTCATTTATCTGTAGGGCAATTTGGCCCTTTCAAAGAAAAAATTCTGAAATCAAATaGCCTGCCTGCTCAGTGTAT +
Preference number: 2 (lower is better)
Translates to: TLPGSSFICRAIWPFQRKNSEIK*PACSVY
Trigger: ATACACTGAGCAGGCAGGGCATTTGATTTCAGAATT...TTTTCTTTGAAAGGGCCAAATTGCCCTACAGATAAATGAGCTGCCGGGCAGTGT
43% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR GCA 90 bp TTAATAAACAGCAGCTTGATATCCCCTATGAAGTCAGTATTTGGCAACATTTGGCACTACAGTGTGGGATaGACAAGTGGGGATACCCCA +
Preference number: 2 (lower is better)
Translates to: LINSSLISPMKSVFGNIWHYSVG*TSGDTP
Trigger: TGGGGTATCCCCACTTGTGCATCCCACACTGTAGTG...CCAAATGTTGCCAAATACTGACTTCATAGGGGATATCAAGCTGCTGTTTATTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp GCAGTGAACAGAGAAAAATCAAAAGACATTGGCTGGAACAAGCAAGACAAGAGACACAGGAGCCAGCTCTaGGTCTTCACTGTTTTTGTT +
Preference number: 2 (lower is better)
Translates to: AVNREKSKDIGWNKQDKRHRSQL*VFTVFV
Trigger: AACAAAAACAGTGAAGACCCAGAGCTGGCTCCTGTG...TCTCTTGTCTTGCTTGTTCCAGCCAATGTCTTTTGATTTTTCTCTGTTCACTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp GTGGATTTCCCACTCACTGATGCAGTGATTCGGTTGGGAAAGAGCTCAAAAGTGTCTTATCTTGTGAGATaGCTTGAGAAAGATTGGCAT +
Preference number: 2 (lower is better)
Translates to: VDFPLTDAVIRLGKSSKVSYLVR*LEKDWH
Trigger: ATGCCAATCTTTCTCAAGCCATCTCACAAGATAAGA...CACTTTTGAGCTCTTTCCCAACCGAATCACTGCATCAGTGAGTGGGAAATCCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp ACACTGCCCGGCAGCTCATTTATCTGTAGGGCAATTTGGCCCTTTCAAAGAAAAAAGGGAACATGGTGGTaGTTACATATGTCCTCTATT +
Preference number: 2 (lower is better)
Translates to: TLPGSSFICRAIWPFQRKKGTWW*LHMSSI
Trigger: AATAGAGGACATATGTAACCACCACCATGTTCCCTT...TTTTCTTTGAAAGGGCCAAATTGCCCTACAGATAAATGAGCTGCCGGGCAGTGT
43% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR TCA 90 bp AGATCTTTAAATCAAAATCTAAGCAGGGAAGGGTGCCAGACTATCGGCTACAGTGGTTCACTTACATGGTaGGCATTTTTGTTCACCGTA +
Preference number: 2 (lower is better)
Translates to: RSLNQNLSREGCQTIGYSGSLTW*AFLFTV
Trigger: TACGGTGAACAAAAATGCTCACCATGTAAGTGAACC...ACTGTAGCCGATAGTCTGGCACCCTTCCCTGCTTAGATTTTGATTTAAAGATCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR TCA 90 bp TGGAAACTCAGCCCAATTCTGTTCCATCAAAGCAAGCACAGTTGGCTTCCACTAATAGTTGAGCAATCATaGGAAACTGGTTCACTTACA +
Preference number: 2 (lower is better)
Translates to: WKLSPILFHQSKHSWLPLIVEQS*ETGSLT
Trigger: TGTAAGTGAACCAGTTTCTCATGATTGCTCAACTAT...TAGTGGAAGCCAACTGTGCTTGCTTTGATGGAACAGAATTGGGCTGAGTTTCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR TCA 90 bp AGATCTTTAAATCAAAATCTAAGCAGGGAAGGGTGCCAGACTATCGGCTACAGTTGCATTAGAGCAGCCTaGGAGTTTGAGAAATTGATG +
Preference number: 2 (lower is better)
Translates to: RSLNQNLSREGCQTIGYSCIRAA*EFEKLM
Trigger: CATCAATTTCTCAAACTCTCAGGCTGCTCTAATGCA...ACTGTAGCCGATAGTCTGGCACCCTTCCCTGCTTAGATTTTGATTTAAAGATCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR TCA 90 bp AGATCTTTAAATCAAAATCTAAGCAGGGAAGGGTGCCAGACTATCGGCTACAGTCCAAAGGGCAATGGATaGGATTTTATTACTACCCCT +
Preference number: 2 (lower is better)
Translates to: RSLNQNLSREGCQTIGYSPKGNG*DFITTP
Trigger: AGGGGTAGTAATAAAATCTCATCCATTGCCCTTTGG...ACTGTAGCCGATAGTCTGGCACCCTTCCCTGCTTAGATTTTGATTTAAAGATCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR TCA 90 bp CTGGCTAAGACACCATCTATAACAGAGAGAGCAAGCAGGAAGGCTTTTAAGACAGGTTATTTAGAATTCTaGAATCAAATGCCCTGCCTG +
Preference number: 2 (lower is better)
Translates to: LAKTPSITERASRKAFKTGYLEF*NQMPCL
Trigger: CAGGCAGGGCATTTGATTTCAGAATTCTAAATAACC...TGTCTTAAAAGCCTTCCTGCTTGCTCTCTCTGTTATAGATGGTGTCTTAGCCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR GCA 90 bp GTGGATTTCCCACTCACTGATGCAGTGATTCGGTTGGGAAAGAGCTCAAAAGTGTATTTAGAGAGCTATTaGACCCACATGTACATTTTC +
Preference number: 2 (lower is better)
Translates to: VDFPLTDAVIRLGKSSKVYLESY*THMYIF
Trigger: GAAAATGTACATGTGGGTGCAATAGCTCTCTAAATA...CACTTTTGAGCTCTTTCCCAACCGAATCACTGCATCAGTGAGTGGGAAATCCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR GCA 90 bp TTAATAAACAGCAGCTTGATATCCCCTATGAAGTCAGTATTTGGCAACATTTGGAGCACACGTCTGTTGTaGAGCTTGAAGATGAAGGCC +
Preference number: 2 (lower is better)
Translates to: LINSSLISPMKSVFGNIWSTRLL*SLKMKA
Trigger: GGCCTTCATCTTCAAGCTGCACAACAGACGTGTGCT...CCAAATGTTGCCAAATACTGACTTCATAGGGGATATCAAGCTGCTGTTTATTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR GCA 90 bp GATACCATGGGTAAATTCTCTTGGAGATCTCACTCTTGCCTGGAATTTCTGTCAAAACACCGCAATGCATaGTTGATTGTGGATTTCCCA +
Preference number: 2 (lower is better)
Translates to: DTMGKFSWRSHSCLEFLSKHRNA*LIVDFP
Trigger: TGGGAAATCCACAATCAAGCATGCATTGCGGTGTTT...TGACAGAAATTCCAGGCAAGAGTGAGATCTCCAAGAGAATTTACCCATGGTATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR GCA 90 bp CTGGCTAAGACACCATCTATAACAGAGAGAGCAAGCAGGAAGGCTTTTAAGACAGCAAGACAAGAGAAGTaGTCAGAGAAATTGATTCAG +
Preference number: 2 (lower is better)
Translates to: LAKTPSITERASRKAFKTARQEK*SEKLIQ
Trigger: CTGAATCAATTTCTCTGAGCACTTCTCTTGTCTTGC...TGTCTTAAAAGCCTTCCTGCTTGCTCTCTCTGTTATAGATGGTGTCTTAGCCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp ACTGACATGGGATCACTATACACAGCAAAGTGCAAGTGGATGTTGGAGGTGATGTCTTATCTTGTGAGATaGCTTGAGAAAGATTGGCAT +
Preference number: 2 (lower is better)
Translates to: TDMGSLYTAKCKWMLEVMSYLVR*LEKDWH
Trigger: ATGCCAATCTTTCTCAAGCCATCTCACAAGATAAGA...CATCACCTCCAACATCCACTTGCACTTTGCTGTGTATAGTGATCCCATGTCAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp AGATCTTTAAATCAAAATCTAAGCAGGGAAGGGTGCCAGACTATCGGCTACAGTCAGCTGAAACTCCAATaGATCCACTCTGTGAGTAAT +
Preference number: 2 (lower is better)
Translates to: RSLNQNLSREGCQTIGYSQLKLQ*IHSVSN
Trigger: ATTACTCACAGAGTGGATCCATTGGAGTTTCAGCTG...ACTGTAGCCGATAGTCTGGCACCCTTCCCTGCTTAGATTTTGATTTAAAGATCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp CAGAAAAGGGGCTTAATAAAGTTCTCTTTAAGCTTCACTGCTCATTCCTTGGTTTGCTTAACAGCCATGTaGCTAGTGGCCACTCTACTA +
Preference number: 2 (lower is better)
Translates to: QKRGLIKFSLSFTAHSLVCLTAM*LVATLL
Trigger: TAGTAGAGTGGCCACTAGCCACATGGCTGTTAAGCA...AACCAAGGAATGAGCAGTGAAGCTTAAAGAGAACTTTATTAAGCCCCTTTTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CAA 90 bp AGATCATCAAGGACTGTCTATTACAATGCCCATCTAGGTATGCCATaGATTAGCAACATTTGTGACTTTGACACAAAGCCCTCCAAACTG +
Preference number: 2 (lower is better)
Translates to: RSSRTVYYNAHLGMP*ISNICDFDTKPSKL
Trigger: CAGTTTGGAGGGCTTTGTGTCAAAGTCACAAATGTTGCTAATCAATGGCATACCTAGATGGGCATTGTAATAGACAGTCCTTGATGATCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR TCA 90 bp CTGGCTAAGACACCATCTATAACAGAGAGAGCAAGCAGGAAGGCTTTTAAGACATGTATAAAAAGTTTATaGAGACCAGGGTTCAGTCAC +
Preference number: 2 (lower is better)
Translates to: LAKTPSITERASRKAFKTCIKSL*RPGFSH
Trigger: GTGACTGAACCCTGGTCTTCATAAACTTTTTATACA...TGTCTTAAAAGCCTTCCTGCTTGCTCTCTCTGTTATAGATGGTGTCTTAGCCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR TCA 90 bp GATACCATGGGTAAATTCTCTTGGAGATCTCACTCTTGCCTGGAATTTCTGTCACAAAGCACAACACACTaGAGACATGTGTGCAAATAT +
Preference number: 2 (lower is better)
Translates to: DTMGKFSWRSHSCLEFLSQSTTH*RHVCKY
Trigger: ATATTTGCACACATGTCTTCAGTGTGTTGTGCTTTG...TGACAGAAATTCCAGGCAAGAGTGAGATCTCCAAGAGAATTTACCCATGGTATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR TCA 90 bp AAGACGACATATGAAGTGCCATACTTGGCTCTACTTAACACGGTAAGCATTCTCTACCAGGGAGCAGATTaGTTTTGCTTAATTACAGCT +
Preference number: 2 (lower is better)
Translates to: KTTYEVPYLALLNTVSILYQGAD*FCLITA
Trigger: AGCTGTAATTAAGCAAAATCAATCTGCTCCCTGGTA...GAGAATGCTTACCGTGTTAAGTAGAGCCAAGTATGGCACTTCATATGTCGTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR TCA 90 bp CAGAAAAGGGGCTTAATAAAGTTCTCTTTAAGCTTCACTGCTCATTCCTTGGTTAATGGATCCACTCTGTaGGTAATGCAGAGGGTGAAA +
Preference number: 2 (lower is better)
Translates to: QKRGLIKFSLSFTAHSLVNGSTL*VMQRVK
Trigger: TTTCACCCTCTGCATTACTCACAGAGTGGATCCATT...AACCAAGGAATGAGCAGTGAAGCTTAAAGAGAACTTTATTAAGCCCCTTTTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR TCA 90 bp TTTCATAGCAAAGAGAGGAGCAAGGTACACTTATATGTACTCCATGGCCAACTCGGTTATTTAGAATTCTaGAATCAAATGCCCTGCCTG +
Preference number: 2 (lower is better)
Translates to: FHSKERSKVHLYVLHGQLGYLEF*NQMPCL
Trigger: CAGGCAGGGCATTTGATTTCAGAATTCTAAATAACC...GAGTTGGCCATGGAGTACATATAAGTGTACCTTGCTCCTCTCTTTGCTATGAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR GCA 90 bp ACACTGCCCGGCAGCTCATTTATCTGTAGGGCAATTTGGCCCTTTCAAAGAAAATTTACTATACAGCTTTaGAAGAAAAACCACAGGACA +
Preference number: 2 (lower is better)
Translates to: TLPGSSFICRAIWPFQRKFTIQL*KKNHRT
Trigger: TGTCCTGTGGTTTTTCTTGCAAAGCTGTATAGTAAA...TTTTCTTTGAAAGGGCCAAATTGCCCTACAGATAAATGAGCTGCCGGGCAGTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR GCA 90 bp TTTCATAGCAAAGAGAGGAGCAAGGTACACTTATATGTACTCCATGGCCAACTCAGACGACATATGAAGTaGCATACTTGGCTCTACTTA +
Preference number: 2 (lower is better)
Translates to: FHSKERSKVHLYVLHGQLRRHMK*HTWLYL
Trigger: TAAGTAGAGCCAAGTATGGCACTTCATATGTCGTCT...GAGTTGGCCATGGAGTACATATAAGTGTACCTTGCTCCTCTCTTTGCTATGAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR GCA 90 bp GCAGTGAACAGAGAAAAATCAAAAGACATTGGCTGGAACAAGCAAGACAAGAGAAAACACCGCAATGCATaGTTGATTGTGGATTTCCCA +
Preference number: 2 (lower is better)
Translates to: AVNREKSKDIGWNKQDKRKHRNA*LIVDFP
Trigger: TGGGAAATCCACAATCAAGCATGCATTGCGGTGTTT...TCTCTTGTCTTGCTTGTTCCAGCCAATGTCTTTTGATTTTTCTCTGTTCACTGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp GATACCATGGGTAAATTCTCTTGGAGATCTCACTCTTGCCTGGAATTTCTGTCATGGCTTGAGAAAGATTaGCATATAGGTTTCTTAGGG +
Preference number: 2 (lower is better)
Translates to: DTMGKFSWRSHSCLEFLSWLEKD*HIGFLG
Trigger: CCCTAAGAAACCTATATGCCAATCTTTCTCAAGCCA...TGACAGAAATTCCAGGCAAGAGTGAGATCTCCAAGAGAATTTACCCATGGTATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp GATACCATGGGTAAATTCTCTTGGAGATCTCACTCTTGCCTGGAATTTCTGTCAGAGAGAAATAGAAAGTaGGTCAGACATGCATTAGAG +
Preference number: 2 (lower is better)
Translates to: DTMGKFSWRSHSCLEFLSERNRK*VRHALE
Trigger: CTCTAATGCATGTCTGACCCACTTTCTATTTCTCTC...TGACAGAAATTCCAGGCAAGAGTGAGATCTCCAAGAGAATTTACCCATGGTATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp AGATCTTTAAATCAAAATCTAAGCAGGGAAGGGTGCCAGACTATCGGCTACAGTAGCACAGGTCATGCATaGCTTGCAAGTCAAAAATTT +
Preference number: 2 (lower is better)
Translates to: RSLNQNLSREGCQTIGYSSTGHA*LASQKF
Trigger: AAATTTTTGACTTGCAAGCCATGCATGACCTGTGCT...ACTGTAGCCGATAGTCTGGCACCCTTCCCTGCTTAGATTTTGATTTAAAGATCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp TTTCATAGCAAAGAGAGGAGCAAGGTACACTTATATGTACTCCATGGCCAACTCAGCACAGGTCATGCATaGCTTGCAAGTCAAAAATTT +
Preference number: 2 (lower is better)
Translates to: FHSKERSKVHLYVLHGQLSTGHA*LASQKF
Trigger: AAATTTTTGACTTGCAAGCCATGCATGACCTGTGCT...GAGTTGGCCATGGAGTACATATAAGTGTACCTTGCTCCTCTCTTTGCTATGAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp TTTCATAGCAAAGAGAGGAGCAAGGTACACTTATATGTACTCCATGGCCAACTCATTCCCCAAAGTAGTTaGTTTGACATGGCATATGGA +
Preference number: 2 (lower is better)
Translates to: FHSKERSKVHLYVLHGQLIPQSS*FDMAYG
Trigger: TCCATATGCCATGTCAAACCAACTACTTTGGGGAAT...GAGTTGGCCATGGAGTACATATAAGTGTACCTTGCTCCTCTCTTTGCTATGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp GCAGTGAACAGAGAAAAATCAAAAGACATTGGCTGGAACAAGCAAGACAAGAGATGCCTGCTCAGTGTATaGGTGATCAATGGTTTTTCA +
Preference number: 2 (lower is better)
Translates to: AVNREKSKDIGWNKQDKRCLLSV*VINGFS
Trigger: TGAAAAACCATTGATCACCCATACACTGAGCAGGCA...TCTCTTGTCTTGCTTGTTCCAGCCAATGTCTTTTGATTTTTCTCTGTTCACTGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp ACACTGCCCGGCAGCTCATTTATCTGTAGGGCAATTTGGCCCTTTCAAAGAAAAAAAATCAAAAGACATTaGCTGGAACAAGCAAGACAA +
Preference number: 2 (lower is better)
Translates to: TLPGSSFICRAIWPFQRKKIKRH*LEQARQ
Trigger: TTGTCTTGCTTGTTCCAGCCAATGTCTTTTGATTTT...TTTTCTTTGAAAGGGCCAAATTGCCCTACAGATAAATGAGCTGCCGGGCAGTGT
41% GC, longest homopolymer 8 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CAA 90 bp GCAAGCAGGAAGGCTTTTAAGACATTCCGATTAATAAACAGCAGCTaGATATCCCCTATGAAGTCAGTATTTGGCAACATTTGGACAAGA +
Preference number: 2 (lower is better)
Translates to: ASRKAFKTFRLINSS*ISPMKSVFGNIWTR
Trigger: TCTTGTCCAAATGTTGCCAAATACTGACTTCATAGGGGATATCAAGCTGCTGTTTATTAATCGGAATGTCTTAAAAGCCTTCCTGCTTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR TCA 90 bp AGATCTTTAAATCAAAATCTAAGCAGGGAAGGGTGCCAGACTATCGGCTACAGTTGTATAAAAAGTTTATaGAGACCAGGGTTCAGTCAC +
Preference number: 2 (lower is better)
Translates to: RSLNQNLSREGCQTIGYSCIKSL*RPGFSH
Trigger: GTGACTGAACCCTGGTCTTCATAAACTTTTTATACA...ACTGTAGCCGATAGTCTGGCACCCTTCCCTGCTTAGATTTTGATTTAAAGATCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR TCA 90 bp CAGAAAAGGGGCTTAATAAAGTTCTCTTTAAGCTTCACTGCTCATTCCTTGGTTGGTTCACTTACATGGTaGGCATTTTTGTTCACCGTA +
Preference number: 2 (lower is better)
Translates to: QKRGLIKFSLSFTAHSLVGSLTW*AFLFTV
Trigger: TACGGTGAACAAAAATGCTCACCATGTAAGTGAACC...AACCAAGGAATGAGCAGTGAAGCTTAAAGAGAACTTTATTAAGCCCCTTTTCTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR TCA 90 bp AGATCTTTAAATCAAAATCTAAGCAGGGAAGGGTGCCAGACTATCGGCTACAGTATAGTTGAGCAATCATaGGAAACTGGTTCACTTACA +
Preference number: 2 (lower is better)
Translates to: RSLNQNLSREGCQTIGYSIVEQS*ETGSLT
Trigger: TGTAAGTGAACCAGTTTCTCATGATTGCTCAACTAT...ACTGTAGCCGATAGTCTGGCACCCTTCCCTGCTTAGATTTTGATTTAAAGATCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR TCA 90 bp AGATCTTTAAATCAAAATCTAAGCAGGGAAGGGTGCCAGACTATCGGCTACAGTTCTATCAAACAGGACTaGCTTAGAAAATTCCAAGAG +
Preference number: 2 (lower is better)
Translates to: RSLNQNLSREGCQTIGYSSIKQD*LRKFQE
Trigger: CTCTTGGAATTTTCTAAGTCAGTCCTGTTTGATAGA...ACTGTAGCCGATAGTCTGGCACCCTTCCCTGCTTAGATTTTGATTTAAAGATCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR TCA 90 bp TTTCATAGCAAAGAGAGGAGCAAGGTACACTTATATGTACTCCATGGCCAACTCTCAAGAGTTTCAGGTTaGAAAAGATCCAGCAACTAT +
Preference number: 2 (lower is better)
Translates to: FHSKERSKVHLYVLHGQLSRVSG*KRSSNY
Trigger: ATAGTTGCTGGATCTTTTTCAACCTGAAACTCTTGA...GAGTTGGCCATGGAGTACATATAAGTGTACCTTGCTCCTCTCTTTGCTATGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR GCA 90 bp CTGGCTAAGACACCATCTATAACAGAGAGAGCAAGCAGGAAGGCTTTTAAGACATATTTAGAGAGCTATTaGACCCACATGTACATTTTC +
Preference number: 2 (lower is better)
Translates to: LAKTPSITERASRKAFKTYLESY*THMYIF
Trigger: GAAAATGTACATGTGGGTGCAATAGCTCTCTAAATA...TGTCTTAAAAGCCTTCCTGCTTGCTCTCTCTGTTATAGATGGTGTCTTAGCCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR GCA 90 bp GATACCATGGGTAAATTCTCTTGGAGATCTCACTCTTGCCTGGAATTTCTGTCACTCTTTAAGCTTCACTaGTCATTCCTTGGTTTAAAG +
Preference number: 2 (lower is better)
Translates to: DTMGKFSWRSHSCLEFLSLFKLH*SFLGLK
Trigger: CTTTAAACCAAGGAATGAGCAGTGAAGCTTAAAGAG...TGACAGAAATTCCAGGCAAGAGTGAGATCTCCAAGAGAATTTACCCATGGTATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp TTGATTAGCAACATTTGTGACTTTGACACAAAGCCCTCCAAACTGAGGGAAAATGAGCCTTTACTGACATaGGATCACTATACACAGCAA +
Preference number: 2 (lower is better)
Translates to: LISNICDFDTKPSKLRENEPLLT*DHYTQQ
Trigger: TTGCTGTGTATAGTGATCCCATGTCAGTAAAGGCTC...ATTTTCCCTCAGTTTGGAGGGCTTTGTGTCAAAGTCACAAATGTTGCTAATCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp CAGAAAAGGGGCTTAATAAAGTTCTCTTTAAGCTTCACTGCTCATTCCTTGGTTCAGCTGAAACTCCAATaGATCCACTCTGTGAGTAAT +
Preference number: 2 (lower is better)
Translates to: QKRGLIKFSLSFTAHSLVQLKLQ*IHSVSN
Trigger: ATTACTCACAGAGTGGATCCATTGGAGTTTCAGCTG...AACCAAGGAATGAGCAGTGAAGCTTAAAGAGAACTTTATTAAGCCCCTTTTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp TTTCATAGCAAAGAGAGGAGCAAGGTACACTTATATGTACTCCATGGCCAACTCTGTATGGGTGATCAATaGTTTTTCAATGACATCACG +
Preference number: 2 (lower is better)
Translates to: FHSKERSKVHLYVLHGQLCMGDQ*FFNDIT
Trigger: CGTGATGTCATTGAAAAACCATTGATCACCCATACA...GAGTTGGCCATGGAGTACATATAAGTGTACCTTGCTCCTCTCTTTGCTATGAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp TTAATAAACAGCAGCTTGATATCCCCTATGAAGTCAGTATTTGGCAACATTTGGTGGAAGGGAACATGGTaGTGGTTACATATGTCCTCT +
Preference number: 2 (lower is better)
Translates to: LINSSLISPMKSVFGNIWWKGTW*WLHMSS
Trigger: AGAGGACATATGTAACCACCACCATGTTCCCTTCCA...CCAAATGTTGCCAAATACTGACTTCATAGGGGATATCAAGCTGCTGTTTATTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CAA 90 bp ACTGCCTTCTCTTACTGTTCAAACAGAGATAACATAGGTATCAACTaGTTCCCTGAAGGACATCTGTCACATCTGTTTCTCTTTTCTTTC +
Preference number: 2 (lower is better)
Translates to: TAFSYCSNRDNIGIN*FPEGHLSHLFLFSF
Trigger: GAAAGAAAAGAGAAACAGATGTGACAGATGTCCTTCAGGGAACAAGTTGATACCTATGTTATCTCTGTTTGAACAGTAAGAGAAGGCAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR TCA 90 bp TTGATTAGCAACATTTGTGACTTTGACACAAAGCCCTCCAAACTGAGGGAAAATCAAAGCACAACACACTaGAGACATGTGTGCAAATAT +
Preference number: 2 (lower is better)
Translates to: LISNICDFDTKPSKLRENQSTTH*RHVCKY
Trigger: ATATTTGCACACATGTCTTCAGTGTGTTGTGCTTTG...ATTTTCCCTCAGTTTGGAGGGCTTTGTGTCAAAGTCACAAATGTTGCTAATCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR TCA 90 bp TTAATAAACAGCAGCTTGATATCCCCTATGAAGTCAGTATTTGGCAACATTTGGTCTTGTGAGATGGCTTaGGAAAGATTGGCATATAGG +
Preference number: 2 (lower is better)
Translates to: LINSSLISPMKSVFGNIWSCEMA*ERLAYR
Trigger: CCTATATGCCAATCTTTCTCAAGCCATCTCACAAGA...CCAAATGTTGCCAAATACTGACTTCATAGGGGATATCAAGCTGCTGTTTATTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR GCA 90 bp GCAGTGAACAGAGAAAAATCAAAAGACATTGGCTGGAACAAGCAAGACAAGAGAAGGTCATGCATGGCTTaGAAGTCAAAAATTTTACAG +
Preference number: 2 (lower is better)
Translates to: AVNREKSKDIGWNKQDKRRSCMA*KSKILQ
Trigger: CTGTAAAATTTTTGACTTGCAAGCCATGCATGACCT...TCTCTTGTCTTGCTTGTTCCAGCCAATGTCTTTTGATTTTTCTCTGTTCACTGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp TTAATAAACAGCAGCTTGATATCCCCTATGAAGTCAGTATTTGGCAACATTTGGTTGAGATCAGTGATCTaGGAAACAGGGAAAGATCCA +
Preference number: 2 (lower is better)
Translates to: LINSSLISPMKSVFGNIWLRSVI*ETGKDP
Trigger: TGGATCTTTCCCTGTTTCCCAGATCACTGATCTCAA...CCAAATGTTGCCAAATACTGACTTCATAGGGGATATCAAGCTGCTGTTTATTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CAA 90 bp AAGAGTAACATCCATTGGAAACATAACATCCTTTACGCAACATTTTaGTCTATGTGTGTTTTCTCCTCCGAGAGAAATAGAAAGTGGGTC +
Preference number: 2 (lower is better)
Translates to: KSNIHWKHNILYATF*SMCVFSSERNRKWV
Trigger: GACCCACTTTCTATTTCTCTCGGAGGAGAAAACACACATAGACAAAAATGTTGCGTAAAGGATGTTATGTTTCCAATGGATGTTACTCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp TTAATAAACAGCAGCTTGATATCCCCTATGAAGTCAGTATTTGGCAACATTTGGTGGCTTGAGAAAGATTaGCATATAGGTTTCTTAGGG +
Preference number: 2 (lower is better)
Translates to: LINSSLISPMKSVFGNIWWLEKD*HIGFLG
Trigger: CCCTAAGAAACCTATATGCCAATCTTTCTCAAGCCA...CCAAATGTTGCCAAATACTGACTTCATAGGGGATATCAAGCTGCTGTTTATTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp TTAATAAACAGCAGCTTGATATCCCCTATGAAGTCAGTATTTGGCAACATTTGGATTCCCCAAAGTAGTTaGTTTGACATGGCATATGGA +
Preference number: 2 (lower is better)
Translates to: LINSSLISPMKSVFGNIWIPQSS*FDMAYG
Trigger: TCCATATGCCATGTCAAACCAACTACTTTGGGGAAT...CCAAATGTTGCCAAATACTGACTTCATAGGGGATATCAAGCTGCTGTTTATTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR TCA 90 bp TTAATAAACAGCAGCTTGATATCCCCTATGAAGTCAGTATTTGGCAACATTTGGAAATACATGACAAACTaGCTGACTTCAAGGGCAAAT +
Preference number: 2 (lower is better)
Translates to: LINSSLISPMKSVFGNIWKYMTN*LTSRAN
Trigger: ATTTGCCCTTGAAGTCAGTCAGTTTGTCATGTATTT...CCAAATGTTGCCAAATACTGACTTCATAGGGGATATCAAGCTGCTGTTTATTAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CCA 90 bp TTAATAAACAGCAGCTTGATATCCCCTATGAAGTCAGTATTTGGCAACATTTGGTGTATGGGTGATCAATaGTTTTTCAATGACATCACG +
Preference number: 2 (lower is better)
Translates to: LINSSLISPMKSVFGNIWCMGDQ*FFNDIT
Trigger: CGTGATGTCATTGAAAAACCATTGATCACCCATACA...CCAAATGTTGCCAAATACTGACTTCATAGGGGATATCAAGCTGCTGTTTATTAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR GCA 90 bp TTAATAAACAGCAGCTTGATATCCCCTATGAAGTCAGTATTTGGCAACATTTGGTTTACTATACAGCTTTaGAAGAAAAACCACAGGACA +
Preference number: 2 (lower is better)
Translates to: LINSSLISPMKSVFGNIWFTIQL*KKNHRT
Trigger: TGTCCTGTGGTTTTTCTTGCAAAGCTGTATAGTAAA...CCAAATGTTGCCAAATACTGACTTCATAGGGGATATCAAGCTGCTGTTTATTAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CCA 72 bp GAGCCTCCTTTCAGCTGCAACTGCTGTCCCTGCCACTaGCATGTGATTCTAAGCCCTGGCTGCTTGCCCCAC +
Preference number: 3 (lower is better)
Translates to: EPPFSCNCCPCH*HVILSPGCLPH
Trigger: GTGGGGCAAGCAGCCAGGGCTTAGAATCACATGCCAGTGGCAGGGACAGCAGTTGCAGCTGAAAGGAGGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CCA 72 bp CCAGGCACCGGCCAGGAGGCTGGTGTTGTAGACACTTaGCTTATGCACGCCCACAAAGTCTTACTCCCAGGA +
Preference number: 3 (lower is better)
Translates to: PGTGQEAGVVDT*LMHAHKVLLPG
Trigger: TCCTGGGAGTAAGACTTTGTGGGCGTGCATAAGCCAAGTGTCTACAACACCAGCCTCCTGGCCGGTGCCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CCA 72 bp GATGTGGGGGAAAGATCCAGGCACCGGCCAGGAGGCTaGTGTTGTAGACACTTGGCTTATGCACGCCCACAA +
Preference number: 3 (lower is better)
Translates to: DVGERSRHRPGG*CCRHLAYARPQ
Trigger: TTGTGGGCGTGCATAAGCCAAGTGTCTACAACACCAGCCTCCTGGCCGGTGCCTGGATCTTTCCCCCACATC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR GCA 72 bp CCACTAGAGCCTCCTTTCAGCTGCAACTGCTGTCCCTaGCACTGGCATGTGATTCTAAGCCCTGGCTGCTTG +
Preference number: 3 (lower is better)
Translates to: PLEPPFSCNCCP*HWHVILSPGCL
Trigger: CAAGCAGCCAGGGCTTAGAATCACATGCCAGTGGCAGGGACAGCAGTTGCAGCTGAAAGGAGGCTCTAGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CCA 72 bp TACACAGCAAAGTGCAAGTGGATGTTGGAGGTGATGTaGGGGAAAGATCCAGGCACCGGCCAGGAGGCTGGT +
Preference number: 3 (lower is better)
Translates to: YTAKCKWMLEVM*GKDPGTGQEAG
Trigger: ACCAGCCTCCTGGCCGGTGCCTGGATCTTTCCCCCACATCACCTCCAACATCCACTTGCACTTTGCTGTGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR TCA 72 bp CACTATACACAGCAAAGTGCAAGTGGATGTTGGAGGTaGTGTGGGGGAAAGATCCAGGCACCGGCCAGGAGG +
Preference number: 3 (lower is better)
Translates to: HYTQQSASGCWR*CGGKIQAPARR
Trigger: CCTCCTGGCCGGTGCCTGGATCTTTCCCCCACATCACCTCCAACATCCACTTGCACTTTGCTGTGTATAGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR TCA 72 bp CAGAGCCCAGGGTTTTGTCTGTACCATTCCCTCAGGTaGGGCTCCTTGGCAATGGGATGGCTAAGTCCACCT +
Preference number: 3 (lower is better)
Translates to: QSPGFCLYHSLR*GSLAMGWLSPP
Trigger: AGGTGGACTTAGCCATCCCATTGCCAAGGAGCCTCACCTGAGGGAATGGTACAGACAAAACCCTGGGCTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR GCA 72 bp CAAGTGACAATTGCAGGCCAGCGCTTGCACCAAATGTaGAGTGTCACCCCCATCTCATCACAGGGATCCCAT +
Preference number: 3 (lower is better)
Translates to: QVTIAGQRLHQM*SVTPISSQGSH
Trigger: ATGGGATCCCTGTGATGAGATGGGGGTGACACTGCACATTTGGTGCAAGCGCTGGCCTGCAATTGTCACTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR GCA 72 bp CGCACGCACACACACGTGAGCATACACACACAAACATaGACACACAGGAGCCAGCTCTGGGTCTTCACTGTT +
Preference number: 3 (lower is better)
Translates to: RTHTHVSIHTQT*THRSQLWVFTV
Trigger: AACAGTGAAGACCCAGAGCTGGCTCCTGTGTGTGCATGTTTGTGTGTGTATGCTCACGTGTGTGTGCGTGCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CAA 90 bp GTGGATTTCCCACTCACTGATGCAGTGATTCGGTTGGGAAAGAGCTCAAAAGTGTGTTCTCCTGGGATCTaGCTGAGACCTCACCCTCTG +
Preference number: 3 (lower is better)
Translates to: VDFPLTDAVIRLGKSSKVCSPGI*LRPHPL
Trigger: CAGAGGGTGAGGTCTCAGCAAGATCCCAGGAGAACA...CACTTTTGAGCTCTTTCCCAACCGAATCACTGCATCAGTGAGTGGGAAATCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CAA 90 bp ACAAGACCCTACACACACTTTCACAGCACAGGTCATGCATGGCTTGCAAGTCAAGGGCTGCTTCTGACCTaGCTTAGATCCTGTGCCACT +
Preference number: 3 (lower is better)
Translates to: TRPYTHFHSTGHAWLASQGLLLT*LRSCAT
Trigger: AGTGGCACAGGATCTAAGCAAGGTCAGAAGCAGCCC...TTGACTTGCAAGCCATGCATGACCTGTGCTGTGAAAGTGTGTGTAGGGTCTTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CAA 90 bp CTGGCTAAGACACCATCTATAACAGAGAGAGCAAGCAGGAAGGCTTTTAAGACAAGTTGGCAGGCCTCCTaGCCCCCTCCTCTAACACAC +
Preference number: 3 (lower is better)
Translates to: LAKTPSITERASRKAFKTSWQAS*PPPLTH
Trigger: GTGTGTTAGAGGAGGGGGCAAGGAGGCCTGCCAACT...TGTCTTAAAAGCCTTCCTGCTTGCTCTCTCTGTTATAGATGGTGTCTTAGCCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR TCA 72 bp CAGGCCAATCATGCTTCCATGTTCCAGGGCTGCTTCTaGCCTTGCTTAGATCCTGTGCCACTCTTTCCTTTC +
Preference number: 3 (lower is better)
Translates to: QANHASMFQGCF*PCLDPVPLFPF
Trigger: GAAAGGAAAGAGTGGCACAGGATCTAAGCAAGGTCAGAAGCAGCCCTGGAACATGGAAGCATGATTGGCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR GCA 72 bp ATCTGCAAGATGAAGCCACTAGAGCCTCCTTTCAGCTaGAACTGCTGTCCCTGCCACTGGCATGTGATTCTA +
Preference number: 3 (lower is better)
Translates to: ICKMKPLEPPFS*NCCPCHWHVIL
Trigger: TAGAATCACATGCCAGTGGCAGGGACAGCAGTTGCAGCTGAAAGGAGGCTCTAGTGGCTTCATCTTGCAGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR GCA 72 bp GACCAGCCCCAAAGAGAGTGCTCCCTATTGAAGGGCTaGAGAATTGGAAACTCAGCCCAATTCTGTTCCATC +
Preference number: 3 (lower is better)
Translates to: DQPQRECSLLKG*RIGNSAQFCSI
Trigger: GATGGAACAGAATTGGGCTGAGTTTCCAATTCTGCAGCCCTTCAATAGGGAGCACTCTCTTTGGGGCTGGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR TCA 72 bp GGGCGGGGAGCAATGAAGAGGAAGGCTAGGAAATTCTaGCATGGTACAGATTTTCAAAGGAAGGGACAGGAG +
Preference number: 3 (lower is better)
Translates to: GRGAMKRKARKF*HGTDFQRKGQE
Trigger: CTCCTGTCCCTTCCTTTGAAAATCTGTACCATGTCAGAATTTCCTAGCCTTCCTCTTCATTGCTCCCCGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CCA 72 bp ACTGACATGGGATCACTATACACAGCAAAGTGCAAGTaGATGTTGGAGGTGATGTGGGGGAAAGATCCAGGC +
Preference number: 3 (lower is better)
Translates to: TDMGSLYTAKCK*MLEVMWGKDPG
Trigger: GCCTGGATCTTTCCCCCACATCACCTCCAACATCCACTTGCACTTTGCTGTGTATAGTGATCCCATGTCAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CAA 90 bp CTGGCTAAGACACCATCTATAACAGAGAGAGCAAGCAGGAAGGCTTTTAAGACATGTTCTCCTGGGATCTaGCTGAGACCTCACCCTCTG +
Preference number: 3 (lower is better)
Translates to: LAKTPSITERASRKAFKTCSPGI*LRPHPL
Trigger: CAGAGGGTGAGGTCTCAGCAAGATCCCAGGAGAACA...TGTCTTAAAAGCCTTCCTGCTTGCTCTCTCTGTTATAGATGGTGTCTTAGCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CAA 90 bp CTGGCTAAGACACCATCTATAACAGAGAGAGCAAGCAGGAAGGCTTTTAAGACACGTCTGTTGTGCAGCTaGAAGATGAAGGCCAGCAGG +
Preference number: 3 (lower is better)
Translates to: LAKTPSITERASRKAFKTRLLCS*KMKASR
Trigger: CCTGCTGGCCTTCATCTTCAAGCTGCACAACAGACG...TGTCTTAAAAGCCTTCCTGCTTGCTCTCTCTGTTATAGATGGTGTCTTAGCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CAA 90 bp GCAGTGAACAGAGAAAAATCAAAAGACATTGGCTGGAACAAGCAAGACAAGAGAAGTTGGCAGGCCTCCTaGCCCCCTCCTCTAACACAC +
Preference number: 3 (lower is better)
Translates to: AVNREKSKDIGWNKQDKRSWQAS*PPPLTH
Trigger: GTGTGTTAGAGGAGGGGGCAAGGAGGCCTGCCAACT...TCTCTTGTCTTGCTTGTTCCAGCCAATGTCTTTTGATTTTTCTCTGTTCACTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR TCA 72 bp TCAGGGATTCAACAGAACAGCAGGGAGGAACACAGCTaGGTGGAGTCCTTGACAAACATCACTCATTCCACA +
Preference number: 3 (lower is better)
Translates to: SGIQQNSREEHS*VESLTNITHST
Trigger: TGTGGAATGAGTGATGTTTGTCAAGGACTCCACTCAGCTGTGTTCCTCCCTGCTGTTCTGTTGAATCCCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR TCA 72 bp AAGTTGAAGACCAGCCCCAAAGAGAGTGCTCCCTATTaGAGGGCTGCAGAATTGGAAACTCAGCCCAATTCT +
Preference number: 3 (lower is better)
Translates to: KLKTSPKESAPY*RAAELETQPNS
Trigger: AGAATTGGGCTGAGTTTCCAATTCTGCAGCCCTTCAATAGGGAGCACTCTCTTTGGGGCTGGTCTTCAACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR GCA 72 bp TCACTGCAAAGTCATCACTTTAGCACACGTCTGTTGTaGAGCTTGAAGATGAAGGCCAGCAGGCCAATCATG +
Preference number: 3 (lower is better)
Translates to: SLQSHHFSTRLL*SLKMKASRPIM
Trigger: CATGATTGGCCTGCTGGCCTTCATCTTCAAGCTGCACAACAGACGTGTGCTAAAGTGATGACTTTGCAGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CAA 90 bp ACTGACATGGGATCACTATACACAGCAAAGTGCAAGTGGATGTTGGAGGTGATGTCCATCACTTGCCTGTaGGGCTTCCAGCTTAACAAG +
Preference number: 3 (lower is better)
Translates to: TDMGSLYTAKCKWMLEVMSITCL*GFQLNK
Trigger: CTTGTTAAGCTGGAAGCCCAACAGGCAAGTGATGGA...CATCACCTCCAACATCCACTTGCACTTTGCTGTGTATAGTGATCCCATGTCAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CAA 90 bp AGATCTTTAAATCAAAATCTAAGCAGGGAAGGGTGCCAGACTATCGGCTACAGTTTCCCTGTCCATCACTaGCCTGTTGGGCTTCCAGCT +
Preference number: 3 (lower is better)
Translates to: RSLNQNLSREGCQTIGYSFPVHH*PVGLPA
Trigger: AGCTGGAAGCCCAACAGGCAAGTGATGGACAGGGAA...ACTGTAGCCGATAGTCTGGCACCCTTCCCTGCTTAGATTTTGATTTAAAGATCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CAA 90 bp ACACTGCCCGGCAGCTCATTTATCTGTAGGGCAATTTGGCCCTTTCAAAGAAAACCATCTAGGGAGGCATaGAGATCAGTGATCTGGGAA +
Preference number: 3 (lower is better)
Translates to: TLPGSSFICRAIWPFQRKPSREA*RSVIWE
Trigger: TTCCCAGATCACTGATCTCAATGCCTCCCTAGATGG...TTTTCTTTGAAAGGGCCAAATTGCCCTACAGATAAATGAGCTGCCGGGCAGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR GCA 72 bp GCCTTTACTGACATGGGATCACTATACACAGCAAAGTaGAAGTGGATGTTGGAGGTGATGTGGGGGAAAGAT +
Preference number: 3 (lower is better)
Translates to: AFTDMGSLYTAK*KWMLEVMWGKD
Trigger: ATCTTTCCCCCACATCACCTCCAACATCCACTTGCACTTTGCTGTGTATAGTGATCCCATGTCAGTAAAGGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CCA 72 bp ACACTGCCCGGCAGCTCATTTATCTGTAGGGCAATTTaGCCCTTTCAAAGAAAAGCTTCCCCAAAGAAACTG +
Preference number: 3 (lower is better)
Translates to: TLPGSSFICRAI*PFQRKASPKKL
Trigger: CAGTTTCTTTGGGGAAGCTTTTCTTTGAAAGGGCCAAATTGCCCTACAGATAAATGAGCTGCCGGGCAGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CAA 90 bp CTGGCTAAGACACCATCTATAACAGAGAGAGCAAGCAGGAAGGCTTTTAAGACACCTCACCCTCTGCACTaGTCTTTAGGTGAATCAAGT +
Preference number: 3 (lower is better)
Translates to: LAKTPSITERASRKAFKTPHPLH*SLGESS
Trigger: ACTTGATTCACCTAAAGACAAGTGCAGAGGGTGAGG...TGTCTTAAAAGCCTTCCTGCTTGCTCTCTCTGTTATAGATGGTGTCTTAGCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CAA 90 bp AGATCTTTAAATCAAAATCTAAGCAGGGAAGGGTGCCAGACTATCGGCTACAGTTCCATCACTTGCCTGTaGGGCTTCCAGCTTAACAAG +
Preference number: 3 (lower is better)
Translates to: RSLNQNLSREGCQTIGYSSITCL*GFQLNK
Trigger: CTTGTTAAGCTGGAAGCCCAACAGGCAAGTGATGGA...ACTGTAGCCGATAGTCTGGCACCCTTCCCTGCTTAGATTTTGATTTAAAGATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR GCA 72 bp ACACGGGTCTTGTCTTCTTGCTATAGAATTACAACCTaGACACTACTGCTCTCTACATACCCCAATGAGCTC +
Preference number: 3 (lower is better)
Translates to: TRVLSSCYRITT*TLLLSTYPNEL
Trigger: GAGCTCATTGGGGTATGTAGAGAGCAGTAGTGTGCAGGTTGTAATTCTATAGCAAGAAGACAAGACCCGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CAA 90 bp AGATCTTTAAATCAAAATCTAAGCAGGGAAGGGTGCCAGACTATCGGCTACAGTCCTCACCCTCTGCACTaGTCTTTAGGTGAATCAAGT +
Preference number: 3 (lower is better)
Translates to: RSLNQNLSREGCQTIGYSPHPLH*SLGESS
Trigger: ACTTGATTCACCTAAAGACAAGTGCAGAGGGTGAGG...ACTGTAGCCGATAGTCTGGCACCCTTCCCTGCTTAGATTTTGATTTAAAGATCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CAA 90 bp TTAATAAACAGCAGCTTGATATCCCCTATGAAGTCAGTATTTGGCAACATTTGGTTCCCTGTCCATCACTaGCCTGTTGGGCTTCCAGCT +
Preference number: 3 (lower is better)
Translates to: LINSSLISPMKSVFGNIWFPVHH*PVGLPA
Trigger: AGCTGGAAGCCCAACAGGCAAGTGATGGACAGGGAA...CCAAATGTTGCCAAATACTGACTTCATAGGGGATATCAAGCTGCTGTTTATTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CAA 90 bp ACACTGCCCGGCAGCTCATTTATCTGTAGGGCAATTTGGCCCTTTCAAAGAAAATTCAGAAAACACCATTaGGCCAACAAGTTGAAGACC +
Preference number: 3 (lower is better)
Translates to: TLPGSSFICRAIWPFQRKFRKHH*ANKLKT
Trigger: GGTCTTCAACTTGTTGGCCAAATGGTGTTTTCTGAA...TTTTCTTTGAAAGGGCCAAATTGCCCTACAGATAAATGAGCTGCCGGGCAGTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR TCA 72 bp GCAACATTTGTGACTTTGACACAAAGCCCTCCAAACTaGGGGAAAATGACGAGTTCTTCTGATGCTCTGTCT +
Preference number: 3 (lower is better)
Translates to: ATFVTLTQSPPN*GKMTSSSDALS
Trigger: AGACAGAGCATCAGAAGAACTCGTCATTTTCCCTCAGTTTGGAGGGCTTTGTGTCAAAGTCACAAATGTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR TCA 72 bp TGTCAAGAAGTAATTTCTCCATCTAGGTCCAGAGTATaGGTTGGCCAACTTCTGGTGTGGTTCCGGAATGTT +
Preference number: 3 (lower is better)
Translates to: CQEVISPSRSRV*VGQLLVWFRNV
Trigger: AACATTCCGGAACCACACCAGAAGTTGGCCAACTCATACTCTGGACCTAGATGGAGAAATTACTTCTTGACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR GCA 72 bp ATTAGACATTGCCTATATATTTCCCTGTCCATCACTTaGCTGTTGGGCTTCCAGCTTAACAAGCACAGAGCA +
Preference number: 3 (lower is better)
Translates to: IRHCLYISLSIT*LLGFQLNKHRA
Trigger: TGCTCTGTGCTTGTTAAGCTGGAAGCCCAACAGGCAAGTGATGGACAGGGAAATATATAGGCAATGTCTAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR GCA 72 bp CAGTATTTGGCAACATTTGGACAAGAATTTCTACACTaGCCGGCAGCTCATTTATCTGTAGGGCAATTTGGC +
Preference number: 3 (lower is better)
Translates to: QYLATFGQEFLH*PAAHLSVGQFG
Trigger: GCCAAATTGCCCTACAGATAAATGAGCTGCCGGGCAGTGTAGAAATTCTTGTCCAAATGTTGCCAAATACTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CCA 72 bp AGTTCTTCTGATGCTCTGTCTGAGCCTTTACTGACATaGGATCACTATACACAGCAAAGTGCAAGTGGATGT +
Preference number: 3 (lower is better)
Translates to: SSSDALSEPLLT*DHYTQQSASGC
Trigger: ACATCCACTTGCACTTTGCTGTGTATAGTGATCCCATGTCAGTAAAGGCTCAGACAGAGCATCAGAAGAACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CCA 72 bp TTGCAATGTGTTATACAAGACCAGAAAGCCCACACATaGGTCTTTAAGAATGGAAGGGAACATGGTGGTGGT +
Preference number: 3 (lower is better)
Translates to: LQCVIQDQKAHT*VFKNGREHGGG
Trigger: ACCACCACCATGTTCCCTTCCATTCTTAAAGACCCATGTGTGGGCTTTCTGGTCTTGTATAACACATTGCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CAA 90 bp CAGAAAAGGGGCTTAATAAAGTTCTCTTTAAGCTTCACTGCTCATTCCTTGGTTAAGTGCAAGTGGATGTaGGAGGTGATGTGGGGGAAA +
Preference number: 3 (lower is better)
Translates to: QKRGLIKFSLSFTAHSLVKCKWM*EVMWGK
Trigger: TTTCCCCCACATCACCTCCAACATCCACTTGCACTT...AACCAAGGAATGAGCAGTGAAGCTTAAAGAGAACTTTATTAAGCCCCTTTTCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CAA 90 bp TTTCATAGCAAAGAGAGGAGCAAGGTACACTTATATGTACTCCATGGCCAACTCTTTAGCACACGTCTGTaGTGCAGCTTGAAGATGAAG +
Preference number: 3 (lower is better)
Translates to: FHSKERSKVHLYVLHGQLFSTRL*CSLKMK
Trigger: CTTCATCTTCAAGCTGCACAACAGACGTGTGCTAAA...GAGTTGGCCATGGAGTACATATAAGTGTACCTTGCTCCTCTCTTTGCTATGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CAA 90 bp TTAATAAACAGCAGCTTGATATCCCCTATGAAGTCAGTATTTGGCAACATTTGGTCAGAGCCCAGGGTTTaGTCTGTACCATTCCCTCAG +
Preference number: 3 (lower is better)
Translates to: LINSSLISPMKSVFGNIWSEPRV*SVPFPQ
Trigger: CTGAGGGAATGGTACAGACAAAACCCTGGGCTCTGA...CCAAATGTTGCCAAATACTGACTTCATAGGGGATATCAAGCTGCTGTTTATTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR TCA 72 bp GCACCCACATATGCCCACACCAAATACATGACAAACTaGCTGACTTCAAGGGCAAATAGAAACACTGTAAAC +
Preference number: 3 (lower is better)
Translates to: APTYAHTKYMTN*LTSRANRNTVN
Trigger: GTTTACAGTGTTTCTATTTGCCCTTGAAGTCAGTCAGTTTGTCATGTATTTGGTGTGGGCATATGTGGGTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR GCA 72 bp AGGAGATCTTTAAATCAAAATCTAAGCAGGGAAGGGTaGCAGACTATCGGCTACAGTCTGAGTTTTATACGG +
Preference number: 3 (lower is better)
Translates to: RRSLNQNLSREG*QTIGYSLSFIR
Trigger: CCGTATAAAACTCAGACTGTAGCCGATAGTCTGGCACCCTTCCCTGCTTAGATTTTGATTTAAAGATCTCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR GCA 72 bp AACAGCCTCAGAACAGCACTAATCTCACCATCTGATTaGAATGTGTTATACAAGACCAGAAAGCCCACACAT +
Preference number: 3 (lower is better)
Translates to: NSLRTALISPSD*NVLYKTRKPTH
Trigger: ATGTGTGGGCTTTCTGGTCTTGTATAACACATTGCAATCAGATGGTGAGATTAGTGCTGTTCTGAGGCTGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CAA 90 bp TTAATAAACAGCAGCTTGATATCCCCTATGAAGTCAGTATTTGGCAACATTTGGAAGTGCAAGTGGATGTaGGAGGTGATGTGGGGGAAA +
Preference number: 3 (lower is better)
Translates to: LINSSLISPMKSVFGNIWKCKWM*EVMWGK
Trigger: TTTCCCCCACATCACCTCCAACATCCACTTGCACTT...CCAAATGTTGCCAAATACTGACTTCATAGGGGATATCAAGCTGCTGTTTATTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CAA 90 bp TGGAAACTCAGCCCAATTCTGTTCCATCAAAGCAAGCACAGTTGGCTTCCACTATTCACCGTACTACTTTaGGCAGTAGAAACATTTGAA +
Preference number: 3 (lower is better)
Translates to: WKLSPILFHQSKHSWLPLFTVLL*AVETFE
Trigger: TTCAAATGTTTCTACTGCCAAAAGTAGTACGGTGAA...TAGTGGAAGCCAACTGTGCTTGCTTTGATGGAACAGAATTGGGCTGAGTTTCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CAA 90 bp ACACTGCCCGGCAGCTCATTTATCTGTAGGGCAATTTGGCCCTTTCAAAGAAAATTTTACTATACAGCTTaGCAAGAAAAACCACAGGAC +
Preference number: 3 (lower is better)
Translates to: TLPGSSFICRAIWPFQRKFYYTA*QEKPQD
Trigger: GTCCTGTGGTTTTTCTTGCAAAGCTGTATAGTAAAA...TTTTCTTTGAAAGGGCCAAATTGCCCTACAGATAAATGAGCTGCCGGGCAGTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CAA 90 bp GATACCATGGGTAAATTCTCTTGGAGATCTCACTCTTGCCTGGAATTTCTGTCACTACCAGGGAGCAGATaGATTTTGCTTAATTACAGC +
Preference number: 3 (lower is better)
Translates to: DTMGKFSWRSHSCLEFLSLPGSR*ILLNYS
Trigger: GCTGTAATTAAGCAAAATCAATCTGCTCCCTGGTAG...TGACAGAAATTCCAGGCAAGAGTGAGATCTCCAAGAGAATTTACCCATGGTATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CAA 90 bp TTTCATAGCAAAGAGAGGAGCAAGGTACACTTATATGTACTCCATGGCCAACTCCTACCAGGGAGCAGATaGATTTTGCTTAATTACAGC +
Preference number: 3 (lower is better)
Translates to: FHSKERSKVHLYVLHGQLLPGSR*ILLNYS
Trigger: GCTGTAATTAAGCAAAATCAATCTGCTCCCTGGTAG...GAGTTGGCCATGGAGTACATATAAGTGTACCTTGCTCCTCTCTTTGCTATGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR TCA 72 bp CAGCTTAACAAGCACAGAGCAAGCTTAAATCACAGATaGAGAGAAATGAAGGAACTTGGCAAAGCACAACAC +
Preference number: 3 (lower is better)
Translates to: QLNKHRASLNHR*REMKELGKAQH
Trigger: GTGTTGTGCTTTGCCAAGTTCCTTCATTTCTCTTCATCTGTGATTTAAGCTTGCTCTGTGCTTGTTAAGCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR TCA 72 bp CTATCAAACAGGACTGACTTAGAAAATTCCAAGAGCTaGACTAGCATACAGCTGAAACTCCAATGGATCCAC +
Preference number: 3 (lower is better)
Translates to: LSNRTDLENSKS*TSIQLKLQWIH
Trigger: GTGGATCCATTGGAGTTTCAGCTGTATGCTAGTTCAGCTCTTGGAATTTTCTAAGTCAGTCCTGTTTGATAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR GCA 72 bp CTACACACACTTTCACAGCACAGGTCATGCATGGCTTaGAAGTCAAAAATTTTACAGCTACTGTCTAGCTAT +
Preference number: 3 (lower is better)
Translates to: LHTLSQHRSCMA*KSKILQLLSSY
Trigger: ATAGCTAGACAGTAGCTGTAAAATTTTTGACTTGCAAGCCATGCATGACCTGTGCTGTGAAAGTGTGTGTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CCA 72 bp CCATGGGTAAATTCTCTTGGAGATCTCACTCTTGCCTaGAATTTCTGTCAGTATGAGAATGACTTTTCAGGT +
Preference number: 3 (lower is better)
Translates to: PWVNSLGDLTLA*NFCQYENDFSG
Trigger: ACCTGAAAAGTCATTCTCATACTGACAGAAATTCCAGGCAAGAGTGAGATCTCCAAGAGAATTTACCCATGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CCA 72 bp CAGGCAGTGAACAGAGAAAAATCAAAAGACATTGGCTaGAACAAGCAAGACAAGAGAAGTGCTCAGAGAAAT +
Preference number: 3 (lower is better)
Translates to: QAVNREKSKDIG*NKQDKRSAQRN
Trigger: ATTTCTCTGAGCACTTCTCTTGTCTTGCTTGTTCCAGCCAATGTCTTTTGATTTTTCTCTGTTCACTGCCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CAA 90 bp CTGGCTAAGACACCATCTATAACAGAGAGAGCAAGCAGGAAGGCTTTTAAGACATTAATAAACAGCAGCTaGATATCCCCTATGAAGTCA +
Preference number: 3 (lower is better)
Translates to: LAKTPSITERASRKAFKTLINSS*ISPMKS
Trigger: TGACTTCATAGGGGATATCAAGCTGCTGTTTATTAA...TGTCTTAAAAGCCTTCCTGCTTGCTCTCTCTGTTATAGATGGTGTCTTAGCCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CAA 90 bp TTTCATAGCAAAGAGAGGAGCAAGGTACACTTATATGTACTCCATGGCCAACTCCTTTACGCAACATTTTaGTCTATGTGTGTTTTCTCC +
Preference number: 3 (lower is better)
Translates to: FHSKERSKVHLYVLHGQLLYATF*SMCVFS
Trigger: GGAGAAAACACACATAGACAAAAATGTTGCGTAAAG...GAGTTGGCCATGGAGTACATATAAGTGTACCTTGCTCCTCTCTTTGCTATGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CAA 90 bp AAGACGACATATGAAGTGCCATACTTGGCTCTACTTAACACGGTAAGCATTCTCTTTTACTATACAGCTTaGCAAGAAAAACCACAGGAC +
Preference number: 3 (lower is better)
Translates to: KTTYEVPYLALLNTVSILFYYTA*QEKPQD
Trigger: GTCCTGTGGTTTTTCTTGCAAAGCTGTATAGTAAAA...GAGAATGCTTACCGTGTTAAGTAGAGCCAAGTATGGCACTTCATATGTCGTCTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CAA 90 bp TTTCATAGCAAAGAGAGGAGCAAGGTACACTTATATGTACTCCATGGCCAACTCAAAAATCAAAAGACATaGGCTGGAACAAGCAAGACA +
Preference number: 3 (lower is better)
Translates to: FHSKERSKVHLYVLHGQLKNQKT*AGTSKT
Trigger: TGTCTTGCTTGTTCCAGCCAATGTCTTTTGATTTTT...GAGTTGGCCATGGAGTACATATAAGTGTACCTTGCTCCTCTCTTTGCTATGAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR TCA 72 bp AGCCATGTGGCTAGTGGCCACTCTACTAAACAACACTaGACAAATACAGAACAATTTCCATCAATCCCAAAA +
Preference number: 3 (lower is better)
Translates to: SHVASGHSTKQH*TNTEQFPSIPK
Trigger: TTTTGGGATTGATGGAAATTGTTCTGTATTTGTTCAGTGTTGTTTAGTAGAGTGGCCACTAGCCACATGGCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR GCA 72 bp AAAAGACATTGGCTGGAACAAGCAAGACAAGAGAAGTaGTCAGAGAAATTGATTCAGAATGGAGTATCTCAG +
Preference number: 3 (lower is better)
Translates to: KRHWLEQARQEK*SEKLIQNGVSQ
Trigger: CTGAGATACTCCATTCTGAATCAATTTCTCTGAGCACTTCTCTTGTCTTGCTTGTTCCAGCCAATGTCTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR TCA 72 bp ACTTCACATTTCCTTGCCACCAATATATCCAACCACTaGCTACTGTGTTCTCAAAAAGCAAATGCTGAGTTA +
Preference number: 3 (lower is better)
Translates to: TSHFLATNISNH*LLCSQKANAEL
Trigger: TAACTCAGCATTTGCTTTTTGAGAACACAGTAGTCAGTGGTTGGATATATTGGTGGCAAGGAAATGTGAAGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CAA 90 bp CAGAAAAGGGGCTTAATAAAGTTCTCTTTAAGCTTCACTGCTCATTCCTTGGTTGCCAAAAGGTCTGTTTaGATTATTTTGATTTGGGTG +
Preference number: 3 (lower is better)
Translates to: QKRGLIKFSLSFTAHSLVAKRSV*IILIWV
Trigger: CACCCAAATCAAAATAATCAAAACAGACCTTTTGGC...AACCAAGGAATGAGCAGTGAAGCTTAAAGAGAACTTTATTAAGCCCCTTTTCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CAA 90 bp CAGAAAAGGGGCTTAATAAAGTTCTCTTTAAGCTTCACTGCTCATTCCTTGGTTTTCACCGTACTACTTTaGGCAGTAGAAACATTTGAA +
Preference number: 3 (lower is better)
Translates to: QKRGLIKFSLSFTAHSLVFTVLL*AVETFE
Trigger: TTCAAATGTTTCTACTGCCAAAAGTAGTACGGTGAA...AACCAAGGAATGAGCAGTGAAGCTTAAAGAGAACTTTATTAAGCCCCTTTTCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CAA 90 bp CAGAAAAGGGGCTTAATAAAGTTCTCTTTAAGCTTCACTGCTCATTCCTTGGTTCTTTACGCAACATTTTaGTCTATGTGTGTTTTCTCC +
Preference number: 3 (lower is better)
Translates to: QKRGLIKFSLSFTAHSLVLYATF*SMCVFS
Trigger: GGAGAAAACACACATAGACAAAAATGTTGCGTAAAG...AACCAAGGAATGAGCAGTGAAGCTTAAAGAGAACTTTATTAAGCCCCTTTTCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR TCA 72 bp TCAGCATTTTGTGATCCATGGATGAGAAAATCATGCTaGTGCTTTCTACTTTATGTTAACTCCGATTACAGG +
Preference number: 3 (lower is better)
Translates to: SAFCDPWMRKSC*CFLLYVNSDYR
Trigger: CCTGTAATCGGAGTTAACATAAAGTAGAAAGCATCAGCATGATTTTCTCATCCATGGATCACAAAATGCTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR TCA 72 bp AGAATGGAGTATCTCAGAGATAGTAGTTTACAATCTTaGAACATAACAAGGACCAAAAGAGGAGAGAGAGAG +
Preference number: 3 (lower is better)
Translates to: RMEYLRDSSLQS*NITRTKRGERE
Trigger: CTCTCTCTCTCCTCTTTTGGTCCTTGTTATGTTTCAAGATTGTAAACTACTATCTCTGAGATACTCCATTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR GCA 72 bp CAACTCTTTCAGAATACACACAGCCAGACTAGGGACTaGTTCTTTTATGCTAACAGATCTTTCTTCATAAAT +
Preference number: 3 (lower is better)
Translates to: QLFQNTHSQTRD*FFYANRSFFIN
Trigger: ATTTATGAAGAAAGATCTGTTAGCATAAAAGAAGCAGTCCCTAGTCTGGCTGTGTGTATTCTGAAAGAGTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CCA 72 bp TATCTCTTTCAAATAGATACCATGGGTAAATTCTCTTaGAGATCTCACTCTTGCCTGGAATTTCTGTCAGTA +
Preference number: 3 (lower is better)
Translates to: YLFQIDTMGKFS*RSHSCLEFLSV
Trigger: TACTGACAGAAATTCCAGGCAAGAGTGAGATCTCCAAGAGAATTTACCCATGGTATCTATTTGAAAGAGATA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR-3UTR CAA 90 bp TTAATAAACAGCAGCTTGATATCCCCTATGAAGTCAGTATTTGGCAACATTTGGTTCAAGAGTTTCAGGTaGAAAAAGATCCAGCAACTA +
Preference number: 3 (lower is better)
Translates to: LINSSLISPMKSVFGNIWFKSFR*KKIQQL
Trigger: TAGTTGCTGGATCTTTTTCAACCTGAAACTCTTGAA...CCAAATGTTGCCAAATACTGACTTCATAGGGGATATCAAGCTGCTGTTTATTAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR TCA 72 bp AAGCTTCCCCAAAGAAACTGTCTCCATTATTATAAATaGAACAAGTCAGGAACTAGAATTAACAGCCTCAGA +
Preference number: 3 (lower is better)
Translates to: KLPQRNCLHYYK*NKSGTRINSLR
Trigger: TCTGAGGCTGTTAATTCTAGTTCCTGACTTGTTTCATTTATAATAATGGAGACAGTTTCTTTGGGGAAGCTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CCA 72 bp AAGACAAGAGAAGTGCTCAGAGAAATTGATTCAGAATaGAGTATCTCAGAGATAGTAGTTTACAATCTTGAA +
Preference number: 3 (lower is better)
Translates to: KTREVLREIDSE*SISEIVVYNLE
Trigger: TTCAAGATTGTAAACTACTATCTCTGAGATACTCCATTCTGAATCAATTTCTCTGAGCACTTCTCTTGTCTT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CAA 72 bp TCCAGGCACCGGCCAGGAGGCTGGTGTTGTAGACACTaGGCTTATGCACGCCCACAAAGTCTTACTCCCAGG +
Preference number: 4 (lower is better)
Translates to: SRHRPGGWCCRH*AYARPQSLTPR
Trigger: CCTGGGAGTAAGACTTTGTGGGCGTGCATAAGCCAAGTGTCTACAACACCAGCCTCCTGGCCGGTGCCTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
CDS-3UTR TCA 90 bp GTGGATTTCCCACTCACTGATGCAGTGATTCGGTTGGGAAAGAGCTCAAAAGTGGGATGGTCACCACGGTaGGAGACTTCTGCTGGCTCC +
Preference number: 4 (lower is better)
Translates to: VDFPLTDAVIRLGKSSKVGWSPR*ETSAGS
Trigger: GGAGCCAGCAGAAGTCTCTCACCGTGGTGACCATCC...CACTTTTGAGCTCTTTCCCAACCGAATCACTGCATCAGTGAGTGGGAAATCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
CDS-3UTR CCA 90 bp ACACTGCCCGGCAGCTCATTTATCTGTAGGGCAATTTGGCCCTTTCAAAGAAAAGTGAGAGACTTCTGCTaGCTCCCTGGCAGCAGGCGG +
Preference number: 4 (lower is better)
Translates to: TLPGSSFICRAIWPFQRKVRDFC*LPGSRR
Trigger: CCGCCTGCTGCCAGGGAGCCAGCAGAAGTCTCTCAC...TTTTCTTTGAAAGGGCCAAATTGCCCTACAGATAAATGAGCTGCCGGGCAGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CAA 72 bp ATGGGATCACTATACACAGCAAAGTGCAAGTGGATGTaGGAGGTGATGTGGGGGAAAGATCCAGGCACCGGC +
Preference number: 4 (lower is better)
Translates to: MGSLYTAKCKWM*EVMWGKDPGTG
Trigger: GCCGGTGCCTGGATCTTTCCCCCACATCACCTCCAACATCCACTTGCACTTTGCTGTGTATAGTGATCCCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CAA 72 bp ACTCAGCCCAATTCTGTTCCATCAAAGCAAGCACAGTaGGCTTCCACTACACTGGGGCGGGGAGCAATGAAG +
Preference number: 4 (lower is better)
Translates to: TQPNSVPSKQAQ*ASTTLGRGAMK
Trigger: CTTCATTGCTCCCCGCCCCAGTGTAGTGGAAGCCAACTGTGCTTGCTTTGATGGAACAGAATTGGGCTGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CAA 72 bp TGGGCATGTCTGTCTATCTATTCAGAGCCCAGGGTTTaGTCTGTACCATTCCCTCAGGTGAGGCTCCTTGGC +
Preference number: 4 (lower is better)
Translates to: WACLSIYSEPRV*SVPFPQVRLLG
Trigger: GCCAAGGAGCCTCACCTGAGGGAATGGTACAGACAAAACCCTGGGCTCTGAATAGATAGACAGACATGCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
CDS-3UTR TCA 90 bp CTGGCTAAGACACCATCTATAACAGAGAGAGCAAGCAGGAAGGCTTTTAAGACACACAGGCCACCAGGATaGCAGTGCACACGCCAGACC +
Preference number: 4 (lower is better)
Translates to: LAKTPSITERASRKAFKTHRPPG*QCTRQT
Trigger: GGTCTGGCGTGTGCACTGTCATCCTGGTGGCCTGTG...TGTCTTAAAAGCCTTCCTGCTTGCTCTCTCTGTTATAGATGGTGTCTTAGCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
CDS-3UTR GCA 90 bp ACACTGCCCGGCAGCTCATTTATCTGTAGGGCAATTTGGCCCTTTCAAAGAAAAACGGTGAGAGACTTCTaGTGGCTCCCTGGCAGCAGG +
Preference number: 4 (lower is better)
Translates to: TLPGSSFICRAIWPFQRKTVRDF*WLPGSR
Trigger: CCTGCTGCCAGGGAGCCAGCAGAAGTCTCTCACCGT...TTTTCTTTGAAAGGGCCAAATTGCCCTACAGATAAATGAGCTGCCGGGCAGTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
CDS-3UTR CCA 90 bp ACTGACATGGGATCACTATACACAGCAAAGTGCAAGTGGATGTTGGAGGTGATGCTGGTCCTCATCTGCTaGAGGCACACCGAGCAGCAG +
Preference number: 4 (lower is better)
Translates to: TDMGSLYTAKCKWMLEVMLVLIC*RHTEQQ
Trigger: CTGCTGCTCGGTGTGCCTCCAGCAGATGAGGACCAG...CATCACCTCCAACATCCACTTGCACTTTGCTGTGTATAGTGATCCCATGTCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
CDS-3UTR CCA 90 bp TGGAAACTCAGCCCAATTCTGTTCCATCAAAGCAAGCACAGTTGGCTTCCACTACTGGTCCTCATCTGCTaGAGGCACACCGAGCAGCAG +
Preference number: 4 (lower is better)
Translates to: WKLSPILFHQSKHSWLPLLVLIC*RHTEQQ
Trigger: CTGCTGCTCGGTGTGCCTCCAGCAGATGAGGACCAG...TAGTGGAAGCCAACTGTGCTTGCTTTGATGGAACAGAATTGGGCTGAGTTTCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
CDS-3UTR CCA 90 bp GTGGATTTCCCACTCACTGATGCAGTGATTCGGTTGGGAAAGAGCTCAAAAGTGCACCTTACGTCCTTCTaGCTGGTCCTCATCTGCTGG +
Preference number: 4 (lower is better)
Translates to: VDFPLTDAVIRLGKSSKVHLTSF*LVLICW
Trigger: CCAGCAGATGAGGACCAGCCAGAAGGACGTAAGGTG...CACTTTTGAGCTCTTTCCCAACCGAATCACTGCATCAGTGAGTGGGAAATCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
CDS-3UTR CCA 90 bp ACAAGACCCTACACACACTTTCACAGCACAGGTCATGCATGGCTTGCAAGTCAACACCTTACGTCCTTCTaGCTGGTCCTCATCTGCTGG +
Preference number: 4 (lower is better)
Translates to: TRPYTHFHSTGHAWLASQHLTSF*LVLICW
Trigger: CCAGCAGATGAGGACCAGCCAGAAGGACGTAAGGTG...TTGACTTGCAAGCCATGCATGACCTGTGCTGTGAAAGTGTGTGTAGGGTCTTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
CDS-3UTR GCA 90 bp AAGACGACATATGAAGTGCCATACTTGGCTCTACTTAACACGGTAAGCATTCTCACGGTGAGAGACTTCTaGTGGCTCCCTGGCAGCAGG +
Preference number: 4 (lower is better)
Translates to: KTTYEVPYLALLNTVSILTVRDF*WLPGSR
Trigger: CCTGCTGCCAGGGAGCCAGCAGAAGTCTCTCACCGT...GAGAATGCTTACCGTGTTAAGTAGAGCCAAGTATGGCACTTCATATGTCGTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
CDS-3UTR CCA 90 bp GATACCATGGGTAAATTCTCTTGGAGATCTCACTCTTGCCTGGAATTTCTGTCAACACGCCAGACCATGTaGAGCTCTTCACCACGCCCC +
Preference number: 4 (lower is better)
Translates to: DTMGKFSWRSHSCLEFLSTRQTM*SSSPRP
Trigger: GGGGCGTGGTGAAGAGCTCCACATGGTCTGGCGTGT...TGACAGAAATTCCAGGCAAGAGTGAGATCTCCAAGAGAATTTACCCATGGTATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CAA 72 bp TCTCCTGGGATCTTGCTGAGACCTCACCCTCTGCACTaGTCTTTAGGTGAATCAAGTGACAATTGCAGGCCA +
Preference number: 4 (lower is better)
Translates to: SPGILLRPHPLH*SLGESSDNCRP
Trigger: TGGCCTGCAATTGTCACTTGATTCACCTAAAGACAAGTGCAGAGGGTGAGGTCTCAGCAAGATCCCAGGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CAA 72 bp AAACATCCTGTAAGGAACGAAGAGAAAGGCCCACTGTaGGAGCTCTCAGGAGGACCCTCAGTGCTTTGTTCT +
Preference number: 4 (lower is better)
Translates to: KHPVRNEEKGPL*ELSGGPSVLCS
Trigger: AGAACAAAGCACTGAGGGTCCTCCTGAGAGCTCCAACAGTGGGCCTTTCTCTTCGTTCCTTACAGGATGTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
CDS-3UTR TCA 90 bp TTGATTAGCAACATTTGTGACTTTGACACAAAGCCCTCCAAACTGAGGGAAAATCACAGGCCACCAGGATaGCAGTGCACACGCCAGACC +
Preference number: 4 (lower is better)
Translates to: LISNICDFDTKPSKLRENHRPPG*QCTRQT
Trigger: GGTCTGGCGTGTGCACTGTCATCCTGGTGGCCTGTG...ATTTTCCCTCAGTTTGGAGGGCTTTGTGTCAAAGTCACAAATGTTGCTAATCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
CDS-3UTR CCA 90 bp TTGATTAGCAACATTTGTGACTTTGACACAAAGCCCTCCAAACTGAGGGAAAATGTGAGAGACTTCTGCTaGCTCCCTGGCAGCAGGCGG +
Preference number: 4 (lower is better)
Translates to: LISNICDFDTKPSKLRENVRDFC*LPGSRR
Trigger: CCGCCTGCTGCCAGGGAGCCAGCAGAAGTCTCTCAC...ATTTTCCCTCAGTTTGGAGGGCTTTGTGTCAAAGTCACAAATGTTGCTAATCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CAA 72 bp CAAAGTCATCACTTTAGCACACGTCTGTTGTGCAGCTaGAAGATGAAGGCCAGCAGGCCAATCATGCTTCCA +
Preference number: 4 (lower is better)
Translates to: QSHHFSTRLLCS*KMKASRPIMLP
Trigger: TGGAAGCATGATTGGCCTGCTGGCCTTCATCTTCAAGCTGCACAACAGACGTGTGCTAAAGTGATGACTTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CAA 72 bp CTGAAACATCAAGTATATAGAAGTTGGCAGGCCTCCTaGCCCCCTCCTCTAACACACAACCACACACACACA +
Preference number: 4 (lower is better)
Translates to: LKHQVYRSWQAS*PPPLTHNHTHT
Trigger: TGTGTGTGTGTGGTTGTGTGTTAGAGGAGGGGGCAAGGAGGCCTGCCAACTTCTATATACTTGATGTTTCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CAA 72 bp CCTTGGGAATCTCCTCATGAGCCAAGCACCTTCCATTaGTGTCTTCAACTTAAGCAGGTGATCCCTGGTAGA +
Preference number: 4 (lower is better)
Translates to: PWESPHEPSTFH*CLQLKQVIPGR
Trigger: TCTACCAGGGATCACCTGCTTAAGTTGAAGACACAAATGGAAGGTGCTTGGCTCATGAGGAGATTCCCAAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CAA 72 bp ACATGGTGGTGGTTACATATGTCCTCTATTGGGAGTTaGTGGCCAACTTCCCCAGACTGCTGGCAATTTCCA +
Preference number: 4 (lower is better)
Translates to: TWWWLHMSSIGS*WPTSPDCWQFP
Trigger: TGGAAATTGCCAGCAGTCTGGGGAAGTTGGCCACAAACTCCCAATAGAGGACATATGTAACCACCACCATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
CDS-3UTR TCA 90 bp TTAATAAACAGCAGCTTGATATCCCCTATGAAGTCAGTATTTGGCAACATTTGGGGATGGTCACCACGGTaGGAGACTTCTGCTGGCTCC +
Preference number: 4 (lower is better)
Translates to: LINSSLISPMKSVFGNIWGWSPR*ETSAGS
Trigger: GGAGCCAGCAGAAGTCTCTCACCGTGGTGACCATCC...CCAAATGTTGCCAAATACTGACTTCATAGGGGATATCAAGCTGCTGTTTATTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
CDS-3UTR CCA 90 bp TTAATAAACAGCAGCTTGATATCCCCTATGAAGTCAGTATTTGGCAACATTTGGACACGCCAGACCATGTaGAGCTCTTCACCACGCCCC +
Preference number: 4 (lower is better)
Translates to: LINSSLISPMKSVFGNIWTRQTM*SSSPRP
Trigger: GGGGCGTGGTGAAGAGCTCCACATGGTCTGGCGTGT...CCAAATGTTGCCAAATACTGACTTCATAGGGGATATCAAGCTGCTGTTTATTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CAA 72 bp ATTTCACTGCAAAGTCATCACTTTAGCACACGTCTGTaGTGCAGCTTGAAGATGAAGGCCAGCAGGCCAATC +
Preference number: 4 (lower is better)
Translates to: ISLQSHHFSTRL*CSLKMKASRPI
Trigger: GATTGGCCTGCTGGCCTTCATCTTCAAGCTGCACAACAGACGTGTGCTAAAGTGATGACTTTGCAGTGAAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CAA 72 bp CATTGCCTATATATTTCCCTGTCCATCACTTGCCTGTaGGGCTTCCAGCTTAACAAGCACAGAGCAAGCTTA +
Preference number: 4 (lower is better)
Translates to: HCLYISLSITCL*GFQLNKHRASL
Trigger: TAAGCTTGCTCTGTGCTTGTTAAGCTGGAAGCCCAACAGGCAAGTGATGGACAGGGAAATATATAGGCAATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
CDS-3UTR GCA 90 bp GATACCATGGGTAAATTCTCTTGGAGATCTCACTCTTGCCTGGAATTTCTGTCAATGAAGACTGGGGTATaGTCGGAAGTGTGTGGTATG +
Preference number: 4 (lower is better)
Translates to: DTMGKFSWRSHSCLEFLSMKTGV*SEVCGM
Trigger: CATACCACACACTTCCGAGCATACCCCAGTCTTCAT...TGACAGAAATTCCAGGCAAGAGTGAGATCTCCAAGAGAATTTACCCATGGTATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CAA 72 bp AGGAAGCATGCAAACATCTTCATAGTTGTCACCATCTaGAAACTGTTCTCCTGGGATCTTGCTGAGACCTCA +
Preference number: 4 (lower is better)
Translates to: RKHANIFIVVTI*KLFSWDLAETS
Trigger: TGAGGTCTCAGCAAGATCCCAGGAGAACAGTTTCAAGATGGTGACAACTATGAAGATGTTTGCATGCTTCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CAA 72 bp ATTGTGGATTTCCCACTCACTGATGCAGTGATTCGGTaGGGAAAGAGCTCAAAAGTGAACTGGGATTTCATC +
Preference number: 4 (lower is better)
Translates to: IVDFPLTDAVIR*GKSSKVNWDFI
Trigger: GATGAAATCCCAGTTCACTTTTGAGCTCTTTCCCAACCGAATCACTGCATCAGTGAGTGGGAAATCCACAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
CDS-3UTR CCA 90 bp TTTCATAGCAAAGAGAGGAGCAAGGTACACTTATATGTACTCCATGGCCAACTCAAGTTTGATGAAGACTaGGGTATGCTCGGAAGTGTG +
Preference number: 4 (lower is better)
Translates to: FHSKERSKVHLYVLHGQLKFDED*GMLGSV
Trigger: CACACTTCCGAGCATACCCCAGTCTTCATCAAACTT...GAGTTGGCCATGGAGTACATATAAGTGTACCTTGCTCCTCTCTTTGCTATGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CAA 72 bp TATCGGCTACAGTCTGAGTTTTATACGGAATGTATCTaGAGCTGGACTCTCCACTCCCCTTTACTAACAGAA +
Preference number: 4 (lower is better)
Translates to: YRLQSEFYTECI*SWTLHSPLLTE
Trigger: TTCTGTTAGTAAAGGGGAGTGGAGAGTCCAGCTCAAGATACATTCCGTATAAAACTCAGACTGTAGCCGATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
CDS-3UTR GCA 90 bp TTGATTAGCAACATTTGTGACTTTGACACAAAGCCCTCCAAACTGAGGGAAAATATGAAGACTGGGGTATaGTCGGAAGTGTGTGGTATG +
Preference number: 4 (lower is better)
Translates to: LISNICDFDTKPSKLRENMKTGV*SEVCGM
Trigger: CATACCACACACTTCCGAGCATACCCCAGTCTTCAT...ATTTTCCCTCAGTTTGGAGGGCTTTGTGTCAAAGTCACAAATGTTGCTAATCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
CDS-3UTR CCA 90 bp CAGAAAAGGGGCTTAATAAAGTTCTCTTTAAGCTTCACTGCTCATTCCTTGGTTATGCTCGGAAGTGTGTaGTATGGCAATGACTGCCAA +
Preference number: 4 (lower is better)
Translates to: QKRGLIKFSLSFTAHSLVMLGSV*YGNDCQ
Trigger: TTGGCAGTCATTGCCATACCACACACTTCCGAGCAT...AACCAAGGAATGAGCAGTGAAGCTTAAAGAGAACTTTATTAAGCCCCTTTTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CAA 72 bp AGGACTGTCTATTACAATGCCCATCTAGGTATGCCATaGATTAGCAACATTTGTGACTTTGACACAAAGCCC +
Preference number: 4 (lower is better)
Translates to: RTVYYNAHLGMP*ISNICDFDTKP
Trigger: GGGCTTTGTGTCAAAGTCACAAATGTTGCTAATCAATGGCATACCTAGATGGGCATTGTAATAGACAGTCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
CDS-3UTR CCA 90 bp TTGATTAGCAACATTTGTGACTTTGACACAAAGCCCTCCAAACTGAGGGAAAATAAGTTTGATGAAGACTaGGGTATGCTCGGAAGTGTG +
Preference number: 4 (lower is better)
Translates to: LISNICDFDTKPSKLRENKFDED*GMLGSV
Trigger: CACACTTCCGAGCATACCCCAGTCTTCATCAAACTT...ATTTTCCCTCAGTTTGGAGGGCTTTGTGTCAAAGTCACAAATGTTGCTAATCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CAA 72 bp TCTTACTGTTCAAACAGAGATAACATAGGTATCAACTaGTTCCCTGAAGGACATCTGTCACATCTGTTTCTC +
Preference number: 4 (lower is better)
Translates to: SYCSNRDNIGIN*FPEGHLSHLFL
Trigger: GAGAAACAGATGTGACAGATGTCCTTCAGGGAACAAGTTGATACCTATGTTATCTCTGTTTGAACAGTAAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CAA 72 bp ATCCATTGGAAACATAACATCCTTTACGCAACATTTTaGTCTATGTGTGTTTTCTCCTCCGAGAGAAATAGA +
Preference number: 4 (lower is better)
Translates to: IHWKHNILYATF*SMCVFSSERNR
Trigger: TCTATTTCTCTCGGAGGAGAAAACACACATAGACAAAAATGTTGCGTAAAGGATGTTATGTTTCCAATGGAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CAA 72 bp AAAATTTTTCTAAAGACGACATATGAAGTGCCATACTaGGCTCTACTTAACACGGTAAGCATTCTCTTGCTT +
Preference number: 4 (lower is better)
Translates to: KIFLKTTYEVPY*ALLNTVSILLL
Trigger: AAGCAAGAGAATGCTTACCGTGTTAAGTAGAGCCAAGTATGGCACTTCATATGTCGTCTTTAGAAAAATTTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
3UTR CAA 72 bp AAGGCTTTTAAGACATTCCGATTAATAAACAGCAGCTaGATATCCCCTATGAAGTCAGTATTTGGCAACATT +
Preference number: 4 (lower is better)
Translates to: KAFKTFRLINSS*ISPMKSVFGNI
Trigger: AATGTTGCCAAATACTGACTTCATAGGGGATATCAAGCTGCTGTTTATTAATCGGAATGTCTTAAAAGCCTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
CDS CCA 90 bp ATTGCTTGGAAGTTTGATGAAGACTGGGGTATGCTCGGAAGTGTGTaGTATGGCAATGACTGCCAAGACCTCTGGGTCATCGGGCAGTTG +
Preference number: 5 (lower is better)
Translates to: IAWKFDEDWGMLGSV*YGNDCQDLWVIGQL
Trigger: CAACTGCCCGATGACCCAGAGGTCTTGGCAGTCATTGCCATACCACACACTTCCGAGCATACCCCAGTCTTCATCAAACTTCCAAGCAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
CDS-3UTR CAA 90 bp GTGGATTTCCCACTCACTGATGCAGTGATTCGGTTGGGAAAGAGCTCAAAAGTGGAGATGCAGGACATGTaGTGTAGCACAATGCCCAGG +
Preference number: 5 (lower is better)
Translates to: VDFPLTDAVIRLGKSSKVEMQDM*CSTMPR
Trigger: CCTGGGCATTGTGCTACACAACATGTCCTGCATCTC...CACTTTTGAGCTCTTTCCCAACCGAATCACTGCATCAGTGAGTGGGAAATCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
CDS GCA 72 bp CACCCATTGCTTGGAAGTTTGATGAAGACTGGGGTATaGTCGGAAGTGTGTGGTATGGCAATGACTGCCAAG +
Preference number: 6 (lower is better)
Translates to: HPLLGSLMKTGV*SEVCGMAMTAK
Trigger: CTTGGCAGTCATTGCCATACCACACACTTCCGAGCATACCCCAGTCTTCATCAAACTTCCAAGCAATGGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2
CDS CCA 72 bp AAGTTTGATGAAGACTGGGGTATGCTCGGAAGTGTGTaGTATGGCAATGACTGCCAAGACCTCTGGGTCATC +
Preference number: 6 (lower is better)
Translates to: KFDEDWGMLGSV*YGNDCQDLWVI
Trigger: GATGACCCAGAGGTCTTGGCAGTCATTGCCATACCACACACTTCCGAGCATACCCCAGTCTTCATCAAACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058688.7
ENSMUST00000172299.2