Pregenerated sensors for RNF149 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048234Ensembl transcript IDs: ENSMUST00000062525.11, ENSMUST00000195136.2, ENSMUST00000195705.2
Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTGGTTCTGAAGTCTCTGCAGACTACACAGCTCAAGCCAGCTGAATaGTCGCTCTCGCTCTCGCGCGTGCTCTCCCTCTCTCTCTCTTGC | + |
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Preference number: 1 (lower is better) Translates to: VVLKSLQTTQLKPAE*SLSLSRVLSLSLSC Trigger: GCAAGAGAGAGAGAGGGAGAGCACGCGCGAGAGCGAGAGCGAGCATTCAGCTGGCTTGAGCTGTGTAGTCTGCAGAGACTTCAGAACCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| 3UTR TCA 90 bp | ATGTGTGGTTCTGAAGTCTCTGCAGACTACACAGCTCAAGCCAGCTaGATGCTCGCTCTCGCTCTCGCGCGTGCTCTCCCTCTCTCTCTC | + |
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Preference number: 1 (lower is better) Translates to: MCGSEVSADYTAQAS*MLALALARALPLSL Trigger: GAGAGAGAGAGGGAGAGCACGCGCGAGAGCGAGAGCGAGCATTCAGCTGGCTTGAGCTGTGTAGTCTGCAGAGACTTCAGAACCACACAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| 3UTR TCA 90 bp | TTCTTTAAGACAGGGGCGGTGTGGCCCAGACTCGCTCGAGGAAGATaGTGGAAGGTTGCTTTCACTCCTCTCCTCATCTTGGGATGTCAC | + |
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Preference number: 1 (lower is better) Translates to: FFKTGAVWPRLARGR*WKVAFTPLLILGCH Trigger: GTGACATCCCAAGATGAGGAGAGGAGTGAAAGCAACCTTCCATCATCTTCCTCGAGCGAGTCTGGGCCACACCGCCCCTGTCTTAAAGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000195136.2 |
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| 3UTR TCA 90 bp | CTAGTGTTCTTTTCACAATTCCACATAAGAAGGAATGTGTGGTTCTaGAGTCTCTGCAGACTACACAGCTCAAGCCAGCTGAATGCTCGC | + |
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Preference number: 1 (lower is better) Translates to: LVFFSQFHIRRNVWF*SLCRLHSSSQLNAR Trigger: GCGAGCATTCAGCTGGCTTGAGCTGTGTAGTCTGCAGAGACTTCAGAACCACACATTCCTTCTTATGTGGAATTGTGAAAAGAACACTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| 3UTR-3UTR TCA 90 bp | CGCTCTCGCGCGTGCTCTCCCTCTCTCTCTCTTGCTCTCTCTCTCTCTCTCTCTCAGGAGACGTTCATGTaGTCAATAAGGAACTACACT | + |
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Preference number: 2 (lower is better) Translates to: RSRACSPSLSLALSLSLSQETFM*SIRNYT Trigger: AGTGTAGTTCCTTATTGATCACATGAACGTCTCCTG...AGAGAGAGAGAGAGAGAGAGCAAGAGAGAGAGAGGGAGAGCACGCGCGAGAGCG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| 3UTR-3UTR GCA 90 bp | ATATGGATCCTCCATGCTGAGGCTCACTCCTGCCGGCTCCTAGTAATGCTGTGTAAGATGATGGAAGGTTaGTTTCACTCCTCTCCTCAT | + |
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Preference number: 2 (lower is better) Translates to: IWILHAEAHSCRLLVMLCKMMEG*FHSSPH Trigger: ATGAGGAGAGGAGTGAAAGCAACCTTCCATCATCTT...ACACAGCATTACTAGGAGCCGGCAGGAGTGAGCCTCAGCATGGAGGATCCATAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000195136.2 |
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| 3UTR CAA 90 bp | CTTCAACTCGGTGAGCTCTGTCTAAAAAGCCCAAGAGACAGACTCTaGTTTTATACCACAGAGGCTAGTCTAGTACTCAGAAACAACCCC | + |
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Preference number: 2 (lower is better) Translates to: LQLGELCLKSPRDRL*FYTTEASLVLRNNP Trigger: GGGGTTGTTTCTGAGTACTAGACTAGCCTCTGTGGTATAAAACAAGAGTCTGTCTCTTGGGCTTTTTAGACAGAGCTCACCGAGTTGAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| 3UTR-3UTR CCA 90 bp | GATGGCCACAAACACCACAGACTGACCGCTGATGAACTCCTGCATATGACGAGTAATTTCCCGTCCTTTTaGGTAGCTAATCATAATGAC | + |
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Preference number: 2 (lower is better) Translates to: DGHKHHRLTADELLHMTSNFPSF*VANHND Trigger: GTCATTATGATTAGCTACCCAAAAGGACGGGAAATT...ACTCGTCATATGCAGGAGTTCATCAGCGGTCAGTCTGTGGTGTTTGTGGCCATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000195705.2 |
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| 3UTR-3UTR CCA 90 bp | CATCATGGTGATGAAGGCGATGGCCACAAACACCACAGACTGACCGCTGATGAATATCCGCATTTTTACTaGAATTCCTTTTTGCACCAG | + |
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Preference number: 2 (lower is better) Translates to: HHGDEGDGHKHHRLTADEYPHFY*NSFLHQ Trigger: CTGGTGCAAAAAGGAATTCCAGTAAAAATGCGGATA...TTCATCAGCGGTCAGTCTGTGGTGTTTGTGGCCATCGCCTTCATCACCATGATG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000195705.2 |
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| 3UTR TCA 72 bp | TCTGAAGTCTCTGCAGACTACACAGCTCAAGCCAGCTaGATGCTCGCTCTCGCTCTCGCGCGTGCTCTCCCT | + |
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Preference number: 3 (lower is better) Translates to: SEVSADYTAQAS*MLALALARALP Trigger: AGGGAGAGCACGCGCGAGAGCGAGAGCGAGCATTCAGCTGGCTTGAGCTGTGTAGTCTGCAGAGACTTCAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| 3UTR GCA 72 bp | AAGTCTCTGCAGACTACACAGCTCAAGCCAGCTGAATaGTCGCTCTCGCTCTCGCGCGTGCTCTCCCTCTCT | + |
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Preference number: 3 (lower is better) Translates to: KSLQTTQLKPAE*SLSLSRVLSLS Trigger: AGAGAGGGAGAGCACGCGCGAGAGCGAGAGCGAGCATTCAGCTGGCTTGAGCTGTGTAGTCTGCAGAGACTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| 3UTR GCA 72 bp | GCTAGCATATGGATCCTCCATGCTGAGGCTCACTCCTaGCGGCTCCTAGTAATGCTGTGTCCTCCCCTGCAT | + |
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Preference number: 3 (lower is better) Translates to: ASIWILHAEAHS*RLLVMLCPPLH Trigger: ATGCAGGGGAGGACACAGCATTACTAGGAGCCGGCAGGAGTGAGCCTCAGCATGGAGGATCCATATGCTAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000195136.2 |
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| 3UTR-3UTR CAA 90 bp | TGGATCCTCCATGCTGAGGCTCACTCCTGCCGGCTCCTAGTAATGCTGTGTCCTGAAGATGATGGAAGGTaGCTTTCACTCCTCTCCTCA | + |
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Preference number: 3 (lower is better) Translates to: WILHAEAHSCRLLVMLCPEDDGR*LSLLSS Trigger: TGAGGAGAGGAGTGAAAGCAACCTTCCATCATCTTC...AGGACACAGCATTACTAGGAGCCGGCAGGAGTGAGCCTCAGCATGGAGGATCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000195136.2 |
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| 3UTR-3UTR CAA 90 bp | CTAAGCACTATACAGAATTTAGACAACAGTCTTCAAAGACTTTCACCAGCGAGAGGCCTCAGCCACAGTTaGCACCACTGCCCACGGCAA | + |
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Preference number: 3 (lower is better) Translates to: LSTIQNLDNSLQRLSPARGLSHS*HHCPRQ Trigger: TTGCCGTGGGCAGTGGTGCAAACTGTGGCTGAGGCC...TCTCGCTGGTGAAAGTCTTTGAAGACTGTTGTCTAAATTCTGTATAGTGCTTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| 3UTR TCA 72 bp | CCAAGTTCTACAGTCTCCGCTCAGGAGACGTTCATGTaGTCAATAAGGAACTACACTTCACACTTCAACTCG | + |
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Preference number: 3 (lower is better) Translates to: PSSTVSAQETFM*SIRNYTSHFNS Trigger: CGAGTTGAAGTGTGAAGTGTAGTTCCTTATTGATCACATGAACGTCTCCTGAGCGGAGACTGTAGAACTTGG 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| 3UTR TCA 72 bp | TTTTCACAATTCCACATAAGAAGGAATGTGTGGTTCTaGAGTCTCTGCAGACTACACAGCTCAAGCCAGCTG | + |
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Preference number: 3 (lower is better) Translates to: FSQFHIRRNVWF*SLCRLHSSSQL Trigger: CAGCTGGCTTGAGCTGTGTAGTCTGCAGAGACTTCAGAACCACACATTCCTTCTTATGTGGAATTGTGAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| 3UTR-3UTR CAA 90 bp | CACAAGTTTAGAATCAACAACAATGGACTCCTTGCTCTTCAAAGTATGTATCTACCAAGAGACAGACTCTaGTTTTATACCACAGAGGCT | + |
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Preference number: 3 (lower is better) Translates to: HKFRINNNGLLALQSMYLPRDRL*FYTTEA Trigger: AGCCTCTGTGGTATAAAACAAGAGTCTGTCTCTTGG...TAGATACATACTTTGAAGAGCAAGGAGTCCATTGTTGTTGATTCTAAACTTGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| 3UTR TCA 72 bp | CTCAGAAACAACCCCTCCACATACATCTGTGACAGGTaGTACAACAAAACTTATGATAGACATCATAATTTA | + |
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Preference number: 3 (lower is better) Translates to: LRNNPSTYICDR*YNKTYDRHHNL Trigger: TAAATTATGATGTCTATCATAAGTTTTGTTGTATCACCTGTCACAGATGTATGTGGAGGGGTTGTTTCTGAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS-3UTR GCA 90 bp | CTGCCCACGGCAAGATTTCTCATTTCCAAGTTCTACAGTCTCCGCTCAGGAGACACGCCCACCAGGCCCTaGCTCTCCTCCCGGAGCGAG | + |
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Preference number: 4 (lower is better) Translates to: LPTARFLISKFYSLRSGDTPTRP*LSSRSE Trigger: CTCGCTCCGGGAGGAGAGGCAGGGCCTGGTGGGCGT...GTCTCCTGAGCGGAGACTGTAGAACTTGGAAATGAGAAATCTTGCCGTGGGCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS-3UTR GCA 90 bp | CGCTCTCGCGCGTGCTCTCCCTCTCTCTCTCTTGCTCTCTCTCTCTCTCTCTCTGCTGAGGCTCACTCCTaGCGGCTCCTAGTAATGCTG | + |
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Preference number: 4 (lower is better) Translates to: RSRACSPSLSLALSLSLSAEAHS*RLLVML Trigger: CAGCATTACTAGGAGCCGGCAGGAGTGAGCCTCAGC...AGAGAGAGAGAGAGAGAGAGCAAGAGAGAGAGAGGGAGAGCACGCGCGAGAGCG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS-3UTR CCA 90 bp | ATCCTCCATGCTGAGGCTCACTCCTGCCGGCTCCTAGTAATGCTGTGTCCTCCCAACAGAAACCCTTCCTaGGGCAGCTTCTGGGGTGGG | + |
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Preference number: 4 (lower is better) Translates to: ILHAEAHSCRLLVMLCPPNRNPS*GSFWGG Trigger: CCCACCCCAGAAGCTGCCCCAGGAAGGGTTTCTGTT...GGGAGGACACAGCATTACTAGGAGCCGGCAGGAGTGAGCCTCAGCATGGAGGAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000195136.2 |
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| CDS-3UTR GCA 90 bp | GCTCCTAGTAATGCTGTGTCCTCCCCTGCATCTTCTTTAAGACAGGGGCGGTGTGGGGTGGGTAGCTCCTaGGTATCCTCAGGGTCCCCT | + |
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Preference number: 4 (lower is better) Translates to: APSNAVSSPASSLRQGRCGVGSS*VSSGSP Trigger: AGGGGACCCTGAGGATACGCAGGAGCTACCCACCCC...ACACCGCCCCTGTCTTAAAGAAGATGCAGGGGAGGACACAGCATTACTAGGAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000195136.2 |
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| 3UTR CAA 72 bp | CTTTGTAGCAGTCTGGCTACACAGCCCGAAGCAGGCTaGAACTCAAGCTCCTCGGGCCTCAGCCACAGTTTG | + |
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Preference number: 4 (lower is better) Translates to: LCSSLATQPEAG*NSSSSGLSHSL Trigger: CAAACTGTGGCTGAGGCCCGAGGAGCTTGAGTTCAAGCCTGCTTCGGGCTGTGTAGCCAGACTGCTACAAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS-3UTR CCA 90 bp | CAGTTTGCACCACTGCCCACGGCAAGATTTCTCATTTCCAAGTTCTACAGTCTCTTCCCGCGTGAGACATaGGCTCGGTGGCGTTCCCGT | + |
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Preference number: 4 (lower is better) Translates to: QFAPLPTARFLISKFYSLFPRET*ARWRSR Trigger: ACGGGAACGCCACCGAGCCCATGTCTCACGCGGGAA...GAGACTGTAGAACTTGGAAATGAGAAATCTTGCCGTGGGCAGTGGTGCAAACTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS-3UTR TCA 90 bp | ATATGGATCCTCCATGCTGAGGCTCACTCCTGCCGGCTCCTAGTAATGCTGTGTACAAACACCACAGACTaGCCGCTGATGAACTCCTGC | + |
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Preference number: 4 (lower is better) Translates to: IWILHAEAHSCRLLVMLCTNTTD*PLMNSC Trigger: GCAGGAGTTCATCAGCGGTCAGTCTGTGGTGTTTGT...ACACAGCATTACTAGGAGCCGGCAGGAGTGAGCCTCAGCATGGAGGATCCATAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000195136.2 |
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| CDS-3UTR TCA 90 bp | CAGTTTGCACCACTGCCCACGGCAAGATTTCTCATTTCCAAGTTCTACAGTCTCATGGATCCTCCATGCTaGGGCTCACTCCTGCCGGCT | + |
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Preference number: 4 (lower is better) Translates to: QFAPLPTARFLISKFYSLMDPPC*GSLLPA Trigger: AGCCGGCAGGAGTGAGCCTCAGCATGGAGGATCCAT...GAGACTGTAGAACTTGGAAATGAGAAATCTTGCCGTGGGCAGTGGTGCAAACTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS-3UTR GCA 90 bp | TGCCCACGGCAAGATTTCTCATTTCCAAGTTCTACAGTCTCCGCTCAGGAGACGACCGTCAGGTTCGACTaGGGGTCCACGTATTCGATG | + |
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Preference number: 4 (lower is better) Translates to: CPRQDFSFPSSTVSAQETTVRFD*GSTYSM Trigger: CATCGAATACGTGGACCCGCAGTCGAACCTGACGGT...CGTCTCCTGAGCGGAGACTGTAGAACTTGGAAATGAGAAATCTTGCCGTGGGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS-3UTR TCA 90 bp | TCAGAAACAACCCCTCCACATACATCTGTGACAGGTGATACAACAAAACTTATGCCAGCACCTTGTCCTTaGAGGTGCAGCCGCCTCGCG | + |
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Preference number: 4 (lower is better) Translates to: SETTPPHTSVTGDTTKLMPAPCP*RCSRLA Trigger: CGCGAGGCGGCTGCACCTTCAAGGACAAGGTGCTGG...CATAAGTTTTGTTGTATCACCTGTCACAGATGTATGTGGAGGGGTTGTTTCTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS-3UTR TCA 90 bp | CTGCCCACGGCAAGATTTCTCATTTCCAAGTTCTACAGTCTCCGCTCAGGAGACCTGACTTCCAAACTGTaGGCCAGTATACAGGAAGCG | + |
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Preference number: 4 (lower is better) Translates to: LPTARFLISKFYSLRSGDLTSKL*ASIQEA Trigger: CGCTTCCTGTATACTGGCTCACAGTTTGGAAGTCAG...GTCTCCTGAGCGGAGACTGTAGAACTTGGAAATGAGAAATCTTGCCGTGGGCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS-3UTR CCA 90 bp | CGCTCTCGCGCGTGCTCTCCCTCTCTCTCTCTTGCTCTCTCTCTCTCTCTCTCTATCAAGTTTACACATTaGACACGTTCGGTGATCCAA | + |
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Preference number: 4 (lower is better) Translates to: RSRACSPSLSLALSLSLSIKFTH*TRSVIQ Trigger: TTGGATCACCGAACGTGTCCAATGTGTAAACTTGAT...AGAGAGAGAGAGAGAGAGAGCAAGAGAGAGAGAGGGAGAGCACGCGCGAGAGCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS-3UTR TCA 90 bp | CTCGAGGAAGATGATGGAAGGTTGCTTTCACTCCTCTCCTCATCTTGGGATGTCCTGACTTCCAAACTGTaGGCCAGTATACAGGAAGCG | + |
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Preference number: 4 (lower is better) Translates to: LEEDDGRLLSLLSSSWDVLTSKL*ASIQEA Trigger: CGCTTCCTGTATACTGGCTCACAGTTTGGAAGTCAG...GACATCCCAAGATGAGGAGAGGAGTGAAAGCAACCTTCCATCATCTTCCTCGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000195136.2 |
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| CDS-3UTR CCA 90 bp | CTCGAGGAAGATGATGGAAGGTTGCTTTCACTCCTCTCCTCATCTTGGGATGTCCAGGGTCCCCTTGCATaGCAGGATTCTGATAACATC | + |
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Preference number: 4 (lower is better) Translates to: LEEDDGRLLSLLSSSWDVQGPLA*QDSDNI Trigger: GATGTTATCAGAATCCTGCCATGCAAGGGGACCCTG...GACATCCCAAGATGAGGAGAGGAGTGAAAGCAACCTTCCATCATCTTCCTCGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000195136.2 |
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| CDS-3UTR CCA 90 bp | TTGCACCACTGCCCACGGCAAGATTTCTCATTTCCAAGTTCTACAGTCTCCGCTCTCCTCTCCTCATCTTaGGATGTCACACTCAGATTC | + |
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Preference number: 4 (lower is better) Translates to: LHHCPRQDFSFPSSTVSALLSSS*DVTLRF Trigger: GAATCTGAGTGTGACATCCCAAGATGAGGAGAGGAG...AGCGGAGACTGTAGAACTTGGAAATGAGAAATCTTGCCGTGGGCAGTGGTGCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS-3UTR TCA 90 bp | CGCTCAGGAGACGTTCATGTGATCAATAAGGAACTACACTTCACACTTCAACTCACAAACACCACAGACTaGCCGCTGATGAACTCCTGC | + |
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Preference number: 4 (lower is better) Translates to: RSGDVHVINKELHFTLQLTNTTD*PLMNSC Trigger: GCAGGAGTTCATCAGCGGTCAGTCTGTGGTGTTTGT...GAGTTGAAGTGTGAAGTGTAGTTCCTTATTGATCACATGAACGTCTCCTGAGCG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS-3UTR GCA 90 bp | TGCCCACGGCAAGATTTCTCATTTCCAAGTTCTACAGTCTCCGCTCAGGAGACGAAGATGATGGAAGGTTaGTTTCACTCCTCTCCTCAT | + |
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Preference number: 4 (lower is better) Translates to: CPRQDFSFPSSTVSAQETKMMEG*FHSSPH Trigger: ATGAGGAGAGGAGTGAAAGCAACCTTCCATCATCTT...CGTCTCCTGAGCGGAGACTGTAGAACTTGGAAATGAGAAATCTTGCCGTGGGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS-3UTR CCA 90 bp | AGTCTCTGCAGACTACACAGCTCAAGCCAGCTGAATGCTCGCTCTCGCTCTCGCAAAAATATGCTTGCATaGCAGGATTCTGATAACATC | + |
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Preference number: 4 (lower is better) Translates to: SLCRLHSSSQLNARSRSRKNMLA*QDSDNI Trigger: GATGTTATCAGAATCCTGCCATGCAAGCATATTTTT...GCGAGAGCGAGAGCGAGCATTCAGCTGGCTTGAGCTGTGTAGTCTGCAGAGACT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS-3UTR CCA 90 bp | CTAAGCACTATACAGAATTTAGACAACAGTCTTCAAAGACTTTCACCAGCGAGAAACAGAAACCCTTCCTaGGGCAGCTTCTGGGGTGGG | + |
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Preference number: 4 (lower is better) Translates to: LSTIQNLDNSLQRLSPARNRNPS*GSFWGG Trigger: CCCACCCCAGAAGCTGCCCCAGGAAGGGTTTCTGTT...TCTCGCTGGTGAAAGTCTTTGAAGACTGTTGTCTAAATTCTGTATAGTGCTTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS-3UTR CCA 90 bp | CACAAGTTTAGAATCAACAACAATGGACTCCTTGCTCTTCAAAGTATGTATCTAAAGACAGGGGCGGTGTaGCCCAGACTCGCTCGAGGA | + |
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Preference number: 4 (lower is better) Translates to: HKFRINNNGLLALQSMYLKTGAV*PRLARG Trigger: TCCTCGAGCGAGTCTGGGCCACACCGCCCCTGTCTT...TAGATACATACTTTGAAGAGCAAGGAGTCCATTGTTGTTGATTCTAAACTTGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS-3UTR GCA 90 bp | CTCGAGGAAGATGATGGAAGGTTGCTTTCACTCCTCTCCTCATCTTGGGATGTCGTTTTCAATACACACTaGACAATTCTCAGCATCGAC | + |
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Preference number: 4 (lower is better) Translates to: LEEDDGRLLSLLSSSWDVVFNTH*TILSID Trigger: GTCGATGCTGAGAATTGTGCAGTGTGTATTGAAAAC...GACATCCCAAGATGAGGAGAGGAGTGAAAGCAACCTTCCATCATCTTCCTCGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000195136.2 |
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| CDS-3UTR TCA 90 bp | TCAGAAACAACCCCTCCACATACATCTGTGACAGGTGATACAACAAAACTTATGATTGGACACGTTCGGTaGTCCAAAAGCCATGGGTCA | + |
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Preference number: 4 (lower is better) Translates to: SETTPPHTSVTGDTTKLMIGHVR*SKSHGS Trigger: TGACCCATGGCTTTTGGATCACCGAACGTGTCCAAT...CATAAGTTTTGTTGTATCACCTGTCACAGATGTATGTGGAGGGGTTGTTTCTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS-3UTR GCA 90 bp | CAGTTTGCACCACTGCCCACGGCAAGATTTCTCATTTCCAAGTTCTACAGTCTCGTTTTCAATACACACTaGACAATTCTCAGCATCGAC | + |
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Preference number: 4 (lower is better) Translates to: QFAPLPTARFLISKFYSLVFNTH*TILSID Trigger: GTCGATGCTGAGAATTGTGCAGTGTGTATTGAAAAC...GAGACTGTAGAACTTGGAAATGAGAAATCTTGCCGTGGGCAGTGGTGCAAACTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS-3UTR CCA 90 bp | TTGCACCACTGCCCACGGCAAGATTTCTCATTTCCAAGTTCTACAGTCTCCGCTAATTTCCCGTCCTTTTaGGTAGCTAATCATAATGAC | + |
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Preference number: 4 (lower is better) Translates to: LHHCPRQDFSFPSSTVSANFPSF*VANHND Trigger: GTCATTATGATTAGCTACCCAAAAGGACGGGAAATT...AGCGGAGACTGTAGAACTTGGAAATGAGAAATCTTGCCGTGGGCAGTGGTGCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS-3UTR CCA 90 bp | CTCGAGGAAGATGATGGAAGGTTGCTTTCACTCCTCTCCTCATCTTGGGATGTCTATCCGCATTTTTACTaGAATTCCTTTTTGCACCAG | + |
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Preference number: 4 (lower is better) Translates to: LEEDDGRLLSLLSSSWDVYPHFY*NSFLHQ Trigger: CTGGTGCAAAAAGGAATTCCAGTAAAAATGCGGATA...GACATCCCAAGATGAGGAGAGGAGTGAAAGCAACCTTCCATCATCTTCCTCGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000195136.2 |
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| CDS-3UTR GCA 90 bp | ATACAGAATTTAGACAACAGTCTTCAAAGACTTTCACCAGCGAGAACATTAAACGGTCCACGTATTCGATaGTCACCATGGCCGAGTACC | + |
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Preference number: 4 (lower is better) Translates to: IQNLDNSLQRLSPARTLNGPRIR*SPWPST Trigger: GGTACTCGGCCATGGTGAGCATCGAATACGTGGACC...GTTTAATGTTCTCGCTGGTGAAAGTCTTTGAAGACTGTTGTCTAAATTCTGTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS-3UTR CCA 90 bp | CGCTCAGGAGACGTTCATGTGATCAATAAGGAACTACACTTCACACTTCAACTCTATCCGCATTTTTACTaGAATTCCTTTTTGCACCAG | + |
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Preference number: 4 (lower is better) Translates to: RSGDVHVINKELHFTLQLYPHFY*NSFLHQ Trigger: CTGGTGCAAAAAGGAATTCCAGTAAAAATGCGGATA...GAGTTGAAGTGTGAAGTGTAGTTCCTTATTGATCACATGAACGTCTCCTGAGCG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS-3UTR CCA 90 bp | ATACAGAATTTAGACAACAGTCTTCAAAGACTTTCACCAGCGAGAACATTAAACGTGATCCAAAAGCCATaGGTCAATGCATATTCTATG | + |
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Preference number: 4 (lower is better) Translates to: IQNLDNSLQRLSPARTLNVIQKP*VNAYSM Trigger: CATAGAATATGCATTGACCCATGGCTTTTGGATCAC...GTTTAATGTTCTCGCTGGTGAAAGTCTTTGAAGACTGTTGTCTAAATTCTGTAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS TCA 90 bp | CCACGGCCGAGGCGTTCCTCCGCGCCGCCGCCAGCACCTTGTCCTTaGAGGTGCAGCCGCCTCGCGCCACCAGCGCCACCCAGGGCGCGT | + |
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Preference number: 5 (lower is better) Translates to: PRPRRSSAPPPAPCP*RCSRLAPPAPPRAR Trigger: ACGCGCCCTGGGTGGCGCTGGTGGCGCGAGGCGGCTGCACCTTCAAGGACAAGGTGCTGGCGGCGGCGCGGAGGAACGCCTCGGCCGTGG 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS GCA 90 bp | ACACGCTCCACACCGTCAGGTTCGACTGCGGGTCCACGTATTCGATaGTCACCATGGCCGAGTACCACTCGAGCGCCCCGCCGCCCACCC | + |
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Preference number: 5 (lower is better) Translates to: TRSTPSGSTAGPRIR*SPWPSTTRAPRRPP Trigger: GGGTGGGCGGCGGGGCGCTCGAGTGGTACTCGGCCATGGTGAGCATCGAATACGTGGACCCGCAGTCGAACCTGACGGTGTGGAGCGTGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS CCA 90 bp | ACACCGTCAGGTTCGACTGCGGGTCCACGTATTCGATGCTCACCATaGCCGAGTACCACTCGAGCGCCCCGCCGCCCACCCCGGGAGTAC | + |
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Preference number: 5 (lower is better) Translates to: TPSGSTAGPRIRCSP*PSTTRAPRRPPREY Trigger: GTACTCCCGGGGTGGGCGGCGGGGCGCTCGAGTGGTACTCGGCCATGGTGAGCATCGAATACGTGGACCCGCAGTCGAACCTGACGGTGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS GCA 90 bp | CCGAAGCGGCCGCTCTCCGACACGCTCCACACCGTCAGGTTCGACTaGGGGTCCACGTATTCGATGCTCACCATGGCCGAGTACCACTCG | + |
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Preference number: 5 (lower is better) Translates to: PKRPLSDTLHTVRFD*GSTYSMLTMAEYHS Trigger: CGAGTGGTACTCGGCCATGGTGAGCATCGAATACGTGGACCCGCAGTCGAACCTGACGGTGTGGAGCGTGTCGGAGAGCGGCCGCTTCGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS GCA 90 bp | TGTTTCCTGTTCCCGCGTGAGACATGGGCTCGGTGGCGTTCCCGTTaGTCTCCAGGTTGTAGACCACCACGGCCGAGGCGTTCCTCCGCG | + |
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Preference number: 5 (lower is better) Translates to: CFLFPRETWARWRSR*SPGCRPPRPRRSSA Trigger: CGCGGAGGAACGCCTCGGCCGTGGTGGTCTACAACCTGGAGAGCAACGGGAACGCCACCGAGCCCATGTCTCACGCGGGAACAGGAAACA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS-3UTR CAA 90 bp | AGTCTCTGCAGACTACACAGCTCAAGCCAGCTGAATGCTCGCTCTCGCTCTCGCGCCAGCACCTTGTCCTaGAAGGTGCAGCCGCCTCGC | + |
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Preference number: 5 (lower is better) Translates to: SLCRLHSSSQLNARSRSRASTLS*KVQPPR Trigger: GCGAGGCGGCTGCACCTTCAAGGACAAGGTGCTGGC...GCGAGAGCGAGAGCGAGCATTCAGCTGGCTTGAGCTGTGTAGTCTGCAGAGACT 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS-3UTR CAA 90 bp | CTGCCCACGGCAAGATTTCTCATTTCCAAGTTCTACAGTCTCCGCTCAGGAGACGCCGCCGCCAGCACCTaGTCCTTGAAGGTGCAGCCG | + |
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Preference number: 5 (lower is better) Translates to: LPTARFLISKFYSLRSGDAAAST*SLKVQP Trigger: CGGCTGCACCTTCAAGGACAAGGTGCTGGCGGCGGC...GTCTCCTGAGCGGAGACTGTAGAACTTGGAAATGAGAAATCTTGCCGTGGGCAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS GCA 90 bp | AGGGGCGGTGTGGCCCAGACTCGCTCGAGGAAGATGATGGAAGGTTaGTTTCACTCCTCTCCTCATCTTGGGATGTCACACTCAGATTCC | + |
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Preference number: 5 (lower is better) Translates to: RGGVAQTRSRKMMEG*FHSSPHLGMSHSDS Trigger: GGAATCTGAGTGTGACATCCCAAGATGAGGAGAGGAGTGAAAGCAACCTTCCATCATCTTCCTCGAGCGAGTCTGGGCCACACCGCCCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS-3UTR CAA 90 bp | GCTCCTAGTAATGCTGTGTCCTCCCCTGCATCTTCTTTAAGACAGGGGCGGTGTATCCTCAGGGTCCCCTaGCATGGCAGGATTCTGATA | + |
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Preference number: 5 (lower is better) Translates to: APSNAVSSPASSLRQGRCILRVP*HGRILI Trigger: TATCAGAATCCTGCCATGCAAGGGGACCCTGAGGAT...ACACCGCCCCTGTCTTAAAGAAGATGCAGGGGAGGACACAGCATTACTAGGAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000195136.2 |
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| CDS CCA 90 bp | CTCGAGGAAGATGATGGAAGGTTGCTTTCACTCCTCTCCTCATCTTaGGATGTCACACTCAGATTCCCAACAGAAACCCTTCCTGGGGCA | + |
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Preference number: 5 (lower is better) Translates to: LEEDDGRLLSLLSSS*DVTLRFPTETLPGA Trigger: TGCCCCAGGAAGGGTTTCTGTTGGGAATCTGAGTGTGACATCCCAAGATGAGGAGAGGAGTGAAAGCAACCTTCCATCATCTTCCTCGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS-3UTR CAA 90 bp | CTGCCCACGGCAAGATTTCTCATTTCCAAGTTCTACAGTCTCCGCTCAGGAGACGAAGATGATGGAAGGTaGCTTTCACTCCTCTCCTCA | + |
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Preference number: 5 (lower is better) Translates to: LPTARFLISKFYSLRSGDEDDGR*LSLLSS Trigger: TGAGGAGAGGAGTGAAAGCAACCTTCCATCATCTTC...GTCTCCTGAGCGGAGACTGTAGAACTTGGAAATGAGAAATCTTGCCGTGGGCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS-3UTR CAA 90 bp | CACAAGTTTAGAATCAACAACAATGGACTCCTTGCTCTTCAAAGTATGTATCTACATCAAGTTTACACATaGGACACGTTCGGTGATCCA | + |
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Preference number: 5 (lower is better) Translates to: HKFRINNNGLLALQSMYLHQVYT*DTFGDP Trigger: TGGATCACCGAACGTGTCCAATGTGTAAACTTGATG...TAGATACATACTTTGAAGAGCAAGGAGTCCATTGTTGTTGATTCTAAACTTGTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS CAA 90 bp | TTGAAGGTGCAGCCGCCTCGCGCCACCAGCGCCACCCAGGGCGCGTaGCCGAGGGCGCCGGGCGCCACGAAGCGCGTGTCGGGCGCGCAG | + |
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Preference number: 6 (lower is better) Translates to: LKVQPPRATSATQGA*PRAPGATKRVSGAQ Trigger: CTGCGCGCCCGACACGCGCTTCGTGGCGCCCGGCGCCCTCGGCAACGCGCCCTGGGTGGCGCTGGTGGCGCGAGGCGGCTGCACCTTCAA 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS TCA 72 bp | AGGCGTTCCTCCGCGCCGCCGCCAGCACCTTGTCCTTaGAGGTGCAGCCGCCTCGCGCCACCAGCGCCACCC | + |
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Preference number: 6 (lower is better) Translates to: RRSSAPPPAPCP*RCSRLAPPAPP Trigger: GGGTGGCGCTGGTGGCGCGAGGCGGCTGCACCTTCAAGGACAAGGTGCTGGCGGCGGCGCGGAGGAACGCCT 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS CAA 72 bp | ACGGCCGAGGCGTTCCTCCGCGCCGCCGCCAGCACCTaGTCCTTGAAGGTGCAGCCGCCTCGCGCCACCAGC | + |
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Preference number: 6 (lower is better) Translates to: TAEAFLRAAAST*SLKVQPPRATS Trigger: GCTGGTGGCGCGAGGCGGCTGCACCTTCAAGGACAAGGTGCTGGCGGCGGCGCGGAGGAACGCCTCGGCCGT 74% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS CCA 72 bp | GGTTCGACTGCGGGTCCACGTATTCGATGCTCACCATaGCCGAGTACCACTCGAGCGCCCCGCCGCCCACCC | + |
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Preference number: 6 (lower is better) Translates to: GSTAGPRIRCSP*PSTTRAPRRPP Trigger: GGGTGGGCGGCGGGGCGCTCGAGTGGTACTCGGCCATGGTGAGCATCGAATACGTGGACCCGCAGTCGAACC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS GCA 72 bp | TTCCCGCGTGAGACATGGGCTCGGTGGCGTTCCCGTTaGTCTCCAGGTTGTAGACCACCACGGCCGAGGCGT | + |
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Preference number: 6 (lower is better) Translates to: FPRETWARWRSR*SPGCRPPRPRR Trigger: ACGCCTCGGCCGTGGTGGTCTACAACCTGGAGAGCAACGGGAACGCCACCGAGCCCATGTCTCACGCGGGAA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS GCA 72 bp | ACACCGTCAGGTTCGACTGCGGGTCCACGTATTCGATaGTCACCATGGCCGAGTACCACTCGAGCGCCCCGC | + |
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Preference number: 6 (lower is better) Translates to: TPSGSTAGPRIR*SPWPSTTRAPR Trigger: GCGGGGCGCTCGAGTGGTACTCGGCCATGGTGAGCATCGAATACGTGGACCCGCAGTCGAACCTGACGGTGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS GCA 72 bp | CCGCTCTCCGACACGCTCCACACCGTCAGGTTCGACTaGGGGTCCACGTATTCGATGCTCACCATGGCCGAG | + |
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Preference number: 6 (lower is better) Translates to: PLSDTLHTVRFD*GSTYSMLTMAE Trigger: CTCGGCCATGGTGAGCATCGAATACGTGGACCCGCAGTCGAACCTGACGGTGTGGAGCGTGTCGGAGAGCGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS CCA 72 bp | CTATGTTTCCTGTTCCCGCGTGAGACATGGGCTCGGTaGCGTTCCCGTTGCTCTCCAGGTTGTAGACCACCA | + |
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Preference number: 6 (lower is better) Translates to: LCFLFPRETWAR*RSRCSPGCRPP Trigger: TGGTGGTCTACAACCTGGAGAGCAACGGGAACGCCACCGAGCCCATGTCTCACGCGGGAACAGGAAACATAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS CAA 90 bp | CAGGGGCGGTGTGGCCCAGACTCGCTCGAGGAAGATGATGGAAGGTaGCTTTCACTCCTCTCCTCATCTTGGGATGTCACACTCAGATTC | + |
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Preference number: 6 (lower is better) Translates to: QGRCGPDSLEEDDGR*LSLLSSSWDVTLRF Trigger: GAATCTGAGTGTGACATCCCAAGATGAGGAGAGGAGTGAAAGCAACCTTCCATCATCTTCCTCGAGCGAGTCTGGGCCACACCGCCCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS TCA 72 bp | CTAATCATAATGACGACTATGTTTCCTGTTCCCGCGTaGGACATGGGCTCGGTGGCGTTCCCGTTGCTCTCC | + |
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Preference number: 6 (lower is better) Translates to: LIIMTTMFPVPA*DMGSVAFPLLS Trigger: GGAGAGCAACGGGAACGCCACCGAGCCCATGTCTCACGCGGGAACAGGAAACATAGTCGTCATTATGATTAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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| CDS CCA 72 bp | GATGATGGAAGGTTGCTTTCACTCCTCTCCTCATCTTaGGATGTCACACTCAGATTCCCAACAGAAACCCTT | + |
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Preference number: 6 (lower is better) Translates to: DDGRLLSLLSSS*DVTLRFPTETL Trigger: AAGGGTTTCTGTTGGGAATCTGAGTGTGACATCCCAAGATGAGGAGAGGAGTGAAAGCAACCTTCCATCATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062525.11 |
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