Pregenerated sensors for RNF148 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078179Ensembl transcript IDs: ENSMUST00000104979.2
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ATGATATGTAGCTTTATTTTCAAAGCACACCAACTTCATCTTCACTaGCAGGATAGAGGAACTAAGGGTCATGTTTGCTTTGGATGTACA | + |
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Preference number: 1 (lower is better) Translates to: MICSFIFKAHQLHLH*QDRGTKGHVCFGCT Trigger: TGTACATCCAAAGCAAACATGACCCTTAGTTCCTCTATCCTGCCAGTGAAGATGAAGTTGGTGTGCTTTGAAAATAAAGCTACATATCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| 3UTR CAA 90 bp | TTCATCTTCACTGGCAGGATAGAGGAACTAAGGGTCATGTTTGCTTaGGATGTACAGCACAGTGAGCAAATTCGTCTAATTTTAATCTGT | + |
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Preference number: 2 (lower is better) Translates to: FIFTGRIEELRVMFA*DVQHSEQIRLILIC Trigger: ACAGATTAAAATTAGACGAATTTGCTCACTGTGCTGTACATCCAAAGCAAACATGACCCTTAGTTCCTCTATCCTGCCAGTGAAGATGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| 3UTR CCA 72 bp | AGCTTTATTTTCAAAGCACACCAACTTCATCTTCACTaGCAGGATAGAGGAACTAAGGGTCATGTTTGCTTT | + |
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Preference number: 3 (lower is better) Translates to: SFIFKAHQLHLH*QDRGTKGHVCF Trigger: AAAGCAAACATGACCCTTAGTTCCTCTATCCTGCCAGTGAAGATGAAGTTGGTGTGCTTTGAAAATAAAGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS-3UTR TCA 90 bp | TTCACTGGCAGGATAGAGGAACTAAGGGTCATGTTTGCTTTGGATGTACAGCACAGCCTCCCCTTTCGATaGGGGCCAGCCAAGTGTCTG | + |
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Preference number: 4 (lower is better) Translates to: FTGRIEELRVMFALDVQHSLPFR*GPAKCL Trigger: CAGACACTTGGCTGGCCCTCATCGAAAGGGGAGGCT...GTGCTGTACATCCAAAGCAAACATGACCCTTAGTTCCTCTATCCTGCCAGTGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS-3UTR TCA 90 bp | TTCAAAGCACACCAACTTCATCTTCACTGGCAGGATAGAGGAACTAAGGGTCATTCTGATCGGGCCTGCTaGAGTTGGTCAGCGGACTGC | + |
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Preference number: 4 (lower is better) Translates to: FKAHQLHLHWQDRGTKGHSDRAC*SWSADC Trigger: GCAGTCCGCTGACCAACTTCAGCAGGCCCGATCAGA...ATGACCCTTAGTTCCTCTATCCTGCCAGTGAAGATGAAGTTGGTGTGCTTTGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS-3UTR GCA 90 bp | TTCACTGGCAGGATAGAGGAACTAAGGGTCATGTTTGCTTTGGATGTACAGCACGATGATCACCCCGTTTaGTCCCTTCTCCGCTGCCAG | + |
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Preference number: 4 (lower is better) Translates to: FTGRIEELRVMFALDVQHDDHPV*SLLRCQ Trigger: CTGGCAGCGGAGAAGGGAGCAAACGGGGTGATCATC...GTGCTGTACATCCAAAGCAAACATGACCCTTAGTTCCTCTATCCTGCCAGTGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS-3UTR CCA 90 bp | CACACCAACTTCATCTTCACTGGCAGGATAGAGGAACTAAGGGTCATGTTTGCTTCCTTATCTCCGTCCTaGAGCACTCGAAGTTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: HTNFIFTGRIEELRVMFASLSPS*STRSCS Trigger: GCTGCAACTTCGAGTGCTCCAGGACGGAGATAAGGA...AGCAAACATGACCCTTAGTTCCTCTATCCTGCCAGTGAAGATGAAGTTGGTGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS-3UTR GCA 90 bp | TCAAAGCACACCAACTTCATCTTCACTGGCAGGATAGAGGAACTAAGGGTCATGTGGAGCACTCGAAGTTaGAGCTGGCCAATAGCTTTC | + |
|
Preference number: 4 (lower is better) Translates to: SKHTNFIFTGRIEELRVMWSTRS*SWPIAF Trigger: GAAAGCTATTGGCCAGCTGCAACTTCGAGTGCTCCA...CATGACCCTTAGTTCCTCTATCCTGCCAGTGAAGATGAAGTTGGTGTGCTTTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS-3UTR CCA 90 bp | CACACCAACTTCATCTTCACTGGCAGGATAGAGGAACTAAGGGTCATGTTTGCTTTCCCTGGTGAGACATaGGAAACACCTTGTTGCCTG | + |
|
Preference number: 4 (lower is better) Translates to: HTNFIFTGRIEELRVMFAFPGET*ETPCCL Trigger: CAGGCAACAAGGTGTTTCCCATGTCTCACCAGGGAA...AGCAAACATGACCCTTAGTTCCTCTATCCTGCCAGTGAAGATGAAGTTGGTGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS-3UTR TCA 90 bp | CAACTTCATCTTCACTGGCAGGATAGAGGAACTAAGGGTCATGTTTGCTTTGGACTTTCCAGAGGAGAGTaGTTCCCAAACACTCCACTC | + |
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Preference number: 4 (lower is better) Translates to: QLHLHWQDRGTKGHVCFGLSRGE*FPNTPL Trigger: GAGTGGAGTGTTTGGGAATCACTCTCCTCTGGAAAG...TCCAAAGCAAACATGACCCTTAGTTCCTCTATCCTGCCAGTGAAGATGAAGTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS-3UTR TCA 90 bp | CATCTTCACTGGCAGGATAGAGGAACTAAGGGTCATGTTTGCTTTGGATGTACAGCCAGGTTGATTTTATaGGTGAAAGTGCAGCCTCCC | + |
|
Preference number: 4 (lower is better) Translates to: HLHWQDRGTKGHVCFGCTARLIL*VKVQPP Trigger: GGGAGGCTGCACTTTCACTCATAAAATCAACCTGGC...TGTACATCCAAAGCAAACATGACCCTTAGTTCCTCTATCCTGCCAGTGAAGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS-3UTR TCA 90 bp | GAGGAACTAAGGGTCATGTTTGCTTTGGATGTACAGCACAGTGAGCAAATTCGTTTCTCTGTTCCCTGGTaGGACATGGGAAACACCTTG | + |
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Preference number: 4 (lower is better) Translates to: EELRVMFALDVQHSEQIRFSVPW*DMGNTL Trigger: CAAGGTGTTTCCCATGTCTCACCAGGGAACAGAGAA...ACGAATTTGCTCACTGTGCTGTACATCCAAAGCAAACATGACCCTTAGTTCCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS-3UTR GCA 90 bp | AGGATAGAGGAACTAAGGGTCATGTTTGCTTTGGATGTACAGCACAGTGAGCAACTGAGCCACGGCATATaGATTCTCCCCACTTCAATG | + |
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Preference number: 4 (lower is better) Translates to: RIEELRVMFALDVQHSEQLSHGI*ILPTSM Trigger: CATTGAAGTGGGGAGAATGCATATGCCGTGGCTCAG...TTGCTCACTGTGCTGTACATCCAAAGCAAACATGACCCTTAGTTCCTCTATCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS-3UTR TCA 90 bp | ATCTTCACTGGCAGGATAGAGGAACTAAGGGTCATGTTTGCTTTGGATGTACAGAACAGACCTATGAACTaGAGGAGTAGGTCCAAGTGG | + |
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Preference number: 4 (lower is better) Translates to: IFTGRIEELRVMFALDVQNRPMN*RSRSKW Trigger: CCACTTGGACCTACTCCTTCAGTTCATAGGTCTGTT...CTGTACATCCAAAGCAAACATGACCCTTAGTTCCTCTATCCTGCCAGTGAAGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS-3UTR GCA 90 bp | CATCTTCACTGGCAGGATAGAGGAACTAAGGGTCATGTTTGCTTTGGATGTACATGCTCCCTTCTCCGCTaGCAGGTTGATTTTATGAGT | + |
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Preference number: 4 (lower is better) Translates to: HLHWQDRGTKGHVCFGCTCSLLR*QVDFMS Trigger: ACTCATAAAATCAACCTGGCAGCGGAGAAGGGAGCA...TGTACATCCAAAGCAAACATGACCCTTAGTTCCTCTATCCTGCCAGTGAAGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS-3UTR GCA 90 bp | AGGATAGAGGAACTAAGGGTCATGTTTGCTTTGGATGTACAGCACAGTGAGCAATCAGGATGTCACACTTaGACATGGGGCATGTCCTAT | + |
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Preference number: 4 (lower is better) Translates to: RIEELRVMFALDVQHSEQSGCHT*TWGMSY Trigger: ATAGGACATGCCCCATGTGCAAGTGTGACATCCTGA...TTGCTCACTGTGCTGTACATCCAAAGCAAACATGACCCTTAGTTCCTCTATCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS-3UTR CCA 90 bp | CACCAACTTCATCTTCACTGGCAGGATAGAGGAACTAAGGGTCATGTTTGCTTTTGTCACACTTGCACATaGGGCATGTCCTATGTGCTA | + |
|
Preference number: 4 (lower is better) Translates to: HQLHLHWQDRGTKGHVCFCHTCT*GMSYVL Trigger: TAGCACATAGGACATGCCCCATGTGCAAGTGTGACA...AAAGCAAACATGACCCTTAGTTCCTCTATCCTGCCAGTGAAGATGAAGTTGGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS-3UTR GCA 90 bp | AACTTCATCTTCACTGGCAGGATAGAGGAACTAAGGGTCATGTTTGCTTTGGATAGTTGGTCAGCGGACTaGAAGCATTCTGATTCCATC | + |
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Preference number: 4 (lower is better) Translates to: NFIFTGRIEELRVMFALDSWSAD*KHSDSI Trigger: GATGGAATCAGAATGCTTGCAGTCCGCTGACCAACT...ATCCAAAGCAAACATGACCCTTAGTTCCTCTATCCTGCCAGTGAAGATGAAGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS-3UTR GCA 90 bp | AGGATAGAGGAACTAAGGGTCATGTTTGCTTTGGATGTACAGCACAGTGAGCAATGGGAAACACCTTGTTaGCTGTACCCGGATAGTTAT | + |
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Preference number: 4 (lower is better) Translates to: RIEELRVMFALDVQHSEQWETPC*LYPDSY Trigger: ATAACTATCCGGGTACAGGCAACAAGGTGTTTCCCA...TTGCTCACTGTGCTGTACATCCAAAGCAAACATGACCCTTAGTTCCTCTATCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS-3UTR GCA 90 bp | TTCACTGGCAGGATAGAGGAACTAAGGGTCATGTTTGCTTTGGATGTACAGCACAAAGCCAGGGATCGATaGAAGTCTTGTGGAAGAAAT | + |
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Preference number: 4 (lower is better) Translates to: FTGRIEELRVMFALDVQHKARDR*KSCGRN Trigger: ATTTCTTCCACAAGACTTGCATCGATCCCTGGCTTT...GTGCTGTACATCCAAAGCAAACATGACCCTTAGTTCCTCTATCCTGCCAGTGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS-3UTR CCA 90 bp | AGGATAGAGGAACTAAGGGTCATGTTTGCTTTGGATGTACAGCACAGTGAGCAAACTCGAAGTTGCAGCTaGCCAATAGCTTTCTTCACA | + |
|
Preference number: 4 (lower is better) Translates to: RIEELRVMFALDVQHSEQTRSCS*PIAFFT Trigger: TGTGAAGAAAGCTATTGGCCAGCTGCAACTTCGAGT...TTGCTCACTGTGCTGTACATCCAAAGCAAACATGACCCTTAGTTCCTCTATCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS-3UTR TCA 90 bp | ACCAACTTCATCTTCACTGGCAGGATAGAGGAACTAAGGGTCATGTTTGCTTTGAATGAAACAGACCTATaGACTGAAGGAGTAGGTCCA | + |
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Preference number: 4 (lower is better) Translates to: TNFIFTGRIEELRVMFALNETDL*TEGVGP Trigger: TGGACCTACTCCTTCAGTTCATAGGTCTGTTTCATT...CAAAGCAAACATGACCCTTAGTTCCTCTATCCTGCCAGTGAAGATGAAGTTGGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS-3UTR GCA 90 bp | ATCTTCACTGGCAGGATAGAGGAACTAAGGGTCATGTTTGCTTTGGATGTACAGATGAGCAGTCCATATTaGTTTTCCTTTGGAGTCACG | + |
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Preference number: 4 (lower is better) Translates to: IFTGRIEELRVMFALDVQMSSPY*FSFGVT Trigger: CGTGACTCCAAAGGAAAAGCAATATGGACTGCTCAT...CTGTACATCCAAAGCAAACATGACCCTTAGTTCCTCTATCCTGCCAGTGAAGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS-3UTR GCA 90 bp | CAGCACAGTGAGCAAATTCGTCTAATTTTAATCTGTGGAGAGATCTCTGGGCTTGTTGCCAATCATCACTaGAACTATATTCTCTGTTCC | + |
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Preference number: 4 (lower is better) Translates to: QHSEQIRLILICGEISGLVANHH*NYILCS Trigger: GGAACAGAGAATATAGTTGCAGTGATGATTGGCAAC...AAGCCCAGAGATCTCTCCACAGATTAAAATTAGACGAATTTGCTCACTGTGCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS GCA 90 bp | TGCAGCTGGCCAATAGCTTTCTTCACATCGGCCTTTAGCTGCCTTTaGCTCCTGGTAGAAGAATTGGACACTCGGGGTCTCCAGGCACAG | + |
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Preference number: 5 (lower is better) Translates to: CSWPIAFFTSAFSCL*LLVEELDTRGLQAQ Trigger: CTGTGCCTGGAGACCCCGAGTGTCCAATTCTTCTACCAGGAGGCAAAGGCAGCTAAAGGCCGATGTGAAGAAAGCTATTGGCCAGCTGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS TCA 90 bp | CCTTCAGGAAGTACCACGGCACCAGACACCCTTTCCAGAGGAGAGTaGTTCCCAAACACTCCACTCTCTCCTAGCTCTGATATGATCCGG | + |
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Preference number: 5 (lower is better) Translates to: PSGSTTAPDTLSRGE*FPNTPLSPSSDMIR Trigger: CCGGATCATATCAGAGCTAGGAGAGAGTGGAGTGTTTGGGAATCACTCTCCTCTGGAAAGGGTGTCTGGTGCCGTGGTACTTCCTGAAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS GCA 90 bp | CGAAGTTGCAGCTGGCCAATAGCTTTCTTCACATCGGCCTTTAGCTaGCTTTGCCTCCTGGTAGAAGAATTGGACACTCGGGGTCTCCAG | + |
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Preference number: 5 (lower is better) Translates to: RSCSWPIAFFTSAFS*LCLLVEELDTRGLQ Trigger: CTGGAGACCCCGAGTGTCCAATTCTTCTACCAGGAGGCAAAGGCAGCTAAAGGCCGATGTGAAGAAAGCTATTGGCCAGCTGCAACTTCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS CCA 90 bp | ACCACGCAGCTGTCTTCATTCGGGTCTAACTCCTTATCTCCGTCCTaGAGCACTCGAAGTTGCAGCTGGCCAATAGCTTTCTTCACATCG | + |
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Preference number: 5 (lower is better) Translates to: TTQLSSFGSNSLSPS*STRSCSWPIAFFTS Trigger: CGATGTGAAGAAAGCTATTGGCCAGCTGCAACTTCGAGTGCTCCAGGACGGAGATAAGGAGTTAGACCCGAATGAAGACAGCTGCGTGGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS GCA 90 bp | TCATTCGGGTCTAACTCCTTATCTCCGTCCTGGAGCACTCGAAGTTaGAGCTGGCCAATAGCTTTCTTCACATCGGCCTTTAGCTGCCTT | + |
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Preference number: 5 (lower is better) Translates to: SFGSNSLSPSWSTRS*SWPIAFFTSAFSCL Trigger: AAGGCAGCTAAAGGCCGATGTGAAGAAAGCTATTGGCCAGCTGCAACTTCGAGTGCTCCAGGACGGAGATAAGGAGTTAGACCCGAATGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS-3UTR CAA 90 bp | CACTGGCAGGATAGAGGAACTAAGGGTCATGTTTGCTTTGGATGTACAGCACAGAAGAGCTCCATGCCCTaGAGGTTGCCAATCATCACT | + |
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Preference number: 5 (lower is better) Translates to: HWQDRGTKGHVCFGCTAQKSSMP*RLPIIT Trigger: AGTGATGATTGGCAACCTCAAGGGCATGGAGCTCTT...CTGTGCTGTACATCCAAAGCAAACATGACCCTTAGTTCCTCTATCCTGCCAGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS GCA 90 bp | GATCAAGTGCAAGAGCTCCATGCCCTTGAGGTTGCCAATCATCACTaGAACTATATTCTCTGTTCCCTGGTGAGACATGGGAAACACCTT | + |
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Preference number: 5 (lower is better) Translates to: DQVQELHALEVANHH*NYILCSLVRHGKHL Trigger: AAGGTGTTTCCCATGTCTCACCAGGGAACAGAGAATATAGTTGCAGTGATGATTGGCAACCTCAAGGGCATGGAGCTCTTGCACTTGATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS-3UTR CAA 90 bp | CACACCAACTTCATCTTCACTGGCAGGATAGAGGAACTAAGGGTCATGTTTGCTCGTCACATAGACACCTaGCTGGATCAAGTGCAAGAG | + |
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Preference number: 5 (lower is better) Translates to: HTNFIFTGRIEELRVMFARHIDT*LDQVQE Trigger: CTCTTGCACTTGATCCAGCAAGGTGTCTATGTGACG...AGCAAACATGACCCTTAGTTCCTCTATCCTGCCAGTGAAGATGAAGTTGGTGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS-3UTR CAA 90 bp | ACCAACTTCATCTTCACTGGCAGGATAGAGGAACTAAGGGTCATGTTTGCTTTGCTGGAGCACTCGAAGTaGCAGCTGGCCAATAGCTTT | + |
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Preference number: 5 (lower is better) Translates to: TNFIFTGRIEELRVMFALLEHSK*QLANSF Trigger: AAAGCTATTGGCCAGCTGCAACTTCGAGTGCTCCAG...CAAAGCAAACATGACCCTTAGTTCCTCTATCCTGCCAGTGAAGATGAAGTTGGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS TCA 90 bp | AGCTCTGATATGATCCGGTTTCCCACCTGGAATGTAATATTCAGATaGGCAGTCCATATTGCTTTTCCTTTGGAGTCACGGAGGCTAAGC | + |
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Preference number: 5 (lower is better) Translates to: SSDMIRFPTWNVIFR*AVHIAFPLESRRLS Trigger: GCTTAGCCTCCGTGACTCCAAAGGAAAAGCAATATGGACTGCTCATCTGAATATTACATTCCAGGTGGGAAACCGGATCATATCAGAGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS-3UTR CAA 90 bp | CACCAACTTCATCTTCACTGGCAGGATAGAGGAACTAAGGGTCATGTTTGCTTTGGATCGATGCAAGTCTaGTGGAAGAAATGTTTGCAA | + |
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Preference number: 5 (lower is better) Translates to: HQLHLHWQDRGTKGHVCFGSMQV*WKKCLQ Trigger: TTGCAAACATTTCTTCCACAAGACTTGCATCGATCC...AAAGCAAACATGACCCTTAGTTCCTCTATCCTGCCAGTGAAGATGAAGTTGGTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS TCA 90 bp | AGTAGGAAGACGCTAAGTCTCAACAGCCAAAATGAAACAGACCTATaGACTGAAGGAGTAGGTCCAAGTGGGTTCATTTCTCCATTAACT | + |
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Preference number: 5 (lower is better) Translates to: SRKTLSLNSQNETDL*TEGVGPSGFISPLT Trigger: AGTTAATGGAGAAATGAACCCACTTGGACCTACTCCTTCAGTTCATAGGTCTGTTTCATTTTGGCTGTTGAGACTTAGCGTCTTCCTACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS-3UTR CAA 90 bp | TGTAGCTTTATTTTCAAAGCACACCAACTTCATCTTCACTGGCAGGATAGAGGAGATGAGCAGTCCATATaGCTTTTCCTTTGGAGTCAC | + |
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Preference number: 5 (lower is better) Translates to: CSFIFKAHQLHLHWQDRGDEQSI*LFLWSH Trigger: GTGACTCCAAAGGAAAAGCAATATGGACTGCTCATC...TCCTCTATCCTGCCAGTGAAGATGAAGTTGGTGTGCTTTGAAAATAAAGCTACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS GCA 90 bp | GTGCTAAAAGCCAGGGATCGATGCAAGTCTTGTGGAAGAAATGTTTaGAAGTTAAAATACGTATTACATCTTGGGCTTTGTACATGTCAA | + |
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Preference number: 5 (lower is better) Translates to: VLKARDRCKSCGRNV*KLKYVLHLGLCTCQ Trigger: TTGACATGTACAAAGCCCAAGATGTAATACGTATTTTAACTTGCAAACATTTCTTCCACAAGACTTGCATCGATCCCTGGCTTTTAGCAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS TCA 72 bp | CCTCCCCTTTCGATGAGGGCCAGCCAAGTGTCTGTCTaGTCGGGCCTGCTGAAGTTGGTCAGCGGACTGCAA | + |
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Preference number: 6 (lower is better) Translates to: PPLSMRASQVSV*SGLLKLVSGLQ Trigger: TTGCAGTCCGCTGACCAACTTCAGCAGGCCCGATCAGACAGACACTTGGCTGGCCCTCATCGAAAGGGGAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS TCA 72 bp | AGTACCACGGCACCAGACACCCTTTCCAGAGGAGAGTaGTTCCCAAACACTCCACTCTCTCCTAGCTCTGAT | + |
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Preference number: 6 (lower is better) Translates to: STTAPDTLSRGE*FPNTPLSPSSD Trigger: ATCAGAGCTAGGAGAGAGTGGAGTGTTTGGGAATCACTCTCCTCTGGAAAGGGTGTCTGGTGCCGTGGTACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS CAA 72 bp | TCGGCCTTTAGCTGCCTTTGCCTCCTGGTAGAAGAATaGGACACTCGGGGTCTCCAGGCACAGTATAGGAAA | + |
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Preference number: 6 (lower is better) Translates to: SAFSCLCLLVEE*DTRGLQAQYRK Trigger: TTTCCTATACTGTGCCTGGAGACCCCGAGTGTCCAATTCTTCTACCAGGAGGCAAAGGCAGCTAAAGGCCGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS GCA 72 bp | AGCTGGCCAATAGCTTTCTTCACATCGGCCTTTAGCTaGCTTTGCCTCCTGGTAGAAGAATTGGACACTCGG | + |
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Preference number: 6 (lower is better) Translates to: SWPIAFFTSAFS*LCLLVEELDTR Trigger: CCGAGTGTCCAATTCTTCTACCAGGAGGCAAAGGCAGCTAAAGGCCGATGTGAAGAAAGCTATTGGCCAGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS CCA 72 bp | CTGTCTTCATTCGGGTCTAACTCCTTATCTCCGTCCTaGAGCACTCGAAGTTGCAGCTGGCCAATAGCTTTC | + |
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Preference number: 6 (lower is better) Translates to: LSSFGSNSLSPS*STRSCSWPIAF Trigger: GAAAGCTATTGGCCAGCTGCAACTTCGAGTGCTCCAGGACGGAGATAAGGAGTTAGACCCGAATGAAGACAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS GCA 72 bp | CAAGAGCTCCATGCCCTTGAGGTTGCCAATCATCACTaGAACTATATTCTCTGTTCCCTGGTGAGACATGGG | + |
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Preference number: 6 (lower is better) Translates to: QELHALEVANHH*NYILCSLVRHG Trigger: CCCATGTCTCACCAGGGAACAGAGAATATAGTTGCAGTGATGATTGGCAACCTCAAGGGCATGGAGCTCTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS GCA 72 bp | TCTAACTCCTTATCTCCGTCCTGGAGCACTCGAAGTTaGAGCTGGCCAATAGCTTTCTTCACATCGGCCTTT | + |
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Preference number: 6 (lower is better) Translates to: SNSLSPSWSTRS*SWPIAFFTSAF Trigger: AAAGGCCGATGTGAAGAAAGCTATTGGCCAGCTGCAACTTCGAGTGCTCCAGGACGGAGATAAGGAGTTAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS CAA 72 bp | TCTCCCCACTTCAATGATGATCGTCACATAGACACCTaGCTGGATCAAGTGCAAGAGCTCCATGCCCTTGAG | + |
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Preference number: 6 (lower is better) Translates to: SPHFNDDRHIDT*LDQVQELHALE Trigger: CTCAAGGGCATGGAGCTCTTGCACTTGATCCAGCAAGGTGTCTATGTGACGATCATCATTGAAGTGGGGAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS CAA 72 bp | TGCTGGATCAAGTGCAAGAGCTCCATGCCCTTGAGGTaGCCAATCATCACTGCAACTATATTCTCTGTTCCC | + |
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Preference number: 6 (lower is better) Translates to: CWIKCKSSMPLR*PIITATIFSVP Trigger: GGGAACAGAGAATATAGTTGCAGTGATGATTGGCAACCTCAAGGGCATGGAGCTCTTGCACTTGATCCAGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS CAA 90 bp | CATATGCATTCTCCCCACTTCAATGATGATCGTCACATAGACACCTaGCTGGATCAAGTGCAAGAGCTCCATGCCCTTGAGGTTGCCAAT | + |
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Preference number: 6 (lower is better) Translates to: HMHSPHFNDDRHIDT*LDQVQELHALEVAN Trigger: ATTGGCAACCTCAAGGGCATGGAGCTCTTGCACTTGATCCAGCAAGGTGTCTATGTGACGATCATCATTGAAGTGGGGAGAATGCATATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS CAA 72 bp | ACACCTTGCTGGATCAAGTGCAAGAGCTCCATGCCCTaGAGGTTGCCAATCATCACTGCAACTATATTCTCT | + |
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Preference number: 6 (lower is better) Translates to: TPCWIKCKSSMP*RLPIITATIFS Trigger: AGAGAATATAGTTGCAGTGATGATTGGCAACCTCAAGGGCATGGAGCTCTTGCACTTGATCCAGCAAGGTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS CCA 72 bp | TCACTGCAACTATATTCTCTGTTCCCTGGTGAGACATaGGAAACACCTTGTTGCCTGTACCCGGATAGTTAT | + |
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Preference number: 6 (lower is better) Translates to: SLQLYSLFPGET*ETPCCLYPDSY Trigger: ATAACTATCCGGGTACAGGCAACAAGGTGTTTCCCATGTCTCACCAGGGAACAGAGAATATAGTTGCAGTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS TCA 72 bp | ACGCTAAGTCTCAACAGCCAAAATGAAACAGACCTATaGACTGAAGGAGTAGGTCCAAGTGGGTTCATTTCT | + |
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Preference number: 6 (lower is better) Translates to: TLSLNSQNETDL*TEGVGPSGFIS Trigger: AGAAATGAACCCACTTGGACCTACTCCTTCAGTTCATAGGTCTGTTTCATTTTGGCTGTTGAGACTTAGCGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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| CDS CAA 90 bp | TGTGCTAAAAGCCAGGGATCGATGCAAGTCTTGTGGAAGAAATGTTaGCAAGTTAAAATACGTATTACATCTTGGGCTTTGTACATGTCA | + |
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Preference number: 6 (lower is better) Translates to: CAKSQGSMQVLWKKC*QVKIRITSWALYMS Trigger: TGACATGTACAAAGCCCAAGATGTAATACGTATTTTAACTTGCAAACATTTCTTCCACAAGACTTGCATCGATCCCTGGCTTTTAGCACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000104979.2 |
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