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Pregenerated sensors for RNF138RT1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000083695

Ensembl transcript IDs: ENSMUST00000059320.4

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp CACGACCTCGGTGGCTGCTGTTGCAATGATCCAGCAAACGTTGCCTaGTCATGGTTACTTCTTCACACAGAGGACAATCGAAGGTGGGCT +
Preference number: 5 (lower is better)
Translates to: HDLGGCCCNDPANVA*SWLLLHTEDNRRWA
Trigger: AGCCCACCTTCGATTGTCCTCTGTGTGAAGAAGTAACCATGAGCAGGCAACGTTTGCTGGATCATTGCAACAGCAGCCACCGAGGTCGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059320.4
CDS CCA 90 bp CTCGGTGGCTGCTGTTGCAATGATCCAGCAAACGTTGCCTGCTCATaGTTACTTCTTCACACAGAGGACAATCGAAGGTGGGCTCATCAG +
Preference number: 5 (lower is better)
Translates to: LGGCCCNDPANVACS*LLLHTEDNRRWAHQ
Trigger: CTGATGAGCCCACCTTCGATTGTCCTCTGTGTGAAGAAGTAACCATGAGCAGGCAACGTTTGCTGGATCATTGCAACAGCAGCCACCGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059320.4
CDS CCA 90 bp GCCGGTGCCTCGTTGTTACTGTTGCCCACGGAGTTTGGAGACTGTTaGAAGCTTGAAACAGATGTAGAAACTCCAAATTCATCCTGGTAC +
Preference number: 5 (lower is better)
Translates to: AGASLLLLPTEFGDC*KLETDVETPNSSWY
Trigger: GTACCAGGATGAATTTGGAGTTTCTACATCTGTTTCAAGCTTCCAACAGTCTCCAAACTCCGTGGGCAACAGTAACAACGAGGCACCGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059320.4
CDS CCA 90 bp GTTGCCTGCTCATGGTTACTTCTTCACACAGAGGACAATCGAAGGTaGGCTCATCAGGTGGGCTTGCGTTCTCTTCCTCTTCTTGTAAAA +
Preference number: 5 (lower is better)
Translates to: VACSWLLLHTEDNRR*AHQVGLRSLPLLVK
Trigger: TTTTACAAGAAGAGGAAGAGAACGCAAGCCCACCTGATGAGCCCACCTTCGATTGTCCTCTGTGTGAAGAAGTAACCATGAGCAGGCAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059320.4
CDS TCA 90 bp TTCTGCAGAAAACATGCTTACAGGCCGCGACCCGAACTGGCGTTTTaGAGACTTCTTGGCATATCGGACAGTAGAAATCATCTTCAGTAT +
Preference number: 5 (lower is better)
Translates to: FCRKHAYRPRPELAF*RLLGISDSRNHLQY
Trigger: ATACTGAAGATGATTTCTACTGTCCGATATGCCAAGAAGTCTTCAAAACGCCAGTTCGGGTCGCGGCCTGTAAGCATGTTTTCTGCAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059320.4
CDS TCA 72 bp GGTCGCCCCATGGAAGAGATAGGCAAATTGGGCAAGTaGCTGAAACGACACGACCTCGGTGGCTGCTGTTGC +
Preference number: 6 (lower is better)
Translates to: GRPMEEIGKLGK*LKRHDLGGCCC
Trigger: GCAACAGCAGCCACCGAGGTCGTGTCGTTTCAGTCACTTGCCCAATTTGCCTATCTCTTCCATGGGGCGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059320.4
CDS CAA 90 bp CTTCTTCACACAGAGGACAATCGAAGGTGGGCTCATCAGGTGGGCTaGCGTTCTCTTCCTCTTCTTGTAAAACCTCAGCATTCGCTGAGG +
Preference number: 6 (lower is better)
Translates to: LLHTEDNRRWAHQVG*RSLPLLVKPQHSLR
Trigger: CCTCAGCGAATGCTGAGGTTTTACAAGAAGAGGAAGAGAACGCAAGCCCACCTGATGAGCCCACCTTCGATTGTCCTCTGTGTGAAGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059320.4
CDS CAA 90 bp AACGACACGACCTCGGTGGCTGCTGTTGCAATGATCCAGCAAACGTaGCCTGCTCATGGTTACTTCTTCACACAGAGGACAATCGAAGGT +
Preference number: 6 (lower is better)
Translates to: NDTTSVAAVAMIQQT*PAHGYFFTQRTIEG
Trigger: ACCTTCGATTGTCCTCTGTGTGAAGAAGTAACCATGAGCAGGCAACGTTTGCTGGATCATTGCAACAGCAGCCACCGAGGTCGTGTCGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059320.4
CDS CAA 72 bp ACCTCGGTGGCTGCTGTTGCAATGATCCAGCAAACGTaGCCTGCTCATGGTTACTTCTTCACACAGAGGACA +
Preference number: 6 (lower is better)
Translates to: TSVAAVAMIQQT*PAHGYFFTQRT
Trigger: TGTCCTCTGTGTGAAGAAGTAACCATGAGCAGGCAACGTTTGCTGGATCATTGCAACAGCAGCCACCGAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059320.4
CDS TCA 72 bp GGGAACAGCATCGGCAATTACCAGGAAAATGTCTCATaGTGGTTTCGAGGTCTACAGCCCTCACTGGACAAG +
Preference number: 6 (lower is better)
Translates to: GNSIGNYQENVS*WFRGLQPSLDK
Trigger: CTTGTCCAGTGAGGGCTGTAGACCTCGAAACCATCATGAGACATTTTCCTGGTAATTGCCGATGCTGTTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059320.4
CDS GCA 72 bp GGTGGCTGCTGTTGCAATGATCCAGCAAACGTTGCCTaGTCATGGTTACTTCTTCACACAGAGGACAATCGA +
Preference number: 6 (lower is better)
Translates to: GGCCCNDPANVA*SWLLLHTEDNR
Trigger: TCGATTGTCCTCTGTGTGAAGAAGTAACCATGAGCAGGCAACGTTTGCTGGATCATTGCAACAGCAGCCACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059320.4
CDS CCA 72 bp TCATGGTTACTTCTTCACACAGAGGACAATCGAAGGTaGGCTCATCAGGTGGGCTTGCGTTCTCTTCCTCTT +
Preference number: 6 (lower is better)
Translates to: SWLLLHTEDNRR*AHQVGLRSLPL
Trigger: AAGAGGAAGAGAACGCAAGCCCACCTGATGAGCCCACCTTCGATTGTCCTCTGTGTGAAGAAGTAACCATGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059320.4
CDS CAA 72 bp ACAGAGGACAATCGAAGGTGGGCTCATCAGGTGGGCTaGCGTTCTCTTCCTCTTCTTGTAAAACCTCAGCAT +
Preference number: 6 (lower is better)
Translates to: TEDNRRWAHQVG*RSLPLLVKPQH
Trigger: ATGCTGAGGTTTTACAAGAAGAGGAAGAGAACGCAAGCCCACCTGATGAGCCCACCTTCGATTGTCCTCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059320.4
CDS CCA 72 bp TGCTGTTGCAATGATCCAGCAAACGTTGCCTGCTCATaGTTACTTCTTCACACAGAGGACAATCGAAGGTGG +
Preference number: 6 (lower is better)
Translates to: CCCNDPANVACS*LLLHTEDNRRW
Trigger: CCACCTTCGATTGTCCTCTGTGTGAAGAAGTAACCATGAGCAGGCAACGTTTGCTGGATCATTGCAACAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059320.4
CDS CAA 90 bp AACATGCTTACAGGCCGCGACCCGAACTGGCGTTTTGAAGACTTCTaGGCATATCGGACAGTAGAAATCATCTTCAGTATAAGACGTGGT +
Preference number: 6 (lower is better)
Translates to: NMLTGRDPNWRFEDF*AYRTVEIIFSIRRG
Trigger: ACCACGTCTTATACTGAAGATGATTTCTACTGTCCGATATGCCAAGAAGTCTTCAAAACGCCAGTTCGGGTCGCGGCCTGTAAGCATGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059320.4
CDS TCA 72 bp AAACATGCTTACAGGCCGCGACCCGAACTGGCGTTTTaGAGACTTCTTGGCATATCGGACAGTAGAAATCAT +
Preference number: 6 (lower is better)
Translates to: KHAYRPRPELAF*RLLGISDSRNH
Trigger: ATGATTTCTACTGTCCGATATGCCAAGAAGTCTTCAAAACGCCAGTTCGGGTCGCGGCCTGTAAGCATGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059320.4
CDS CAA 72 bp ACAGGCCGCGACCCGAACTGGCGTTTTGAAGACTTCTaGGCATATCGGACAGTAGAAATCATCTTCAGTATA +
Preference number: 6 (lower is better)
Translates to: TGRDPNWRFEDF*AYRTVEIIFSI
Trigger: TATACTGAAGATGATTTCTACTGTCCGATATGCCAAGAAGTCTTCAAAACGCCAGTTCGGGTCGCGGCCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059320.4
CDS TCA 72 bp ACTGTTGCCCACGGAGTTTGGAGACTGTTGGAAGCTTaGAACAGATGTAGAAACTCCAAATTCATCCTGGTA +
Preference number: 6 (lower is better)
Translates to: TVAHGVWRLLEA*NRCRNSKFILV
Trigger: TACCAGGATGAATTTGGAGTTTCTACATCTGTTTCAAGCTTCCAACAGTCTCCAAACTCCGTGGGCAACAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059320.4
CDS CCA 72 bp TCGTTGTTACTGTTGCCCACGGAGTTTGGAGACTGTTaGAAGCTTGAAACAGATGTAGAAACTCCAAATTCA +
Preference number: 6 (lower is better)
Translates to: SLLLLPTEFGDC*KLETDVETPNS
Trigger: TGAATTTGGAGTTTCTACATCTGTTTCAAGCTTCCAACAGTCTCCAAACTCCGTGGGCAACAGTAACAACGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059320.4