Pregenerated sensors for RNF138RT1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000083695Ensembl transcript IDs: ENSMUST00000059320.4
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS GCA 90 bp | CACGACCTCGGTGGCTGCTGTTGCAATGATCCAGCAAACGTTGCCTaGTCATGGTTACTTCTTCACACAGAGGACAATCGAAGGTGGGCT | + |
Preference number: 5 (lower is better) Translates to: HDLGGCCCNDPANVA*SWLLLHTEDNRRWA Trigger: AGCCCACCTTCGATTGTCCTCTGTGTGAAGAAGTAACCATGAGCAGGCAACGTTTGCTGGATCATTGCAACAGCAGCCACCGAGGTCGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059320.4 |
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CDS CCA 90 bp | CTCGGTGGCTGCTGTTGCAATGATCCAGCAAACGTTGCCTGCTCATaGTTACTTCTTCACACAGAGGACAATCGAAGGTGGGCTCATCAG | + |
Preference number: 5 (lower is better) Translates to: LGGCCCNDPANVACS*LLLHTEDNRRWAHQ Trigger: CTGATGAGCCCACCTTCGATTGTCCTCTGTGTGAAGAAGTAACCATGAGCAGGCAACGTTTGCTGGATCATTGCAACAGCAGCCACCGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059320.4 |
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CDS CCA 90 bp | GCCGGTGCCTCGTTGTTACTGTTGCCCACGGAGTTTGGAGACTGTTaGAAGCTTGAAACAGATGTAGAAACTCCAAATTCATCCTGGTAC | + |
Preference number: 5 (lower is better) Translates to: AGASLLLLPTEFGDC*KLETDVETPNSSWY Trigger: GTACCAGGATGAATTTGGAGTTTCTACATCTGTTTCAAGCTTCCAACAGTCTCCAAACTCCGTGGGCAACAGTAACAACGAGGCACCGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059320.4 |
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CDS CCA 90 bp | GTTGCCTGCTCATGGTTACTTCTTCACACAGAGGACAATCGAAGGTaGGCTCATCAGGTGGGCTTGCGTTCTCTTCCTCTTCTTGTAAAA | + |
Preference number: 5 (lower is better) Translates to: VACSWLLLHTEDNRR*AHQVGLRSLPLLVK Trigger: TTTTACAAGAAGAGGAAGAGAACGCAAGCCCACCTGATGAGCCCACCTTCGATTGTCCTCTGTGTGAAGAAGTAACCATGAGCAGGCAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059320.4 |
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CDS TCA 90 bp | TTCTGCAGAAAACATGCTTACAGGCCGCGACCCGAACTGGCGTTTTaGAGACTTCTTGGCATATCGGACAGTAGAAATCATCTTCAGTAT | + |
Preference number: 5 (lower is better) Translates to: FCRKHAYRPRPELAF*RLLGISDSRNHLQY Trigger: ATACTGAAGATGATTTCTACTGTCCGATATGCCAAGAAGTCTTCAAAACGCCAGTTCGGGTCGCGGCCTGTAAGCATGTTTTCTGCAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059320.4 |
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CDS TCA 72 bp | GGTCGCCCCATGGAAGAGATAGGCAAATTGGGCAAGTaGCTGAAACGACACGACCTCGGTGGCTGCTGTTGC | + |
Preference number: 6 (lower is better) Translates to: GRPMEEIGKLGK*LKRHDLGGCCC Trigger: GCAACAGCAGCCACCGAGGTCGTGTCGTTTCAGTCACTTGCCCAATTTGCCTATCTCTTCCATGGGGCGACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059320.4 |
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CDS CAA 90 bp | CTTCTTCACACAGAGGACAATCGAAGGTGGGCTCATCAGGTGGGCTaGCGTTCTCTTCCTCTTCTTGTAAAACCTCAGCATTCGCTGAGG | + |
Preference number: 6 (lower is better) Translates to: LLHTEDNRRWAHQVG*RSLPLLVKPQHSLR Trigger: CCTCAGCGAATGCTGAGGTTTTACAAGAAGAGGAAGAGAACGCAAGCCCACCTGATGAGCCCACCTTCGATTGTCCTCTGTGTGAAGAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059320.4 |
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CDS CAA 90 bp | AACGACACGACCTCGGTGGCTGCTGTTGCAATGATCCAGCAAACGTaGCCTGCTCATGGTTACTTCTTCACACAGAGGACAATCGAAGGT | + |
Preference number: 6 (lower is better) Translates to: NDTTSVAAVAMIQQT*PAHGYFFTQRTIEG Trigger: ACCTTCGATTGTCCTCTGTGTGAAGAAGTAACCATGAGCAGGCAACGTTTGCTGGATCATTGCAACAGCAGCCACCGAGGTCGTGTCGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059320.4 |
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CDS CAA 72 bp | ACCTCGGTGGCTGCTGTTGCAATGATCCAGCAAACGTaGCCTGCTCATGGTTACTTCTTCACACAGAGGACA | + |
Preference number: 6 (lower is better) Translates to: TSVAAVAMIQQT*PAHGYFFTQRT Trigger: TGTCCTCTGTGTGAAGAAGTAACCATGAGCAGGCAACGTTTGCTGGATCATTGCAACAGCAGCCACCGAGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059320.4 |
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CDS TCA 72 bp | GGGAACAGCATCGGCAATTACCAGGAAAATGTCTCATaGTGGTTTCGAGGTCTACAGCCCTCACTGGACAAG | + |
Preference number: 6 (lower is better) Translates to: GNSIGNYQENVS*WFRGLQPSLDK Trigger: CTTGTCCAGTGAGGGCTGTAGACCTCGAAACCATCATGAGACATTTTCCTGGTAATTGCCGATGCTGTTCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059320.4 |
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CDS GCA 72 bp | GGTGGCTGCTGTTGCAATGATCCAGCAAACGTTGCCTaGTCATGGTTACTTCTTCACACAGAGGACAATCGA | + |
Preference number: 6 (lower is better) Translates to: GGCCCNDPANVA*SWLLLHTEDNR Trigger: TCGATTGTCCTCTGTGTGAAGAAGTAACCATGAGCAGGCAACGTTTGCTGGATCATTGCAACAGCAGCCACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059320.4 |
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CDS CCA 72 bp | TCATGGTTACTTCTTCACACAGAGGACAATCGAAGGTaGGCTCATCAGGTGGGCTTGCGTTCTCTTCCTCTT | + |
Preference number: 6 (lower is better) Translates to: SWLLLHTEDNRR*AHQVGLRSLPL Trigger: AAGAGGAAGAGAACGCAAGCCCACCTGATGAGCCCACCTTCGATTGTCCTCTGTGTGAAGAAGTAACCATGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059320.4 |
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CDS CAA 72 bp | ACAGAGGACAATCGAAGGTGGGCTCATCAGGTGGGCTaGCGTTCTCTTCCTCTTCTTGTAAAACCTCAGCAT | + |
Preference number: 6 (lower is better) Translates to: TEDNRRWAHQVG*RSLPLLVKPQH Trigger: ATGCTGAGGTTTTACAAGAAGAGGAAGAGAACGCAAGCCCACCTGATGAGCCCACCTTCGATTGTCCTCTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059320.4 |
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CDS CCA 72 bp | TGCTGTTGCAATGATCCAGCAAACGTTGCCTGCTCATaGTTACTTCTTCACACAGAGGACAATCGAAGGTGG | + |
Preference number: 6 (lower is better) Translates to: CCCNDPANVACS*LLLHTEDNRRW Trigger: CCACCTTCGATTGTCCTCTGTGTGAAGAAGTAACCATGAGCAGGCAACGTTTGCTGGATCATTGCAACAGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059320.4 |
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CDS CAA 90 bp | AACATGCTTACAGGCCGCGACCCGAACTGGCGTTTTGAAGACTTCTaGGCATATCGGACAGTAGAAATCATCTTCAGTATAAGACGTGGT | + |
Preference number: 6 (lower is better) Translates to: NMLTGRDPNWRFEDF*AYRTVEIIFSIRRG Trigger: ACCACGTCTTATACTGAAGATGATTTCTACTGTCCGATATGCCAAGAAGTCTTCAAAACGCCAGTTCGGGTCGCGGCCTGTAAGCATGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059320.4 |
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CDS TCA 72 bp | AAACATGCTTACAGGCCGCGACCCGAACTGGCGTTTTaGAGACTTCTTGGCATATCGGACAGTAGAAATCAT | + |
Preference number: 6 (lower is better) Translates to: KHAYRPRPELAF*RLLGISDSRNH Trigger: ATGATTTCTACTGTCCGATATGCCAAGAAGTCTTCAAAACGCCAGTTCGGGTCGCGGCCTGTAAGCATGTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059320.4 |
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CDS CAA 72 bp | ACAGGCCGCGACCCGAACTGGCGTTTTGAAGACTTCTaGGCATATCGGACAGTAGAAATCATCTTCAGTATA | + |
Preference number: 6 (lower is better) Translates to: TGRDPNWRFEDF*AYRTVEIIFSI Trigger: TATACTGAAGATGATTTCTACTGTCCGATATGCCAAGAAGTCTTCAAAACGCCAGTTCGGGTCGCGGCCTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059320.4 |
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CDS TCA 72 bp | ACTGTTGCCCACGGAGTTTGGAGACTGTTGGAAGCTTaGAACAGATGTAGAAACTCCAAATTCATCCTGGTA | + |
Preference number: 6 (lower is better) Translates to: TVAHGVWRLLEA*NRCRNSKFILV Trigger: TACCAGGATGAATTTGGAGTTTCTACATCTGTTTCAAGCTTCCAACAGTCTCCAAACTCCGTGGGCAACAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059320.4 |
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CDS CCA 72 bp | TCGTTGTTACTGTTGCCCACGGAGTTTGGAGACTGTTaGAAGCTTGAAACAGATGTAGAAACTCCAAATTCA | + |
Preference number: 6 (lower is better) Translates to: SLLLLPTEFGDC*KLETDVETPNS Trigger: TGAATTTGGAGTTTCTACATCTGTTTCAAGCTTCCAACAGTCTCCAAACTCCGTGGGCAACAGTAACAACGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059320.4 |