Pregenerated sensors for RNF138 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024317Ensembl transcript IDs: ENSMUST00000052396.7, ENSMUST00000072847.12, ENSMUST00000234107.2, ENSMUST00000234536.2, ENSMUST00000234545.2
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATGTTAGTGTGGAATGTCAGAATTCCCCCTTCACCCTTTACTTTGTaGCTTGGCCTTCTCTACAACACTTTATACCAAAGATTAAGAACA | + |
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Preference number: 1 (lower is better) Translates to: MLVWNVRIPPSPFTL*LGLLYNTLYQRLRT Trigger: TGTTCTTAATCTTTGGTATAAAGTGTTGTAGAGAAGGCCAAGTCACAAAGTAAAGGGTGAAGGGGGAATTCTGACATTCCACACTAACAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000052396.7 ENSMUST00000072847.12 ENSMUST00000234107.2 ENSMUST00000234536.2 ENSMUST00000234545.2 |
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| 3UTR-3UTR GCA 90 bp | TCAGAATTCCCCCTTCACCCTTTACTTTGTGACTTGGCCTTCTCTACAACACTTATGGCACTTGTAGGTTaGAAGGAGGCAGAGATGTCT | + |
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Preference number: 2 (lower is better) Translates to: SEFPLHPLLCDLAFSTTLMALVG*KEAEMS Trigger: AGACATCTCTGCCTCCTTGCAACCTACAAGTGCCAT...AAGTGTTGTAGAGAAGGCCAAGTCACAAAGTAAAGGGTGAAGGGGGAATTCTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000052396.7 ENSMUST00000072847.12 ENSMUST00000234107.2 ENSMUST00000234536.2 ENSMUST00000234545.2 |
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| 3UTR-3UTR TCA 90 bp | TCAGAATTCCCCCTTCACCCTTTACTTTGTGACTTGGCCTTCTCTACAACACTTTCCATTCTACAGCTCTaGCAAATGGCTCAGGTTTAT | + |
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Preference number: 2 (lower is better) Translates to: SEFPLHPLLCDLAFSTTLSILQL*QMAQVY Trigger: ATAAACCTGAGCCATTTGTCAGAGCTGTAGAATGGA...AAGTGTTGTAGAGAAGGCCAAGTCACAAAGTAAAGGGTGAAGGGGGAATTCTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000052396.7 ENSMUST00000072847.12 ENSMUST00000234107.2 ENSMUST00000234536.2 ENSMUST00000234545.2 |
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| 3UTR-3UTR TCA 90 bp | TCAGAATTCCCCCTTCACCCTTTACTTTGTGACTTGGCCTTCTCTACAACACTTCCCAGTGAGAAATACTaGCTACAAAGAACTGTGGTA | + |
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Preference number: 2 (lower is better) Translates to: SEFPLHPLLCDLAFSTTLPSEKY*LQRTVV Trigger: TACCACAGTTCTTTGTAGTCAGTATTTCTCACTGGG...AAGTGTTGTAGAGAAGGCCAAGTCACAAAGTAAAGGGTGAAGGGGGAATTCTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000052396.7 ENSMUST00000072847.12 ENSMUST00000234107.2 ENSMUST00000234536.2 ENSMUST00000234545.2 |
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| 3UTR-3UTR TCA 90 bp | ATGTCAGAATTCCCCCTTCACCCTTTACTTTGTGACTTGGCCTTCTCTACAACACCCAGTGAGAAATACTaGCTACAAAGAACTGTGGTA | + |
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Preference number: 2 (lower is better) Translates to: MSEFPLHPLLCDLAFSTTPSEKY*LQRTVV Trigger: TACCACAGTTCTTTGTAGTCAGTATTTCTCACTGGG...TGTTGTAGAGAAGGCCAAGTCACAAAGTAAAGGGTGAAGGGGGAATTCTGACAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000052396.7 ENSMUST00000072847.12 ENSMUST00000234107.2 ENSMUST00000234536.2 ENSMUST00000234545.2 |
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| 3UTR-3UTR GCA 90 bp | GTATGTCAACTCAAAGTGCTAGAGAACACAGTAAACATCACGCTCAAGAAACAAATGGCACTTGTAGGTTaGAAGGAGGCAGAGATGTCT | + |
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Preference number: 2 (lower is better) Translates to: VCQLKVLENTVNITLKKQMALVG*KEAEMS Trigger: AGACATCTCTGCCTCCTTGCAACCTACAAGTGCCAT...TTGTTTCTTGAGCGTGATGTTTACTGTGTTCTCTAGCACTTTGAGTTGACATAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052396.7 ENSMUST00000072847.12 |
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| 3UTR-3UTR GCA 90 bp | CTGGTAAAATCTCTCACCACACGTCAGTTATGCATCATTTTCAAACGTAACAAGATGGCACTTGTAGGTTaGAAGGAGGCAGAGATGTCT | + |
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Preference number: 2 (lower is better) Translates to: LVKSLTTRQLCIIFKRNKMALVG*KEAEMS Trigger: AGACATCTCTGCCTCCTTGCAACCTACAAGTGCCAT...CTTGTTACGTTTGAAAATGATGCATAACTGACGTGTGGTGAGAGATTTTACCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000052396.7 ENSMUST00000072847.12 ENSMUST00000234107.2 ENSMUST00000234536.2 ENSMUST00000234545.2 |
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| 3UTR-3UTR CCA 90 bp | TCAGAATTCCCCCTTCACCCTTTACTTTGTGACTTGGCCTTCTCTACAACACTTAGAATGGTATTAGGGTaGCCCACCTTTATTTTCAAT | + |
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Preference number: 2 (lower is better) Translates to: SEFPLHPLLCDLAFSTTLRMVLG*PTFIFN Trigger: ATTGAAAATAAAGGTGGGCCACCCTAATACCATTCT...AAGTGTTGTAGAGAAGGCCAAGTCACAAAGTAAAGGGTGAAGGGGGAATTCTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000052396.7 ENSMUST00000072847.12 ENSMUST00000234107.2 ENSMUST00000234536.2 ENSMUST00000234545.2 |
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| 3UTR-3UTR CCA 90 bp | ATGTCAGAATTCCCCCTTCACCCTTTACTTTGTGACTTGGCCTTCTCTACAACATACAGCTCTGACAAATaGCTCAGGTTTATTAGCTTT | + |
|
Preference number: 2 (lower is better) Translates to: MSEFPLHPLLCDLAFSTTYSSDK*LRFISF Trigger: AAAGCTAATAAACCTGAGCCATTTGTCAGAGCTGTA...TGTTGTAGAGAAGGCCAAGTCACAAAGTAAAGGGTGAAGGGGGAATTCTGACAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000052396.7 ENSMUST00000072847.12 ENSMUST00000234107.2 ENSMUST00000234536.2 ENSMUST00000234545.2 |
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| 3UTR-3UTR CCA 90 bp | ATGTCAGAATTCCCCCTTCACCCTTTACTTTGTGACTTGGCCTTCTCTACAACAGAATGTATCATTCACTaGCTGAAAAGTTTCATCACC | + |
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Preference number: 2 (lower is better) Translates to: MSEFPLHPLLCDLAFSTTECIIH*LKSFIT Trigger: GGTGATGAAACTTTTCAGCCAGTGAATGATACATTC...TGTTGTAGAGAAGGCCAAGTCACAAAGTAAAGGGTGAAGGGGGAATTCTGACAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000052396.7 ENSMUST00000072847.12 ENSMUST00000234107.2 ENSMUST00000234536.2 ENSMUST00000234545.2 |
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| 3UTR-3UTR TCA 90 bp | CTGGTAAAATCTCTCACCACACGTCAGTTATGCATCATTTTCAAACGTAACAAGTCCATTCTACAGCTCTaGCAAATGGCTCAGGTTTAT | + |
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Preference number: 2 (lower is better) Translates to: LVKSLTTRQLCIIFKRNKSILQL*QMAQVY Trigger: ATAAACCTGAGCCATTTGTCAGAGCTGTAGAATGGA...CTTGTTACGTTTGAAAATGATGCATAACTGACGTGTGGTGAGAGATTTTACCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000052396.7 ENSMUST00000072847.12 ENSMUST00000234107.2 ENSMUST00000234536.2 ENSMUST00000234545.2 |
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| 3UTR-3UTR CCA 90 bp | GTATGTCAACTCAAAGTGCTAGAGAACACAGTAAACATCACGCTCAAGAAACAAAGAATGGTATTAGGGTaGCCCACCTTTATTTTCAAT | + |
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Preference number: 2 (lower is better) Translates to: VCQLKVLENTVNITLKKQRMVLG*PTFIFN Trigger: ATTGAAAATAAAGGTGGGCCACCCTAATACCATTCT...TTGTTTCTTGAGCGTGATGTTTACTGTGTTCTCTAGCACTTTGAGTTGACATAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052396.7 ENSMUST00000072847.12 |
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| 3UTR-3UTR CCA 90 bp | CTGGTAAAATCTCTCACCACACGTCAGTTATGCATCATTTTCAAACGTAACAAGAGAATGGTATTAGGGTaGCCCACCTTTATTTTCAAT | + |
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Preference number: 2 (lower is better) Translates to: LVKSLTTRQLCIIFKRNKRMVLG*PTFIFN Trigger: ATTGAAAATAAAGGTGGGCCACCCTAATACCATTCT...CTTGTTACGTTTGAAAATGATGCATAACTGACGTGTGGTGAGAGATTTTACCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 5 transcripts: ENSMUST00000052396.7 ENSMUST00000072847.12 ENSMUST00000234107.2 ENSMUST00000234536.2 ENSMUST00000234545.2 |
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| 3UTR-3UTR CCA 90 bp | GTATGTCAACTCAAAGTGCTAGAGAACACAGTAAACATCACGCTCAAGAAACAATACAGCTCTGACAAATaGCTCAGGTTTATTAGCTTT | + |
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Preference number: 2 (lower is better) Translates to: VCQLKVLENTVNITLKKQYSSDK*LRFISF Trigger: AAAGCTAATAAACCTGAGCCATTTGTCAGAGCTGTA...TTGTTTCTTGAGCGTGATGTTTACTGTGTTCTCTAGCACTTTGAGTTGACATAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052396.7 ENSMUST00000072847.12 |
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| 3UTR-3UTR CCA 90 bp | CTTGTATGTCAACTCAAAGTGCTAGAGAACACAGTAAACATCACGCTCAAGAAAGAATGTATCATTCACTaGCTGAAAAGTTTCATCACC | + |
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Preference number: 2 (lower is better) Translates to: LVCQLKVLENTVNITLKKECIIH*LKSFIT Trigger: GGTGATGAAACTTTTCAGCCAGTGAATGATACATTC...TTTCTTGAGCGTGATGTTTACTGTGTTCTCTAGCACTTTGAGTTGACATACAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052396.7 ENSMUST00000072847.12 |
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| 3UTR-3UTR CCA 90 bp | CTGGTAAAATCTCTCACCACACGTCAGTTATGCATCATTTTCAAACGTAACAAGGAATGTATCATTCACTaGCTGAAAAGTTTCATCACC | + |
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Preference number: 2 (lower is better) Translates to: LVKSLTTRQLCIIFKRNKECIIH*LKSFIT Trigger: GGTGATGAAACTTTTCAGCCAGTGAATGATACATTC...CTTGTTACGTTTGAAAATGATGCATAACTGACGTGTGGTGAGAGATTTTACCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 5 transcripts: ENSMUST00000052396.7 ENSMUST00000072847.12 ENSMUST00000234107.2 ENSMUST00000234536.2 ENSMUST00000234545.2 |
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| 3UTR CCA 72 bp | TGTCAGAATTCCCCCTTCACCCTTTACTTTGTGACTTaGCCTTCTCTACAACACTTTATACCAAAGATTAAG | + |
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Preference number: 3 (lower is better) Translates to: CQNSPFTLYFVT*PSLQHFIPKIK Trigger: CTTAATCTTTGGTATAAAGTGTTGTAGAGAAGGCCAAGTCACAAAGTAAAGGGTGAAGGGGGAATTCTGACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000052396.7 ENSMUST00000072847.12 ENSMUST00000234107.2 ENSMUST00000234536.2 ENSMUST00000234545.2 |
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| CDS-3UTR TCA 90 bp | TCAGAATTCCCCCTTCACCCTTTACTTTGTGACTTGGCCTTCTCTACAACACTTCTACAGAAAACGTGCTaGCAGGCCGCGGTCCGCACC | + |
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Preference number: 4 (lower is better) Translates to: SEFPLHPLLCDLAFSTTLLQKTC*QAAVRT Trigger: GGTGCGGACCGCGGCCTGTCAGCACGTTTTCTGTAG...AAGTGTTGTAGAGAAGGCCAAGTCACAAAGTAAAGGGTGAAGGGGGAATTCTGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000052396.7 ENSMUST00000072847.12 ENSMUST00000234107.2 ENSMUST00000234536.2 ENSMUST00000234545.2 |
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| CDS-3UTR TCA 90 bp | ATGTCAGAATTCCCCCTTCACCCTTTACTTTGTGACTTGGCCTTCTCTACAACACTACAGAAAACGTGCTaGCAGGCCGCGGTCCGCACC | + |
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Preference number: 4 (lower is better) Translates to: MSEFPLHPLLCDLAFSTTLQKTC*QAAVRT Trigger: GGTGCGGACCGCGGCCTGTCAGCACGTTTTCTGTAG...TGTTGTAGAGAAGGCCAAGTCACAAAGTAAAGGGTGAAGGGGGAATTCTGACAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000052396.7 ENSMUST00000072847.12 ENSMUST00000234107.2 ENSMUST00000234536.2 ENSMUST00000234545.2 |
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| CDS-3UTR CCA 90 bp | ATGTCAGAATTCCCCCTTCACCCTTTACTTTGTGACTTGGCCTTCTCTACAACACTTCCGTGTAGGACGTaGCCGCCGAAAGTTCCTCGG | + |
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Preference number: 4 (lower is better) Translates to: MSEFPLHPLLCDLAFSTTLPCRT*PPKVPR Trigger: CCGAGGAACTTTCGGCGGCCACGTCCTACACGGAAG...TGTTGTAGAGAAGGCCAAGTCACAAAGTAAAGGGTGAAGGGGGAATTCTGACAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000052396.7 ENSMUST00000072847.12 ENSMUST00000234107.2 ENSMUST00000234536.2 |
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| CDS-3UTR TCA 90 bp | AGACAACAGAGATTCTCTTTTCACCACACAAGTGAAATACAACCCTTTCCATGCCTACAGAAAACGTGCTaGCAGGCCGCGGTCCGCACC | + |
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Preference number: 4 (lower is better) Translates to: RQQRFSFHHTSEIQPFPCLQKTC*QAAVRT Trigger: GGTGCGGACCGCGGCCTGTCAGCACGTTTTCTGTAG...GCATGGAAAGGGTTGTATTTCACTTGTGTGGTGAAAAGAGAATCTCTGTTGTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000052396.7 ENSMUST00000072847.12 ENSMUST00000234107.2 ENSMUST00000234536.2 ENSMUST00000234545.2 |
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| CDS-3UTR TCA 90 bp | CTGGTAAAATCTCTCACCACACGTCAGTTATGCATCATTTTCAAACGTAACAAGCTACAGAAAACGTGCTaGCAGGCCGCGGTCCGCACC | + |
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Preference number: 4 (lower is better) Translates to: LVKSLTTRQLCIIFKRNKLQKTC*QAAVRT Trigger: GGTGCGGACCGCGGCCTGTCAGCACGTTTTCTGTAG...CTTGTTACGTTTGAAAATGATGCATAACTGACGTGTGGTGAGAGATTTTACCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 5 transcripts: ENSMUST00000052396.7 ENSMUST00000072847.12 ENSMUST00000234107.2 ENSMUST00000234536.2 ENSMUST00000234545.2 |
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| CDS-3UTR GCA 90 bp | ATGTCAGAATTCCCCCTTCACCCTTTACTTTGTGACTTGGCCTTCTCTACAACAGGCCCGTTCCGGACATaGTCTTTCTCTTCTAGTCAC | + |
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Preference number: 4 (lower is better) Translates to: MSEFPLHPLLCDLAFSTTGPFRT*SFSSSH Trigger: GTGACTAGAAGAGAAAGAGCATGTCCGGAACGGGCC...TGTTGTAGAGAAGGCCAAGTCACAAAGTAAAGGGTGAAGGGGGAATTCTGACAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000052396.7 ENSMUST00000072847.12 ENSMUST00000234107.2 ENSMUST00000234536.2 ENSMUST00000234545.2 |
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| CDS-3UTR CCA 90 bp | CTTGTATGTCAACTCAAAGTGCTAGAGAACACAGTAAACATCACGCTCAAGAAACTTCCGTGTAGGACGTaGCCGCCGAAAGTTCCTCGG | + |
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Preference number: 4 (lower is better) Translates to: LVCQLKVLENTVNITLKKLPCRT*PPKVPR Trigger: CCGAGGAACTTTCGGCGGCCACGTCCTACACGGAAG...TTTCTTGAGCGTGATGTTTACTGTGTTCTCTAGCACTTTGAGTTGACATACAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052396.7 ENSMUST00000072847.12 |
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| CDS-3UTR GCA 90 bp | GTATGTCAACTCAAAGTGCTAGAGAACACAGTAAACATCACGCTCAAGAAACAAGGCCCGTTCCGGACATaGTCTTTCTCTTCTAGTCAC | + |
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Preference number: 4 (lower is better) Translates to: VCQLKVLENTVNITLKKQGPFRT*SFSSSH Trigger: GTGACTAGAAGAGAAAGAGCATGTCCGGAACGGGCC...TTGTTTCTTGAGCGTGATGTTTACTGTGTTCTCTAGCACTTTGAGTTGACATAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052396.7 ENSMUST00000072847.12 |
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| CDS-3UTR GCA 90 bp | CTTGTATGTCAACTCAAAGTGCTAGAGAACACAGTAAACATCACGCTCAAGAAAGGCCCGTTCCGGACATaGTCTTTCTCTTCTAGTCAC | + |
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Preference number: 4 (lower is better) Translates to: LVCQLKVLENTVNITLKKGPFRT*SFSSSH Trigger: GTGACTAGAAGAGAAAGAGCATGTCCGGAACGGGCC...TTTCTTGAGCGTGATGTTTACTGTGTTCTCTAGCACTTTGAGTTGACATACAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052396.7 ENSMUST00000072847.12 |
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| CDS-3UTR GCA 90 bp | CTGGTAAAATCTCTCACCACACGTCAGTTATGCATCATTTTCAAACGTAACAAGGGCCCGTTCCGGACATaGTCTTTCTCTTCTAGTCAC | + |
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Preference number: 4 (lower is better) Translates to: LVKSLTTRQLCIIFKRNKGPFRT*SFSSSH Trigger: GTGACTAGAAGAGAAAGAGCATGTCCGGAACGGGCC...CTTGTTACGTTTGAAAATGATGCATAACTGACGTGTGGTGAGAGATTTTACCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000052396.7 ENSMUST00000072847.12 ENSMUST00000234107.2 ENSMUST00000234536.2 ENSMUST00000234545.2 |
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| CDS-3UTR TCA 90 bp | ATGTCAGAATTCCCCCTTCACCCTTTACTTTGTGACTTGGCCTTCTCTACAACAGTTTCCTCATCTAGCTaGAGATTCACAAATTCTCCA | + |
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Preference number: 4 (lower is better) Translates to: MSEFPLHPLLCDLAFSTTVSSSS*RFTNSP Trigger: TGGAGAATTTGTGAATCTTCAGCTAGATGAGGAAAC...TGTTGTAGAGAAGGCCAAGTCACAAAGTAAAGGGTGAAGGGGGAATTCTGACAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000234107.2 ENSMUST00000234536.2 |
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| CDS-3UTR TCA 90 bp | TCAGAATTCCCCCTTCACCCTTTACTTTGTGACTTGGCCTTCTCTACAACACTTGTGAAATTTGACTCTTaGCATAAGGGACACTTAAAG | + |
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Preference number: 4 (lower is better) Translates to: SEFPLHPLLCDLAFSTTLVKFDS*HKGHLK Trigger: CTTTAAGTGTCCCTTATGTCAAGAGTCAAATTTCAC...AAGTGTTGTAGAGAAGGCCAAGTCACAAAGTAAAGGGTGAAGGGGGAATTCTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000052396.7 ENSMUST00000072847.12 ENSMUST00000234107.2 ENSMUST00000234536.2 ENSMUST00000234545.2 |
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| CDS-3UTR GCA 90 bp | GTATGTCAACTCAAAGTGCTAGAGAACACAGTAAACATCACGCTCAAGAAACAATTTCACTCCTATTACTaGTCCTTACTGAATCTTGAG | + |
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Preference number: 4 (lower is better) Translates to: VCQLKVLENTVNITLKKQFHSYY*SLLNLE Trigger: CTCAAGATTCAGTAAGGAGCAGTAATAGGAGTGAAA...TTGTTTCTTGAGCGTGATGTTTACTGTGTTCTCTAGCACTTTGAGTTGACATAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052396.7 ENSMUST00000072847.12 |
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| CDS-3UTR CAA 90 bp | ATGTCAGAATTCCCCCTTCACCCTTTACTTTGTGACTTGGCCTTCTCTACAACAGATGCCCAGAAGAACTaGTATCCTCTTGATAAGTTT | + |
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Preference number: 5 (lower is better) Translates to: MSEFPLHPLLCDLAFSTTDAQKN*YPLDKF Trigger: AAACTTATCAAGAGGATACAAGTTCTTCTGGGCATC...TGTTGTAGAGAAGGCCAAGTCACAAAGTAAAGGGTGAAGGGGGAATTCTGACAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000052396.7 ENSMUST00000072847.12 ENSMUST00000234107.2 ENSMUST00000234536.2 |
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| CDS-3UTR CAA 90 bp | GTATGTCAACTCAAAGTGCTAGAGAACACAGTAAACATCACGCTCAAGAAACAAGATGCCCAGAAGAACTaGTATCCTCTTGATAAGTTT | + |
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Preference number: 5 (lower is better) Translates to: VCQLKVLENTVNITLKKQDAQKN*YPLDKF Trigger: AAACTTATCAAGAGGATACAAGTTCTTCTGGGCATC...TTGTTTCTTGAGCGTGATGTTTACTGTGTTCTCTAGCACTTTGAGTTGACATAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052396.7 ENSMUST00000072847.12 |
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| CDS-3UTR CAA 90 bp | CTTGTATGTCAACTCAAAGTGCTAGAGAACACAGTAAACATCACGCTCAAGAAAGATGCCCAGAAGAACTaGTATCCTCTTGATAAGTTT | + |
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Preference number: 5 (lower is better) Translates to: LVCQLKVLENTVNITLKKDAQKN*YPLDKF Trigger: AAACTTATCAAGAGGATACAAGTTCTTCTGGGCATC...TTTCTTGAGCGTGATGTTTACTGTGTTCTCTAGCACTTTGAGTTGACATACAAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052396.7 ENSMUST00000072847.12 |
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| CDS-3UTR CAA 90 bp | CTGGTAAAATCTCTCACCACACGTCAGTTATGCATCATTTTCAAACGTAACAAGGATGCCCAGAAGAACTaGTATCCTCTTGATAAGTTT | + |
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Preference number: 5 (lower is better) Translates to: LVKSLTTRQLCIIFKRNKDAQKN*YPLDKF Trigger: AAACTTATCAAGAGGATACAAGTTCTTCTGGGCATC...CTTGTTACGTTTGAAAATGATGCATAACTGACGTGTGGTGAGAGATTTTACCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000052396.7 ENSMUST00000072847.12 ENSMUST00000234107.2 ENSMUST00000234536.2 |
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