Pregenerated sensors for RNF135 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020707Ensembl transcript IDs: ENSMUST00000017839.3
Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCCATAGGGAATGGTTCGAAGTCCTTCTTATTAGGCAGGCTATTCTaGGGCCTCAGAGGTCACTGTGAGGAGACACTCCAGACCAGCTCT | + |
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Preference number: 1 (lower is better) Translates to: AIGNGSKSFLLGRLF*GLRGHCEETLQTSS Trigger: AGAGCTGGTCTGGAGTGTCTCCTCACAGTGACCTCTGAGGCCTCAGAATAGCCTGCCTAATAAGAAGGACTTCGAACCATTCCCTATGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| 3UTR-3UTR CCA 90 bp | ATGAACAGTAGAAAAAGGCACACGAGCAGGGTCCAGGAGCACTCCCTCTTACCACCACGTCCCAAGTGCTaGAGTTATAGGTATGCACTA | + |
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Preference number: 2 (lower is better) Translates to: MNSRKRHTSRVQEHSLLPPRPKC*SYRYAL Trigger: TAGTGCATACCTATAACTCCAGCACTTGGGACGTGG...TGGTAAGAGGGAGTGCTCCTGGACCCTGCTCGTGTGCCTTTTTCTACTGTTCAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| 3UTR TCA 72 bp | AATGGTTCGAAGTCCTTCTTATTAGGCAGGCTATTCTaGGGCCTCAGAGGTCACTGTGAGGAGACACTCCAG | + |
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Preference number: 3 (lower is better) Translates to: NGSKSFLLGRLF*GLRGHCEETLQ Trigger: CTGGAGTGTCTCCTCACAGTGACCTCTGAGGCCTCAGAATAGCCTGCCTAATAAGAAGGACTTCGAACCATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| 3UTR CCA 72 bp | CTTGCAGTGATCCACCTACCTCCACGTCCCAAGTGCTaGAGTTATAGGTATGCACTACTATATCCAGTCTCC | + |
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Preference number: 3 (lower is better) Translates to: LAVIHLPPRPKC*SYRYALLYPVS Trigger: GGAGACTGGATATAGTAGTGCATACCTATAACTCCAGCACTTGGGACGTGGAGGTAGGTGGATCACTGCAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| 3UTR-3UTR CAA 90 bp | ATGAACAGTAGAAAAAGGCACACGAGCAGGGTCCAGGAGCACTCCCTCTTACCACTTGAACTATCTTTATaGACCATGCTAGCCTCAAAC | + |
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Preference number: 3 (lower is better) Translates to: MNSRKRHTSRVQEHSLLPLELSL*TMLASN Trigger: GTTTGAGGCTAGCATGGTCAATAAAGATAGTTCAAG...TGGTAAGAGGGAGTGCTCCTGGACCCTGCTCGTGTGCCTTTTTCTACTGTTCAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| 3UTR GCA 72 bp | AAACTTGCAGTGATCCACCTACCTCCACGTCCCAAGTaGTGGAGTTATAGGTATGCACTACTATATCCAGTC | + |
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Preference number: 3 (lower is better) Translates to: KLAVIHLPPRPK*WSYRYALLYPV Trigger: GACTGGATATAGTAGTGCATACCTATAACTCCAGCACTTGGGACGTGGAGGTAGGTGGATCACTGCAAGTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS-3UTR CCA 90 bp | ATGAACAGTAGAAAAAGGCACACGAGCAGGGTCCAGGAGCACTCCCTCTTACCAGGCAGCGTGGTGGGCTaGTCTAGTAGCCCTTGGCAG | + |
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Preference number: 4 (lower is better) Translates to: MNSRKRHTSRVQEHSLLPGSVVG*SSSPWQ Trigger: CTGCCAAGGGCTACTAGACCAGCCCACCACGCTGCC...TGGTAAGAGGGAGTGCTCCTGGACCCTGCTCGTGTGCCTTTTTCTACTGTTCAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS-3UTR CCA 90 bp | ATGAACAGTAGAAAAAGGCACACGAGCAGGGTCCAGGAGCACTCCCTCTTACCAACCTCCCGCGCCGCTTaGAGGTACTTGTCCACCAGG | + |
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Preference number: 4 (lower is better) Translates to: MNSRKRHTSRVQEHSLLPTSRAA*RYLSTR Trigger: CCTGGTGGACAAGTACCTCCAAGCGGCGCGGGAGGT...TGGTAAGAGGGAGTGCTCCTGGACCCTGCTCGTGTGCCTTTTTCTACTGTTCAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS-3UTR CCA 90 bp | ATGAACAGTAGAAAAAGGCACACGAGCAGGGTCCAGGAGCACTCCCTCTTACCAAGGGGGCGCTCTCCCTaGGACACTCCCTTGCAGTTT | + |
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Preference number: 4 (lower is better) Translates to: MNSRKRHTSRVQEHSLLPRGRSP*DTPLQF Trigger: AAACTGCAAGGGAGTGTCCCAGGGAGAGCGCCCCCT...TGGTAAGAGGGAGTGCTCCTGGACCCTGCTCGTGTGCCTTTTTCTACTGTTCAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS-3UTR CCA 90 bp | GACCATGCTAGCCTCAAACTTGCAGTGATCCACCTACCTCCACGTCCCAAGTGCAAGAAGCTACCCCGATaGCCCAGTGGCTACAGTTCC | + |
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Preference number: 4 (lower is better) Translates to: DHASLKLAVIHLPPRPKCKKLPR*PSGYSS Trigger: GGAACTGTAGCCACTGGGCCATCGGGGTAGCTTCTT...GCACTTGGGACGTGGAGGTAGGTGGATCACTGCAAGTTTGAGGCTAGCATGGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS-3UTR GCA 90 bp | ATGAACAGTAGAAAAAGGCACACGAGCAGGGTCCAGGAGCACTCCCTCTTACCAACACGGGGACTGCATTaGCAGAACAAACGGCCGCCA | + |
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Preference number: 4 (lower is better) Translates to: MNSRKRHTSRVQEHSLLPTRGLH*QNKRPP Trigger: TGGCGGCCGTTTGTTCTGGCAATGCAGTCCCCGTGT...TGGTAAGAGGGAGTGCTCCTGGACCCTGCTCGTGTGCCTTTTTCTACTGTTCAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS-3UTR CCA 90 bp | TATGCACTACTATATCCAGTCTCCCTAAGTGGAATTCTCCAGTGGCCCCTAAACGGTGCAGGACGCCTCTaGTCAGGCAGCAGGCACAAG | + |
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Preference number: 4 (lower is better) Translates to: YALLYPVSLSGILQWPLNGAGRL*SGSRHK Trigger: CTTGTGCCTGCTGCCTGACCAGAGGCGTCCTGCACC...GTTTAGGGGCCACTGGAGAATTCCACTTAGGGAGACTGGATATAGTAGTGCATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS-3UTR TCA 90 bp | AAACTTGCAGTGATCCACCTACCTCCACGTCCCAAGTGCTGGAGTTATAGGTATGGTCAAAGGTTGGACTaGTGGCCCACAGGGACAAGT | + |
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Preference number: 4 (lower is better) Translates to: KLAVIHLPPRPKCWSYRYGQRLD*WPTGTS Trigger: ACTTGTCCCTGTGGGCCATCAGTCCAACCTTTGACC...ATACCTATAACTCCAGCACTTGGGACGTGGAGGTAGGTGGATCACTGCAAGTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS-3UTR CCA 90 bp | TATGCACTACTATATCCAGTCTCCCTAAGTGGAATTCTCCAGTGGCCCCTAAACACCCCGATGGCCCAGTaGCTACAGTTCCTAGTGTCC | + |
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Preference number: 4 (lower is better) Translates to: YALLYPVSLSGILQWPLNTPMAQ*LQFLVS Trigger: GGACACTAGGAACTGTAGCCACTGGGCCATCGGGGT...GTTTAGGGGCCACTGGAGAATTCCACTTAGGGAGACTGGATATAGTAGTGCATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS-3UTR TCA 90 bp | TGGAGTTATAGGTATGCACTACTATATCCAGTCTCCCTAAGTGGAATTCTCCAGGCCCACAGGGACAAGTaGGAAGCTTTCCTGGGTGCA | + |
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Preference number: 4 (lower is better) Translates to: WSYRYALLYPVSLSGILQAHRDK*EAFLGA Trigger: TGCACCCAGGAAAGCTTCTCACTTGTCCCTGTGGGC...CTGGAGAATTCCACTTAGGGAGACTGGATATAGTAGTGCATACCTATAACTCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS-3UTR TCA 90 bp | ATGAACAGTAGAAAAAGGCACACGAGCAGGGTCCAGGAGCACTCCCTCTTACCAAAAGACCTGGCTAATTaGAAATCTCTGGGGACTCCA | + |
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Preference number: 4 (lower is better) Translates to: MNSRKRHTSRVQEHSLLPKDLAN*KSLGTP Trigger: TGGAGTCCCCAGAGATTTTCAATTAGCCAGGTCTTT...TGGTAAGAGGGAGTGCTCCTGGACCCTGCTCGTGTGCCTTTTTCTACTGTTCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS-3UTR CCA 90 bp | AAGTGCTGGAGTTATAGGTATGCACTACTATATCCAGTCTCCCTAAGTGGAATTGAGACCCACAGGTCATaGAGGCACCGGAGACAGAAG | + |
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Preference number: 4 (lower is better) Translates to: KCWSYRYALLYPVSLSGIETHRS*RHRRQK Trigger: CTTCTGTCTCCGGTGCCTCCATGACCTGTGGGTCTC...AATTCCACTTAGGGAGACTGGATATAGTAGTGCATACCTATAACTCCAGCACTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS-3UTR GCA 90 bp | CTACTATATCCAGTCTCCCTAAGTGGAATTCTCCAGTGGCCCCTAAACAAAGAGTCAGGGAGGTCCGACTaGAAGTCTGTTTTCTTCATC | + |
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Preference number: 4 (lower is better) Translates to: LLYPVSLSGILQWPLNKESGRSD*KSVFFI Trigger: GATGAAGAAAACAGACTTGCAGTCGGACCTCCCTGA...CTCTTTGTTTAGGGGCCACTGGAGAATTCCACTTAGGGAGACTGGATATAGTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS-3UTR CCA 90 bp | AAACTTGCAGTGATCCACCTACCTCCACGTCCCAAGTGCTGGAGTTATAGGTATGAAGGTCACCAGCTTTaGAGAATCCAAGGAATGTTC | + |
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Preference number: 4 (lower is better) Translates to: KLAVIHLPPRPKCWSYRYEGHQL*RIQGMF Trigger: GAACATTCCTTGGATTCTCCAAAGCTGGTGACCTTC...ATACCTATAACTCCAGCACTTGGGACGTGGAGGTAGGTGGATCACTGCAAGTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS-3UTR CCA 90 bp | CTACTATATCCAGTCTCCCTAAGTGGAATTCTCCAGTGGCCCCTAAACAAAGAGCTGTTTTCTTCATCTTaGCCCAAGCAGAGAACTGGC | + |
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Preference number: 4 (lower is better) Translates to: LLYPVSLSGILQWPLNKELFSSS*PKQRTG Trigger: GCCAGTTCTCTGCTTGGGCCAAGATGAAGAAAACAG...CTCTTTGTTTAGGGGCCACTGGAGAATTCCACTTAGGGAGACTGGATATAGTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS-3UTR TCA 90 bp | AAGTGCTGGAGTTATAGGTATGCACTACTATATCCAGTCTCCCTAAGTGGAATTCCAGAAGAGAGGGCCTaGGAACAAAAGACCTGGCTA | + |
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Preference number: 4 (lower is better) Translates to: KCWSYRYALLYPVSLSGIPEERA*EQKTWL Trigger: TAGCCAGGTCTTTTGTTCTCAGGCCCTCTCTTCTGG...AATTCCACTTAGGGAGACTGGATATAGTAGTGCATACCTATAACTCCAGCACTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS-3UTR CCA 90 bp | AAGTGCTGGAGTTATAGGTATGCACTACTATATCCAGTCTCCCTAAGTGGAATTTGGTCTAGTAGCCCTTaGCAGATAATGCAGCTCAGG | + |
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Preference number: 4 (lower is better) Translates to: KCWSYRYALLYPVSLSGIWSSSP*QIMQLR Trigger: CCTGAGCTGCATTATCTGCCAAGGGCTACTAGACCA...AATTCCACTTAGGGAGACTGGATATAGTAGTGCATACCTATAACTCCAGCACTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS-3UTR TCA 90 bp | TGGAGTTATAGGTATGCACTACTATATCCAGTCTCCCTAAGTGGAATTCTCCAGCCTTGCAGTTTCTCCTaGATTTCTTCCAGGTTATGG | + |
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Preference number: 4 (lower is better) Translates to: WSYRYALLYPVSLSGILQPCSFS*ISSRLW Trigger: CCATAACCTGGAAGAAATTCAGGAGAAACTGCAAGG...CTGGAGAATTCCACTTAGGGAGACTGGATATAGTAGTGCATACCTATAACTCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS CCA 90 bp | GGGGCGGGTTCAGGCTCCGAGCCAGCCTCGACCTCCCGCGCCGCTTaGAGGTACTTGTCCACCAGGTCTTGCAGCAGCGGGTTCTTGTGC | + |
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Preference number: 5 (lower is better) Translates to: GAGSGSEPASTSRAA*RYLSTRSCSSGFLC Trigger: GCACAAGAACCCGCTGCTGCAAGACCTGGTGGACAAGTACCTCCAAGCGGCGCGGGAGGTCGAGGCTGGCTCGGAGCCTGAACCCGCCCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS GCA 90 bp | GCCTCGACCTCCCGCGCCGCTTGGAGGTACTTGTCCACCAGGTCTTaGAGCAGCGGGTTCTTGTGCAGCTTGGGCTTTGTCAAGGGACCC | + |
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Preference number: 5 (lower is better) Translates to: ASTSRAAWRYLSTRS*SSGFLCSLGFVKGP Trigger: GGGTCCCTTGACAAAGCCCAAGCTGCACAAGAACCCGCTGCTGCAAGACCTGGTGGACAAGTACCTCCAAGCGGCGCGGGAGGTCGAGGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS CCA 90 bp | AAGCTGTGGCCACAGGGCAGCGTGGTGGGCTGGTCTAGTAGCCCTTaGCAGATAATGCAGCTCAGGTCGTCCTCGCTCAGCCACACGGGG | + |
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Preference number: 5 (lower is better) Translates to: KLWPQGSVVGWSSSP*QIMQLRSSSLSHTG Trigger: CCCCGTGTGGCTGAGCGAGGACGACCTGAGCTGCATTATCTGCCAAGGGCTACTAGACCAGCCCACCACGCTGCCCTGTGGCCACAGCTT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS CCA 90 bp | GTCAGCTCCTGGATAACGTTTGTGGTACTTTTCTGTACTGTCACCTaGGGCGCAGAACGCGGCGCGGGGGCGGGTTCAGGCTCCGAGCCA | + |
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Preference number: 5 (lower is better) Translates to: VSSWITFVVLFCTVT*GAERGAGAGSGSEP Trigger: TGGCTCGGAGCCTGAACCCGCCCCCGCGCCGCGTTCTGCGCCCCAGGTGACAGTACAGAAAAGTACCACAAACGTTATCCAGGAGCTGAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS GCA 90 bp | GCTTGGAGGTACTTGTCCACCAGGTCTTGCAGCAGCGGGTTCTTGTaGAGCTTGGGCTTTGTCAAGGGACCCTTCCGACATATGGGGCAA | + |
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Preference number: 5 (lower is better) Translates to: AWRYLSTRSCSSGFL*SLGFVKGPFRHMGQ Trigger: TTGCCCCATATGTCGGAAGGGTCCCTTGACAAAGCCCAAGCTGCACAAGAACCCGCTGCTGCAAGACCTGGTGGACAAGTACCTCCAAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS CCA 90 bp | ATCCCGTCCCGCTTCATGCCCCAAGAAGCTACCCCGATGGCCCAGTaGCTACAGTTCCTAGTGTCCACTTCCCAGTACTTCTGTCCAGAA | + |
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Preference number: 5 (lower is better) Translates to: IPSRFMPQEATPMAQ*LQFLVSTSQYFCPE Trigger: TTCTGGACAGAAGTACTGGGAAGTGGACACTAGGAACTGTAGCCACTGGGCCATCGGGGTAGCTTCTTGGGGCATGAAGCGGGACGGGAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS-3UTR CAA 90 bp | ATGAACAGTAGAAAAAGGCACACGAGCAGGGTCCAGGAGCACTCCCTCTTACCAGCCGCTTGGAGGTACTaGTCCACCAGGTCTTGCAGC | + |
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Preference number: 5 (lower is better) Translates to: MNSRKRHTSRVQEHSLLPAAWRY*STRSCS Trigger: GCTGCAAGACCTGGTGGACAAGTACCTCCAAGCGGC...TGGTAAGAGGGAGTGCTCCTGGACCCTGCTCGTGTGCCTTTTTCTACTGTTCAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS CCA 90 bp | GCTTTGGAGAATCCAAGGAATGTTCCCCCTCAGAGGAAGAATCCGTaGGTGGGGTGCCTTGTGCATTGTCCTGTCCAGATCCCAAGTTGG | + |
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Preference number: 5 (lower is better) Translates to: ALENPRNVPPQRKNP*VGCLVHCPVQIPSW Trigger: CCAACTTGGGATCTGGACAGGACAATGCACAAGGCACCCCACCCACGGATTCTTCCTCTGAGGGGGAACATTCCTTGGATTCTCCAAAGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS CCA 90 bp | GGAAGATGTCATTTCCTGAACTCGCTCTCTAGGGGGCGCTCTCCCTaGGACACTCCCTTGCAGTTTCTCCTGAATTTCTTCCAGGTTATG | + |
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Preference number: 5 (lower is better) Translates to: GRCHFLNSLSRGRSP*DTPLQFLLNFFQVM Trigger: CATAACCTGGAAGAAATTCAGGAGAAACTGCAAGGGAGTGTCCCAGGGAGAGCGCCCCCTAGAGAGCGAGTTCAGGAAATGACATCTTCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS CCA 90 bp | AGGTGTGCAGATCACCACGAGACACAGTCACTCTCCGGCTATTGTTaGAAACCTCCAGGTTATAGGAGAGGGTCCTCAGGTCAAAGGTTG | + |
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Preference number: 5 (lower is better) Translates to: RCADHHETQSLSGYC*KPPGYRRGSSGQRL Trigger: CAACCTTTGACCTGAGGACCCTCTCCTATAACCTGGAGGTTTCCAACAATAGCCGGAGAGTGACTGTGTCTCGTGGTGATCTGCACACCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS TCA 90 bp | TGTCCTGTCCAGATCCCAAGTTGGGTCTTTGCGTTTGAAGGCTCTTaGCATCGTCTACAAGCTGTCTCACCATGTCAGTCAGCTCCTGGA | + |
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Preference number: 5 (lower is better) Translates to: CPVQIPSWVFAFEGS*HRLQAVSPCQSAPG Trigger: TCCAGGAGCTGACTGACATGGTGAGACAGCTTGTAGACGATGTCAAGAGCCTTCAAACGCAAAGACCCAACTTGGGATCTGGACAGGACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS-3UTR CAA 90 bp | TGGAGTTATAGGTATGCACTACTATATCCAGTCTCCCTAAGTGGAATTCTCCAGTGTGCAGCTTGGGCTTaGTCAAGGGACCCTTCCGAC | + |
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Preference number: 5 (lower is better) Translates to: WSYRYALLYPVSLSGILQCAAWA*SRDPSD Trigger: GTCGGAAGGGTCCCTTGACAAAGCCCAAGCTGCACA...CTGGAGAATTCCACTTAGGGAGACTGGATATAGTAGTGCATACCTATAACTCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS-3UTR CAA 90 bp | TGGAGTTATAGGTATGCACTACTATATCCAGTCTCCCTAAGTGGAATTCTCCAGCTTGTCCACCAGGTCTaGCAGCAGCGGGTTCTTGTG | + |
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Preference number: 5 (lower is better) Translates to: WSYRYALLYPVSLSGILQLVHQV*QQRVLV Trigger: CACAAGAACCCGCTGCTGCAAGACCTGGTGGACAAG...CTGGAGAATTCCACTTAGGGAGACTGGATATAGTAGTGCATACCTATAACTCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS-3UTR CAA 90 bp | AAACTTGCAGTGATCCACCTACCTCCACGTCCCAAGTGCTGGAGTTATAGGTATTCCCAAGTTGGGTCTTaGCGTTTGAAGGCTCTTGAC | + |
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Preference number: 5 (lower is better) Translates to: KLAVIHLPPRPKCWSYRYSQVGS*RLKALD Trigger: GTCAAGAGCCTTCAAACGCAAAGACCCAACTTGGGA...ATACCTATAACTCCAGCACTTGGGACGTGGAGGTAGGTGGATCACTGCAAGTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS-3UTR CAA 90 bp | TATGCACTACTATATCCAGTCTCCCTAAGTGGAATTCTCCAGTGGCCCCTAAACGTTGGGTCTTTGCGTTaGAAGGCTCTTGACATCGTC | + |
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Preference number: 5 (lower is better) Translates to: YALLYPVSLSGILQWPLNVGSLR*KALDIV Trigger: GACGATGTCAAGAGCCTTCAAACGCAAAGACCCAAC...GTTTAGGGGCCACTGGAGAATTCCACTTAGGGAGACTGGATATAGTAGTGCATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS TCA 90 bp | CTTCCAGGTTATGGAGAATCTCCTGAATTTTCTTCTGAGATATACTaGAGGTCACCAGCTTTGGAGAATCCAAGGAATGTTCCCCCTCAG | + |
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Preference number: 5 (lower is better) Translates to: LPGYGESPEFSSEIY*RSPALENPRNVPPQ Trigger: CTGAGGGGGAACATTCCTTGGATTCTCCAAAGCTGGTGACCTTCAGTATATCTCAGAAGAAAATTCAGGAGATTCTCCATAACCTGGAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS-3UTR CAA 90 bp | TGGAGTTATAGGTATGCACTACTATATCCAGTCTCCCTAAGTGGAATTCTCCAGTCTGTTTTCTTCATCTaGGCCCAAGCAGAGAACTGG | + |
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Preference number: 5 (lower is better) Translates to: WSYRYALLYPVSLSGILQSVFFI*AQAENW Trigger: CCAGTTCTCTGCTTGGGCCAAGATGAAGAAAACAGA...CTGGAGAATTCCACTTAGGGAGACTGGATATAGTAGTGCATACCTATAACTCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS CAA 90 bp | GGGGGCGGGTTCAGGCTCCGAGCCAGCCTCGACCTCCCGCGCCGCTaGGAGGTACTTGTCCACCAGGTCTTGCAGCAGCGGGTTCTTGTG | + |
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Preference number: 6 (lower is better) Translates to: GGGFRLRASLDLPRR*EVLVHQVLQQRVLV Trigger: CACAAGAACCCGCTGCTGCAAGACCTGGTGGACAAGTACCTCCAAGCGGCGCGGGAGGTCGAGGCTGGCTCGGAGCCTGAACCCGCCCCC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS CCA 72 bp | TCAGGCTCCGAGCCAGCCTCGACCTCCCGCGCCGCTTaGAGGTACTTGTCCACCAGGTCTTGCAGCAGCGGG | + |
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Preference number: 6 (lower is better) Translates to: SGSEPASTSRAA*RYLSTRSCSSG Trigger: CCCGCTGCTGCAAGACCTGGTGGACAAGTACCTCCAAGCGGCGCGGGAGGTCGAGGCTGGCTCGGAGCCTGA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS CAA 72 bp | TTCAGGCTCCGAGCCAGCCTCGACCTCCCGCGCCGCTaGGAGGTACTTGTCCACCAGGTCTTGCAGCAGCGG | + |
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Preference number: 6 (lower is better) Translates to: FRLRASLDLPRR*EVLVHQVLQQR Trigger: CCGCTGCTGCAAGACCTGGTGGACAAGTACCTCCAAGCGGCGCGGGAGGTCGAGGCTGGCTCGGAGCCTGAA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS CAA 90 bp | TCAGGCTCCGAGCCAGCCTCGACCTCCCGCGCCGCTTGGAGGTACTaGTCCACCAGGTCTTGCAGCAGCGGGTTCTTGTGCAGCTTGGGC | + |
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Preference number: 6 (lower is better) Translates to: SGSEPASTSRAAWRY*STRSCSSGFLCSLG Trigger: GCCCAAGCTGCACAAGAACCCGCTGCTGCAAGACCTGGTGGACAAGTACCTCCAAGCGGCGCGGGAGGTCGAGGCTGGCTCGGAGCCTGA 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS CCA 72 bp | CCACAGGGCAGCGTGGTGGGCTGGTCTAGTAGCCCTTaGCAGATAATGCAGCTCAGGTCGTCCTCGCTCAGC | + |
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Preference number: 6 (lower is better) Translates to: PQGSVVGWSSSP*QIMQLRSSSLS Trigger: GCTGAGCGAGGACGACCTGAGCTGCATTATCTGCCAAGGGCTACTAGACCAGCCCACCACGCTGCCCTGTGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS GCA 72 bp | TCCCGCGCCGCTTGGAGGTACTTGTCCACCAGGTCTTaGAGCAGCGGGTTCTTGTGCAGCTTGGGCTTTGTC | + |
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Preference number: 6 (lower is better) Translates to: SRAAWRYLSTRS*SSGFLCSLGFV Trigger: GACAAAGCCCAAGCTGCACAAGAACCCGCTGCTGCAAGACCTGGTGGACAAGTACCTCCAAGCGGCGCGGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS GCA 72 bp | GATGGCCCACAGGGACAAGTGAGAAGCTTTCCTGGGTaGAGGACGCCTCTGGTCAGGCAGCAGGCACAAGGA | + |
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Preference number: 6 (lower is better) Translates to: DGPQGQVRSFPG*RTPLVRQQAQG Trigger: TCCTTGTGCCTGCTGCCTGACCAGAGGCGTCCTGCACCCAGGAAAGCTTCTCACTTGTCCCTGTGGGCCATC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS CAA 72 bp | GGTCTTGCAGCAGCGGGTTCTTGTGCAGCTTGGGCTTaGTCAAGGGACCCTTCCGACATATGGGGCAAGCCC | + |
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Preference number: 6 (lower is better) Translates to: GLAAAGSCAAWA*SRDPSDIWGKP Trigger: GGGCTTGCCCCATATGTCGGAAGGGTCCCTTGACAAAGCCCAAGCTGCACAAGAACCCGCTGCTGCAAGACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS CAA 90 bp | GCCGCTTGGAGGTACTTGTCCACCAGGTCTTGCAGCAGCGGGTTCTaGTGCAGCTTGGGCTTTGTCAAGGGACCCTTCCGACATATGGGG | + |
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Preference number: 6 (lower is better) Translates to: AAWRYLSTRSCSSGF*CSLGFVKGPFRHMG Trigger: CCCCATATGTCGGAAGGGTCCCTTGACAAAGCCCAAGCTGCACAAGAACCCGCTGCTGCAAGACCTGGTGGACAAGTACCTCCAAGCGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS CAA 90 bp | AGGTACTTGTCCACCAGGTCTTGCAGCAGCGGGTTCTTGTGCAGCTaGGGCTTTGTCAAGGGACCCTTCCGACATATGGGGCAAGCCCAA | + |
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Preference number: 6 (lower is better) Translates to: RYLSTRSCSSGFLCS*GFVKGPFRHMGQAQ Trigger: TTGGGCTTGCCCCATATGTCGGAAGGGTCCCTTGACAAAGCCCAAGCTGCACAAGAACCCGCTGCTGCAAGACCTGGTGGACAAGTACCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS TCA 72 bp | AGGTCAAAGGTTGGACTGATGGCCCACAGGGACAAGTaGGAAGCTTTCCTGGGTGCAGGACGCCTCTGGTCA | + |
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Preference number: 6 (lower is better) Translates to: RSKVGLMAHRDK*EAFLGAGRLWS Trigger: TGACCAGAGGCGTCCTGCACCCAGGAAAGCTTCTCACTTGTCCCTGTGGGCCATCAGTCCAACCTTTGACCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS GCA 72 bp | TCCAGCCACACGCCCACAACCTCAGGGAGGTCCGACTaGAAGTCTGTTTTCTTCATCTTGGCCCAAGCAGAG | + |
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Preference number: 6 (lower is better) Translates to: SSHTPTTSGRSD*KSVFFILAQAE Trigger: CTCTGCTTGGGCCAAGATGAAGAAAACAGACTTGCAGTCGGACCTCCCTGAGGTTGTGGGCGTGTGGCTGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS CCA 72 bp | CAGGGAGGTCCGACTGCAAGTCTGTTTTCTTCATCTTaGCCCAAGCAGAGAACTGGCCAGGCCCTCTCCACT | + |
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Preference number: 6 (lower is better) Translates to: QGGPTASLFSSS*PKQRTGQALST Trigger: AGTGGAGAGGGCCTGGCCAGTTCTCTGCTTGGGCCAAGATGAAGAAAACAGACTTGCAGTCGGACCTCCCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS CAA 72 bp | AGGTACTTGTCCACCAGGTCTTGCAGCAGCGGGTTCTaGTGCAGCTTGGGCTTTGTCAAGGGACCCTTCCGA | + |
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Preference number: 6 (lower is better) Translates to: RYLSTRSCSSGF*CSLGFVKGPFR Trigger: TCGGAAGGGTCCCTTGACAAAGCCCAAGCTGCACAAGAACCCGCTGCTGCAAGACCTGGTGGACAAGTACCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS CAA 72 bp | TCAGGGAGGTCCGACTGCAAGTCTGTTTTCTTCATCTaGGCCCAAGCAGAGAACTGGCCAGGCCCTCTCCAC | + |
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Preference number: 6 (lower is better) Translates to: SGRSDCKSVFFI*AQAENWPGPLH Trigger: GTGGAGAGGGCCTGGCCAGTTCTCTGCTTGGGCCAAGATGAAGAAAACAGACTTGCAGTCGGACCTCCCTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS GCA 72 bp | TACTTGTCCACCAGGTCTTGCAGCAGCGGGTTCTTGTaGAGCTTGGGCTTTGTCAAGGGACCCTTCCGACAT | + |
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Preference number: 6 (lower is better) Translates to: YLSTRSCSSGFL*SLGFVKGPFRH Trigger: ATGTCGGAAGGGTCCCTTGACAAAGCCCAAGCTGCACAAGAACCCGCTGCTGCAAGACCTGGTGGACAAGTA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS CAA 90 bp | TTCCTGAACTCGCTCTCTAGGGGGCGCTCTCCCTGGGACACTCCCTaGCAGTTTCTCCTGAATTTCTTCCAGGTTATGGAGAATCTCCTG | + |
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Preference number: 6 (lower is better) Translates to: FLNSLSRGRSPWDTP*QFLLNFFQVMENLL Trigger: CAGGAGATTCTCCATAACCTGGAAGAAATTCAGGAGAAACTGCAAGGGAGTGTCCCAGGGAGAGCGCCCCCTAGAGAGCGAGTTCAGGAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS CCA 72 bp | GATCACCACGAGACACAGTCACTCTCCGGCTATTGTTaGAAACCTCCAGGTTATAGGAGAGGGTCCTCAGGT | + |
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Preference number: 6 (lower is better) Translates to: DHHETQSLSGYC*KPPGYRRGSSG Trigger: ACCTGAGGACCCTCTCCTATAACCTGGAGGTTTCCAACAATAGCCGGAGAGTGACTGTGTCTCGTGGTGATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS CAA 72 bp | TTGTGCATTGTCCTGTCCAGATCCCAAGTTGGGTCTTaGCGTTTGAAGGCTCTTGACATCGTCTACAAGCTG | + |
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Preference number: 6 (lower is better) Translates to: LCIVLSRSQVGS*RLKALDIVYKL Trigger: CAGCTTGTAGACGATGTCAAGAGCCTTCAAACGCAAAGACCCAACTTGGGATCTGGACAGGACAATGCACAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS TCA 72 bp | TCCACTTCCCAGTACTTCTGTCCAGAAGAGAGGGCCTaGGAACAAAAGACCTGGCTAATTGAAAATCTCTGG | + |
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Preference number: 6 (lower is better) Translates to: STSQYFCPEERA*EQKTWLIENLW Trigger: CCAGAGATTTTCAATTAGCCAGGTCTTTTGTTCTCAGGCCCTCTCTTCTGGACAGAAGTACTGGGAAGTGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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| CDS TCA 72 bp | TATGGAGAATCTCCTGAATTTTCTTCTGAGATATACTaGAGGTCACCAGCTTTGGAGAATCCAAGGAATGTT | + |
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Preference number: 6 (lower is better) Translates to: YGESPEFSSEIY*RSPALENPRNV Trigger: AACATTCCTTGGATTCTCCAAAGCTGGTGACCTTCAGTATATCTCAGAAGAAAATTCAGGAGATTCTCCATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017839.3 |
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