RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RNF130 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020376

Ensembl transcript IDs: ENSMUST00000054684.14, ENSMUST00000102776.5, ENSMUST00000238748.2

Found 257 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGGCTGCACTCTTCCCTTCCACCCGTGCCCAGGGAACTGTCCCCTTaGGGCTCACCCTCATCTCACCTGCTCTCCCTCCGCAGAGTGCTG +
Preference number: 1 (lower is better)
Translates to: RLHSSLPPVPRELSP*GSPSSHLLSLRRVL
Trigger: CAGCACTCTGCGGAGGGAGAGCAGGTGAGATGAGGGTGAGCCTCAAGGGGACAGTTCCCTGGGCACGGGTGGAAGGGAAGAGTGCAGCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR GCA 90 bp TGCACAGCGTCCCTCTCATCCCTCCAGGTGTCCCACCTTGCCGTCTaGCTAAGGCATGTTCTGAGCTTCCTCACCCCAAGTTACCTGTGC +
Preference number: 1 (lower is better)
Translates to: CTASLSSLQVSHLAV*LRHVLSFLTPSYLC
Trigger: GCACAGGTAACTTGGGGTGAGGAAGCTCAGAACATGCCTTAGGCAGACGGCAAGGTGGGACACCTGGAGGGATGAGAGGGACGCTGTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR TCA 90 bp CCCAAACAGACCCTAGAGCTTCCCTGGGCCCAGAAGCGGAGATGGTaGCTTCAGCCCAAGGAACCTGCCTTACTCCTGTTGCTCCTCATG +
Preference number: 1 (lower is better)
Translates to: PKQTLELPWAQKRRW*LQPKEPALLLLLLM
Trigger: CATGAGGAGCAACAGGAGTAAGGCAGGTTCCTTGGGCTGAAGTCACCATCTCCGCTTCTGGGCCCAGGGAAGCTCTAGGGTCTGTTTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR GCA 90 bp TCCGCAGAGTGCTGCCAACATGCCAGTTTCCAGGACAGTCAAATATaGCCAACCACTGAAGGGCTTGAGTGCCGAGATGCACCCCCAGCC +
Preference number: 1 (lower is better)
Translates to: SAECCQHASFQDSQI*PTTEGLECRDAPPA
Trigger: GGCTGGGGGTGCATCTCGGCACTCAAGCCCTTCAGTGGTTGGGCATATTTGACTGTCCTGGAAACTGGCATGTTGGCAGCACTCTGCGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR GCA 90 bp GGTCCCAAGCCAACCGCTAGGATACCAGCCCCAGCAGGGCCCATCTaGCTTCTGCCTCTCACACAGCCTGCAGCTTATAGTGTTCTTTTC +
Preference number: 1 (lower is better)
Translates to: GPKPTARIPAPAGPI*LLPLTQPAAYSVLF
Trigger: GAAAAGAACACTATAAGCTGCAGGCTGTGTGAGAGGCAGAAGGCAGATGGGCCCTGCTGGGGCTGGTATCCTAGCGGTTGGCTTGGGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR GCA 90 bp AGTCCAGTGCACAGCGTCCCTCTCATCCCTCCAGGTGTCCCACCTTaGCGTCTGCCTAAGGCATGTTCTGAGCTTCCTCACCCCAAGTTA +
Preference number: 1 (lower is better)
Translates to: SPVHSVPLIPPGVPP*RLPKACSELPHPKL
Trigger: TAACTTGGGGTGAGGAAGCTCAGAACATGCCTTAGGCAGACGGCAAGGTGGGACACCTGGAGGGATGAGAGGGACGCTGTGCACTGGACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CCA 90 bp ACAGCAAGGCTCCTGAGGTGCCCATGCTCAGTGGTCAGCTCTGGGTaGTACCACGAGGCTCACTCGCGCAATAATGCTGCCATCAAACCT +
Preference number: 1 (lower is better)
Translates to: TARLLRCPCSVVSSG*YHEAHSRNNAAIKP
Trigger: AGGTTTGATGGCAGCATTATTGCGCGAGTGAGCCTCGTGGTACCACCCAGAGCTGACCACTGAGCATGGGCACCTCAGGAGCCTTGCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR TCA 90 bp TGGTACCTAGCCCAGTTTCTCTCTGGCTGGCACCATCATTGGCACTaGGCATCTACTTCTGTCAGGGTGTGCATGCGCGCCCAGTGCACA +
Preference number: 1 (lower is better)
Translates to: WYLAQFLSGWHHHWH*ASTSVRVCMRAQCT
Trigger: TGTGCACTGGGCGCGCATGCACACCCTGACAGAAGTAGATGCTCAGTGCCAATGATGGTGCCAGCCAGAGAGAAACTGGGCTAGGTACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR TCA 90 bp CCTCGGGAGAGGAGTGAGGATGTGAGGGAGGTGCTAACGGCTGGGTaGGGGCTCCACCAAGGCCTGAGAAAGATTCTACTTTTAGGCTGT +
Preference number: 1 (lower is better)
Translates to: PRERSEDVREVLTAG*GLHQGLRKILLLGC
Trigger: ACAGCCTAAAAGTAGAATCTTTCTCAGGCCTTGGTGGAGCCCTCACCCAGCCGTTAGCACCTCCCTCACATCCTCACTCCTCTCCCGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR GCA 90 bp AGCTTTCTGGGAATACCCATAAAGAAGGGAGGAGCCCACCAACCCTaGCAGAGCCCAGGAGTTCCTTGGCTACAAAGGGGCTTCCTGACC +
Preference number: 1 (lower is better)
Translates to: SFLGIPIKKGGAHQP*QSPGVPWLQRGFLT
Trigger: GGTCAGGAAGCCCCTTTGTAGCCAAGGAACTCCTGGGCTCTGGCAGGGTTGGTGGGCTCCTCCCTTCTTTATGGGTATTCCCAGAAAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CCA 90 bp TGTATTCTAGCTGGGTCAGCAAGCCAGCCAGGGCTGTCAGGGAGGTaGCATGTGCTGTGGCTGCCCCTAAAAGGTCTAGGTGTAGAACCA +
Preference number: 1 (lower is better)
Translates to: CILAGSASQPGLSGR*HVLWLPLKGLGVEP
Trigger: TGGTTCTACACCTAGACCTTTTAGGGGCAGCCACAGCACATGCCACCTCCCTGACAGCCCTGGCTGGCTTGCTGACCCAGCTAGAATACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR GCA 90 bp CTTGAGGCTCACCCTCATCTCACCTGCTCTCCCTCCGCAGAGTGCTaGCAACATGCCAGTTTCCAGGACAGTCAAATATGCCCAACCACT +
Preference number: 1 (lower is better)
Translates to: LEAHPHLTCSPSAEC*QHASFQDSQICPTT
Trigger: AGTGGTTGGGCATATTTGACTGTCCTGGAAACTGGCATGTTGGCAGCACTCTGCGGAGGGAGAGCAGGTGAGATGAGGGTGAGCCTCAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR GCA 90 bp AGCCAACCGCTAGGATACCAGCCCCAGCAGGGCCCATCTGCCTTCTaGCTCTCACACAGCCTGCAGCTTATAGTGTTCTTTTCCCAAACA +
Preference number: 1 (lower is better)
Translates to: SQPLGYQPQQGPSAF*LSHSLQLIVFFSQT
Trigger: TGTTTGGGAAAAGAACACTATAAGCTGCAGGCTGTGTGAGAGGCAGAAGGCAGATGGGCCCTGCTGGGGCTGGTATCCTAGCGGTTGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR GCA 90 bp AGTGTCCACCATGCTGGCCACAGCATCCTCTTCTGTAAGTCTGGTTaGCAGCGCTCCAGTGTTTCTTTCATGTTGGTGCTGAGGCTGGCA +
Preference number: 1 (lower is better)
Translates to: SVHHAGHSILFCKSG*QRSSVSFMLVLRLA
Trigger: TGCCAGCCTCAGCACCAACATGAAAGAAACACTGGAGCGCTGGCAACCAGACTTACAGAAGAGGATGCTGTGGCCAGCATGGTGGACACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR GCA 90 bp CAAGGAGTCTGCAAGAGCAGCTTTCCCAACTACTTTGCTTTCCCCTaGTGTTTCCAGGAACACCAGGCAAGCAAGGTCCTAACACAGGCA +
Preference number: 1 (lower is better)
Translates to: QGVCKSSFPNYFAFP*CFQEHQASKVLTQA
Trigger: TGCCTGTGTTAGGACCTTGCTTGCCTGGTGTTCCTGGAAACAGCAGGGGAAAGCAAAGTAGTTGGGAAAGCTGCTCTTGCAGACTCCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR TCA 90 bp GTCTCTCGTGCCTCAGAGCAGATGAGAAGTAGAGGCTCAGCTTCATaGTGGATTGGCTTTCAGGGATGTGTCTTACGAGGGAACAACCAG +
Preference number: 1 (lower is better)
Translates to: VSRASEQMRSRGSAS*WIGFQGCVLRGNNQ
Trigger: CTGGTTGTTCCCTCGTAAGACACATCCCTGAAAGCCAATCCATCATGAAGCTGAGCCTCTACTTCTCATCTGCTCTGAGGCACGAGAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CCA 90 bp TCCAGTGTTTCTTTCATGTTGGTGCTGAGGCTGGCAGGATGGCACTaGATTGGACAATCAAGATGGAGAAGGAGGAGGCCCCATTTGGTA +
Preference number: 1 (lower is better)
Translates to: SSVSFMLVLRLAGWH*IGQSRWRRRRPHLV
Trigger: TACCAAATGGGGCCTCCTCCTTCTCCATCTTGATTGTCCAATCCAGTGCCATCCTGCCAGCCTCAGCACCAACATGAAAGAAACACTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CCA 90 bp CAGGCCAGTCAGCTGTCCTTTCTCCCTGAAGTAATGGGACCAGAGTaGCCCCTCCACAAGGAAGCTAAATATCTCAAAGGCTTAAACCTC +
Preference number: 1 (lower is better)
Translates to: QASQLSFLPEVMGPE*PLHKEAKYLKGLNL
Trigger: GAGGTTTAAGCCTTTGAGATATTTAGCTTCCTTGTGGAGGGGCCACTCTGGTCCCATTACTTCAGGGAGAAAGGACAGCTGACTGGCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CCA 90 bp GAGGGGAACAAAGGTGGGACCCTGGATGGATACATTCATTACTTCTaGAGACACTCTGGGGACTTTATACCTGGATGTCCAGGCCAGTCA +
Preference number: 1 (lower is better)
Translates to: EGNKGGTLDGYIHYF*RHSGDFIPGCPGQS
Trigger: TGACTGGCCTGGACATCCAGGTATAAAGTCCCCAGAGTGTCTCCAGAAGTAATGAATGTATCCATCCAGGGTCCCACCTTTGTTCCCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR TCA 90 bp TCAGGAGAAGGGGGTCAACTTGGATATCTGGAGAGCTATTCTGAGTaGATCCCTTCACAGGAACTGCCTCCTTGGCTGTTCTACAGTGAC +
Preference number: 1 (lower is better)
Translates to: SGEGGQLGYLESYSE*IPSQELPPWLFYSD
Trigger: GTCACTGTAGAACAGCCAAGGAGGCAGTTCCTGTGAAGGGATTCACTCAGAATAGCTCTCCAGATATCCAAGTTGACCCCCTTCTCCTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR GCA 90 bp CAGATAGATACAAGGAGTCTGCAAGAGCAGCTTTCCCAACTACTTTaGTTTCCCCTGCTGTTTCCAGGAACACCAGGCAAGCAAGGTCCT +
Preference number: 1 (lower is better)
Translates to: QIDTRSLQEQLSQLL*FPLLFPGTPGKQGP
Trigger: AGGACCTTGCTTGCCTGGTGTTCCTGGAAACAGCAGGGGAAAGCAAAGTAGTTGGGAAAGCTGCTCTTGCAGACTCCTTGTATCTATCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR GCA 90 bp GTGGGCTTGTGGGTGGCCAACATGTTCCTTCCAGGTGCATGTACCTaGTCAGAAAGTGGAGTTGAGATGGAGAGAAATGACATATGTCAG +
Preference number: 1 (lower is better)
Translates to: VGLWVANMFLPGACT*SESGVEMERNDICQ
Trigger: CTGACATATGTCATTTCTCTCCATCTCAACTCCACTTTCTGAGCAGGTACATGCACCTGGAAGGAACATGTTGGCCACCCACAAGCCCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CCA 90 bp ATGGTAGAGCCTGGCTTTCCCAAGAGGGGAACAAAGGTGGGACCCTaGATGGATACATTCATTACTTCTGGAGACACTCTGGGGACTTTA +
Preference number: 1 (lower is better)
Translates to: MVEPGFPKRGTKVGP*MDTFITSGDTLGTL
Trigger: TAAAGTCCCCAGAGTGTCTCCAGAAGTAATGAATGTATCCATCCAGGGTCCCACCTTTGTTCCCCTCTTGGGAAAGCCAGGCTCTACCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR TCA 90 bp CCTACAGTGAAGTCGCACATTGCATCAATGAGCACTCTTGCTATCTaGATACTTGATGTGTGCTCCTTCTGCCGCAAACCACCCACTGGT +
Preference number: 1 (lower is better)
Translates to: PTVKSHIASMSTLAI*ILDVCSFCRKPPTG
Trigger: ACCAGTGGGTGGTTTGCGGCAGAAGGAGCACACATCAAGTATTCAGATAGCAAGAGTGCTCATTGATGCAATGTGCGACTTCACTGTAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR GCA 90 bp CAGGGGCACCTGAGGCATCTTAGGATCTTGAGGGATGTTACAAGATaGTGTGACAGAGAAGAAGCCACACGTGGGAAGATGAAATGTATG +
Preference number: 1 (lower is better)
Translates to: QGHLRHLRILRDVTR*CDREEATRGKMKCM
Trigger: CATACATTTCATCTTCCCACGTGTGGCTTCTTCTCTGTCACAGCATCTTGTAACATCCCTCAAGATCCTAAGATGCCTCAGGTGCCCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR GCA 90 bp TTGGATATCTGGAGAGCTATTCTGAGTGAATCCCTTCACAGGAACTaGCTCCTTGGCTGTTCTACAGTGACCACGTGTCCCAGTTTTTCC +
Preference number: 1 (lower is better)
Translates to: LDIWRAILSESLHRN*LLGCSTVTTCPSFS
Trigger: GGAAAAACTGGGACACGTGGTCACTGTAGAACAGCCAAGGAGGCAGTTCCTGTGAAGGGATTCACTCAGAATAGCTCTCCAGATATCCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CCA 90 bp TTGGTGCTGAGGCTGGCAGGATGGCACTGGATTGGACAATCAAGATaGAGAAGGAGGAGGCCCCATTTGGTATTTAATAGTAGGATGTTG +
Preference number: 1 (lower is better)
Translates to: LVLRLAGWHWIGQSR*RRRRPHLVFNSRML
Trigger: CAACATCCTACTATTAAATACCAAATGGGGCCTCCTCCTTCTCCATCTTGATTGTCCAATCCAGTGCCATCCTGCCAGCCTCAGCACCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CCA 90 bp CAGCTCTGGAAAACACAGGTGACTGTTTTTATCCCAGGGCTCACCTaGCCTGTCCTCATCAAAGGTCAGCTTTCTGGGAATACCCATAAA +
Preference number: 1 (lower is better)
Translates to: QLWKTQVTVFIPGLT*PVLIKGQLSGNTHK
Trigger: TTTATGGGTATTCCCAGAAAGCTGACCTTTGATGAGGACAGGCCAGGTGAGCCCTGGGATAAAAACAGTCACCTGTGTTTTCCAGAGCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR TCA 90 bp ATTTTCAGGAGAAGGGGGTCAACTTGGATATCTGGAGAGCTATTCTaGGTGAATCCCTTCACAGGAACTGCCTCCTTGGCTGTTCTACAG +
Preference number: 1 (lower is better)
Translates to: IFRRRGSTWISGELF*VNPFTGTASLAVLQ
Trigger: CTGTAGAACAGCCAAGGAGGCAGTTCCTGTGAAGGGATTCACTCAGAATAGCTCTCCAGATATCCAAGTTGACCCCCTTCTCCTGAAAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR TCA 90 bp CCAGTTAGTAAGTCAGGGTCAGCAACCTTTGCTTTAATGCCTTTCTaGCCACATATTTTGGCATCTCAGTCTCTCGTGCCTCAGAGCAGA +
Preference number: 1 (lower is better)
Translates to: PVSKSGSATFALMPF*PHILASQSLVPQSR
Trigger: TCTGCTCTGAGGCACGAGAGACTGAGATGCCAAAATATGTGGTCAGAAAGGCATTAAAGCAAAGGTTGCTGACCCTGACTTACTAACTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR TCA 90 bp AAGGTGCTTGTTTTAAGCTGTGGGTATCAAGACAGTCGCCCTGTGTaGATGATTCCTTATTCTCACCTCCTCACGCTGCCTCTGAGTTTA +
Preference number: 1 (lower is better)
Translates to: KVLVLSCGYQDSRPV*MIPYSHLLTLPLSL
Trigger: TAAACTCAGAGGCAGCGTGAGGAGGTGAGAATAAGGAATCATTCACACAGGGCGACTGTCTTGATACCCACAGCTTAAAACAAGCACCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR GCA 90 bp CACAATCATTTCTCTACATCAGAGTCTCCAATAGCCTTTTCTGTGTaGTGTACATCCCAGTCAGTGGTACCTAGCCCAGTTTCTCTCTGG +
Preference number: 1 (lower is better)
Translates to: HNHFSTSESPIAFSV*CTSQSVVPSPVSLW
Trigger: CCAGAGAGAAACTGGGCTAGGTACCACTGACTGGGATGTACAGCACACAGAAAAGGCTATTGGAGACTCTGATGTAGAGAAATGATTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CCA 90 bp TGTTCCTTCCAGGTGCATGTACCTGCTCAGAAAGTGGAGTTGAGATaGAGAGAAATGACATATGTCAGCATCAAATGTTTTGGGGATGCT +
Preference number: 1 (lower is better)
Translates to: CSFQVHVPAQKVELR*REMTYVSIKCFGDA
Trigger: AGCATCCCCAAAACATTTGATGCTGACATATGTCATTTCTCTCCATCTCAACTCCACTTTCTGAGCAGGTACATGCACCTGGAAGGAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CCA 90 bp GGCACTGGATTGGACAATCAAGATGGAGAAGGAGGAGGCCCCATTTaGTATTTAATAGTAGGATGTTGGTTTGCACTTCCCAATAAAACA +
Preference number: 1 (lower is better)
Translates to: GTGLDNQDGEGGGPI*YLIVGCWFALPNKT
Trigger: TGTTTTATTGGGAAGTGCAAACCAACATCCTACTATTAAATACCAAATGGGGCCTCCTCCTTCTCCATCTTGATTGTCCAATCCAGTGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR TCA 90 bp CCAGTTTTAAGTTCAGCCGTTTACTTTCTTGACATTTATGAGCAGTaGGCCCTTGTTAGGAAGACCCCTGATGTGAAATCACAGTCTTGT +
Preference number: 1 (lower is better)
Translates to: PVLSSAVYFLDIYEQ*ALVRKTPDVKSQSC
Trigger: ACAAGACTGTGATTTCACATCAGGGGTCTTCCTAACAAGGGCTCACTGCTCATAAATGTCAAGAAAGTAAACGGCTGAACTTAAAACTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR GCA 90 bp GCAAATTCCACACATACAGGTGTACACTATTGGCATAGAGGTTCATaGCAGACAATTTCACTACTTAATTATACTTACATCAACCATGTG +
Preference number: 1 (lower is better)
Translates to: ANSTHTGVHYWHRGS*QTISLLNYTYINHV
Trigger: CACATGGTTGATGTAAGTATAATTAAGTAGTGAAATTGTCTGGCATGAACCTCTATGCCAATAGTGTACACCTGTATGTGTGGAATTTGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CCA 90 bp GAAACGGTTATATTAGCAAATTCCACACATACAGGTGTACACTATTaGCATAGAGGTTCATGCCAGACAATTTCACTACTTAATTATACT +
Preference number: 1 (lower is better)
Translates to: ETVILANSTHTGVHY*HRGSCQTISLLNYT
Trigger: AGTATAATTAAGTAGTGAAATTGTCTGGCATGAACCTCTATGCCAATAGTGTACACCTGTATGTGTGGAATTTGCTAATATAACCGTTTC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR TCA 90 bp CGTCTCTACCCAGACTTGGTAGGCTGCACTCTTCCCTTCCACCCGTGCCCAGGGCTTTCATGTTGGTGCTaGGGCTGGCAGGATGGCACT +
Preference number: 2 (lower is better)
Translates to: RLYPDLVGCTLPFHPCPGLSCWC*GWQDGT
Trigger: AGTGCCATCCTGCCAGCCTCAGCACCAACATGAAAG...CCCTGGGCACGGGTGGAAGGGAAGAGTGCAGCCTACCAAGTCTGGGTAGAGACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR CCA 90 bp GATGTGACCTGTAAATACTGGAATCTGCAGAGAGCCGAGGGGACAGCCAGCCAGCACCTCTCACAGGGCTaGGGAGGGGAAGACGCAGGG +
Preference number: 2 (lower is better)
Translates to: DVTCKYWNLQRAEGTASQHLSQG*GGEDAG
Trigger: CCCTGCGTCTTCCCCTCCCCAGCCCTGTGAGAGGTG...CTGGCTGGCTGTCCCCTCGGCTCTCTGCAGATTCCAGTATTTACAGGTCACATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR GCA 90 bp CGTCTCTACCCAGACTTGGTAGGCTGCACTCTTCCCTTCCACCCGTGCCCAGGGCTCCTGGAAGGAAGCTaGTATCCTCTGTACTCCCAG +
Preference number: 2 (lower is better)
Translates to: RLYPDLVGCTLPFHPCPGLLEGS*YPLYSQ
Trigger: CTGGGAGTACAGAGGATAGCAGCTTCCTTCCAGGAG...CCCTGGGCACGGGTGGAAGGGAAGAGTGCAGCCTACCAAGTCTGGGTAGAGACG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR GCA 90 bp CCTCTCATCCCTCCAGGTGTCCCACCTTGCCGTCTGCCTAAGGCATGTTCTGAGCCCTCCGCAGAGTGCTaGCAACATGCCAGTTTCCAG +
Preference number: 2 (lower is better)
Translates to: PLIPPGVPPCRLPKACSEPSAEC*QHASFQ
Trigger: CTGGAAACTGGCATGTTGGCAGCACTCTGCGGAGGG...CTCAGAACATGCCTTAGGCAGACGGCAAGGTGGGACACCTGGAGGGATGAGAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR CCA 90 bp CCTCTGTACTCCCAGAGCACATGGCCCCCAACAAAGACGCCAATGACCTTCCGGCGCACCATTAACCGCTaGCCCCACCTCTTCTCTGGA +
Preference number: 2 (lower is better)
Translates to: PLYSQSTWPPTKTPMTFRRTINR*PHLFSG
Trigger: TCCAGAGAAGAGGTGGGGCCAGCGGTTAATGGTGCG...CCGGAAGGTCATTGGCGTCTTTGTTGGGGGCCATGTGCTCTGGGAGTACAGAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR TCA 90 bp GAGGAAAGTGTATCGAGCCTAGGAGGACTGCAGGAGGATAATCACAGGAGGAGCCCTGGGTATCCAGGGTaGCTCCGTGGCATGTCCCCT +
Preference number: 2 (lower is better)
Translates to: EESVSSLGGLQEDNHRRSPGYPG*LRGMSP
Trigger: AGGGGACATGCCACGGAGTCACCCTGGATACCCAGG...GCTCCTCCTGTGATTATCCTCCTGCAGTCCTCCTAGGCTCGATACACTTTCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR CCA 90 bp CCTCTCATCCCTCCAGGTGTCCCACCTTGCCGTCTGCCTAAGGCATGTTCTGAGCTAAGATGGCAGCTGTaGGCTTGTGGGTGGCCAACA +
Preference number: 2 (lower is better)
Translates to: PLIPPGVPPCRLPKACSELRWQL*ACGWPT
Trigger: TGTTGGCCACCCACAAGCCCACAGCTGCCATCTTAG...CTCAGAACATGCCTTAGGCAGACGGCAAGGTGGGACACCTGGAGGGATGAGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR TCA 90 bp CCTCTCATCCCTCCAGGTGTCCCACCTTGCCGTCTGCCTAAGGCATGTTCTGAGCCAATAAAAGTGTCATaGTGGGAGCCTGTCCCCCTC +
Preference number: 2 (lower is better)
Translates to: PLIPPGVPPCRLPKACSEPIKVS*WEPVPL
Trigger: GAGGGGGACAGGCTCCCATCATGACACTTTTATTGG...CTCAGAACATGCCTTAGGCAGACGGCAAGGTGGGACACCTGGAGGGATGAGAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR TCA 90 bp GAGCACATGGCCCCCAACAAAGACGCCAATGACCTTCCGGACAAAGACAGGACACCAAACACTTCCACCTaGGCCTGTGACCCTGGGAGT +
Preference number: 2 (lower is better)
Translates to: EHMAPNKDANDLPDKDRTPNTST*ACDPGS
Trigger: ACTCCCAGGGTCACAGGCTCAGGTGGAAGTGTTTGG...TGTCCTGTCTTTGTCCGGAAGGTCATTGGCGTCTTTGTTGGGGGCCATGTGCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR TCA 90 bp CGTCTCTACCCAGACTTGGTAGGCTGCACTCTTCCCTTCCACCCGTGCCCAGGGCCTCTCAAGTCTTCATaGCTACTCTGTCTTCACTCC +
Preference number: 2 (lower is better)
Translates to: RLYPDLVGCTLPFHPCPGPLKSS*LLCLHS
Trigger: GGAGTGAAGACAGAGTAGTCATGAAGACTTGAGAGG...CCCTGGGCACGGGTGGAAGGGAAGAGTGCAGCCTACCAAGTCTGGGTAGAGACG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR CCA 90 bp AAGCAAGGTCCTAACACAGGCACCTCAGTCCCAGCATTCCTTCTGGTCCTTTTCAGACTCTGGGCCCCATaGCCTGTGTCCTCCCAGCTC +
Preference number: 2 (lower is better)
Translates to: KQGPNTGTSVPAFLLVLFRLWAP*PVSSQL
Trigger: GAGCTGGGAGGACACAGGCCATGGGGCCCAGAGTCT...GAAAAGGACCAGAAGGAATGCTGGGACTGAGGTGCCTGTGTTAGGACCTTGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR CCA 90 bp CGTCTCTACCCAGACTTGGTAGGCTGCACTCTTCCCTTCCACCCGTGCCCAGGGCCTTATCATAGCTCCTaGAAGGAAGCTGCTATCCTC +
Preference number: 2 (lower is better)
Translates to: RLYPDLVGCTLPFHPCPGPYHSS*KEAAIL
Trigger: GAGGATAGCAGCTTCCTTCCAGGAGCTATGATAAGG...CCCTGGGCACGGGTGGAAGGGAAGAGTGCAGCCTACCAAGTCTGGGTAGAGACG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR GCA 90 bp CCTCTGTACTCCCAGAGCACATGGCCCCCAACAAAGACGCCAATGACCTTCCGGGTGGGACTGTTCATCTaGAGGCTTTCCTGTGCATGT +
Preference number: 2 (lower is better)
Translates to: PLYSQSTWPPTKTPMTFRVGLFI*RLSCAC
Trigger: ACATGCACAGGAAAGCCTGCAGATGAACAGTCCCAC...CCGGAAGGTCATTGGCGTCTTTGTTGGGGGCCATGTGCTCTGGGAGTACAGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR GCA 90 bp CGTGCCCAGGGAACTGTCCCCTTGAGGCTCACCCTCATCTCACCTGCTCTCCCTAGGGATGTTACAAGATaGTGTGACAGAGAAGAAGCC +
Preference number: 2 (lower is better)
Translates to: RAQGTVPLRLTLISPALPRDVTR*CDREEA
Trigger: GGCTTCTTCTCTGTCACAGCATCTTGTAACATCCCT...AGGGAGAGCAGGTGAGATGAGGGTGAGCCTCAAGGGGACAGTTCCCTGGGCACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR GCA 90 bp ATACTTGATGTGTGCTCCTTCTGCCGCAAACCACCCACTGGTGAGAGGAAGTCCCCAGACTTGGTAGGCTaGACTCTTCCCTTCCACCCG +
Preference number: 2 (lower is better)
Translates to: ILDVCSFCRKPPTGERKSPDLVG*TLPFHP
Trigger: CGGGTGGAAGGGAAGAGTGCAGCCTACCAAGTCTGG...GGACTTCCTCTCACCAGTGGGTGGTTTGCGGCAGAAGGAGCACACATCAAGTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR CCA 90 bp ATACTTGATGTGTGCTCCTTCTGCCGCAAACCACCCACTGGTGAGAGGAAGTCCCTCAGTGGTCAGCTCTaGGTGGTACCACGAGGCTCA +
Preference number: 2 (lower is better)
Translates to: ILDVCSFCRKPPTGERKSLSGQL*VVPRGS
Trigger: TGAGCCTCGTGGTACCACCCAGAGCTGACCACTGAG...GGACTTCCTCTCACCAGTGGGTGGTTTGCGGCAGAAGGAGCACACATCAAGTAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR CCA 90 bp GCCTCTCAAGTCTTCATGACTACTCTGTCTTCACTCCGGGTGCACCAGTCAGATGTGTCCTCCCAGCTCTaGAGGACAACAGGAGGTCGG +
Preference number: 2 (lower is better)
Translates to: ASQVFMTTLSSLRVHQSDVSSQL*RTTGGR
Trigger: CCGACCTCCTGTTGTCCTCCAGAGCTGGGAGGACAC...ATCTGACTGGTGCACCCGGAGTGAAGACAGAGTAGTCATGAAGACTTGAGAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR CCA 90 bp CGTCTCTACCCAGACTTGGTAGGCTGCACTCTTCCCTTCCACCCGTGCCCAGGGAGGATGGCACTGGATTaGACAATCAAGATGGAGAAG +
Preference number: 2 (lower is better)
Translates to: RLYPDLVGCTLPFHPCPGRMALD*TIKMEK
Trigger: CTTCTCCATCTTGATTGTCCAATCCAGTGCCATCCT...CCCTGGGCACGGGTGGAAGGGAAGAGTGCAGCCTACCAAGTCTGGGTAGAGACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR CCA 90 bp CCTCTGTACTCCCAGAGCACATGGCCCCCAACAAAGACGCCAATGACCTTCCGGGTCATTCTGGATGTGTaGGAAGAGCACACATGTCCC +
Preference number: 2 (lower is better)
Translates to: PLYSQSTWPPTKTPMTFRVILDV*EEHTCP
Trigger: GGGACATGTGTGCTCTTCCCACACATCCAGAATGAC...CCGGAAGGTCATTGGCGTCTTTGTTGGGGGCCATGTGCTCTGGGAGTACAGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR CCA 90 bp GATGTGACCTGTAAATACTGGAATCTGCAGAGAGCCGAGGGGACAGCCAGCCAGTACTCCCAGAGCACATaGCCCCCAACAAAGACGCCA +
Preference number: 2 (lower is better)
Translates to: DVTCKYWNLQRAEGTASQYSQST*PPTKTP
Trigger: TGGCGTCTTTGTTGGGGGCCATGTGCTCTGGGAGTA...CTGGCTGGCTGTCCCCTCGGCTCTCTGCAGATTCCAGTATTTACAGGTCACATC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR TCA 90 bp GATGTGACCTGTAAATACTGGAATCTGCAGAGAGCCGAGGGGACAGCCAGCCAGGACAAAGCAGATGACTaGTCCTGTGACGGCAGACTC +
Preference number: 2 (lower is better)
Translates to: DVTCKYWNLQRAEGTASQDKADD*SCDGRL
Trigger: GAGTCTGCCGTCACAGGATCAGTCATCTGCTTTGTC...CTGGCTGGCTGTCCCCTCGGCTCTCTGCAGATTCCAGTATTTACAGGTCACATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR TCA 90 bp GAGGAAAGTGTATCGAGCCTAGGAGGACTGCAGGAGGATAATCACAGGAGGAGCACAGCCCTCCCATTCTaGACACTGGAGGATGAGAGC +
Preference number: 2 (lower is better)
Translates to: EESVSSLGGLQEDNHRRSTALPF*TLEDES
Trigger: GCTCTCATCCTCCAGTGTTCAGAATGGGAGGGCTGT...GCTCCTCCTGTGATTATCCTCCTGCAGTCCTCCTAGGCTCGATACACTTTCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR TCA 90 bp CCTCTCATCCCTCCAGGTGTCCCACCTTGCCGTCTGCCTAAGGCATGTTCTGAGTCTGGAAAACACAGGTaGCTGTTTTTATCCCAGGGC +
Preference number: 2 (lower is better)
Translates to: PLIPPGVPPCRLPKACSESGKHR*LFLSQG
Trigger: GCCCTGGGATAAAAACAGTCACCTGTGTTTTCCAGA...CTCAGAACATGCCTTAGGCAGACGGCAAGGTGGGACACCTGGAGGGATGAGAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR GCA 90 bp AGCGGAGATGGTGACTTCAGCCCAAGGAACCTGCCTTACTCCTGTTGCTCCTCACTGACCCCACAGTCTTaGCTTTCCCTTCGAAATGCC +
Preference number: 2 (lower is better)
Translates to: SGDGDFSPRNLPYSCCSSLTPQS*LSLRNA
Trigger: GGCATTTCGAAGGGAAAGGCAAGACTGTGGGGTCAG...TGAGGAGCAACAGGAGTAAGGCAGGTTCCTTGGGCTGAAGTCACCATCTCCGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR CCA 90 bp CCTCTCATCCCTCCAGGTGTCCCACCTTGCCGTCTGCCTAAGGCATGTTCTGAGCTTCTGGAGACACTCTaGGGACTTTATACCTGGATG +
Preference number: 2 (lower is better)
Translates to: PLIPPGVPPCRLPKACSELLETL*GLYTWM
Trigger: CATCCAGGTATAAAGTCCCCAGAGTGTCTCCAGAAG...CTCAGAACATGCCTTAGGCAGACGGCAAGGTGGGACACCTGGAGGGATGAGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR CCA 90 bp GATGTGACCTGTAAATACTGGAATCTGCAGAGAGCCGAGGGGACAGCCAGCCAGCTTGATGGTAGAGCCTaGCTTTCCCAAGAGGGGAAC +
Preference number: 2 (lower is better)
Translates to: DVTCKYWNLQRAEGTASQLDGRA*LSQEGN
Trigger: GTTCCCCTCTTGGGAAAGCCAGGCTCTACCATCAAG...CTGGCTGGCTGTCCCCTCGGCTCTCTGCAGATTCCAGTATTTACAGGTCACATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CAA 90 bp ATCAACCATGTGGACCTAGGAGTTGTGCTGCCCACTTCCAGGGGGTaGACACATCTGACCGTCAAGAAGTCGGCTCACACTGTACGTGAA +
Preference number: 2 (lower is better)
Translates to: INHVDLGVVLPTSRG*THLTVKKSAHTVRE
Trigger: TTCACGTACAGTGTGAGCCGACTTCTTGACGGTCAGATGTGTCAACCCCCTGGAAGTGGGCAGCACAACTCCTAGGTCCACATGGTTGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR GCA 90 bp GAGCACATGGCCCCCAACAAAGACGCCAATGACCTTCCGGACAAAGACAGGACACATGCCCATCACAGATaGAGGAAAGGGACAAAGCAG +
Preference number: 2 (lower is better)
Translates to: EHMAPNKDANDLPDKDRTHAHHR*RKGTKQ
Trigger: CTGCTTTGTCCCTTTCCTGCATCTGTGATGGGCATG...TGTCCTGTCTTTGTCCGGAAGGTCATTGGCGTCTTTGTTGGGGGCCATGTGCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR GCA 90 bp GAGCACATGGCCCCCAACAAAGACGCCAATGACCTTCCGGACAAAGACAGGACATCCCTTCACAGGAACTaGCTCCTTGGCTGTTCTACA +
Preference number: 2 (lower is better)
Translates to: EHMAPNKDANDLPDKDRTSLHRN*LLGCST
Trigger: TGTAGAACAGCCAAGGAGGCAGTTCCTGTGAAGGGA...TGTCCTGTCTTTGTCCGGAAGGTCATTGGCGTCTTTGTTGGGGGCCATGTGCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR CCA 90 bp GAGGAAAGTGTATCGAGCCTAGGAGGACTGCAGGAGGATAATCACAGGAGGAGCCATACTCTGCACTGGTaGGACTGTTCATCTGCAGGC +
Preference number: 2 (lower is better)
Translates to: EESVSSLGGLQEDNHRRSHTLHW*DCSSAG
Trigger: GCCTGCAGATGAACAGTCCCACCAGTGCAGAGTATG...GCTCCTCCTGTGATTATCCTCCTGCAGTCCTCCTAGGCTCGATACACTTTCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR CCA 90 bp TTTCTGACCACATATTTTGGCATCTCAGTCTCTCGTGCCTCAGAGCAGATGAGATGTGACGGCAGACTCTaGGCCCCATGGCCTGTGTCC +
Preference number: 2 (lower is better)
Translates to: FLTTYFGISVSRASEQMRCDGRL*APWPVS
Trigger: GGACACAGGCCATGGGGCCCAGAGTCTGCCGTCACA...TCTCATCTGCTCTGAGGCACGAGAGACTGAGATGCCAAAATATGTGGTCAGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR CCA 90 bp ATCAACCATGTGGACCTAGGAGTTGTGCTGCCCACTTCCAGGGGGTTGACACATCTGAGGCTGGCAGGATaGCACTGGATTGGACAATCA +
Preference number: 2 (lower is better)
Translates to: INHVDLGVVLPTSRGLTHLRLAG*HWIGQS
Trigger: TGATTGTCCAATCCAGTGCCATCCTGCCAGCCTCAG...ATGTGTCAACCCCCTGGAAGTGGGCAGCACAACTCCTAGGTCCACATGGTTGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CAA 90 bp ACCACGAGGCTCACTCGCGCAATAATGCTGCCATCAAACCTCACCTaGGGGGAACACTGTAATTTAACCCTGAACCCCAACTTGTGCCCA +
Preference number: 2 (lower is better)
Translates to: TTRLTRAIMLPSNLT*GEHCNLTLNPNLCP
Trigger: TGGGCACAAGTTGGGGTTCAGGGTTAAATTACAGTGTTCCCCCAAGGTGAGGTTTGATGGCAGCATTATTGCGCGAGTGAGCCTCGTGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CAA 90 bp GAGGGTCTGCTTCAGGAACAGGGGCACCTGAGGCATCTTAGGATCTaGAGGGATGTTACAAGATGCTGTGACAGAGAAGAAGCCACACGT +
Preference number: 2 (lower is better)
Translates to: EGLLQEQGHLRHLRI*RDVTRCCDREEATR
Trigger: ACGTGTGGCTTCTTCTCTGTCACAGCATCTTGTAACATCCCTCAAGATCCTAAGATGCCTCAGGTGCCCCTGTTCCTGAAGCAGACCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR TCA 90 bp AAGGGGGTCAACTTGGATATCTGGAGAGCTATTCTGAGTGAATCCCTTCACAGGTTCCACCTGAGCCTGTaGCCCTGGGAGTCTAGTCTC +
Preference number: 2 (lower is better)
Translates to: KGVNLDIWRAILSESLHRFHLSL*PWESSL
Trigger: GAGACTAGACTCCCAGGGTCACAGGCTCAGGTGGAA...CCTGTGAAGGGATTCACTCAGAATAGCTCTCCAGATATCCAAGTTGACCCCCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR TCA 90 bp ATACTTGATGTGTGCTCCTTCTGCCGCAAACCACCCACTGGTGAGAGGAAGTCCAGAGGCTCAGCTTCATaGTGGATTGGCTTTCAGGGA +
Preference number: 2 (lower is better)
Translates to: ILDVCSFCRKPPTGERKSRGSAS*WIGFQG
Trigger: TCCCTGAAAGCCAATCCATCATGAAGCTGAGCCTCT...GGACTTCCTCTCACCAGTGGGTGGTTTGCGGCAGAAGGAGCACACATCAAGTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR GCA 90 bp AAGGGGGTCAACTTGGATATCTGGAGAGCTATTCTGAGTGAATCCCTTCACAGGGACAGCAGGGACAGATaGCTCCCATGTCCAGTGCCT +
Preference number: 2 (lower is better)
Translates to: KGVNLDIWRAILSESLHRDSRDR*LPCPVP
Trigger: AGGCACTGGACATGGGAGGCATCTGTCCCTGCTGTC...CCTGTGAAGGGATTCACTCAGAATAGCTCTCCAGATATCCAAGTTGACCCCCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR GCA 90 bp CTTTCTGACCACATATTTTGGCATCTCAGTCTCTCGTGCCTCAGAGCAGATGAGCCCCAGTGTCCACCATaGTGGCCACAGCATCCTCTT +
Preference number: 2 (lower is better)
Translates to: LSDHIFWHLSLSCLRADEPQCPP*WPQHPL
Trigger: AAGAGGATGCTGTGGCCAGCATGGTGGACACTGGGG...CTCATCTGCTCTGAGGCACGAGAGACTGAGATGCCAAAATATGTGGTCAGAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR GCA 90 bp CACTCCGGGTGCACCAGTCAGATACACAGTGAGAACTTTATAAAAAGACGGTCAGGCTCTCTGAGGGTCTaGTTCAGGAACAGGGGCACC +
Preference number: 2 (lower is better)
Translates to: HSGCTSQIHSENFIKRRSGSLRV*FRNRGT
Trigger: GGTGCCCCTGTTCCTGAAGCAGACCCTCAGAGAGCC...TGACCGTCTTTTTATAAAGTTCTCACTGTGTATCTGACTGGTGCACCCGGAGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR GCA 90 bp GATGTGACCTGTAAATACTGGAATCTGCAGAGAGCCGAGGGGACAGCCAGCCAGTACTTTGCTTTCCCCTaGTGTTTCCAGGAACACCAG +
Preference number: 2 (lower is better)
Translates to: DVTCKYWNLQRAEGTASQYFAFP*CFQEHQ
Trigger: CTGGTGTTCCTGGAAACAGCAGGGGAAAGCAAAGTA...CTGGCTGGCTGTCCCCTCGGCTCTCTGCAGATTCCAGTATTTACAGGTCACATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR GCA 90 bp GAGGAAAGTGTATCGAGCCTAGGAGGACTGCAGGAGGATAATCACAGGAGGAGCGTAAATACTGGAATCTaGAGAGAGCCGAGGGGACAG +
Preference number: 2 (lower is better)
Translates to: EESVSSLGGLQEDNHRRSVNTGI*REPRGQ
Trigger: CTGTCCCCTCGGCTCTCTGCAGATTCCAGTATTTAC...GCTCCTCCTGTGATTATCCTCCTGCAGTCCTCCTAGGCTCGATACACTTTCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR CCA 90 bp AAGCAAGGTCCTAACACAGGCACCTCAGTCCCAGCATTCCTTCTGGTCCTTTTCAGCCCAGTTTCTCTCTaGCTGGCACCATCATTGGCA +
Preference number: 2 (lower is better)
Translates to: KQGPNTGTSVPAFLLVLFSPVSL*LAPSLA
Trigger: TGCCAATGATGGTGCCAGCCAGAGAGAAACTGGGCT...GAAAAGGACCAGAAGGAATGCTGGGACTGAGGTGCCTGTGTTAGGACCTTGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CAA 90 bp CTCTTCTGTAAGTCTGGTTGCCAGCGCTCCAGTGTTTCTTTCATGTaGGTGCTGAGGCTGGCAGGATGGCACTGGATTGGACAATCAAGA +
Preference number: 2 (lower is better)
Translates to: LFCKSGCQRSSVSFM*VLRLAGWHWIGQSR
Trigger: TCTTGATTGTCCAATCCAGTGCCATCCTGCCAGCCTCAGCACCAACATGAAAGAAACACTGGAGCGCTGGCAACCAGACTTACAGAAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CAA 90 bp CCAGATAGATACAAGGAGTCTGCAAGAGCAGCTTTCCCAACTACTTaGCTTTCCCCTGCTGTTTCCAGGAACACCAGGCAAGCAAGGTCC +
Preference number: 2 (lower is better)
Translates to: PDRYKESARAAFPTT*LSPAVSRNTRQARS
Trigger: GGACCTTGCTTGCCTGGTGTTCCTGGAAACAGCAGGGGAAAGCAAAGTAGTTGGGAAAGCTGCTCTTGCAGACTCCTTGTATCTATCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR TCA 90 bp CCAGGCCCACCTTTCTTGAGTGGGGAAACCTCGCACAATCATTTCTCTACATCACATACAGTAAGAGACTaGGGACAAAGGGAAGCGGGG +
Preference number: 2 (lower is better)
Translates to: PGPPFLSGETSHNHFSTSHTVRD*GQREAG
Trigger: CCCCGCTTCCCTTTGTCCTCAGTCTCTTACTGTATG...TGATGTAGAGAAATGATTGTGCGAGGTTTCCCCACTCAAGAAAGGTGGGCCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR TCA 90 bp GAGGAAAGTGTATCGAGCCTAGGAGGACTGCAGGAGGATAATCACAGGAGGAGCCCACACGTGGGAAGATaGAATGTATGTGCCTCAAAC +
Preference number: 2 (lower is better)
Translates to: EESVSSLGGLQEDNHRRSPHVGR*NVCASN
Trigger: GTTTGAGGCACATACATTTCATCTTCCCACGTGTGG...GCTCCTCCTGTGATTATCCTCCTGCAGTCCTCCTAGGCTCGATACACTTTCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR TCA 90 bp GAGGAAAGTGTATCGAGCCTAGGAGGACTGCAGGAGGATAATCACAGGAGGAGCGACAGTCGCCCTGTGTaGATGATTCCTTATTCTCAC +
Preference number: 2 (lower is better)
Translates to: EESVSSLGGLQEDNHRRSDSRPV*MIPYSH
Trigger: GTGAGAATAAGGAATCATTCACACAGGGCGACTGTC...GCTCCTCCTGTGATTATCCTCCTGCAGTCCTCCTAGGCTCGATACACTTTCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR GCA 90 bp GCATGTACCTGCTCAGAAAGTGGAGTTGAGATGGAGAGAAATGACATATGTCAGCTCCTGAGGTGCCCATaGTCAGTGGTCAGCTCTGGG +
Preference number: 2 (lower is better)
Translates to: ACTCSESGVEMERNDICQLLRCP*SVVSSG
Trigger: CCCAGAGCTGACCACTGAGCATGGGCACCTCAGGAG...CTGACATATGTCATTTCTCTCCATCTCAACTCCACTTTCTGAGCAGGTACATGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR GCA 90 bp GAGGAAAGTGTATCGAGCCTAGGAGGACTGCAGGAGGATAATCACAGGAGGAGCTTTACAAAACCCCCATaGCAACCCGACACAGAACAG +
Preference number: 2 (lower is better)
Translates to: EESVSSLGGLQEDNHRRSFTKPP*QPDTEQ
Trigger: CTGTTCTGTGTCGGGTTGGCATGGGGGTTTTGTAAA...GCTCCTCCTGTGATTATCCTCCTGCAGTCCTCCTAGGCTCGATACACTTTCCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR CCA 90 bp AGCGGAGATGGTGACTTCAGCCCAAGGAACCTGCCTTACTCCTGTTGCTCCTCATCTGACCACATATTTTaGCATCTCAGTCTCTCGTGC +
Preference number: 2 (lower is better)
Translates to: SGDGDFSPRNLPYSCCSSSDHIF*HLSLSC
Trigger: GCACGAGAGACTGAGATGCCAAAATATGTGGTCAGA...TGAGGAGCAACAGGAGTAAGGCAGGTTCCTTGGGCTGAAGTCACCATCTCCGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR TCA 90 bp GCCTCTCAAGTCTTCATGACTACTCTGTCTTCACTCCGGGTGCACCAGTCAGATTCTGGAGAGCTATTCTaGGTGAATCCCTTCACAGGA +
Preference number: 2 (lower is better)
Translates to: ASQVFMTTLSSLRVHQSDSGELF*VNPFTG
Trigger: TCCTGTGAAGGGATTCACTCAGAATAGCTCTCCAGA...ATCTGACTGGTGCACCCGGAGTGAAGACAGAGTAGTCATGAAGACTTGAGAGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR CCA 90 bp AAGCAAGGTCCTAACACAGGCACCTCAGTCCCAGCATTCCTTCTGGTCCTTTTCATTGGACAATCAAGATaGAGAAGGAGGAGGCCCCAT +
Preference number: 2 (lower is better)
Translates to: KQGPNTGTSVPAFLLVLFIGQSR*RRRRPH
Trigger: ATGGGGCCTCCTCCTTCTCCATCTTGATTGTCCAAT...GAAAAGGACCAGAAGGAATGCTGGGACTGAGGTGCCTGTGTTAGGACCTTGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR CCA 90 bp GATGTGACCTGTAAATACTGGAATCTGCAGAGAGCCGAGGGGACAGCCAGCCAGAGAAGAAGCCACACGTaGGAAGATGAAATGTATGTG +
Preference number: 2 (lower is better)
Translates to: DVTCKYWNLQRAEGTASQRRSHT*EDEMYV
Trigger: CACATACATTTCATCTTCCCACGTGTGGCTTCTTCT...CTGGCTGGCTGTCCCCTCGGCTCTCTGCAGATTCCAGTATTTACAGGTCACATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CAA 90 bp ACAGCAGGGACAGATGCCTCCCATGTCCAGTGCCTATGTAAATCCTaGTCATCTTATGTCATGCCCATCACAGATGCAGGAAAGGGACAA +
Preference number: 2 (lower is better)
Translates to: TAGTDASHVQCLCKS*SSYVMPITDAGKGQ
Trigger: TTGTCCCTTTCCTGCATCTGTGATGGGCATGACATAAGATGACAAGGATTTACATAGGCACTGGACATGGGAGGCATCTGTCCCTGCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR GCA 90 bp AAGCAAGGTCCTAACACAGGCACCTCAGTCCCAGCATTCCTTCTGGTCCTTTTCAGCACTGAGTGGATCTaGATGGAAAGGTGCTTGTTT +
Preference number: 2 (lower is better)
Translates to: KQGPNTGTSVPAFLLVLFSTEWI*MERCLF
Trigger: AAACAAGCACCTTTCCATGCAGATCCACTCAGTGCT...GAAAAGGACCAGAAGGAATGCTGGGACTGAGGTGCCTGTGTTAGGACCTTGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR CCA 90 bp ACTCTTGATGGTAGAGCCTGGCTTTCCCAAGAGGGGAACAAAGGTGGGACCCTGGTCAACTTGGATATCTaGAGAGCTATTCTGAGTGAA +
Preference number: 2 (lower is better)
Translates to: TLDGRAWLSQEGNKGGTLVNLDI*RAILSE
Trigger: TTCACTCAGAATAGCTCTCCAGATATCCAAGTTGAC...CAGGGTCCCACCTTTGTTCCCCTCTTGGGAAAGCCAGGCTCTACCATCAAGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR CCA 90 bp TTTCTGACCACATATTTTGGCATCTCAGTCTCTCGTGCCTCAGAGCAGATGAGATGGGGACTTTATACCTaGATGTCCAGGCCAGTCAGC +
Preference number: 2 (lower is better)
Translates to: FLTTYFGISVSRASEQMRWGLYT*MSRPVS
Trigger: GCTGACTGGCCTGGACATCCAGGTATAAAGTCCCCA...TCTCATCTGCTCTGAGGCACGAGAGACTGAGATGCCAAAATATGTGGTCAGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR TCA 90 bp ATGGCCCCCAACAAAGACGCCAATGACCTTCCGGACAAAGACAGGACATCTGGATGTGCCTCAAACTTATaGCCCATAGAGCCAATAAAA +
Preference number: 2 (lower is better)
Translates to: MAPNKDANDLPDKDRTSGCASNL*PIEPIK
Trigger: TTTTATTGGCTCTATGGGTCATAAGTTTGAGGCACA...TCCAGATGTCCTGTCTTTGTCCGGAAGGTCATTGGCGTCTTTGTTGGGGGCCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR TCA 90 bp ATACTTGATGTGTGCTCCTTCTGCCGCAAACCACCCACTGGTGAGAGGAAGTCCGCTTTAATGCCTTTCTaGCCACATATTTTGGCATCT +
Preference number: 2 (lower is better)
Translates to: ILDVCSFCRKPPTGERKSALMPF*PHILAS
Trigger: AGATGCCAAAATATGTGGTCAGAAAGGCATTAAAGC...GGACTTCCTCTCACCAGTGGGTGGTTTGCGGCAGAAGGAGCACACATCAAGTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR GCA 90 bp GCATGTACCTGCTCAGAAAGTGGAGTTGAGATGGAGAGAAATGACATATGTCAGGCTGACAGCTCTCTCTaGCTCTGTGGTCACTACAGA +
Preference number: 2 (lower is better)
Translates to: ACTCSESGVEMERNDICQADSSL*LCGHYR
Trigger: TCTGTAGTGACCACAGAGGCAGAGAGAGCTGTCAGC...CTGACATATGTCATTTCTCTCCATCTCAACTCCACTTTCTGAGCAGGTACATGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR CCA 90 bp GCCTCTCAAGTCTTCATGACTACTCTGTCTTCACTCCGGGTGCACCAGTCAGATGGAGGAGGCCCCATTTaGTATTTAATAGTAGGATGT +
Preference number: 2 (lower is better)
Translates to: ASQVFMTTLSSLRVHQSDGGGPI*YLIVGC
Trigger: ACATCCTACTATTAAATACCAAATGGGGCCTCCTCC...ATCTGACTGGTGCACCCGGAGTGAAGACAGAGTAGTCATGAAGACTTGAGAGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR CCA 90 bp GCCTCTCAAGTCTTCATGACTACTCTGTCTTCACTCCGGGTGCACCAGTCAGATAACTTGATGTCATTCTaGATGTGTGGGAAGAGCACA +
Preference number: 2 (lower is better)
Translates to: ASQVFMTTLSSLRVHQSDNLMSF*MCGKST
Trigger: TGTGCTCTTCCCACACATCCAGAATGACATCAAGTT...ATCTGACTGGTGCACCCGGAGTGAAGACAGAGTAGTCATGAAGACTTGAGAGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR CCA 90 bp GCATGTACCTGCTCAGAAAGTGGAGTTGAGATGGAGAGAAATGACATATGTCAGTCCCATTCTGAACACTaGAGGATGAGAGCTGCCAGG +
Preference number: 2 (lower is better)
Translates to: ACTCSESGVEMERNDICQSHSEH*RMRAAR
Trigger: CCTGGCAGCTCTCATCCTCCAGTGTTCAGAATGGGA...CTGACATATGTCATTTCTCTCCATCTCAACTCCACTTTCTGAGCAGGTACATGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR TCA 90 bp CCAGGCCCACCTTTCTTGAGTGGGGAAACCTCGCACAATCATTTCTCTACATCAGCTTTCCTGTGCATGTaGGGACCACAAAATGTATTT +
Preference number: 2 (lower is better)
Translates to: PGPPFLSGETSHNHFSTSAFLCM*GPQNVF
Trigger: AAATACATTTTGTGGTCCTCACATGCACAGGAAAGC...TGATGTAGAGAAATGATTGTGCGAGGTTTCCCCACTCAAGAAAGGTGGGCCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR TCA 90 bp TGGGACCCTGGATGGATACATTCATTACTTCTGGAGACACTCTGGGGACTTTATTGTTACAAGATGCTGTaGCAGAGAAGAAGCCACACG +
Preference number: 2 (lower is better)
Translates to: WDPGWIHSLLLETLWGLYCYKML*QRRSHT
Trigger: CGTGTGGCTTCTTCTCTGTCACAGCATCTTGTAACA...ATAAAGTCCCCAGAGTGTCTCCAGAAGTAATGAATGTATCCATCCAGGGTCCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR CCA 90 bp AAGGGGGTCAACTTGGATATCTGGAGAGCTATTCTGAGTGAATCCCTTCACAGGTTTGAGTTTTGGTTATaGAGAAGACAAGGCCGGGCT +
Preference number: 2 (lower is better)
Translates to: KGVNLDIWRAILSESLHRFEFWL*RRQGRA
Trigger: AGCCCGGCCTTGTCTTCTCCATAACCAAAACTCAAA...CCTGTGAAGGGATTCACTCAGAATAGCTCTCCAGATATCCAAGTTGACCCCCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR CCA 90 bp GCATGTACCTGCTCAGAAAGTGGAGTTGAGATGGAGAGAAATGACATATGTCAGAGAGGGGAACAAAGGTaGGACCCTGGATGGATACAT +
Preference number: 2 (lower is better)
Translates to: ACTCSESGVEMERNDICQRGEQR*DPGWIH
Trigger: ATGTATCCATCCAGGGTCCCACCTTTGTTCCCCTCT...CTGACATATGTCATTTCTCTCCATCTCAACTCCACTTTCTGAGCAGGTACATGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR TCA 90 bp AAGGGGGTCAACTTGGATATCTGGAGAGCTATTCTGAGTGAATCCCTTCACAGGTTGAAATGCTCTCACTaGGAACCTGTCTTTCAGAAC +
Preference number: 2 (lower is better)
Translates to: KGVNLDIWRAILSESLHRLKCSH*EPVFQN
Trigger: GTTCTGAAAGACAGGTTCTCAGTGAGAGCATTTCAA...CCTGTGAAGGGATTCACTCAGAATAGCTCTCCAGATATCCAAGTTGACCCCCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR GCA 90 bp ATGGCCCCCAACAAAGACGCCAATGACCTTCCGGACAAAGACAGGACATCTGGAAAGATGAAATGTATGTaGCTCAAACTTATGACCCAT +
Preference number: 2 (lower is better)
Translates to: MAPNKDANDLPDKDRTSGKMKCM*LKLMTH
Trigger: ATGGGTCATAAGTTTGAGGCACATACATTTCATCTT...TCCAGATGTCCTGTCTTTGTCCGGAAGGTCATTGGCGTCTTTGTTGGGGGCCAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR CCA 90 bp GCATGTACCTGCTCAGAAAGTGGAGTTGAGATGGAGAGAAATGACATATGTCAGCTGAAGGACTCTCTATaGGAAGAGGCCTTTTACCAG +
Preference number: 2 (lower is better)
Translates to: ACTCSESGVEMERNDICQLKDSL*EEAFYQ
Trigger: CTGGTAAAAGGCCTCTTCCCATAGAGAGTCCTTCAG...CTGACATATGTCATTTCTCTCCATCTCAACTCCACTTTCTGAGCAGGTACATGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR GCA 72 bp GCATCTACTTCTGTCAGGGTGTGCATGCGCGCCCAGTaGACACACCTCTCACAGGGCTGGGGAGGGGAAGAC +
Preference number: 3 (lower is better)
Translates to: ASTSVRVCMRAQ*THLSQGWGGED
Trigger: GTCTTCCCCTCCCCAGCCCTGTGAGAGGTGTGTGCACTGGGCGCGCATGCACACCCTGACAGAAGTAGATGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR GCA 72 bp CCAGACTTGGTAGGCTGCACTCTTCCCTTCCACCCGTaGCCAGGGAACTGTCCCCTTGAGGCTCACCCTCAT +
Preference number: 3 (lower is better)
Translates to: PDLVGCTLPFHP*PGNCPLEAHPH
Trigger: ATGAGGGTGAGCCTCAAGGGGACAGTTCCCTGGGCACGGGTGGAAGGGAAGAGTGCAGCCTACCAAGTCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CCA 72 bp CTCCTGAGGTGCCCATGCTCAGTGGTCAGCTCTGGGTaGTACCACGAGGCTCACTCGCGCAATAATGCTGCC +
Preference number: 3 (lower is better)
Translates to: LLRCPCSVVSSG*YHEAHSRNNAA
Trigger: GGCAGCATTATTGCGCGAGTGAGCCTCGTGGTACCACCCAGAGCTGACCACTGAGCATGGGCACCTCAGGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR TCA 72 bp ACCACGTTCTCACAGGCTGTCAGCACTCAGGCTCTCTaGGGGTCTGCTTCAGGAACAGGGGCACCTGAGGCA +
Preference number: 3 (lower is better)
Translates to: TTFSQAVSTQAL*GSASGTGAPEA
Trigger: TGCCTCAGGTGCCCCTGTTCCTGAAGCAGACCCTCAGAGAGCCTGAGTGCTGACAGCCTGTGAGAACGTGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR TCA 72 bp AATGGCTGGCACCCAGCTCCACCTGGGTATCCAGGGTaGCTCCGTGGCATGTCCCCTTATCATAGCTCCTGG +
Preference number: 3 (lower is better)
Translates to: NGWHPAPPGYPG*LRGMSPYHSSW
Trigger: CCAGGAGCTATGATAAGGGGACATGCCACGGAGTCACCCTGGATACCCAGGTGGAGCTGGGTGCCAGCCATT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR GCA 72 bp CTCCTCATGACCCGTCTCTACCCAGACTTGGTAGGCTaGACTCTTCCCTTCCACCCGTGCCCAGGGAACTGT +
Preference number: 3 (lower is better)
Translates to: LLMTRLYPDLVG*TLPFHPCPGNC
Trigger: ACAGTTCCCTGGGCACGGGTGGAAGGGAAGAGTGCAGCCTACCAAGTCTGGGTAGAGACGGGTCATGAGGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR GCA 72 bp CACAGCGTCCCTCTCATCCCTCCAGGTGTCCCACCTTaGCGTCTGCCTAAGGCATGTTCTGAGCTTCCTCAC +
Preference number: 3 (lower is better)
Translates to: HSVPLIPPGVPP*RLPKACSELPH
Trigger: GTGAGGAAGCTCAGAACATGCCTTAGGCAGACGGCAAGGTGGGACACCTGGAGGGATGAGAGGGACGCTGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR CAA 90 bp CGTCTCTACCCAGACTTGGTAGGCTGCACTCTTCCCTTCCACCCGTGCCCAGGGAGTGTTTCTTTCATGTaGGTGCTGAGGCTGGCAGGA +
Preference number: 3 (lower is better)
Translates to: RLYPDLVGCTLPFHPCPGSVSFM*VLRLAG
Trigger: TCCTGCCAGCCTCAGCACCAACATGAAAGAAACACT...CCCTGGGCACGGGTGGAAGGGAAGAGTGCAGCCTACCAAGTCTGGGTAGAGACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR TCA 72 bp CCTGGATGTCCAGGCCAGTCAGCTGTCCTTTCTCCCTaGAGTAATGGGACCAGAGTGGCCCCTCCACAAGGA +
Preference number: 3 (lower is better)
Translates to: PGCPGQSAVLSP*SNGTRVAPPQG
Trigger: TCCTTGTGGAGGGGCCACTCTGGTCCCATTACTTCAGGGAGAAAGGACAGCTGACTGGCCTGGACATCCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR TCA 72 bp ACCCTAGAGCTTCCCTGGGCCCAGAAGCGGAGATGGTaGCTTCAGCCCAAGGAACCTGCCTTACTCCTGTTG +
Preference number: 3 (lower is better)
Translates to: TLELPWAQKRRW*LQPKEPALLLL
Trigger: CAACAGGAGTAAGGCAGGTTCCTTGGGCTGAAGTCACCATCTCCGCTTCTGGGCCCAGGGAAGCTCTAGGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR TCA 72 bp GCCCAGTTTCTCTCTGGCTGGCACCATCATTGGCACTaGGCATCTACTTCTGTCAGGGTGTGCATGCGCGCC +
Preference number: 3 (lower is better)
Translates to: AQFLSGWHHHWH*ASTSVRVCMRA
Trigger: GGCGCGCATGCACACCCTGACAGAAGTAGATGCTCAGTGCCAATGATGGTGCCAGCCAGAGAGAAACTGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR GCA 72 bp TCCCTCTCATCCCTCCAGGTGTCCCACCTTGCCGTCTaGCTAAGGCATGTTCTGAGCTTCCTCACCCCAAGT +
Preference number: 3 (lower is better)
Translates to: SLSSLQVSHLAV*LRHVLSFLTPS
Trigger: ACTTGGGGTGAGGAAGCTCAGAACATGCCTTAGGCAGACGGCAAGGTGGGACACCTGGAGGGATGAGAGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CCA 72 bp TTGCCAGTCTGGGAGGAGGGTCTAAGATGGCAGCTGTaGGCTTGTGGGTGGCCAACATGTTCCTTCCAGGTG +
Preference number: 3 (lower is better)
Translates to: LPVWEEGLRWQL*ACGWPTCSFQV
Trigger: CACCTGGAAGGAACATGTTGGCCACCCACAAGCCCACAGCTGCCATCTTAGACCCTCCTCCCAGACTGGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CCA 72 bp CACCCCAAGTACCAGACAAGAGAGCTGTATTCTAGCTaGGTCAGCAAGCCAGCCAGGGCTGTCAGGGAGGTG +
Preference number: 3 (lower is better)
Translates to: HPKYQTRELYSS*VSKPARAVREV
Trigger: CACCTCCCTGACAGCCCTGGCTGGCTTGCTGACCCAGCTAGAATACAGCTCTCTTGTCTGGTACTTGGGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR CAA 90 bp ATACTTGATGTGTGCTCCTTCTGCCGCAAACCACCCACTGGTGAGAGGAAGTCCCAACCACTGAAGGGCTaGAGTGCCGAGATGCACCCC +
Preference number: 3 (lower is better)
Translates to: ILDVCSFCRKPPTGERKSQPLKG*SAEMHP
Trigger: GGGGTGCATCTCGGCACTCAAGCCCTTCAGTGGTTG...GGACTTCCTCTCACCAGTGGGTGGTTTGCGGCAGAAGGAGCACACATCAAGTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR CAA 90 bp ATACTTGATGTGTGCTCCTTCTGCCGCAAACCACCCACTGGTGAGAGGAAGTCCCCAGGCCCACCTTTCTaGAGTGGGGAAACCTCGCAC +
Preference number: 3 (lower is better)
Translates to: ILDVCSFCRKPPTGERKSPGPPF*SGETSH
Trigger: GTGCGAGGTTTCCCCACTCAAGAAAGGTGGGCCTGG...GGACTTCCTCTCACCAGTGGGTGGTTTGCGGCAGAAGGAGCACACATCAAGTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR TCA 72 bp CCATCACAGATGCAGGAAAGGGACAAAGCAGATGACTaGTCCTGTGACGGCAGACTCTGGGCCCCATGGCCT +
Preference number: 3 (lower is better)
Translates to: PSQMQERDKADD*SCDGRLWAPWP
Trigger: AGGCCATGGGGCCCAGAGTCTGCCGTCACAGGATCAGTCATCTGCTTTGTCCCTTTCCTGCATCTGTGATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR TCA 72 bp AGTGCCGAGATGCACCCCCAGCCTCTCAAGTCTTCATaGCTACTCTGTCTTCACTCCGGGTGCACCAGTCAG +
Preference number: 3 (lower is better)
Translates to: SAEMHPQPLKSS*LLCLHSGCTSQ
Trigger: CTGACTGGTGCACCCGGAGTGAAGACAGAGTAGTCATGAAGACTTGAGAGGCTGGGGGTGCATCTCGGCACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CCA 72 bp GAGGAGGGTCTAAGATGGCAGCTGTGGGCTTGTGGGTaGCCAACATGTTCCTTCCAGGTGCATGTACCTGCT +
Preference number: 3 (lower is better)
Translates to: EEGLRWQLWACG*PTCSFQVHVPA
Trigger: AGCAGGTACATGCACCTGGAAGGAACATGTTGGCCACCCACAAGCCCACAGCTGCCATCTTAGACCCTCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR TCA 72 bp CTGGTCCGCCACACCAAACACTTCCACCTGAGCCTGTaGCCCTGGGAGTCTAGTCTCCTGTTGAAATGCTCT +
Preference number: 3 (lower is better)
Translates to: LVRHTKHFHLSL*PWESSLLLKCS
Trigger: AGAGCATTTCAACAGGAGACTAGACTCCCAGGGTCACAGGCTCAGGTGGAAGTGTTTGGTGTGGCGGACCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR GCA 72 bp TCTCACCTGCTCTCCCTCCGCAGAGTGCTGCCAACATaGCAGTTTCCAGGACAGTCAAATATGCCCAACCAC +
Preference number: 3 (lower is better)
Translates to: SHLLSLRRVLPT*QFPGQSNMPNH
Trigger: GTGGTTGGGCATATTTGACTGTCCTGGAAACTGGCATGTTGGCAGCACTCTGCGGAGGGAGAGCAGGTGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR GCA 72 bp GCTCACCCTCATCTCACCTGCTCTCCCTCCGCAGAGTaGTGCCAACATGCCAGTTTCCAGGACAGTCAAATA +
Preference number: 3 (lower is better)
Translates to: AHPHLTCSPSAE*CQHASFQDSQI
Trigger: TATTTGACTGTCCTGGAAACTGGCATGTTGGCAGCACTCTGCGGAGGGAGAGCAGGTGAGATGAGGGTGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR GCA 72 bp GTCACCCTTTTAGCAGCCAAGGCTGACAGCTCTCTCTaGCTCTGTGGTCACTACAGACTGATGGGGGTCACA +
Preference number: 3 (lower is better)
Translates to: VTLLAAKADSSL*LCGHYRLMGVT
Trigger: TGTGACCCCCATCAGTCTGTAGTGACCACAGAGGCAGAGAGAGCTGTCAGCCTTGGCTGCTAAAAGGGTGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CCA 72 bp GAAGGAAGCTGCTATCCTCTGTACTCCCAGAGCACATaGCCCCCAACAAAGACGCCAATGACCTTCCGGACA +
Preference number: 3 (lower is better)
Translates to: EGSCYPLYSQST*PPTKTPMTFRT
Trigger: TGTCCGGAAGGTCATTGGCGTCTTTGTTGGGGGCCATGTGCTCTGGGAGTACAGAGGATAGCAGCTTCCTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CCA 72 bp CTGAGTTTAAGGGCACAGCCCTCCCATTCTGAACACTaGAGGATGAGAGCTGCCAGGCCCACCTTTCTTGAG +
Preference number: 3 (lower is better)
Translates to: LSLRAQPSHSEH*RMRAARPTFLE
Trigger: CTCAAGAAAGGTGGGCCTGGCAGCTCTCATCCTCCAGTGTTCAGAATGGGAGGGCTGTGCCCTTAAACTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR TCA 72 bp CTGACAGCTCTCTCTGCCTCTGTGGTCACTACAGACTaGTGGGGGTCACAGCTCTGGAAAACACAGGTGACT +
Preference number: 3 (lower is better)
Translates to: LTALSASVVTTD*WGSQLWKTQVT
Trigger: AGTCACCTGTGTTTTCCAGAGCTGTGACCCCCATCAGTCTGTAGTGACCACAGAGGCAGAGAGAGCTGTCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CCA 72 bp TCTTTCATGTTGGTGCTGAGGCTGGCAGGATGGCACTaGATTGGACAATCAAGATGGAGAAGGAGGAGGCCC +
Preference number: 3 (lower is better)
Translates to: SFMLVLRLAGWH*IGQSRWRRRRP
Trigger: GGGCCTCCTCCTTCTCCATCTTGATTGTCCAATCCAGTGCCATCCTGCCAGCCTCAGCACCAACATGAAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR TCA 72 bp GTTGCCAGCGCTCCAGTGTTTCTTTCATGTTGGTGCTaGGGCTGGCAGGATGGCACTGGATTGGACAATCAA +
Preference number: 3 (lower is better)
Translates to: VASAPVFLSCWC*GWQDGTGLDNQ
Trigger: TTGATTGTCCAATCCAGTGCCATCCTGCCAGCCTCAGCACCAACATGAAAGAAACACTGGAGCGCTGGCAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR GCA 72 bp CATGCTGGCCACAGCATCCTCTTCTGTAAGTCTGGTTaGCAGCGCTCCAGTGTTTCTTTCATGTTGGTGCTG +
Preference number: 3 (lower is better)
Translates to: HAGHSILFCKSG*QRSSVSFMLVL
Trigger: CAGCACCAACATGAAAGAAACACTGGAGCGCTGGCAACCAGACTTACAGAAGAGGATGCTGTGGCCAGCATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR GCA 72 bp TGGAGAGCTATTCTGAGTGAATCCCTTCACAGGAACTaGCTCCTTGGCTGTTCTACAGTGACCACGTGTCCC +
Preference number: 3 (lower is better)
Translates to: WRAILSESLHRN*LLGCSTVTTCP
Trigger: GGGACACGTGGTCACTGTAGAACAGCCAAGGAGGCAGTTCCTGTGAAGGGATTCACTCAGAATAGCTCTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR GCA 72 bp TGCTGCCAACATGCCAGTTTCCAGGACAGTCAAATATaGCCAACCACTGAAGGGCTTGAGTGCCGAGATGCA +
Preference number: 3 (lower is better)
Translates to: CCQHASFQDSQI*PTTEGLECRDA
Trigger: TGCATCTCGGCACTCAAGCCCTTCAGTGGTTGGGCATATTTGACTGTCCTGGAAACTGGCATGTTGGCAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR TCA 72 bp GGGGGTCAACTTGGATATCTGGAGAGCTATTCTGAGTaGATCCCTTCACAGGAACTGCCTCCTTGGCTGTTC +
Preference number: 3 (lower is better)
Translates to: GGQLGYLESYSE*IPSQELPPWLF
Trigger: GAACAGCCAAGGAGGCAGTTCCTGTGAAGGGATTCACTCAGAATAGCTCTCCAGATATCCAAGTTGACCCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR TCA 72 bp GCCTCAGAGCAGATGAGAAGTAGAGGCTCAGCTTCATaGTGGATTGGCTTTCAGGGATGTGTCTTACGAGGG +
Preference number: 3 (lower is better)
Translates to: ASEQMRSRGSAS*WIGFQGCVLRG
Trigger: CCCTCGTAAGACACATCCCTGAAAGCCAATCCATCATGAAGCTGAGCCTCTACTTCTCATCTGCTCTGAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR TCA 72 bp ACACTGGAGGATGAGAGCTGCCAGGCCCACCTTTCTTaGGTGGGGAAACCTCGCACAATCATTTCTCTACAT +
Preference number: 3 (lower is better)
Translates to: TLEDESCQAHLS*VGKPRTIISLH
Trigger: ATGTAGAGAAATGATTGTGCGAGGTTTCCCCACTCAAGAAAGGTGGGCCTGGCAGCTCTCATCCTCCAGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR GCA 72 bp CGTGACTCATACTCTGCACTGGTGGGACTGTTCATCTaGAGGCTTTCCTGTGCATGTGAGGACCACAAAATG +
Preference number: 3 (lower is better)
Translates to: RDSYSALVGLFI*RLSCACEDHKM
Trigger: CATTTTGTGGTCCTCACATGCACAGGAAAGCCTGCAGATGAACAGTCCCACCAGTGCAGAGTATGAGTCACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR GCA 72 bp CCACAGACAGCAGGGACAGATGCCTCCCATGTCCAGTaGCTATGTAAATCCTTGTCATCTTATGTCATGCCC +
Preference number: 3 (lower is better)
Translates to: PQTAGTDASHVQ*LCKSLSSYVMP
Trigger: GGGCATGACATAAGATGACAAGGATTTACATAGGCACTGGACATGGGAGGCATCTGTCCCTGCTGTCTGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CCA 72 bp CAGCTGTCCTTTCTCCCTGAAGTAATGGGACCAGAGTaGCCCCTCCACAAGGAAGCTAAATATCTCAAAGGC +
Preference number: 3 (lower is better)
Translates to: QLSFLPEVMGPE*PLHKEAKYLKG
Trigger: GCCTTTGAGATATTTAGCTTCCTTGTGGAGGGGCCACTCTGGTCCCATTACTTCAGGGAGAAAGGACAGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CCA 72 bp TCATTACTTCTGGAGACACTCTGGGGACTTTATACCTaGATGTCCAGGCCAGTCAGCTGTCCTTTCTCCCTG +
Preference number: 3 (lower is better)
Translates to: SLLLETLWGLYT*MSRPVSCPFSL
Trigger: CAGGGAGAAAGGACAGCTGACTGGCCTGGACATCCAGGTATAAAGTCCCCAGAGTGTCTCCAGAAGTAATGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CCA 72 bp CCTGGCTTTCCCAAGAGGGGAACAAAGGTGGGACCCTaGATGGATACATTCATTACTTCTGGAGACACTCTG +
Preference number: 3 (lower is better)
Translates to: PGFPKRGTKVGP*MDTFITSGDTL
Trigger: CAGAGTGTCTCCAGAAGTAATGAATGTATCCATCCAGGGTCCCACCTTTGTTCCCCTCTTGGGAAAGCCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CCA 72 bp GTGTCTTACGAGGGAACAACCAGAAGGTCCAGGAGATaGAGGCTGATTCAAAAGCAAGGCTTAGTGGGCCTT +
Preference number: 3 (lower is better)
Translates to: VSYEGTTRRSRR*RLIQKQGLVGL
Trigger: AAGGCCCACTAAGCCTTGCTTTTGAATCAGCCTCCATCTCCTGGACCTTCTGGTTGTTCCCTCGTAAGACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR CAA 90 bp GCATGTACCTGCTCAGAAAGTGGAGTTGAGATGGAGAGAAATGACATATGTCAGACCCTGAACCCCAACTaGTGCCCAGAGGTACTGCCA +
Preference number: 3 (lower is better)
Translates to: ACTCSESGVEMERNDICQTLNPN*CPEVLP
Trigger: TGGCAGTACCTCTGGGCACAAGTTGGGGTTCAGGGT...CTGACATATGTCATTTCTCTCCATCTCAACTCCACTTTCTGAGCAGGTACATGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR CAA 90 bp GATGTGACCTGTAAATACTGGAATCTGCAGAGAGCCGAGGGGACAGCCAGCCAGTGCCTATGTAAATCCTaGTCATCTTATGTCATGCCC +
Preference number: 3 (lower is better)
Translates to: DVTCKYWNLQRAEGTASQCLCKS*SSYVMP
Trigger: GGGCATGACATAAGATGACAAGGATTTACATAGGCA...CTGGCTGGCTGTCCCCTCGGCTCTCTGCAGATTCCAGTATTTACAGGTCACATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR TCA 72 bp AGAAGGGGGTCAACTTGGATATCTGGAGAGCTATTCTaGGTGAATCCCTTCACAGGAACTGCCTCCTTGGCT +
Preference number: 3 (lower is better)
Translates to: RRGSTWISGELF*VNPFTGTASLA
Trigger: AGCCAAGGAGGCAGTTCCTGTGAAGGGATTCACTCAGAATAGCTCTCCAGATATCCAAGTTGACCCCCTTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR GCA 72 bp TGGGTGGCCAACATGTTCCTTCCAGGTGCATGTACCTaGTCAGAAAGTGGAGTTGAGATGGAGAGAAATGAC +
Preference number: 3 (lower is better)
Translates to: WVANMFLPGACT*SESGVEMERND
Trigger: GTCATTTCTCTCCATCTCAACTCCACTTTCTGAGCAGGTACATGCACCTGGAAGGAACATGTTGGCCACCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CCA 72 bp AGTGTTTCTTTCATGTTGGTGCTGAGGCTGGCAGGATaGCACTGGATTGGACAATCAAGATGGAGAAGGAGG +
Preference number: 3 (lower is better)
Translates to: SVSFMLVLRLAG*HWIGQSRWRRR
Trigger: CCTCCTTCTCCATCTTGATTGTCCAATCCAGTGCCATCCTGCCAGCCTCAGCACCAACATGAAAGAAACACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR CAA 90 bp AAGCAAGGTCCTAACACAGGCACCTCAGTCCCAGCATTCCTTCTGGTCCTTTTCAGGCATCTTAGGATCTaGAGGGATGTTACAAGATGC +
Preference number: 3 (lower is better)
Translates to: KQGPNTGTSVPAFLLVLFRHLRI*RDVTRC
Trigger: GCATCTTGTAACATCCCTCAAGATCCTAAGATGCCT...GAAAAGGACCAGAAGGAATGCTGGGACTGAGGTGCCTGTGTTAGGACCTTGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR TCA 72 bp ATTTTGGCATCTCAGTCTCTCGTGCCTCAGAGCAGATaGGAAGTAGAGGCTCAGCTTCATGATGGATTGGCT +
Preference number: 3 (lower is better)
Translates to: ILASQSLVPQSR*EVEAQLHDGLA
Trigger: AGCCAATCCATCATGAAGCTGAGCCTCTACTTCTCATCTGCTCTGAGGCACGAGAGACTGAGATGCCAAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR TCA 72 bp CACAGGGCTCAAACCCCATGGACTGTTTGTAAGCACTaGGTGGATCTGCATGGAAAGGTGCTTGTTTTAAGC +
Preference number: 3 (lower is better)
Translates to: HRAQTPWTVCKH*VDLHGKVLVLS
Trigger: GCTTAAAACAAGCACCTTTCCATGCAGATCCACTCAGTGCTTACAAACAGTCCATGGGGTTTGAGCCCTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR TCA 72 bp CATTGCATCAATGAGCACTCTTGCTATCTGAATACTTaGTGTGTGCTCCTTCTGCCGCAAACCACCCACTGG +
Preference number: 3 (lower is better)
Translates to: HCINEHSCYLNT*CVLLLPQTTHW
Trigger: CCAGTGGGTGGTTTGCGGCAGAAGGAGCACACATCAAGTATTCAGATAGCAAGAGTGCTCATTGATGCAATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR GCA 72 bp AGAAATGACATATGTCAGCATCAAATGTTTTGGGGATaGTGGAAGGTAAGGAGATGGAGGGCCACCACAGGG +
Preference number: 3 (lower is better)
Translates to: RNDICQHQMFWG*WKVRRWRATTG
Trigger: CCCTGTGGTGGCCCTCCATCTCCTTACCTTCCAGCATCCCCAAAACATTTGATGCTGACATATGTCATTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CCA 72 bp AGGCTGGCAGGATGGCACTGGATTGGACAATCAAGATaGAGAAGGAGGAGGCCCCATTTGGTATTTAATAGT +
Preference number: 3 (lower is better)
Translates to: RLAGWHWIGQSR*RRRRPHLVFNS
Trigger: ACTATTAAATACCAAATGGGGCCTCCTCCTTCTCCATCTTGATTGTCCAATCCAGTGCCATCCTGCCAGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CCA 72 bp AAAACACAGGTGACTGTTTTTATCCCAGGGCTCACCTaGCCTGTCCTCATCAAAGGTCAGCTTTCTGGGAAT +
Preference number: 3 (lower is better)
Translates to: KTQVTVFIPGLT*PVLIKGQLSGN
Trigger: ATTCCCAGAAAGCTGACCTTTGATGAGGACAGGCCAGGTGAGCCCTGGGATAAAAACAGTCACCTGTGTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CCA 72 bp TCTGGAGGCCATGAATACTCCTGGAATCTCAATGCTTaGGTTGCACAGAGTTTAACGGCTGTTCTGCCCTTT +
Preference number: 3 (lower is better)
Translates to: SGGHEYSWNLNA*VAQSLTAVLPF
Trigger: AAAGGGCAGAACAGCCGTTAAACTCTGTGCAACCCAAGCATTGAGATTCCAGGAGTATTCATGGCCTCCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR CAA 90 bp GAGCACATGGCCCCCAACAAAGACGCCAATGACCTTCCGGACAAAGACAGGACAATGATTAGCTGGGATTaGAGTTTTGGTTATGGAGAA +
Preference number: 3 (lower is better)
Translates to: EHMAPNKDANDLPDKDRTMISWD*SFGYGE
Trigger: TTCTCCATAACCAAAACTCAAATCCCAGCTAATCAT...TGTCCTGTCTTTGTCCGGAAGGTCATTGGCGTCTTTGTTGGGGGCCATGTGCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR CAA 90 bp GCCTCTCAAGTCTTCATGACTACTCTGTCTTCACTCCGGGTGCACCAGTCAGATGAAAGACAAAAGCCCTaGGTAAGCAGTAAAAGTGAA +
Preference number: 3 (lower is better)
Translates to: ASQVFMTTLSSLRVHQSDERQKP*VSSKSE
Trigger: TTCACTTTTACTGCTTACCAAGGGCTTTTGTCTTTC...ATCTGACTGGTGCACCCGGAGTGAAGACAGAGTAGTCATGAAGACTTGAGAGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR-3UTR CAA 90 bp CCAGGCCCACCTTTCTTGAGTGGGGAAACCTCGCACAATCATTTCTCTACATCATGTGAAATCACAGTCTaGTTTTCTTGCAGCAGGACA +
Preference number: 3 (lower is better)
Translates to: PGPPFLSGETSHNHFSTSCEITV*FSCSRT
Trigger: TGTCCTGCTGCAAGAAAACAAGACTGTGATTTCACA...TGATGTAGAGAAATGATTGTGCGAGGTTTCCCCACTCAAGAAAGGTGGGCCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR TCA 72 bp CTGATCCTGGTCCCACAAGTTCCTCATCTGTTAACTTaGTGTCATTCTGGATGTGTGGGAAGAGCACACATG +
Preference number: 3 (lower is better)
Translates to: LILVPQVPHLLT*CHSGCVGRAHM
Trigger: CATGTGTGCTCTTCCCACACATCCAGAATGACATCAAGTTAACAGATGAGGAACTTGTGGGACCAGGATCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR TCA 72 bp TGTCCCCGTAAACAACATTGGTGCAGTTTACTTGGGTaGGGTATGGCCACTCAAGAGTCTATCTTACTTCCC +
Preference number: 3 (lower is better)
Translates to: CPRKQHWCSLLG*GMATQESILLP
Trigger: GGGAAGTAAGATAGACTCTTGAGTGGCCATACCTCACCCAAGTAAACTGCACCAATGTTGTTTACGGGGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CCA 72 bp AAAGGTGGGACCCTGGATGGATACATTCATTACTTCTaGAGACACTCTGGGGACTTTATACCTGGATGTCCA +
Preference number: 3 (lower is better)
Translates to: KGGTLDGYIHYF*RHSGDFIPGCP
Trigger: TGGACATCCAGGTATAAAGTCCCCAGAGTGTCTCCAGAAGTAATGAATGTATCCATCCAGGGTCCCACCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CCA 72 bp AGTGGATCTGCATGGAAAGGTGCTTGTTTTAAGCTGTaGGTATCAAGACAGTCGCCCTGTGTGAATGATTCC +
Preference number: 3 (lower is better)
Translates to: SGSAWKGACFKL*VSRQSPCVNDS
Trigger: GGAATCATTCACACAGGGCGACTGTCTTGATACCCACAGCTTAAAACAAGCACCTTTCCATGCAGATCCACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CCA 72 bp ATGGAGAGAAATGACATATGTCAGCATCAAATGTTTTaGGGATGCTGGAAGGTAAGGAGATGGAGGGCCACC +
Preference number: 3 (lower is better)
Translates to: MERNDICQHQMF*GCWKVRRWRAT
Trigger: GGTGGCCCTCCATCTCCTTACCTTCCAGCATCCCCAAAACATTTGATGCTGACATATGTCATTTCTCTCCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR TCA 72 bp AAGTCAGGGTCAGCAACCTTTGCTTTAATGCCTTTCTaGCCACATATTTTGGCATCTCAGTCTCTCGTGCCT +
Preference number: 3 (lower is better)
Translates to: KSGSATFALMPF*PHILASQSLVP
Trigger: AGGCACGAGAGACTGAGATGCCAAAATATGTGGTCAGAAAGGCATTAAAGCAAAGGTTGCTGACCCTGACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR TCA 72 bp AAGTCGCACATTGCATCAATGAGCACTCTTGCTATCTaGATACTTGATGTGTGCTCCTTCTGCCGCAAACCA +
Preference number: 3 (lower is better)
Translates to: KSHIASMSTLAI*ILDVCSFCRKP
Trigger: TGGTTTGCGGCAGAAGGAGCACACATCAAGTATTCAGATAGCAAGAGTGCTCATTGATGCAATGTGCGACTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CCA 72 bp TTGGACAATCAAGATGGAGAAGGAGGAGGCCCCATTTaGTATTTAATAGTAGGATGTTGGTTTGCACTTCCC +
Preference number: 3 (lower is better)
Translates to: LDNQDGEGGGPI*YLIVGCWFALP
Trigger: GGGAAGTGCAAACCAACATCCTACTATTAAATACCAAATGGGGCCTCCTCCTTCTCCATCTTGATTGTCCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR TCA 72 bp AGTTCAGCCGTTTACTTTCTTGACATTTATGAGCAGTaGGCCCTTGTTAGGAAGACCCCTGATGTGAAATCA +
Preference number: 3 (lower is better)
Translates to: SSAVYFLDIYEQ*ALVRKTPDVKS
Trigger: TGATTTCACATCAGGGGTCTTCCTAACAAGGGCTCACTGCTCATAAATGTCAAGAAAGTAAACGGCTGAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR GCA 72 bp AGAGAAGAAGCCACACGTGGGAAGATGAAATGTATGTaGCTCAAACTTATGACCCATAGAGCCAATAAAAGT +
Preference number: 3 (lower is better)
Translates to: REEATRGKMKCM*LKLMTHRANKS
Trigger: ACTTTTATTGGCTCTATGGGTCATAAGTTTGAGGCACATACATTTCATCTTCCCACGTGTGGCTTCTTCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CCA 72 bp ATATTAGCAAATTCCACACATACAGGTGTACACTATTaGCATAGAGGTTCATGCCAGACAATTTCACTACTT +
Preference number: 3 (lower is better)
Translates to: ILANSTHTGVHY*HRGSCQTISLL
Trigger: AAGTAGTGAAATTGTCTGGCATGAACCTCTATGCCAATAGTGTACACCTGTATGTGTGGAATTTGCTAATAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS-3UTR GCA 90 bp CGTCTCTACCCAGACTTGGTAGGCTGCACTCTTCCCTTCCACCCGTGCCCAGGGCCGCGGCCGGGCTCCTaGACCGTCACGTTGATGAGC +
Preference number: 4 (lower is better)
Translates to: RLYPDLVGCTLPFHPCPGPRPGS*TVTLMS
Trigger: GCTCATCAACGTGACGGTGCAGGAGCCCGGCCGCGG...CCCTGGGCACGGGTGGAAGGGAAGAGTGCAGCCTACCAAGTCTGGGTAGAGACG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS-3UTR TCA 90 bp TGCAGGAAAGGGACAAAGCAGATGACTGATCCTGTGACGGCAGACTCTGGGCCCGACCTCGGCCTTGGGTaGGTCGAGCCCGTAGCGCCC +
Preference number: 4 (lower is better)
Translates to: CRKGTKQMTDPVTADSGPDLGLG*VEPVAP
Trigger: GGGCGCTACGGGCTCGACTCACCCAAGGCCGAGGTC...GGGCCCAGAGTCTGCCGTCACAGGATCAGTCATCTGCTTTGTCCCTTTCCTGCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS-3UTR CCA 90 bp ACTCTTGATGGTAGAGCCTGGCTTTCCCAAGAGGGGAACAAAGGTGGGACCCTGAGCGGTGCCAGCACCTaGCCGCGGACCTCGGCCTTG +
Preference number: 4 (lower is better)
Translates to: TLDGRAWLSQEGNKGGTLSGAST*PRTSAL
Trigger: CAAGGCCGAGGTCCGCGGCCAGGTGCTGGCACCGCT...CAGGGTCCCACCTTTGTTCCCCTCTTGGGAAAGCCAGGCTCTACCATCAAGAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS-3UTR CCA 90 bp AGCGGAGATGGTGACTTCAGCCCAAGGAACCTGCCTTACTCCTGTTGCTCCTCACGCGGACCTCGGCCTTaGGTGAGTCGAGCCCGTAGC +
Preference number: 4 (lower is better)
Translates to: SGDGDFSPRNLPYSCCSSRGPRP*VSRARS
Trigger: GCTACGGGCTCGACTCACCCAAGGCCGAGGTCCGCG...TGAGGAGCAACAGGAGTAAGGCAGGTTCCTTGGGCTGAAGTCACCATCTCCGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS-3UTR TCA 90 bp CGTGCCCAGGGAACTGTCCCCTTGAGGCTCACCCTCATCTCACCTGCTCTCCCTAGGTACAGTGTTCACTaGGCCAGGGATCCACACAGG +
Preference number: 4 (lower is better)
Translates to: RAQGTVPLRLTLISPALPRYSVH*ARDPHR
Trigger: CCTGTGTGGATCCCTGGCTCAGTGAACACTGTACCT...AGGGAGAGCAGGTGAGATGAGGGTGAGCCTCAAGGGGACAGTTCCCTGGGCACG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS-3UTR CCA 90 bp TGCAGGAAAGGGACAAAGCAGATGACTGATCCTGTGACGGCAGACTCTGGGCCCCAGCAACTCCGTGGATaGGCAGCGGTGCCAGCACCT +
Preference number: 4 (lower is better)
Translates to: CRKGTKQMTDPVTADSGPQQLRG*AAVPAP
Trigger: AGGTGCTGGCACCGCTGCCCATCCACGGAGTTGCTG...GGGCCCAGAGTCTGCCGTCACAGGATCAGTCATCTGCTTTGTCCCTTTCCTGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CAA 72 bp CTCCTGTTGCTCCTCATGACCCGTCTCTACCCAGACTaGGTAGGCTGCACTCTTCCCTTCCACCCGTGCCCA +
Preference number: 4 (lower is better)
Translates to: LLLLLMTRLYPD*VGCTLPFHPCP
Trigger: TGGGCACGGGTGGAAGGGAAGAGTGCAGCCTACCAAGTCTGGGTAGAGACGGGTCATGAGGAGCAACAGGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS-3UTR TCA 90 bp TTTCTGACCACATATTTTGGCATCTCAGTCTCTCGTGCCTCAGAGCAGATGAGAGGTCGATGCGGAACGTaGGCGGGGTGCCGCGGCCGG +
Preference number: 4 (lower is better)
Translates to: FLTTYFGISVSRASEQMRGRCGT*AGCRGR
Trigger: CCGGCCGCGGCACCCCGCTCACGTTCCGCATCGACC...TCTCATCTGCTCTGAGGCACGAGAGACTGAGATGCCAAAATATGTGGTCAGAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS-3UTR GCA 90 bp CCAGGCCCACCTTTCTTGAGTGGGGAAACCTCGCACAATCATTTCTCTACATCAGCGTCGGCCACAGGCTaGAAGTCAGCAGGGCCAGCG +
Preference number: 4 (lower is better)
Translates to: PGPPFLSGETSHNHFSTSASATG*KSAGPA
Trigger: CGCTGGCCCTGCTGACTTGCAGCCTGTGGCCGACGC...TGATGTAGAGAAATGATTGTGCGAGGTTTCCCCACTCAAGAAAGGTGGGCCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CAA 72 bp GTGGACCTAGGAGTTGTGCTGCCCACTTCCAGGGGGTaGACACATCTGACCGTCAAGAAGTCGGCTCACACT +
Preference number: 4 (lower is better)
Translates to: VDLGVVLPTSRG*THLTVKKSAHT
Trigger: AGTGTGAGCCGACTTCTTGACGGTCAGATGTGTCAACCCCCTGGAAGTGGGCAGCACAACTCCTAGGTCCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS-3UTR TCA 90 bp AGCGGAGATGGTGACTTCAGCCCAAGGAACCTGCCTTACTCCTGTTGCTCCTCACTAGAGAGCCACGGCTaGAGTTCTTTGGCGGCATTC +
Preference number: 4 (lower is better)
Translates to: SGDGDFSPRNLPYSCCSSLESHG*SSLAAF
Trigger: GAATGCCGCCAAAGAACTTCAGCCGTGGCTCTCTAG...TGAGGAGCAACAGGAGTAAGGCAGGTTCCTTGGGCTGAAGTCACCATCTCCGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS-3UTR CCA 90 bp ATCAACCATGTGGACCTAGGAGTTGTGCTGCCCACTTCCAGGGGGTTGACACATATACACCAGGCTGCGTaGCGACAGGGAGTTCTGGTG +
Preference number: 4 (lower is better)
Translates to: INHVDLGVVLPTSRGLTHIHQAA*RQGVLV
Trigger: CACCAGAACTCCCTGTCGCCACGCAGCCTGGTGTAT...ATGTGTCAACCCCCTGGAAGTGGGCAGCACAACTCCTAGGTCCACATGGTTGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CAA 72 bp TCCAGGACAGTCAAATATGCCCAACCACTGAAGGGCTaGAGTGCCGAGATGCACCCCCAGCCTCTCAAGTCT +
Preference number: 4 (lower is better)
Translates to: SRTVKYAQPLKG*SAEMHPQPLKS
Trigger: AGACTTGAGAGGCTGGGGGTGCATCTCGGCACTCAAGCCCTTCAGTGGTTGGGCATATTTGACTGTCCTGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS-3UTR GCA 90 bp ATACTTGATGTGTGCTCCTTCTGCCGCAAACCACCCACTGGTGAGAGGAAGTCCGATGGCTTTCTTGGCTaGGTCTCCAAGACGACGCTG +
Preference number: 4 (lower is better)
Translates to: ILDVCSFCRKPPTGERKSDGFLG*VSKTTL
Trigger: CAGCGTCGTCTTGGAGACGCAGCCAAGAAAGCCATC...GGACTTCCTCTCACCAGTGGGTGGTTTGCGGCAGAAGGAGCACACATCAAGTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS-3UTR GCA 90 bp ACTCTTGATGGTAGAGCCTGGCTTTCCCAAGAGGGGAACAAAGGTGGGACCCTGTTTCATACACCAGGCTaGGTGGCGACAGGGAGTTCT +
Preference number: 4 (lower is better)
Translates to: TLDGRAWLSQEGNKGGTLFHTPG*VATGSS
Trigger: AGAACTCCCTGTCGCCACGCAGCCTGGTGTATGAAA...CAGGGTCCCACCTTTGTTCCCCTCTTGGGAAAGCCAGGCTCTACCATCAAGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CAA 72 bp AAGTCTGGTTGCCAGCGCTCCAGTGTTTCTTTCATGTaGGTGCTGAGGCTGGCAGGATGGCACTGGATTGGA +
Preference number: 4 (lower is better)
Translates to: KSGCQRSSVSFM*VLRLAGWHWIG
Trigger: TCCAATCCAGTGCCATCCTGCCAGCCTCAGCACCAACATGAAAGAAACACTGGAGCGCTGGCAACCAGACTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS-3UTR GCA 90 bp TGCAGGAAAGGGACAAAGCAGATGACTGATCCTGTGACGGCAGACTCTGGGCCCGCTTTCTATGCAGACTaGACAGTGATCGAAGTCTGG +
Preference number: 4 (lower is better)
Translates to: CRKGTKQMTDPVTADSGPAFYAD*TVIEVW
Trigger: CCAGACTTCGATCACTGTGCAGTCTGCATAGAAAGC...GGGCCCAGAGTCTGCCGTCACAGGATCAGTCATCTGCTTTGTCCCTTTCCTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS-3UTR TCA 90 bp CTTTCTGACCACATATTTTGGCATCTCAGTCTCTCGTGCCTCAGAGCAGATGAGGTGAGCTCCCCATCTTaGGGAAGAGGCGATATCCCC +
Preference number: 4 (lower is better)
Translates to: LSDHIFWHLSLSCLRADEVSSPS*GRGDIP
Trigger: GGGGATATCGCCTCTTCCTCAAGATGGGGAGCTCAC...CTCATCTGCTCTGAGGCACGAGAGACTGAGATGCCAAAATATGTGGTCAGAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS-3UTR GCA 90 bp GATGTGACCTGTAAATACTGGAATCTGCAGAGAGCCGAGGGGACAGCCAGCCAGTGTGGAAAACATGCTTaGAGGGGAGAACCCGAACAA +
Preference number: 4 (lower is better)
Translates to: DVTCKYWNLQRAEGTASQCGKHA*RGEPEQ
Trigger: TTGTTCGGGTTCTCCCCTGCAAGCATGTTTTCCACA...CTGGCTGGCTGTCCCCTCGGCTCTCTGCAGATTCCAGTATTTACAGGTCACATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS-3UTR GCA 90 bp GATGTGACCTGTAAATACTGGAATCTGCAGAGAGCCGAGGGGACAGCCAGCCAGGTGCCCACTTGTTACTaGAATGTTGATTTCACCCGT +
Preference number: 4 (lower is better)
Translates to: DVTCKYWNLQRAEGTASQVPTCY*NVDFTR
Trigger: ACGGGTGAAATCAACATTGCAGTAACAAGTGGGCAC...CTGGCTGGCTGTCCCCTCGGCTCTCTGCAGATTCCAGTATTTACAGGTCACATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS-3UTR CCA 90 bp GCCTCTCAAGTCTTCATGACTACTCTGTCTTCACTCCGGGTGCACCAGTCAGATACGGCTGAAGTTCTTTaGCGGCATTCGAGTTCCAAC +
Preference number: 4 (lower is better)
Translates to: ASQVFMTTLSSLRVHQSDTAEVL*RHSSSN
Trigger: GTTGGAACTCGAATGCCGCCAAAGAACTTCAGCCGT...ATCTGACTGGTGCACCCGGAGTGAAGACAGAGTAGTCATGAAGACTTGAGAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS-3UTR TCA 90 bp TGGGACCCTGGATGGATACATTCATTACTTCTGGAGACACTCTGGGGACTTTATGGATCACAGCCCAGATaGTCAGCAACTCCGTGGATG +
Preference number: 4 (lower is better)
Translates to: WDPGWIHSLLLETLWGLYGSQPR*SATPWM
Trigger: CATCCACGGAGTTGCTGATCATCTGGGCTGTGATCC...ATAAAGTCCCCAGAGTGTCTCCAGAAGTAATGAATGTATCCATCCAGGGTCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS-3UTR TCA 90 bp AAGGGGGTCAACTTGGATATCTGGAGAGCTATTCTGAGTGAATCCCTTCACAGGCTGGATGAGTCATGGTaGCCGGCTCCTCTTTGGATT +
Preference number: 4 (lower is better)
Translates to: KGVNLDIWRAILSESLHRLDESW*PAPLWI
Trigger: AATCCAAAGAGGAGCCGGTCACCATGACTCATCCAG...CCTGTGAAGGGATTCACTCAGAATAGCTCTCCAGATATCCAAGTTGACCCCCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS-3UTR CCA 90 bp CACTCCGGGTGCACCAGTCAGATACACAGTGAGAACTTTATAAAAAGACGGTCACCCCGAAGTTCTCAGTaGCTCAAGGCCAAGGGAACT +
Preference number: 4 (lower is better)
Translates to: HSGCTSQIHSENFIKRRSPRSSQ*LKAKGT
Trigger: AGTTCCCTTGGCCTTGAGCCACTGAGAACTTCGGGG...TGACCGTCTTTTTATAAAGTTCTCACTGTGTATCTGACTGGTGCACCCGGAGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CAA 72 bp TTGGGGGAACACTGTAATTTAACCCTGAACCCCAACTaGTGCCCAGAGGTACTGCCATTCTTCCCAGATGGA +
Preference number: 4 (lower is better)
Translates to: LGEHCNLTLNPN*CPEVLPFFPDG
Trigger: TCCATCTGGGAAGAATGGCAGTACCTCTGGGCACAAGTTGGGGTTCAGGGTTAAATTACAGTGTTCCCCCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CAA 72 bp CTCACTCGCGCAATAATGCTGCCATCAAACCTCACCTaGGGGGAACACTGTAATTTAACCCTGAACCCCAAC +
Preference number: 4 (lower is better)
Translates to: LTRAIMLPSNLT*GEHCNLTLNPN
Trigger: GTTGGGGTTCAGGGTTAAATTACAGTGTTCCCCCAAGGTGAGGTTTGATGGCAGCATTATTGCGCGAGTGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CAA 72 bp AAGCAAGGCTTAGTGGGCCTTGGGAGTTTTAAACTCTaGATGGTAGAGCCTGGCTTTCCCAAGAGGGGAACA +
Preference number: 4 (lower is better)
Translates to: KQGLVGLGSFKL*MVEPGFPKRGT
Trigger: TGTTCCCCTCTTGGGAAAGCCAGGCTCTACCATCAAGAGTTTAAAACTCCCAAGGCCCACTAAGCCTTGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS-3UTR TCA 90 bp CCAGGCCCACCTTTCTTGAGTGGGGAAACCTCGCACAATCATTTCTCTACATCAACAGCAACCGCATTGTaGAAAGCAGCCCGTGATATT +
Preference number: 4 (lower is better)
Translates to: PGPPFLSGETSHNHFSTSTATAL*KAARDI
Trigger: AATATCACGGGCTGCTTTTCACAATGCGGTTGCTGT...TGATGTAGAGAAATGATTGTGCGAGGTTTCCCCACTCAAGAAAGGTGGGCCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS-3UTR TCA 90 bp CTTTCTGACCACATATTTTGGCATCTCAGTCTCTCGTGCCTCAGAGCAGATGAGATGCAGACTGCACAGTaGTCGAAGTCTGGGTCTGTT +
Preference number: 4 (lower is better)
Translates to: LSDHIFWHLSLSCLRADEMQTAQ*SKSGSV
Trigger: AACAGACCCAGACTTCGATCACTGTGCAGTCTGCAT...CTCATCTGCTCTGAGGCACGAGAGACTGAGATGCCAAAATATGTGGTCAGAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS-3UTR CCA 90 bp TGCAGGAAAGGGACAAAGCAGATGACTGATCCTGTGACGGCAGACTCTGGGCCCTACATTATCAGTACATaGCAGATTTGGCACAATTCC +
Preference number: 4 (lower is better)
Translates to: CRKGTKQMTDPVTADSGPYIIST*QIWHNS
Trigger: GGAATTGTGCCAAATCTGCCATGTACTGATAATGTA...GGGCCCAGAGTCTGCCGTCACAGGATCAGTCATCTGCTTTGTCCCTTTCCTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS-3UTR GCA 90 bp AAGGGGGTCAACTTGGATATCTGGAGAGCTATTCTGAGTGAATCCCTTCACAGGGATTTGTGGAAAACATaGTTGCAGGGGAGAACCCGA +
Preference number: 4 (lower is better)
Translates to: KGVNLDIWRAILSESLHRDLWKT*LQGRTR
Trigger: TCGGGTTCTCCCCTGCAAGCATGTTTTCCACAAATC...CCTGTGAAGGGATTCACTCAGAATAGCTCTCCAGATATCCAAGTTGACCCCCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS-3UTR CCA 90 bp TGGGACCCTGGATGGATACATTCATTACTTCTGGAGACACTCTGGGGACTTTATTCCACACAGGATTTGTaGAAAACATGCTTGCAGGGG +
Preference number: 4 (lower is better)
Translates to: WDPGWIHSLLLETLWGLYSTQDL*KTCLQG
Trigger: CCCCTGCAAGCATGTTTTCCACAAATCCTGTGTGGA...ATAAAGTCCCCAGAGTGTCTCCAGAAGTAATGAATGTATCCATCCAGGGTCCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CAA 72 bp ACAGATGCCTCCCATGTCCAGTGCCTATGTAAATCCTaGTCATCTTATGTCATGCCCATCACAGATGCAGGA +
Preference number: 4 (lower is better)
Translates to: TDASHVQCLCKS*SSYVMPITDAG
Trigger: TCCTGCATCTGTGATGGGCATGACATAAGATGACAAGGATTTACATAGGCACTGGACATGGGAGGCATCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CAA 72 bp GCTGATCCTGGTCCCACAAGTTCCTCATCTGTTAACTaGATGTCATTCTGGATGTGTGGGAAGAGCACACAT +
Preference number: 4 (lower is better)
Translates to: ADPGPTSSSSVN*MSFWMCGKSTH
Trigger: ATGTGTGCTCTTCCCACACATCCAGAATGACATCAAGTTAACAGATGAGGAACTTGTGGGACCAGGATCAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS-3UTR TCA 90 bp AAGGGGGTCAACTTGGATATCTGGAGAGCTATTCTGAGTGAATCCCTTCACAGGGTGAAAAGCAGCCCGTaGTATTTTCTCTTTAAAGGT +
Preference number: 4 (lower is better)
Translates to: KGVNLDIWRAILSESLHRVKSSP*YFLFKG
Trigger: ACCTTTAAAGAGAAAATATCACGGGCTGCTTTTCAC...CCTGTGAAGGGATTCACTCAGAATAGCTCTCCAGATATCCAAGTTGACCCCCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CAA 72 bp TTTTCTGTCCCCGTAAACAACATTGGTGCAGTTTACTaGGGTGAGGTATGGCCACTCAAGAGTCTATCTTAC +
Preference number: 4 (lower is better)
Translates to: FSVPVNNIGAVY*GEVWPLKSLSY
Trigger: GTAAGATAGACTCTTGAGTGGCCATACCTCACCCAAGTAAACTGCACCAATGTTGTTTACGGGGACAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS-3UTR TCA 90 bp AAGGGGGTCAACTTGGATATCTGGAGAGCTATTCTGAGTGAATCCCTTCACAGGGAATATGAGCCACGCTaGAGAAATAATCATCAAAAC +
Preference number: 4 (lower is better)
Translates to: KGVNLDIWRAILSESLHREYEPR*RNNHQN
Trigger: GTTTTGATGATTATTTCTTCAGCGTGGCTCATATTC...CCTGTGAAGGGATTCACTCAGAATAGCTCTCCAGATATCCAAGTTGACCCCCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
3UTR CAA 72 bp GACAGATTAGACATGAAGAAAATGATTAGCTGGGATTaGAGTTTTGGTTATGGAGAAGACAAGGCCGGGCTT +
Preference number: 4 (lower is better)
Translates to: DRLDMKKMISWD*SFGYGEDKAGL
Trigger: AAGCCCGGCCTTGTCTTCTCCATAACCAAAACTCAAATCCCAGCTAATCATTTTCTTCATGTCTAATCTGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS TCA 90 bp GATGGGCAGCGGTGCCAGCACCTGGCCGCGGACCTCGGCCTTGGGTaGGTCGAGCCCGTAGCGCCCGCGGTCGATGCGGAACGTGAGCGG +
Preference number: 5 (lower is better)
Translates to: DGQRCQHLAADLGLG*VEPVAPAVDAERER
Trigger: CCGCTCACGTTCCGCATCGACCGCGGGCGCTACGGGCTCGACTCACCCAAGGCCGAGGTCCGCGGCCAGGTGCTGGCACCGCTGCCCATC
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054684.14
ENSMUST00000102776.5
ENSMUST00000238748.2
CDS GCA 90 bp TGTAGTACTCCTGGCTCGCGTTGTCCGCTCGCGTCGGCCACAGGCTaGAAGTCAGCAGGGCCAGCGCCGCGAGCCGGGCCGGGCCCGCTC +
Preference number: 5 (lower is better)
Translates to: CSTPGSRCPLASATG*KSAGPAPRAGPGPL
Trigger: GAGCGGGCCCGGCCCGGCTCGCGGCGCTGGCCCTGCTGACTTGCAGCCTGTGGCCGACGCGAGCGGACAACGCGAGCCAGGAGTACTACA
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054684.14
ENSMUST00000102776.5
ENSMUST00000238748.2
CDS-3UTR CAA 90 bp ACTCTTGATGGTAGAGCCTGGCTTTCCCAAGAGGGGAACAAAGGTGGGACCCTGTACTCCTGGCTCGCGTaGTCCGCTCGCGTCGGCCAC +
Preference number: 5 (lower is better)
Translates to: TLDGRAWLSQEGNKGGTLYSWLA*SARVGH
Trigger: GTGGCCGACGCGAGCGGACAACGCGAGCCAGGAGTA...CAGGGTCCCACCTTTGTTCCCCTCTTGGGAAAGCCAGGCTCTACCATCAAGAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS CCA 90 bp GAGCTCCCCATCTTGAGGAAGAGGCGATATCCCCGAAGTTCTCAGTaGCTCAAGGCCAAGGGAACTGTCACCGGCAAGGTCACCAAGGGC +
Preference number: 5 (lower is better)
Translates to: ELPILRKRRYPRSSQ*LKAKGTVTGKVTKG
Trigger: GCCCTTGGTGACCTTGCCGGTGACAGTTCCCTTGGCCTTGAGCCACTGAGAACTTCGGGGATATCGCCTCTTCCTCAAGATGGGGAGCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054684.14
ENSMUST00000102776.5
ENSMUST00000238748.2
CDS GCA 90 bp TGGCTCAAGGCCAAGGGAACTGTCACCGGCAAGGTCACCAAGGGCTaGTCTCCGGTTAACCGCTTGGGTTCTGGTCAGCCTTTCCATATC +
Preference number: 5 (lower is better)
Translates to: WLKAKGTVTGKVTKG*SPVNRLGSGQPFHI
Trigger: GATATGGAAAGGCTGACCAGAACCCAAGCGGTTAACCGGAGAGCAGCCCTTGGTGACCTTGCCGGTGACAGTTCCCTTGGCCTTGAGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054684.14
ENSMUST00000102776.5
ENSMUST00000238748.2
CDS GCA 90 bp GCGTGGCGACAGGGAGTTCTGGTGAAAGACGTGCCCACTTGTTACTaGAATGTTGATTTCACCCGTGCGAGGAGTGAGCTCCCCATCTTG +
Preference number: 5 (lower is better)
Translates to: AWRQGVLVKDVPTCY*NVDFTRARSELPIL
Trigger: CAAGATGGGGAGCTCACTCCTCGCACGGGTGAAATCAACATTGCAGTAACAAGTGGGCACGTCTTTCACCAGAACTCCCTGTCGCCACGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS-3UTR CAA 90 bp GATGTGACCTGTAAATACTGGAATCTGCAGAGAGCCGAGGGGACAGCCAGCCAGTCTCCGGTTAACCGCTaGGGTTCTGGTCAGCCTTTC +
Preference number: 5 (lower is better)
Translates to: DVTCKYWNLQRAEGTASQSPVNR*GSGQPF
Trigger: GAAAGGCTGACCAGAACCCAAGCGGTTAACCGGAGA...CTGGCTGGCTGTCCCCTCGGCTCTCTGCAGATTCCAGTATTTACAGGTCACATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS-3UTR CAA 90 bp AGCGGAGATGGTGACTTCAGCCCAAGGAACCTGCCTTACTCCTGTTGCTCCTCAAGTGAGCTCCCCATCTaGAGGAAGAGGCGATATCCC +
Preference number: 5 (lower is better)
Translates to: SGDGDFSPRNLPYSCCSSSELPI*RKRRYP
Trigger: GGGATATCGCCTCTTCCTCAAGATGGGGAGCTCACT...TGAGGAGCAACAGGAGTAAGGCAGGTTCCTTGGGCTGAAGTCACCATCTCCGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS TCA 90 bp ACTGCAATGTTGATTTCACCCGTGCGAGGAGTGAGCTCCCCATCTTaGGGAAGAGGCGATATCCCCGAAGTTCTCAGTGGCTCAAGGCCA +
Preference number: 5 (lower is better)
Translates to: TAMLISPVRGVSSPS*GRGDIPEVLSGSRP
Trigger: TGGCCTTGAGCCACTGAGAACTTCGGGGATATCGCCTCTTCCTCAAGATGGGGAGCTCACTCCTCGCACGGGTGAAATCAACATTGCAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054684.14
ENSMUST00000102776.5
ENSMUST00000238748.2
CDS-3UTR CAA 90 bp GATGTGACCTGTAAATACTGGAATCTGCAGAGAGCCGAGGGGACAGCCAGCCAGGACAAAGAACCGTGTTaGAGGATCACAGCCCAGATG +
Preference number: 5 (lower is better)
Translates to: DVTCKYWNLQRAEGTASQDKEPC*RITAQM
Trigger: CATCTGGGCTGTGATCCTCAAACACGGTTCTTTGTC...CTGGCTGGCTGTCCCCTCGGCTCTCTGCAGATTCCAGTATTTACAGGTCACATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS-3UTR CAA 90 bp GATGTGACCTGTAAATACTGGAATCTGCAGAGAGCCGAGGGGACAGCCAGCCAGCTTGTTACTGCAATGTaGATTTCACCCGTGCGAGGA +
Preference number: 5 (lower is better)
Translates to: DVTCKYWNLQRAEGTASQLVTAM*ISPVRG
Trigger: TCCTCGCACGGGTGAAATCAACATTGCAGTAACAAG...CTGGCTGGCTGTCCCCTCGGCTCTCTGCAGATTCCAGTATTTACAGGTCACATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS-3UTR CAA 90 bp CCTCTCATCCCTCCAGGTGTCCCACCTTGCCGTCTGCCTAAGGCATGTTCTGAGGAGTTCCAACAGCTATaGTCATTTGTACAGAGATGT +
Preference number: 5 (lower is better)
Translates to: PLIPPGVPPCRLPKACSEEFQQL*SFVQRC
Trigger: ACATCTCTGTACAAATGACAATAGCTGTTGGAACTC...CTCAGAACATGCCTTAGGCAGACGGCAAGGTGGGACACCTGGAGGGATGAGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS-3UTR CAA 90 bp ATCAACCATGTGGACCTAGGAGTTGTGCTGCCCACTTCCAGGGGGTTGACACATGGATCCACACAGGATTaGTGGAAAACATGCTTGCAG +
Preference number: 5 (lower is better)
Translates to: INHVDLGVVLPTSRGLTHGSTQD*WKTCLQ
Trigger: CTGCAAGCATGTTTTCCACAAATCCTGTGTGGATCC...ATGTGTCAACCCCCTGGAAGTGGGCAGCACAACTCCTAGGTCCACATGGTTGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS CCA 90 bp AGAAGGTTCAATTGTGGAGAATTCACTTTCATACACCAGGCTGCGTaGCGACAGGGAGTTCTGGTGAAAGACGTGCCCACTTGTTACTGC +
Preference number: 5 (lower is better)
Translates to: RRFNCGEFTFIHQAA*RQGVLVKDVPTCYC
Trigger: GCAGTAACAAGTGGGCACGTCTTTCACCAGAACTCCCTGTCGCCACGCAGCCTGGTGTATGAAAGTGAATTCTCCACAATTGAACCTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS-3UTR CAA 90 bp ATCAACCATGTGGACCTAGGAGTTGTGCTGCCCACTTCCAGGGGGTTGACACATAAGGCGATCCACTGTTaGATATTAGGAGGGACAAAG +
Preference number: 5 (lower is better)
Translates to: INHVDLGVVLPTSRGLTHKAIHC*ILGGTK
Trigger: CTTTGTCCCTCCTAATATCAAACAGTGGATCGCCTT...ATGTGTCAACCCCCTGGAAGTGGGCAGCACAACTCCTAGGTCCACATGGTTGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS GCA 90 bp CCAAAGAAGGTTCAATTGTGGAGAATTCACTTTCATACACCAGGCTaGGTGGCGACAGGGAGTTCTGGTGAAAGACGTGCCCACTTGTTA +
Preference number: 5 (lower is better)
Translates to: PKKVQLWRIHFHTPG*VATGSSGERRAHLL
Trigger: TAACAAGTGGGCACGTCTTTCACCAGAACTCCCTGTCGCCACGCAGCCTGGTGTATGAAAGTGAATTCTCCACAATTGAACCTTCTTTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS-3UTR CAA 90 bp CTTTCTGACCACATATTTTGGCATCTCAGTCTCTCGTGCCTCAGAGCAGATGAGTTACTGATGGCTTTCTaGGCTGCGTCTCCAAGACGA +
Preference number: 5 (lower is better)
Translates to: LSDHIFWHLSLSCLRADELLMAF*AASPRR
Trigger: TCGTCTTGGAGACGCAGCCAAGAAAGCCATCAGTAA...CTCATCTGCTCTGAGGCACGAGAGACTGAGATGCCAAAATATGTGGTCAGAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS GCA 90 bp TGCAGGGGAGAACCCGAACAACATCATTCTGCTTATAGCTTTCTATaGAGACTGCACAGTGATCGAAGTCTGGGTCTGTTTCCTTATCGC +
Preference number: 5 (lower is better)
Translates to: CRGEPEQHHSAYSFL*RLHSDRSLGLFPYR
Trigger: GCGATAAGGAAACAGACCCAGACTTCGATCACTGTGCAGTCTGCATAGAAAGCTATAAGCAGAATGATGTTGTTCGGGTTCTCCCCTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054684.14
ENSMUST00000102776.5
ENSMUST00000238748.2
CDS-3UTR CAA 90 bp AAGCAAGGTCCTAACACAGGCACCTCAGTCCCAGCATTCCTTCTGGTCCTTTTCCCAAAGAAGGTTCAATaGTGGAGAATTCACTTTCAT +
Preference number: 5 (lower is better)
Translates to: KQGPNTGTSVPAFLLVLFPKKVQ*WRIHFH
Trigger: ATGAAAGTGAATTCTCCACAATTGAACCTTCTTTGG...GAAAAGGACCAGAAGGAATGCTGGGACTGAGGTGCCTGTGTTAGGACCTTGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS GCA 90 bp GAGAACCCGAACAACATCATTCTGCTTATAGCTTTCTATGCAGACTaGACAGTGATCGAAGTCTGGGTCTGTTTCCTTATCGCCCTTTTT +
Preference number: 5 (lower is better)
Translates to: ENPNNIILLIAFYAD*TVIEVWVCFLIALF
Trigger: AAAAAGGGCGATAAGGAAACAGACCCAGACTTCGATCACTGTGCAGTCTGCATAGAAAGCTATAAGCAGAATGATGTTGTTCGGGTTCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054684.14
ENSMUST00000102776.5
ENSMUST00000238748.2
CDS CCA 90 bp ATTCTGCTTATAGCTTTCTATGCAGACTGCACAGTGATCGAAGTCTaGGTCTGTTTCCTTATCGCCCTTTTTCACCGTTCTAGTTGTCAA +
Preference number: 5 (lower is better)
Translates to: ILLIAFYADCTVIEV*VCFLIALFHRSSCQ
Trigger: TTGACAACTAGAACGGTGAAAAAGGGCGATAAGGAAACAGACCCAGACTTCGATCACTGTGCAGTCTGCATAGAAAGCTATAAGCAGAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054684.14
ENSMUST00000102776.5
ENSMUST00000238748.2
CDS GCA 72 bp CCTGGCTCGCGTTGTCCGCTCGCGTCGGCCACAGGCTaGAAGTCAGCAGGGCCAGCGCCGCGAGCCGGGCCG +
Preference number: 6 (lower is better)
Translates to: PGSRCPLASATG*KSAGPAPRAGP
Trigger: CGGCCCGGCTCGCGGCGCTGGCCCTGCTGACTTGCAGCCTGTGGCCGACGCGAGCGGACAACGCGAGCCAGG
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054684.14
ENSMUST00000102776.5
ENSMUST00000238748.2
CDS TCA 72 bp AGTCGAGCCCGTAGCGCCCGCGGTCGATGCGGAACGTaGGCGGGGTGCCGCGGCCGGGCTCCTGCACCGTCA +
Preference number: 6 (lower is better)
Translates to: SRARSARGRCGT*AGCRGRAPAPS
Trigger: TGACGGTGCAGGAGCCCGGCCGCGGCACCCCGCTCACGTTCCGCATCGACCGCGGGCGCTACGGGCTCGACT
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054684.14
ENSMUST00000102776.5
ENSMUST00000238748.2
CDS CCA 72 bp GCAGCGGTGCCAGCACCTGGCCGCGGACCTCGGCCTTaGGTGAGTCGAGCCCGTAGCGCCCGCGGTCGATGC +
Preference number: 6 (lower is better)
Translates to: AAVPAPGRGPRP*VSRARSARGRC
Trigger: GCATCGACCGCGGGCGCTACGGGCTCGACTCACCCAAGGCCGAGGTCCGCGGCCAGGTGCTGGCACCGCTGC
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054684.14
ENSMUST00000102776.5
ENSMUST00000238748.2
CDS TCA 72 bp CGGTGCCAGCACCTGGCCGCGGACCTCGGCCTTGGGTaGGTCGAGCCCGTAGCGCCCGCGGTCGATGCGGAA +
Preference number: 6 (lower is better)
Translates to: RCQHLAADLGLG*VEPVAPAVDAE
Trigger: TTCCGCATCGACCGCGGGCGCTACGGGCTCGACTCACCCAAGGCCGAGGTCCGCGGCCAGGTGCTGGCACCG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054684.14
ENSMUST00000102776.5
ENSMUST00000238748.2
CDS CCA 72 bp TCAGCAACTCCGTGGATGGGCAGCGGTGCCAGCACCTaGCCGCGGACCTCGGCCTTGGGTGAGTCGAGCCCG +
Preference number: 6 (lower is better)
Translates to: SATPWMGSGAST*PRTSALGESSP
Trigger: CGGGCTCGACTCACCCAAGGCCGAGGTCCGCGGCCAGGTGCTGGCACCGCTGCCCATCCACGGAGTTGCTGA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054684.14
ENSMUST00000102776.5
ENSMUST00000238748.2
CDS GCA 72 bp GCCAAGGGAACTGTCACCGGCAAGGTCACCAAGGGCTaGTCTCCGGTTAACCGCTTGGGTTCTGGTCAGCCT +
Preference number: 6 (lower is better)
Translates to: AKGTVTGKVTKG*SPVNRLGSGQP
Trigger: AGGCTGACCAGAACCCAAGCGGTTAACCGGAGAGCAGCCCTTGGTGACCTTGCCGGTGACAGTTCCCTTGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054684.14
ENSMUST00000102776.5
ENSMUST00000238748.2
CDS CCA 72 bp ATCTTGAGGAAGAGGCGATATCCCCGAAGTTCTCAGTaGCTCAAGGCCAAGGGAACTGTCACCGGCAAGGTC +
Preference number: 6 (lower is better)
Translates to: ILRKRRYPRSSQ*LKAKGTVTGKV
Trigger: GACCTTGCCGGTGACAGTTCCCTTGGCCTTGAGCCACTGAGAACTTCGGGGATATCGCCTCTTCCTCAAGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054684.14
ENSMUST00000102776.5
ENSMUST00000238748.2
CDS CAA 72 bp GGCAAGGTCACCAAGGGCTGCTCTCCGGTTAACCGCTaGGGTTCTGGTCAGCCTTTCCATATCAAAGGCTAC +
Preference number: 6 (lower is better)
Translates to: GKVTKGCSPVNR*GSGQPFHIKGY
Trigger: GTAGCCTTTGATATGGAAAGGCTGACCAGAACCCAAGCGGTTAACCGGAGAGCAGCCCTTGGTGACCTTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054684.14
ENSMUST00000102776.5
ENSMUST00000238748.2
CDS CAA 72 bp GTTGATTTCACCCGTGCGAGGAGTGAGCTCCCCATCTaGAGGAAGAGGCGATATCCCCGAAGTTCTCAGTGG +
Preference number: 6 (lower is better)
Translates to: VDFTRARSELPI*RKRRYPRSSQW
Trigger: CCACTGAGAACTTCGGGGATATCGCCTCTTCCTCAAGATGGGGAGCTCACTCCTCGCACGGGTGAAATCAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054684.14
ENSMUST00000102776.5
ENSMUST00000238748.2
CDS CAA 90 bp TACTGCAATGTTGATTTCACCCGTGCGAGGAGTGAGCTCCCCATCTaGAGGAAGAGGCGATATCCCCGAAGTTCTCAGTGGCTCAAGGCC +
Preference number: 6 (lower is better)
Translates to: YCNVDFTRARSELPI*RKRRYPRSSQWLKA
Trigger: GGCCTTGAGCCACTGAGAACTTCGGGGATATCGCCTCTTCCTCAAGATGGGGAGCTCACTCCTCGCACGGGTGAAATCAACATTGCAGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054684.14
ENSMUST00000102776.5
ENSMUST00000238748.2
CDS CCA 72 bp GCAAGGTCACCAAGGGCTGCTCTCCGGTTAACCGCTTaGGTTCTGGTCAGCCTTTCCATATCAAAGGCTACA +
Preference number: 6 (lower is better)
Translates to: ARSPRAALRLTA*VLVSLSISKAT
Trigger: TGTAGCCTTTGATATGGAAAGGCTGACCAGAACCCAAGCGGTTAACCGGAGAGCAGCCCTTGGTGACCTTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054684.14
ENSMUST00000102776.5
ENSMUST00000238748.2
CDS GCA 72 bp CGTTCTAGTTGTCAATTTACTGATGGCTTTCTTGGCTaGGTCTCCAAGACGACGCTGGTTCCTGTCCCGAGC +
Preference number: 6 (lower is better)
Translates to: RSSCQFTDGFLG*VSKTTLVPVPS
Trigger: GCTCGGGACAGGAACCAGCGTCGTCTTGGAGACGCAGCCAAGAAAGCCATCAGTAAATTGACAACTAGAACG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054684.14
ENSMUST00000102776.5
ENSMUST00000238748.2
CDS GCA 72 bp CAGGGAGTTCTGGTGAAAGACGTGCCCACTTGTTACTaGAATGTTGATTTCACCCGTGCGAGGAGTGAGCTC +
Preference number: 6 (lower is better)
Translates to: QGVLVKDVPTCY*NVDFTRARSEL
Trigger: GAGCTCACTCCTCGCACGGGTGAAATCAACATTGCAGTAACAAGTGGGCACGTCTTTCACCAGAACTCCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS CAA 90 bp ACTGTCACCGGCAAGGTCACCAAGGGCTGCTCTCCGGTTAACCGCTaGGGTTCTGGTCAGCCTTTCCATATCAAAGGCTACATTATCAGT +
Preference number: 6 (lower is better)
Translates to: TVTGKVTKGCSPVNR*GSGQPFHIKGYIIS
Trigger: ACTGATAATGTAGCCTTTGATATGGAAAGGCTGACCAGAACCCAAGCGGTTAACCGGAGAGCAGCCCTTGGTGACCTTGCCGGTGACAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054684.14
ENSMUST00000102776.5
ENSMUST00000238748.2
CDS CAA 90 bp CAAGGCGATCCACTGTTTGATATTAGGAGGGACAAAGAACCGTGTTaGAGGATCACAGCCCAGATGATCAGCAACTCCGTGGATGGGCAG +
Preference number: 6 (lower is better)
Translates to: QGDPLFDIRRDKEPC*RITAQMISNSVDGQ
Trigger: CTGCCCATCCACGGAGTTGCTGATCATCTGGGCTGTGATCCTCAAACACGGTTCTTTGTCCCTCCTAATATCAAACAGTGGATCGCCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054684.14
ENSMUST00000102776.5
ENSMUST00000238748.2
CDS TCA 72 bp TCATACACCAGGCTGCGTGGCGACAGGGAGTTCTGGTaGAAGACGTGCCCACTTGTTACTGCAATGTTGATT +
Preference number: 6 (lower is better)
Translates to: SYTRLRGDREFW*KTCPLVTAMLI
Trigger: AATCAACATTGCAGTAACAAGTGGGCACGTCTTTCACCAGAACTCCCTGTCGCCACGCAGCCTGGTGTATGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS GCA 72 bp GTTCAATTGTGGAGAATTCACTTTCATACACCAGGCTaGGTGGCGACAGGGAGTTCTGGTGAAAGACGTGCC +
Preference number: 6 (lower is better)
Translates to: VQLWRIHFHTPG*VATGSSGERRA
Trigger: GGCACGTCTTTCACCAGAACTCCCTGTCGCCACGCAGCCTGGTGTATGAAAGTGAATTCTCCACAATTGAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS CCA 72 bp AATTGTGGAGAATTCACTTTCATACACCAGGCTGCGTaGCGACAGGGAGTTCTGGTGAAAGACGTGCCCACT +
Preference number: 6 (lower is better)
Translates to: NCGEFTFIHQAA*RQGVLVKDVPT
Trigger: AGTGGGCACGTCTTTCACCAGAACTCCCTGTCGCCACGCAGCCTGGTGTATGAAAGTGAATTCTCCACAATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS CAA 72 bp GTACAGTGTTCACTGAGCCAGGGATCCACACAGGATTaGTGGAAAACATGCTTGCAGGGGAGAACCCGAACA +
Preference number: 6 (lower is better)
Translates to: VQCSLSQGSTQD*WKTCLQGRTRT
Trigger: TGTTCGGGTTCTCCCCTGCAAGCATGTTTTCCACAAATCCTGTGTGGATCCCTGGCTCAGTGAACACTGTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054684.14
ENSMUST00000102776.5
ENSMUST00000238748.2
CDS CCA 72 bp ATAGCTTTCTATGCAGACTGCACAGTGATCGAAGTCTaGGTCTGTTTCCTTATCGCCCTTTTTCACCGTTCT +
Preference number: 6 (lower is better)
Translates to: IAFYADCTVIEV*VCFLIALFHRS
Trigger: AGAACGGTGAAAAAGGGCGATAAGGAAACAGACCCAGACTTCGATCACTGTGCAGTCTGCATAGAAAGCTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054684.14
ENSMUST00000102776.5
ENSMUST00000238748.2
CDS GCA 72 bp GAACCCGAACAACATCATTCTGCTTATAGCTTTCTATaGAGACTGCACAGTGATCGAAGTCTGGGTCTGTTT +
Preference number: 6 (lower is better)
Translates to: EPEQHHSAYSFL*RLHSDRSLGLF
Trigger: AAACAGACCCAGACTTCGATCACTGTGCAGTCTGCATAGAAAGCTATAAGCAGAATGATGTTGTTCGGGTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054684.14
ENSMUST00000102776.5
ENSMUST00000238748.2
CDS CCA 72 bp TGTTCTCATCATACATGTCCAAAGAAGGTTCAATTGTaGAGAATTCACTTTCATACACCAGGCTGCGTGGCG +
Preference number: 6 (lower is better)
Translates to: CSHHTCPKKVQL*RIHFHTPGCVA
Trigger: CGCCACGCAGCCTGGTGTATGAAAGTGAATTCTCCACAATTGAACCTTCTTTGGACATGTATGATGAGAACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238748.2
CDS GCA 72 bp AACAACATCATTCTGCTTATAGCTTTCTATGCAGACTaGACAGTGATCGAAGTCTGGGTCTGTTTCCTTATC +
Preference number: 6 (lower is better)
Translates to: NNIILLIAFYAD*TVIEVWVCFLI
Trigger: GATAAGGAAACAGACCCAGACTTCGATCACTGTGCAGTCTGCATAGAAAGCTATAAGCAGAATGATGTTGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054684.14
ENSMUST00000102776.5
ENSMUST00000238748.2
CDS CAA 90 bp GCTGAAGTTCTTTGGCGGCATTCGAGTTCCAACAGCTATTGTCATTaGTACAGAGATGTTTTTCTCCAGATAACTCAAAATATCCTTACC +
Preference number: 6 (lower is better)
Translates to: AEVLWRHSSSNSYCH*YRDVFLQITQNILT
Trigger: GGTAAGGATATTTTGAGTTATCTGGAGAAAAACATCTCTGTACAAATGACAATAGCTGTTGGAACTCGAATGCCGCCAAAGAACTTCAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054684.14
ENSMUST00000102776.5
ENSMUST00000238748.2