Pregenerated sensors for RNF13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036503Ensembl transcript IDs: ENSMUST00000041826.14, ENSMUST00000197205.5, ENSMUST00000198214.5, ENSMUST00000199041.2, ENSMUST00000200497.5
Found 85 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGTCCTAAGCAGGCCCACGCTCTCAGCTGCCTGCTGCAGCCGCTATaGCAGGTCTTCCTAGCATGCTGCCCCCTCCCCCACAGACCCTCC | + |
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Preference number: 1 (lower is better) Translates to: CPKQAHALSCLLQPL*QVFLACCPLPHRPS Trigger: GGAGGGTCTGTGGGGGAGGGGGCAGCATGCTAGGAAGACCTGGCATAGCGGCTGCAGCAGGCAGCTGAGAGCGTGGGCCTGCTTAGGACA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000198214.5 |
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| 3UTR GCA 90 bp | ACTTTTTCACAGATGATTTGTCCTAAGCAGGCCCACGCTCTCAGCTaGCTGCTGCAGCCGCTATGCCAGGTCTTCCTAGCATGCTGCCCC | + |
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Preference number: 1 (lower is better) Translates to: TFSQMICPKQAHALS*LLQPLCQVFLACCP Trigger: GGGGCAGCATGCTAGGAAGACCTGGCATAGCGGCTGCAGCAGGCAGCTGAGAGCGTGGGCCTGCTTAGGACAAATCATCTGTGAAAAAGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000198214.5 |
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| 3UTR TCA 90 bp | TATTCATCTGGGTTTTTAGAAACAGTGCTCTGTAGCTGTTTCCTCTaGACTATAAAATTCATGCGGGAGGACTGCGATTCAGAATATTCC | + |
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Preference number: 1 (lower is better) Translates to: YSSGFLETVLCSCFL*TIKFMREDCDSEYS Trigger: GGAATATTCTGAATCGCAGTCCTCCCGCATGAATTTTATAGTTCAGAGGAAACAGCTACAGAGCACTGTTTCTAAAAACCCAGATGAATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000198214.5 |
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| 3UTR-3UTR TCA 90 bp | CTGCTGCAGCCGCTATGCCAGGTCTTCCTAGCATGCTGCCCCCTCCCCCACAGATGTAGCTGTTTCCTCTaGACTATAAAATTCATGCGG | + |
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Preference number: 2 (lower is better) Translates to: LLQPLCQVFLACCPLPHRCSCFL*TIKFMR Trigger: CCGCATGAATTTTATAGTTCAGAGGAAACAGCTACA...TCTGTGGGGGAGGGGGCAGCATGCTAGGAAGACCTGGCATAGCGGCTGCAGCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000198214.5 |
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| 3UTR-3UTR TCA 90 bp | TTTGTCCTAAGCAGGCCCACGCTCTCAGCTGCCTGCTGCAGCCGCTATGCCAGGGTGTGGCCTATGGGATaGATGATAAAATGTAACTTC | + |
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Preference number: 2 (lower is better) Translates to: FVLSRPTLSAACCSRYARVWPMG*MIKCNF Trigger: GAAGTTACATTTTATCATTCATCCCATAGGCCACAC...CCTGGCATAGCGGCTGCAGCAGGCAGCTGAGAGCGTGGGCCTGCTTAGGACAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198214.5 |
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| 3UTR CAA 90 bp | ACGGGCAACACCATACTTCTGCCTCTCAAGGGAAATGGTGGCAGATaGCCCGGCATAAGACAAGGAGCTAGGGAGTTCATGTTCCTCCTA | + |
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Preference number: 2 (lower is better) Translates to: TGNTILLPLKGNGGR*PGIRQGAREFMFLL Trigger: TAGGAGGAACATGAACTCCCTAGCTCCTTGTCTTATGCCGGGCAATCTGCCACCATTTCCCTTGAGAGGCAGAAGTATGGTGTTGCCCGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197205.5 |
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| 3UTR-3UTR TCA 90 bp | ACTCAGGGAAGTTTAACGGGCAACACCATACTTCTGCCTCTCAAGGGAAATGGTCCCAGAGAGCTAATTTaGTGCCTGAGTTACAGCACC | + |
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Preference number: 2 (lower is better) Translates to: TQGSLTGNTILLPLKGNGPRELI*CLSYST Trigger: GGTGCTGTAACTCAGGCATCAAATTAGCTCTCTGGG...ACCATTTCCCTTGAGAGGCAGAAGTATGGTGTTGCCCGTTAAACTTCCCTGAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197205.5 |
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| 3UTR-3UTR CCA 90 bp | TATGCGCAAATAAACATTATAAGGGAAGTCAACCAACCACCGGAAAGTCACACACAAATGACTGGGTCCTaGCAGAAGCTGAGGGTGGAA | + |
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Preference number: 2 (lower is better) Translates to: YAQINIIREVNQPPESHTQMTGS*QKLRVE Trigger: TTCCACCCTCAGCTTCTGCCAGGACCCAGTCATTTG...TGTGTGACTTTCCGGTGGTTGGTTGACTTCCCTTATAATGTTTATTTGCGCATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197205.5 |
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| 3UTR-3UTR TCA 90 bp | CATCTTAAGGTGGTGTATGACTCCATCATTCTCCTTTATAGCACCCTGCATATACCCAGAGAGCTAATTTaGTGCCTGAGTTACAGCACC | + |
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Preference number: 2 (lower is better) Translates to: HLKVVYDSIILLYSTLHIPRELI*CLSYST Trigger: GGTGCTGTAACTCAGGCATCAAATTAGCTCTCTGGG...TATATGCAGGGTGCTATAAAGGAGAATGATGGAGTCATACACCACCTTAAGATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000041826.14 ENSMUST00000197205.5 ENSMUST00000200497.5 |
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| 3UTR-3UTR CCA 90 bp | GTGAAGTGGCTGTATACTATTGGAGATAAGTATCAGAGATCAAATAGCCTGTTTGCCTCTCAAGGGAAATaGTGGCAGATTGCCCGGCAT | + |
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Preference number: 2 (lower is better) Translates to: VKWLYTIGDKYQRSNSLFASQGK*WQIARH Trigger: ATGCCGGGCAATCTGCCACCATTTCCCTTGAGAGGC...AAACAGGCTATTTGATCTCTGATACTTATCTCCAATAGTATACAGCCACTTCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197205.5 |
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| 3UTR-3UTR TCA 90 bp | CTCACAAGACCTCCAAATTCACATGAATTCACATGGCCCTTCTCAAAGATTATCGCCATTTCCTCTATGTaGTATGACTCTGCGACTCCT | + |
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Preference number: 2 (lower is better) Translates to: LTRPPNSHEFTWPFSKIIAISSM*YDSATP Trigger: AGGAGTCGCAGAGTCATATCACATAGAGGAAATGGC...GATAATCTTTGAGAAGGGCCATGTGAATTCATGTGAATTTGGAGGTCTTGTGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198214.5 |
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| 3UTR-3UTR TCA 90 bp | CTATGCCAGTTCATTCTTGAATTATTCATCTGGGTTTTTAGAAACAGTGCTCTGGAGATGCAGCTTTTCTaGGTCGTCGTCACCCATGCT | + |
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Preference number: 2 (lower is better) Translates to: LCQFILELFIWVFRNSALEMQLF*VVVTHA Trigger: AGCATGGGTGACGACGACTCAGAAAAGCTGCATCTC...CAGAGCACTGTTTCTAAAAACCCAGATGAATAATTCAAGAATGAACTGGCATAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000198214.5 |
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| 3UTR-3UTR CCA 90 bp | TATGCGCAAATAAACATTATAAGGGAAGTCAACCAACCACCGGAAAGTCACACAGAGTCCGAGTCACCTTaGGAAGGAACAACCTTTTGT | + |
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Preference number: 2 (lower is better) Translates to: YAQINIIREVNQPPESHTESESP*EGTTFC Trigger: ACAAAAGGTTGTTCCTTCCCAAGGTGACTCGGACTC...TGTGTGACTTTCCGGTGGTTGGTTGACTTCCCTTATAATGTTTATTTGCGCATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197205.5 |
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| 3UTR-3UTR TCA 90 bp | GTGAAGTGGCTGTATACTATTGGAGATAAGTATCAGAGATCAAATAGCCTGTTTCCCAGAGAGCTAATTTaGTGCCTGAGTTACAGCACC | + |
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Preference number: 2 (lower is better) Translates to: VKWLYTIGDKYQRSNSLFPRELI*CLSYST Trigger: GGTGCTGTAACTCAGGCATCAAATTAGCTCTCTGGG...AAACAGGCTATTTGATCTCTGATACTTATCTCCAATAGTATACAGCCACTTCAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000041826.14 ENSMUST00000197205.5 ENSMUST00000200497.5 |
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| 3UTR-3UTR TCA 90 bp | CTCACAAGACCTCCAAATTCACATGAATTCACATGGCCCTTCTCAAAGATTATCAAATGTAACTTCAGGTaGTCAGTCTGTGGGTGGAAC | + |
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Preference number: 2 (lower is better) Translates to: LTRPPNSHEFTWPFSKIIKCNFR*SVCGWN Trigger: GTTCCACCCACAGACTGATCACCTGAAGTTACATTT...GATAATCTTTGAGAAGGGCCATGTGAATTCATGTGAATTTGGAGGTCTTGTGAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198214.5 |
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| 3UTR-3UTR TCA 90 bp | ATTGGAGATAAGTATCAGAGATCAAATAGCCTGTTTCAGGAACTTGATTACACTGTCGTCCTCGTAGTCTaGAGACTCTGTCATGTTGTG | + |
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Preference number: 2 (lower is better) Translates to: IGDKYQRSNSLFQELDYTVVLVV*RLCHVV Trigger: CACAACATGACAGAGTCTTCAGACTACGAGGACGAC...AGTGTAATCAAGTTCCTGAAACAGGCTATTTGATCTCTGATACTTATCTCCAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197205.5 |
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| 3UTR-3UTR GCA 90 bp | TTATTTGTAACAAGGCAATACTTAAGGGTCTCTCTAAGAGCAGCAAATGCAACTGCAACACCATACTTCTaGCTCTCAAGGGAAATGGTG | + |
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Preference number: 2 (lower is better) Translates to: LFVTRQYLRVSLRAANATATPYF*LSREMV Trigger: CACCATTTCCCTTGAGAGGCAGAAGTATGGTGTTGC...AGTTGCATTTGCTGCTCTTAGAGAGACCCTTAAGTATTGCCTTGTTACAAATAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197205.5 |
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| 3UTR-3UTR TCA 90 bp | AACCCAACCACACTAGGCAACTTTTATGAAAGTGAGAGTTGTTTTAGCTCATGCGACATTTGCAGACTGTaGTCTAGGTCTTCATTTCAA | + |
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Preference number: 2 (lower is better) Translates to: NPTTLGNFYESESCFSSCDICRL*SRSSFQ Trigger: TTGAAATGAAGACCTAGATCACAGTCTGCAAATGTC...GCATGAGCTAAAACAACTCTCACTTTCATAAAAGTTGCCTAGTGTGGTTGGGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000041826.14 ENSMUST00000197205.5 ENSMUST00000200497.5 |
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| 3UTR-3UTR TCA 90 bp | CATCTTAAGGTGGTGTATGACTCCATCATTCTCCTTTATAGCACCCTGCATATATTCCCACACATAACTTaGTTCCTAAGTACAGAGGAA | + |
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Preference number: 2 (lower is better) Translates to: HLKVVYDSIILLYSTLHIFPHIT*FLSTEE Trigger: TTCCTCTGTACTTAGGAATCAAGTTATGTGTGGGAA...TATATGCAGGGTGCTATAAAGGAGAATGATGGAGTCATACACCACCTTAAGATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197205.5 |
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| 3UTR-3UTR GCA 90 bp | GTGAAGTGGCTGTATACTATTGGAGATAAGTATCAGAGATCAAATAGCCTGTTTTTGAACAATTTCCTCTaGACATGGTTCAGCAGGGCT | + |
|
Preference number: 2 (lower is better) Translates to: VKWLYTIGDKYQRSNSLFLNNFL*TWFSRA Trigger: AGCCCTGCTGAACCATGTGCAGAGGAAATTGTTCAA...AAACAGGCTATTTGATCTCTGATACTTATCTCCAATAGTATACAGCCACTTCAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000041826.14 ENSMUST00000197205.5 ENSMUST00000200497.5 |
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| 3UTR-3UTR TCA 90 bp | CTATGCCAGTTCATTCTTGAATTATTCATCTGGGTTTTTAGAAACAGTGCTCTGGACTCCTTGCTACTGTaGCAATTACATGTTACCAAG | + |
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Preference number: 2 (lower is better) Translates to: LCQFILELFIWVFRNSALDSLLL*QLHVTK Trigger: CTTGGTAACATGTAATTGTCACAGTAGCAAGGAGTC...CAGAGCACTGTTTCTAAAAACCCAGATGAATAATTCAAGAATGAACTGGCATAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000198214.5 |
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| 3UTR-3UTR GCA 90 bp | ATTGGAGATAAGTATCAGAGATCAAATAGCCTGTTTCAGGAACTTGATTACACTGGAAGTAAAGGGGTGTaGTCTGACACTTGGTTTTCT | + |
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Preference number: 2 (lower is better) Translates to: IGDKYQRSNSLFQELDYTGSKGV*SDTWFS Trigger: AGAAAACCAAGTGTCAGAGCACACCCCTTTACTTCC...AGTGTAATCAAGTTCCTGAAACAGGCTATTTGATCTCTGATACTTATCTCCAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197205.5 |
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| 3UTR-3UTR CCA 90 bp | AACCCAACCACACTAGGCAACTTTTATGAAAGTGAGAGTTGTTTTAGCTCATGCATTTTTAAAGTGTCCTaGCTACATTTTGTCATCCCC | + |
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Preference number: 2 (lower is better) Translates to: NPTTLGNFYESESCFSSCIFKVS*LHFVIP Trigger: GGGGATGACAAAATGTAGCCAGGACACTTTAAAAAT...GCATGAGCTAAAACAACTCTCACTTTCATAAAAGTTGCCTAGTGTGGTTGGGTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000041826.14 ENSMUST00000197205.5 ENSMUST00000200497.5 |
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| 3UTR-3UTR CCA 90 bp | TATGCGCAAATAAACATTATAAGGGAAGTCAACCAACCACCGGAAAGTCACACAAAGGATACTGAAATATaGAAAGTAAGGTCCAGAGAC | + |
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Preference number: 2 (lower is better) Translates to: YAQINIIREVNQPPESHTKDTEI*KVRSRD Trigger: GTCTCTGGACCTTACTTTCCATATTTCAGTATCCTT...TGTGTGACTTTCCGGTGGTTGGTTGACTTCCCTTATAATGTTTATTTGCGCATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197205.5 |
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| 3UTR-3UTR CCA 90 bp | TATGCGCAAATAAACATTATAAGGGAAGTCAACCAACCACCGGAAAGTCACACACACCAGAACAATACTTaGTGGCTTTTAAAGTGGAAA | + |
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Preference number: 2 (lower is better) Translates to: YAQINIIREVNQPPESHTHQNNT*WLLKWK Trigger: TTTCCACTTTAAAAGCCACCAAGTATTGTTCTGGTG...TGTGTGACTTTCCGGTGGTTGGTTGACTTCCCTTATAATGTTTATTTGCGCATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197205.5 |
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| 3UTR-3UTR TCA 90 bp | GTGAAGTGGCTGTATACTATTGGAGATAAGTATCAGAGATCAAATAGCCTGTTTACTAGACCTTTCCTATaGGGAAAAACTACTTGGGAA | + |
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Preference number: 2 (lower is better) Translates to: VKWLYTIGDKYQRSNSLFTRPFL*GKTTWE Trigger: TTCCCAAGTAGTTTTTCCTCATAGGAAAGGTCTAGT...AAACAGGCTATTTGATCTCTGATACTTATCTCCAATAGTATACAGCCACTTCAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000041826.14 ENSMUST00000197205.5 ENSMUST00000200497.5 |
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| 3UTR-3UTR CCA 90 bp | CATCTTAAGGTGGTGTATGACTCCATCATTCTCCTTTATAGCACCCTGCATATACAGAACAATACTTGGTaGCTTTTAAAGTGGAAAACA | + |
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Preference number: 2 (lower is better) Translates to: HLKVVYDSIILLYSTLHIQNNTW*LLKWKT Trigger: TGTTTTCCACTTTAAAAGCCACCAAGTATTGTTCTG...TATATGCAGGGTGCTATAAAGGAGAATGATGGAGTCATACACCACCTTAAGATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000041826.14 ENSMUST00000197205.5 ENSMUST00000200497.5 |
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| 3UTR CAA 90 bp | CCAGAGACATTCCCGTGGAATCAAACTCATAACACTATAGTGGTTTaGAAAACCTTAAAGTATTTGAAGTCTACACTAGACCTTTCCTAT | + |
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Preference number: 2 (lower is better) Translates to: PETFPWNQTHNTIVV*KTLKYLKSTLDLSY Trigger: ATAGGAAAGGTCTAGTGTAGACTTCAAATACTTTAAGGTTTTCAAAACCACTATAGTGTTATGAGTTTGATTCCACGGGAATGTCTCTGG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000041826.14 ENSMUST00000197205.5 ENSMUST00000200497.5 |
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| 3UTR-3UTR TCA 90 bp | AAGTATTTGAAGTCTACACTAGACCTTTCCTATGAGGAAAAACTACTTGGGAATGACATTTGCAGACTGTaGTCTAGGTCTTCATTTCAA | + |
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Preference number: 2 (lower is better) Translates to: KYLKSTLDLSYEEKLLGNDICRL*SRSSFQ Trigger: TTGAAATGAAGACCTAGATCACAGTCTGCAAATGTC...ATTCCCAAGTAGTTTTTCCTCATAGGAAAGGTCTAGTGTAGACTTCAAATACTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000041826.14 ENSMUST00000197205.5 ENSMUST00000200497.5 |
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| 3UTR-3UTR TCA 90 bp | ATTGGAGATAAGTATCAGAGATCAAATAGCCTGTTTCAGGAACTTGATTACACTACTAGACCTTTCCTATaGGGAAAAACTACTTGGGAA | + |
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Preference number: 2 (lower is better) Translates to: IGDKYQRSNSLFQELDYTTRPFL*GKTTWE Trigger: TTCCCAAGTAGTTTTTCCTCATAGGAAAGGTCTAGT...AGTGTAATCAAGTTCCTGAAACAGGCTATTTGATCTCTGATACTTATCTCCAAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000041826.14 ENSMUST00000197205.5 ENSMUST00000200497.5 |
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| 3UTR-3UTR CCA 90 bp | ATTGGAGATAAGTATCAGAGATCAAATAGCCTGTTTCAGGAACTTGATTACACTATTTTTAAAGTGTCCTaGCTACATTTTGTCATCCCC | + |
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Preference number: 2 (lower is better) Translates to: IGDKYQRSNSLFQELDYTIFKVS*LHFVIP Trigger: GGGGATGACAAAATGTAGCCAGGACACTTTAAAAAT...AGTGTAATCAAGTTCCTGAAACAGGCTATTTGATCTCTGATACTTATCTCCAAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000041826.14 ENSMUST00000197205.5 ENSMUST00000200497.5 |
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| 3UTR-3UTR CCA 90 bp | AAGTATTTGAAGTCTACACTAGACCTTTCCTATGAGGAAAAACTACTTGGGAATATTTTTAAAGTGTCCTaGCTACATTTTGTCATCCCC | + |
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Preference number: 2 (lower is better) Translates to: KYLKSTLDLSYEEKLLGNIFKVS*LHFVIP Trigger: GGGGATGACAAAATGTAGCCAGGACACTTTAAAAAT...ATTCCCAAGTAGTTTTTCCTCATAGGAAAGGTCTAGTGTAGACTTCAAATACTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000041826.14 ENSMUST00000197205.5 ENSMUST00000200497.5 |
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| 3UTR-3UTR CCA 90 bp | ATTGGAGATAAGTATCAGAGATCAAATAGCCTGTTTCAGGAACTTGATTACACTCACCAGAACAATACTTaGTGGCTTTTAAAGTGGAAA | + |
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Preference number: 2 (lower is better) Translates to: IGDKYQRSNSLFQELDYTHQNNT*WLLKWK Trigger: TTTCCACTTTAAAAGCCACCAAGTATTGTTCTGGTG...AGTGTAATCAAGTTCCTGAAACAGGCTATTTGATCTCTGATACTTATCTCCAAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000041826.14 ENSMUST00000197205.5 ENSMUST00000200497.5 |
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| 3UTR GCA 72 bp | CAGGCCCACGCTCTCAGCTGCCTGCTGCAGCCGCTATaGCAGGTCTTCCTAGCATGCTGCCCCCTCCCCCAC | + |
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Preference number: 3 (lower is better) Translates to: QAHALSCLLQPL*QVFLACCPLPH Trigger: GTGGGGGAGGGGGCAGCATGCTAGGAAGACCTGGCATAGCGGCTGCAGCAGGCAGCTGAGAGCGTGGGCCTG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000198214.5 |
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| 3UTR GCA 72 bp | CAGATGATTTGTCCTAAGCAGGCCCACGCTCTCAGCTaGCTGCTGCAGCCGCTATGCCAGGTCTTCCTAGCA | + |
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Preference number: 3 (lower is better) Translates to: QMICPKQAHALS*LLQPLCQVFLA Trigger: TGCTAGGAAGACCTGGCATAGCGGCTGCAGCAGGCAGCTGAGAGCGTGGGCCTGCTTAGGACAAATCATCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198214.5 |
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| 3UTR-3UTR CAA 90 bp | TTTGTCCTAAGCAGGCCCACGCTCTCAGCTGCCTGCTGCAGCCGCTATGCCAGGAACTGTAAGTTGCTTTaGTCATGGTATTGTCTCACA | + |
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Preference number: 3 (lower is better) Translates to: FVLSRPTLSAACCSRYARNCKLL*SWYCLT Trigger: TGTGAGACAATACCATGACAAAAGCAACTTACAGTT...CCTGGCATAGCGGCTGCAGCAGGCAGCTGAGAGCGTGGGCCTGCTTAGGACAAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198214.5 |
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| 3UTR-3UTR CAA 90 bp | ACTCAGGGAAGTTTAACGGGCAACACCATACTTCTGCCTCTCAAGGGAAATGGTCCCCAGAGAGCTAATTaGATGCCTGAGTTACAGCAC | + |
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Preference number: 3 (lower is better) Translates to: TQGSLTGNTILLPLKGNGPQRAN*MPELQH Trigger: GTGCTGTAACTCAGGCATCAAATTAGCTCTCTGGGG...ACCATTTCCCTTGAGAGGCAGAAGTATGGTGTTGCCCGTTAAACTTCCCTGAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197205.5 |
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| 3UTR TCA 72 bp | CTAGCTATGTGTAGCACTTCAGAGATGCAGCTTTTCTaGGTCGTCGTCACCCATGCTGGCATGCACTATATA | + |
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Preference number: 3 (lower is better) Translates to: LAMCSTSEMQLF*VVVTHAGMHYI Trigger: TATATAGTGCATGCCAGCATGGGTGACGACGACTCAGAAAAGCTGCATCTCTGAAGTGCTACACATAGCTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198214.5 |
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| 3UTR-3UTR CAA 90 bp | CTATGCCAGTTCATTCTTGAATTATTCATCTGGGTTTTTAGAAACAGTGCTCTGAGAGGCCATGCCTCCTaGATGAACACAGGCCCACCT | + |
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Preference number: 3 (lower is better) Translates to: LCQFILELFIWVFRNSALRGHAS*MNTGPP Trigger: AGGTGGGCCTGTGTTCATCAAGGAGGCATGGCCTCT...CAGAGCACTGTTTCTAAAAACCCAGATGAATAATTCAAGAATGAACTGGCATAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000198214.5 |
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| 3UTR-3UTR CAA 90 bp | ACTCAGGGAAGTTTAACGGGCAACACCATACTTCTGCCTCTCAAGGGAAATGGTCACCAATCTGTTACTTaGTTAGTGAAGTGGCTGTAT | + |
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Preference number: 3 (lower is better) Translates to: TQGSLTGNTILLPLKGNGHQSVT*LVKWLY Trigger: ATACAGCCACTTCACTAACAAAGTAACAGATTGGTG...ACCATTTCCCTTGAGAGGCAGAAGTATGGTGTTGCCCGTTAAACTTCCCTGAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197205.5 |
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| 3UTR TCA 72 bp | TGTGGGGGTAATCTTGATATAGCCATTTCCTCTATGTaGTATGACTCTGCGACTCCTTGCTACTGTGACAAT | + |
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Preference number: 3 (lower is better) Translates to: CGGNLDIAISSM*YDSATPCYCDN Trigger: ATTGTCACAGTAGCAAGGAGTCGCAGAGTCATATCACATAGAGGAAATGGCTATATCAAGATTACCCCCACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000198214.5 |
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| 3UTR TCA 72 bp | GGGTTTTTAGAAACAGTGCTCTGTAGCTGTTTCCTCTaGACTATAAAATTCATGCGGGAGGACTGCGATTCA | + |
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Preference number: 3 (lower is better) Translates to: GFLETVLCSCFL*TIKFMREDCDS Trigger: TGAATCGCAGTCCTCCCGCATGAATTTTATAGTTCAGAGGAAACAGCTACAGAGCACTGTTTCTAAAAACCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000198214.5 |
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| 3UTR TCA 72 bp | TTTCACCAAACTATTCTAAAAATACTTTTTCACAGATaGTTTGTCCTAAGCAGGCCCACGCTCTCAGCTGCC | + |
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Preference number: 3 (lower is better) Translates to: FHQTILKILFHR*FVLSRPTLSAA Trigger: GGCAGCTGAGAGCGTGGGCCTGCTTAGGACAAATCATCTGTGAAAAAGTATTTTTAGAATAGTTTGGTGAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000198214.5 |
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| 3UTR-3UTR CAA 90 bp | AAGTATTTGAAGTCTACACTAGACCTTTCCTATGAGGAAAAACTACTTGGGAATCCCCAGAGAGCTAATTaGATGCCTGAGTTACAGCAC | + |
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Preference number: 3 (lower is better) Translates to: KYLKSTLDLSYEEKLLGNPQRAN*MPELQH Trigger: GTGCTGTAACTCAGGCATCAAATTAGCTCTCTGGGG...ATTCCCAAGTAGTTTTTCCTCATAGGAAAGGTCTAGTGTAGACTTCAAATACTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000041826.14 ENSMUST00000197205.5 ENSMUST00000200497.5 |
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| 3UTR-3UTR CAA 90 bp | TATGCGCAAATAAACATTATAAGGGAAGTCAACCAACCACCGGAAAGTCACACACTTCCCACACATAACTaGATTCCTAAGTACAGAGGA | + |
|
Preference number: 3 (lower is better) Translates to: YAQINIIREVNQPPESHTLPTHN*IPKYRG Trigger: TCCTCTGTACTTAGGAATCAAGTTATGTGTGGGAAG...TGTGTGACTTTCCGGTGGTTGGTTGACTTCCCTTATAATGTTTATTTGCGCATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197205.5 |
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| 3UTR-3UTR CAA 90 bp | AAGTATTTGAAGTCTACACTAGACCTTTCCTATGAGGAAAAACTACTTGGGAATCACCAATCTGTTACTTaGTTAGTGAAGTGGCTGTAT | + |
|
Preference number: 3 (lower is better) Translates to: KYLKSTLDLSYEEKLLGNHQSVT*LVKWLY Trigger: ATACAGCCACTTCACTAACAAAGTAACAGATTGGTG...ATTCCCAAGTAGTTTTTCCTCATAGGAAAGGTCTAGTGTAGACTTCAAATACTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000041826.14 ENSMUST00000197205.5 ENSMUST00000200497.5 |
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| 3UTR-3UTR CAA 90 bp | ATTGGAGATAAGTATCAGAGATCAAATAGCCTGTTTCAGGAACTTGATTACACTCACCAATCTGTTACTTaGTTAGTGAAGTGGCTGTAT | + |
|
Preference number: 3 (lower is better) Translates to: IGDKYQRSNSLFQELDYTHQSVT*LVKWLY Trigger: ATACAGCCACTTCACTAACAAAGTAACAGATTGGTG...AGTGTAATCAAGTTCCTGAAACAGGCTATTTGATCTCTGATACTTATCTCCAAT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000041826.14 ENSMUST00000197205.5 ENSMUST00000200497.5 |
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| 3UTR-3UTR CAA 90 bp | GTGAAGTGGCTGTATACTATTGGAGATAAGTATCAGAGATCAAATAGCCTGTTTATGAGGAAAAACTACTaGGGAATAGAAAGGAAGAAG | + |
|
Preference number: 3 (lower is better) Translates to: VKWLYTIGDKYQRSNSLFMRKNY*GIERKK Trigger: CTTCTTCCTTTCTATTCCCAAGTAGTTTTTCCTCAT...AAACAGGCTATTTGATCTCTGATACTTATCTCCAATAGTATACAGCCACTTCAC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000041826.14 ENSMUST00000197205.5 ENSMUST00000200497.5 |
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| 3UTR-3UTR CAA 90 bp | ATTGGAGATAAGTATCAGAGATCAAATAGCCTGTTTCAGGAACTTGATTACACTTTTGGTGGGAAGAATTaGATGGGGACAGCTTATTTA | + |
|
Preference number: 3 (lower is better) Translates to: IGDKYQRSNSLFQELDYTFGGKN*MGTAYL Trigger: TAAATAAGCTGTCCCCATCAAATTCTTCCCACCAAA...AGTGTAATCAAGTTCCTGAAACAGGCTATTTGATCTCTGATACTTATCTCCAAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197205.5 |
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| CDS-3UTR CCA 90 bp | CTGCTGCAGCCGCTATGCCAGGTCTTCCTAGCATGCTGCCCCCTCCCCCACAGAGCTGCACAGTCAAGATaGTGTAGACCTGTGTGGCGG | + |
|
Preference number: 4 (lower is better) Translates to: LLQPLCQVFLACCPLPHRAAQSR*CRPVWR Trigger: CCGCCACACAGGTCTACACCATCTTGACTGTGCAGC...TCTGTGGGGGAGGGGGCAGCATGCTAGGAAGACCTGGCATAGCGGCTGCAGCAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000198214.5 |
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| CDS-3UTR CCA 90 bp | CTGCTGCAGCCGCTATGCCAGGTCTTCCTAGCATGCTGCCCCCTCCCCCACAGAATTGTCTTTCAGTGGTaGAGGCACTATGGGTTCACA | + |
|
Preference number: 4 (lower is better) Translates to: LLQPLCQVFLACCPLPHRIVFQW*RHYGFT Trigger: TGTGAACCCATAGTGCCTCCACCACTGAAAGACAAT...TCTGTGGGGGAGGGGGCAGCATGCTAGGAAGACCTGGCATAGCGGCTGCAGCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000198214.5 |
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| 3UTR CAA 72 bp | GGCCATCTTCTGTGTAGTATGAGAGGCCATGCCTCCTaGATGAACACAGGCCCACCTCCATCCCCAGACAGC | + |
|
Preference number: 4 (lower is better) Translates to: GHLLCSMRGHAS*MNTGPPPSPDS Trigger: GCTGTCTGGGGATGGAGGTGGGCCTGTGTTCATCAAGGAGGCATGGCCTCTCATACTACACAGAAGATGGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198214.5 |
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| 3UTR CAA 72 bp | ACCATACTTCTGCCTCTCAAGGGAAATGGTGGCAGATaGCCCGGCATAAGACAAGGAGCTAGGGAGTTCATG | + |
|
Preference number: 4 (lower is better) Translates to: TILLPLKGNGGR*PGIRQGAREFM Trigger: CATGAACTCCCTAGCTCCTTGTCTTATGCCGGGCAATCTGCCACCATTTCCCTTGAGAGGCAGAAGTATGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197205.5 |
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| CDS-3UTR CCA 90 bp | CATCTTAAGGTGGTGTATGACTCCATCATTCTCCTTTATAGCACCCTGCATATAGAGTCCGAGTCACCATaGGAGCAGGGGAGGATCCTT | + |
|
Preference number: 4 (lower is better) Translates to: HLKVVYDSIILLYSTLHIESESP*EQGRIL Trigger: AAGGATCCTCCCCTGCTCCCATGGTGACTCGGACTC...TATATGCAGGGTGCTATAAAGGAGAATGATGGAGTCATACACCACCTTAAGATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200497.5 |
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| CDS-3UTR CCA 90 bp | CATCTTAAGGTGGTGTATGACTCCATCATTCTCCTTTATAGCACCCTGCATATAGCTGCACAGTCAAGATaGTGTAGACCTGTGTGGCGG | + |
|
Preference number: 4 (lower is better) Translates to: HLKVVYDSIILLYSTLHIAAQSR*CRPVWR Trigger: CCGCCACACAGGTCTACACCATCTTGACTGTGCAGC...TATATGCAGGGTGCTATAAAGGAGAATGATGGAGTCATACACCACCTTAAGATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000041826.14 ENSMUST00000197205.5 ENSMUST00000200497.5 |
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| CDS-3UTR GCA 90 bp | AACCCAACCACACTAGGCAACTTTTATGAAAGTGAGAGTTGTTTTAGCTCATGCGTATCTGTTCCCATCTaGTGCAGGAGGAAGCTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: NPTTLGNFYESESCFSSCVSVPI*CRRKLL Trigger: GAGGAGCTTCCTCCTGCAGCAGATGGGAACAGATAC...GCATGAGCTAAAACAACTCTCACTTTCATAAAAGTTGCCTAGTGTGGTTGGGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197205.5 |
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| CDS-3UTR CCA 90 bp | AACCCAACCACACTAGGCAACTTTTATGAAAGTGAGAGTTGTTTTAGCTCATGCCAAATGACTGGGTCCTaGCAGAAGCTGAGGGTGGAA | + |
|
Preference number: 4 (lower is better) Translates to: NPTTLGNFYESESCFSSCQMTGS*QKLRVE Trigger: TTCCACCCTCAGCTTCTGCCAGGACCCAGTCATTTG...GCATGAGCTAAAACAACTCTCACTTTCATAAAAGTTGCCTAGTGTGGTTGGGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041826.14 ENSMUST00000200497.5 |
||
| CDS-3UTR TCA 90 bp | CATCTTAAGGTGGTGTATGACTCCATCATTCTCCTTTATAGCACCCTGCATATAGTCGTCCTCGTAGTCTaGAGACTCTGTCATGTTGTG | + |
|
Preference number: 4 (lower is better) Translates to: HLKVVYDSIILLYSTLHIVVLVV*RLCHVV Trigger: CACAACATGACAGAGTCTTCAGACTACGAGGACGAC...TATATGCAGGGTGCTATAAAGGAGAATGATGGAGTCATACACCACCTTAAGATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041826.14 ENSMUST00000200497.5 |
||
| CDS-3UTR GCA 90 bp | CATCTTAAGGTGGTGTATGACTCCATCATTCTCCTTTATAGCACCCTGCATATAGGTAATTTCGTTGTCTaGGTCACTGCTGTCGGTCTC | + |
|
Preference number: 4 (lower is better) Translates to: HLKVVYDSIILLYSTLHIGNFVV*VTAVGL Trigger: GAGACCGACAGCAGTGACGCAGACAACGAAATTACC...TATATGCAGGGTGCTATAAAGGAGAATGATGGAGTCATACACCACCTTAAGATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041826.14 ENSMUST00000200497.5 |
||
| CDS-3UTR CCA 90 bp | AAGTATTTGAAGTCTACACTAGACCTTTCCTATGAGGAAAAACTACTTGGGAATGCTGCACAGTCAAGATaGTGTAGACCTGTGTGGCGG | + |
|
Preference number: 4 (lower is better) Translates to: KYLKSTLDLSYEEKLLGNAAQSR*CRPVWR Trigger: CCGCCACACAGGTCTACACCATCTTGACTGTGCAGC...ATTCCCAAGTAGTTTTTCCTCATAGGAAAGGTCTAGTGTAGACTTCAAATACTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000041826.14 ENSMUST00000197205.5 ENSMUST00000200497.5 |
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| CDS-3UTR CCA 90 bp | TGCATTGCTCTTTCTTCTCCCTTTATACAGAACTCAGAATGGAATTATATACAGGCTGCACAGTCAAGATaGTGTAGACCTGTGTGGCGG | + |
|
Preference number: 4 (lower is better) Translates to: CIALSSPFIQNSEWNYIQAAQSR*CRPVWR Trigger: CCGCCACACAGGTCTACACCATCTTGACTGTGCAGC...CTGTATATAATTCCATTCTGAGTTCTGTATAAAGGGAGAAGAAAGAGCAATGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199041.2 |
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| CDS-3UTR CCA 90 bp | AACCCAACCACACTAGGCAACTTTTATGAAAGTGAGAGTTGTTTTAGCTCATGCGAGTCCGAGTCACCTTaGGAAGGAACAACCTTTTGT | + |
|
Preference number: 4 (lower is better) Translates to: NPTTLGNFYESESCFSSCESESP*EGTTFC Trigger: ACAAAAGGTTGTTCCTTCCCAAGGTGACTCGGACTC...GCATGAGCTAAAACAACTCTCACTTTCATAAAAGTTGCCTAGTGTGGTTGGGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000041826.14 |
||
| CDS-3UTR CCA 90 bp | GTGAAGTGGCTGTATACTATTGGAGATAAGTATCAGAGATCAAATAGCCTGTTTCAAATGACTGGGTCCTaGCAGAAGCTGAGGGTGGAA | + |
|
Preference number: 4 (lower is better) Translates to: VKWLYTIGDKYQRSNSLFQMTGS*QKLRVE Trigger: TTCCACCCTCAGCTTCTGCCAGGACCCAGTCATTTG...AAACAGGCTATTTGATCTCTGATACTTATCTCCAATAGTATACAGCCACTTCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041826.14 ENSMUST00000200497.5 |
||
| CDS-3UTR CCA 90 bp | GTGAAGTGGCTGTATACTATTGGAGATAAGTATCAGAGATCAAATAGCCTGTTTAGAGACCCAAATGACTaGGTCCTGGCAGAAGCTGAG | + |
|
Preference number: 4 (lower is better) Translates to: VKWLYTIGDKYQRSNSLFRDPND*VLAEAE Trigger: CTCAGCTTCTGCCAGGACCCAGTCATTTGGGTCTCT...AAACAGGCTATTTGATCTCTGATACTTATCTCCAATAGTATACAGCCACTTCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041826.14 ENSMUST00000200497.5 |
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| CDS-3UTR CCA 90 bp | ATTGGAGATAAGTATCAGAGATCAAATAGCCTGTTTCAGGAACTTGATTACACTAGAGACCCAAATGACTaGGTCCTGGCAGAAGCTGAG | + |
|
Preference number: 4 (lower is better) Translates to: IGDKYQRSNSLFQELDYTRDPND*VLAEAE Trigger: CTCAGCTTCTGCCAGGACCCAGTCATTTGGGTCTCT...AGTGTAATCAAGTTCCTGAAACAGGCTATTTGATCTCTGATACTTATCTCCAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041826.14 ENSMUST00000200497.5 |
||
| CDS-3UTR GCA 90 bp | GTGAAGTGGCTGTATACTATTGGAGATAAGTATCAGAGATCAAATAGCCTGTTTGGAAGTAAAGGGGTGTaGTCTGACACTTGGTTTTCT | + |
|
Preference number: 4 (lower is better) Translates to: VKWLYTIGDKYQRSNSLFGSKGV*SDTWFS Trigger: AGAAAACCAAGTGTCAGAGCACACCCCTTTACTTCC...AAACAGGCTATTTGATCTCTGATACTTATCTCCAATAGTATACAGCCACTTCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041826.14 ENSMUST00000200497.5 |
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| CDS-3UTR CCA 90 bp | CATCTTAAGGTGGTGTATGACTCCATCATTCTCCTTTATAGCACCCTGCATATAATAACCAAATCTTGCTaGAAGGTCCTCAAATGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: HLKVVYDSIILLYSTLHIITKSC*KVLKCL Trigger: CAGACATTTGAGGACCTTCCAGCAAGATTTGGTTAT...TATATGCAGGGTGCTATAAAGGAGAATGATGGAGTCATACACCACCTTAAGATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000041826.14 ENSMUST00000197205.5 ENSMUST00000200497.5 |
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| CDS-3UTR CCA 90 bp | GTGAAGTGGCTGTATACTATTGGAGATAAGTATCAGAGATCAAATAGCCTGTTTATTGTCTTTCAGTGGTaGAGGCACTATGGGTTCACA | + |
|
Preference number: 4 (lower is better) Translates to: VKWLYTIGDKYQRSNSLFIVFQW*RHYGFT Trigger: TGTGAACCCATAGTGCCTCCACCACTGAAAGACAAT...AAACAGGCTATTTGATCTCTGATACTTATCTCCAATAGTATACAGCCACTTCAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000041826.14 ENSMUST00000197205.5 ENSMUST00000200497.5 |
||
| CDS-3UTR CCA 90 bp | AACCCAACCACACTAGGCAACTTTTATGAAAGTGAGAGTTGTTTTAGCTCATGCGGAACTAAGATAATGTaGCCCCCTTTTTCATATGTG | + |
|
Preference number: 4 (lower is better) Translates to: NPTTLGNFYESESCFSSCGTKIM*PPFSYV Trigger: CACATATGAAAAAGGGGGCCACATTATCTTAGTTCC...GCATGAGCTAAAACAACTCTCACTTTCATAAAAGTTGCCTAGTGTGGTTGGGTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000041826.14 ENSMUST00000200497.5 |
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| CDS-3UTR GCA 90 bp | ATTGGAGATAAGTATCAGAGATCAAATAGCCTGTTTCAGGAACTTGATTACACTAGGGATCTACACACTTaGAATGATAAGCATGGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: IGDKYQRSNSLFQELDYTRDLHT*NDKHGS Trigger: GCTCCCATGCTTATCATTGCAAGTGTGTAGATCCCT...AGTGTAATCAAGTTCCTGAAACAGGCTATTTGATCTCTGATACTTATCTCCAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041826.14 |
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| CDS-3UTR CCA 90 bp | ATTGGAGATAAGTATCAGAGATCAAATAGCCTGTTTCAGGAACTTGATTACACTATTGTCTTTCAGTGGTaGAGGCACTATGGGTTCACA | + |
|
Preference number: 4 (lower is better) Translates to: IGDKYQRSNSLFQELDYTIVFQW*RHYGFT Trigger: TGTGAACCCATAGTGCCTCCACCACTGAAAGACAAT...AGTGTAATCAAGTTCCTGAAACAGGCTATTTGATCTCTGATACTTATCTCCAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000041826.14 ENSMUST00000197205.5 ENSMUST00000200497.5 |
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| CDS-3UTR CCA 90 bp | TGCATTGCTCTTTCTTCTCCCTTTATACAGAACTCAGAATGGAATTATATACAGATTGTCTTTCAGTGGTaGAGGCACTATGGGTTCACA | + |
|
Preference number: 4 (lower is better) Translates to: CIALSSPFIQNSEWNYIQIVFQW*RHYGFT Trigger: TGTGAACCCATAGTGCCTCCACCACTGAAAGACAAT...CTGTATATAATTCCATTCTGAGTTCTGTATAAAGGGAGAAGAAAGAGCAATGCA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199041.2 |
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| CDS-3UTR CCA 90 bp | GTGAAGTGGCTGTATACTATTGGAGATAAGTATCAGAGATCAAATAGCCTGTTTGGAACTAAGATAATGTaGCCCCCTTTTTCATATGTG | + |
|
Preference number: 4 (lower is better) Translates to: VKWLYTIGDKYQRSNSLFGTKIM*PPFSYV Trigger: CACATATGAAAAAGGGGGCCACATTATCTTAGTTCC...AAACAGGCTATTTGATCTCTGATACTTATCTCCAATAGTATACAGCCACTTCAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000041826.14 ENSMUST00000200497.5 |
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| CDS-3UTR GCA 90 bp | AAGTATTTGAAGTCTACACTAGACCTTTCCTATGAGGAAAAACTACTTGGGAATGAACAACCTTTTGTTTaGAGACTGGACAGGTCTTTT | + |
|
Preference number: 4 (lower is better) Translates to: KYLKSTLDLSYEEKLLGNEQPFV*RLDRSF Trigger: AAAAGACCTGTCCAGTCTGCAAACAAAAGGTTGTTC...ATTCCCAAGTAGTTTTTCCTCATAGGAAAGGTCTAGTGTAGACTTCAAATACTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041826.14 |
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| CDS-3UTR CCA 90 bp | TATTTGATCTGTCATCCATGCATAAATGTTTATTCATGTCTTCCCAGGAAAAGCGGAACTAAGATAATGTaGCCCCCTTTTTCATATGTG | + |
|
Preference number: 4 (lower is better) Translates to: YLICHPCINVYSCLPRKSGTKIM*PPFSYV Trigger: CACATATGAAAAAGGGGGCCACATTATCTTAGTTCC...GCTTTTCCTGGGAAGACATGAATAAACATTTATGCATGGATGACAGATCAAATA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000198214.5 |
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| CDS-3UTR CCA 90 bp | TGCATTGCTCTTTCTTCTCCCTTTATACAGAACTCAGAATGGAATTATATACAGGGAACTAAGATAATGTaGCCCCCTTTTTCATATGTG | + |
|
Preference number: 4 (lower is better) Translates to: CIALSSPFIQNSEWNYIQGTKIM*PPFSYV Trigger: CACATATGAAAAAGGGGGCCACATTATCTTAGTTCC...CTGTATATAATTCCATTCTGAGTTCTGTATAAAGGGAGAAGAAAGAGCAATGCA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000199041.2 |
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| 3UTR CAA 72 bp | TTCCCGTGGAATCAAACTCATAACACTATAGTGGTTTaGAAAACCTTAAAGTATTTGAAGTCTACACTAGAC | + |
|
Preference number: 4 (lower is better) Translates to: FPWNQTHNTIVV*KTLKYLKSTLD Trigger: GTCTAGTGTAGACTTCAAATACTTTAAGGTTTTCAAAACCACTATAGTGTTATGAGTTTGATTCCACGGGAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000041826.14 ENSMUST00000197205.5 ENSMUST00000200497.5 |
||
| CDS-3UTR CAA 90 bp | CATCTTAAGGTGGTGTATGACTCCATCATTCTCCTTTATAGCACCCTGCATATAAGTGTATCAATGTCGTaGGATCCCATGCTAATCAGG | + |
|
Preference number: 5 (lower is better) Translates to: HLKVVYDSIILLYSTLHISVSMS*DPMLIR Trigger: CCTGATTAGCATGGGATCCAACGACATTGATACACT...TATATGCAGGGTGCTATAAAGGAGAATGATGGAGTCATACACCACCTTAAGATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041826.14 ENSMUST00000200497.5 |
||
| CDS-3UTR CAA 90 bp | GTGAAGTGGCTGTATACTATTGGAGATAAGTATCAGAGATCAAATAGCCTGTTTAGAGTCCGAGTCACCTaGGGAAGGAACAACCTTTTG | + |
|
Preference number: 5 (lower is better) Translates to: VKWLYTIGDKYQRSNSLFRVRVT*GRNNLL Trigger: CAAAAGGTTGTTCCTTCCCAAGGTGACTCGGACTCT...AAACAGGCTATTTGATCTCTGATACTTATCTCCAATAGTATACAGCCACTTCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041826.14 |
||
| CDS-3UTR CAA 90 bp | GTGAAGTGGCTGTATACTATTGGAGATAAGTATCAGAGATCAAATAGCCTGTTTGGAACAACCTTTTGTTaGCAGACTGGACAGGTCTTT | + |
|
Preference number: 5 (lower is better) Translates to: VKWLYTIGDKYQRSNSLFGTTFC*QTGQVF Trigger: AAAGACCTGTCCAGTCTGCAAACAAAAGGTTGTTCC...AAACAGGCTATTTGATCTCTGATACTTATCTCCAATAGTATACAGCCACTTCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041826.14 |
||
| CDS-3UTR CAA 90 bp | ATTGGAGATAAGTATCAGAGATCAAATAGCCTGTTTCAGGAACTTGATTACACTGGAAGGAACAACCTTTaGTTTGCAGACTGGACAGGT | + |
|
Preference number: 5 (lower is better) Translates to: IGDKYQRSNSLFQELDYTGRNNL*FADWTG Trigger: ACCTGTCCAGTCTGCAAACAAAAGGTTGTTCCTTCC...AGTGTAATCAAGTTCCTGAAACAGGCTATTTGATCTCTGATACTTATCTCCAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041826.14 |
||
| CDS-3UTR CAA 90 bp | ATTGGAGATAAGTATCAGAGATCAAATAGCCTGTTTCAGGAACTTGATTACACTAGTGTATCAATGTCGTaGGATCCCATGCTAATCAGG | + |
|
Preference number: 5 (lower is better) Translates to: IGDKYQRSNSLFQELDYTSVSMS*DPMLIR Trigger: CCTGATTAGCATGGGATCCAACGACATTGATACACT...AGTGTAATCAAGTTCCTGAAACAGGCTATTTGATCTCTGATACTTATCTCCAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041826.14 ENSMUST00000200497.5 |
||
| CDS-3UTR CAA 90 bp | TATTTGATCTGTCATCCATGCATAAATGTTTATTCATGTCTTCCCAGGAAAAGCAGTGTATCAATGTCGTaGGATCCCATGCTAATCAGG | + |
|
Preference number: 5 (lower is better) Translates to: YLICHPCINVYSCLPRKSSVSMS*DPMLIR Trigger: CCTGATTAGCATGGGATCCAACGACATTGATACACT...GCTTTTCCTGGGAAGACATGAATAAACATTTATGCATGGATGACAGATCAAATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198214.5 |
||
| CDS-3UTR CAA 90 bp | TGCATTGCTCTTTCTTCTCCCTTTATACAGAACTCAGAATGGAATTATATACAGAGTGTATCAATGTCGTaGGATCCCATGCTAATCAGG | + |
|
Preference number: 5 (lower is better) Translates to: CIALSSPFIQNSEWNYIQSVSMS*DPMLIR Trigger: CCTGATTAGCATGGGATCCAACGACATTGATACACT...CTGTATATAATTCCATTCTGAGTTCTGTATAAAGGGAGAAGAAAGAGCAATGCA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199041.2 |
||
| CDS-3UTR CAA 90 bp | TATTTGATCTGTCATCCATGCATAAATGTTTATTCATGTCTTCCCAGGAAAAGCTGCAGTTTATCACAGTaGATGCATGGGTTGCCTTTT | + |
|
Preference number: 5 (lower is better) Translates to: YLICHPCINVYSCLPRKSCSLSQ*MHGLPF Trigger: AAAAGGCAACCCATGCATCAACTGTGATAAACTGCA...GCTTTTCCTGGGAAGACATGAATAAACATTTATGCATGGATGACAGATCAAATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198214.5 |
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