Pregenerated sensors for RNF125 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000033107Ensembl transcript IDs: ENSMUST00000050004.3, ENSMUST00000234316.2
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTCCTCCATGCCTGGCTAAGAATACACTTCAAACGCAGAAGTTGTTaGAGTATTATATTATGTACTATAATTTGGCTAAATTGGATTTTG | + |
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Preference number: 1 (lower is better) Translates to: LLHAWLRIHFKRRSC*SIILCTIIWLNWIL Trigger: CAAAATCCAATTTAGCCAAATTATAGTACATAATATAATACTGCAACAACTTCTGCGTTTGAAGTGTATTCTTAGCCAGGCATGGAGGAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050004.3 |
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| 3UTR-3UTR TCA 90 bp | ACACACATCACTAATGGACACAGGAAGCTGCTCCATCACATAGCCAGCCTGTGTAGATCTAAGCCAGAATaGACACGGTTTTTGAATGCA | + |
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Preference number: 2 (lower is better) Translates to: THITNGHRKLLHHIASLCRSKPE*TRFLNA Trigger: TGCATTCAAAAACCGTGTTCATTCTGGCTTAGATCT...ACACAGGCTGGCTATGTGATGGAGCAGCTTCCTGTGTCCATTAGTGATGTGTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050004.3 ENSMUST00000234316.2 |
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| 3UTR CAA 90 bp | GTCCATATTTTGTTCCTTTCTCCGTCTTTTAGCATGGAACAGAGATaGGCTTTCTCGCCTAACCATGATGACAGTTGGGAATATGTAGCG | + |
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Preference number: 2 (lower is better) Translates to: VHILFLSPSFSMEQR*AFSPNHDDSWEYVA Trigger: CGCTACATATTCCCAACTGTCATCATGGTTAGGCGAGAAAGCCAATCTCTGTTCCATGCTAAAAGACGGAGAAAGGAACAAAATATGGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050004.3 ENSMUST00000234316.2 |
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| 3UTR-3UTR TCA 90 bp | ATGTCCATATTTTGTTCCTTTCTCCGTCTTTTAGCATGGAACAGAGATTGGCTTCTTAAATGGTACGAGTaGATGGTCCCCTTCCTAGTC | + |
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Preference number: 2 (lower is better) Translates to: MSIFCSFLRLLAWNRDWLLKWYE*MVPFLV Trigger: GACTAGGAAGGGGACCATTCACTCGTACCATTTAAG...AAGCCAATCTCTGTTCCATGCTAAAAGACGGAGAAAGGAACAAAATATGGACAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000050004.3 ENSMUST00000234316.2 |
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| 3UTR-3UTR CCA 90 bp | TGCCTGGCTAAGAATACACTTCAAACGCAGAAGTTGTTGCAGTATTATATTATGGCATGGAACAGAGATTaGCTTTCTCGCCTAACCATG | + |
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Preference number: 2 (lower is better) Translates to: CLAKNTLQTQKLLQYYIMAWNRD*LSRLTM Trigger: CATGGTTAGGCGAGAAAGCCAATCTCTGTTCCATGC...CATAATATAATACTGCAACAACTTCTGCGTTTGAAGTGTATTCTTAGCCAGGCA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050004.3 |
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| 3UTR-3UTR TCA 90 bp | GCTAAATTGGATTTTGGTGACTTCAAATTCTTCCCTTTCCTCCTTTTCATAAGACTTAAATGGTACGAGTaGATGGTCCCCTTCCTAGTC | + |
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Preference number: 2 (lower is better) Translates to: AKLDFGDFKFFPFLLFIRLKWYE*MVPFLV Trigger: GACTAGGAAGGGGACCATTCACTCGTACCATTTAAG...TCTTATGAAAAGGAGGAAAGGGAAGAATTTGAAGTCACCAAAATCCAATTTAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000050004.3 ENSMUST00000234316.2 |
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| 3UTR-3UTR CCA 90 bp | GCTAAATTGGATTTTGGTGACTTCAAATTCTTCCCTTTCCTCCTTTTCATAAGAGCATGGAACAGAGATTaGCTTTCTCGCCTAACCATG | + |
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Preference number: 2 (lower is better) Translates to: AKLDFGDFKFFPFLLFIRAWNRD*LSRLTM Trigger: CATGGTTAGGCGAGAAAGCCAATCTCTGTTCCATGC...TCTTATGAAAAGGAGGAAAGGGAAGAATTTGAAGTCACCAAAATCCAATTTAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050004.3 ENSMUST00000234316.2 |
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| 3UTR-3UTR GCA 90 bp | CCTTTAATGTCCATATTTTGTTCCTTTCTCCGTCTTTTAGCATGGAACAGAGATAACACGGTTTTTGAATaGAACATAACAAAGACAAGC | + |
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Preference number: 2 (lower is better) Translates to: PLMSIFCSFLRLLAWNRDNTVFE*NITKTS Trigger: GCTTGTCTTTGTTATGTTGCATTCAAAAACCGTGTT...ATCTCTGTTCCATGCTAAAAGACGGAGAAAGGAACAAAATATGGACATTAAAGG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000050004.3 ENSMUST00000234316.2 |
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| 3UTR-3UTR GCA 90 bp | ATTTGGCTAAATTGGATTTTGGTGACTTCAAATTCTTCCCTTTCCTCCTTTTCAAACACGGTTTTTGAATaGAACATAACAAAGACAAGC | + |
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Preference number: 2 (lower is better) Translates to: IWLNWILVTSNSSLSSFSNTVFE*NITKTS Trigger: GCTTGTCTTTGTTATGTTGCATTCAAAAACCGTGTT...TGAAAAGGAGGAAAGGGAAGAATTTGAAGTCACCAAAATCCAATTTAGCCAAAT 34% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000050004.3 ENSMUST00000234316.2 |
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| 3UTR GCA 72 bp | TATACTCACCTCCTGAATTACAGGCATGCTCCTCCATaGCTGGCTAAGAATACACTTCAAACGCAGAAGTTG | + |
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Preference number: 3 (lower is better) Translates to: YTHLLNYRHAPP*LAKNTLQTQKL Trigger: CAACTTCTGCGTTTGAAGTGTATTCTTAGCCAGGCATGGAGGAGCATGCCTGTAATTCAGGAGGTGAGTATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050004.3 |
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| 3UTR TCA 72 bp | GTAAGGGCAGATCTAAGCCAGAATGAACACGGTTTTTaGATGCAACATAACAAAGACAAGCAGGTAATACTG | + |
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Preference number: 3 (lower is better) Translates to: VRADLSQNEHGF*MQHNKDKQVIL Trigger: CAGTATTACCTGCTTGTCTTTGTTATGTTGCATTCAAAAACCGTGTTCATTCTGGCTTAGATCTGCCCTTAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050004.3 ENSMUST00000234316.2 |
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| CDS-3UTR CCA 90 bp | TCCATCAAACGTCGACAATCCCCCTCCAGTCCTTCAAGCAGCATCTTAAATGGTGATCGGCAGAACACGTaGCCACAGCGGGTCCGGACC | + |
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Preference number: 4 (lower is better) Translates to: SIKRRQSPSSPSSSILNGDRQNT*PQRVRT Trigger: GGTCCGGACCCGCTGTGGCCACGTGTTCTGCCGATC...ACCATTTAAGATGCTGCTTGAAGGACTGGAGGGGGATTGTCGACGTTTGATGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000234316.2 |
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| CDS-3UTR GCA 90 bp | ATGTCTAATAGACTCAAGAATGTAAGGGCAGATCTAAGCCAGAATGAACACGGTGCTCCGAGTCCCCGCTaGGCTCCAGAGTCCGCGGGG | + |
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Preference number: 4 (lower is better) Translates to: MSNRLKNVRADLSQNEHGAPSPR*APESAG Trigger: CCCCGCGGACTCTGGAGCGCAGCGGGGACTCGGAGC...ACCGTGTTCATTCTGGCTTAGATCTGCCCTTACATTCTTGAGTCTATTAGACAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000234316.2 |
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| CDS-3UTR TCA 90 bp | CGTCTTTTAGCATGGAACAGAGATTGGCTTTCTCGCCTAACCATGATGACAGTTAGCAGTCGAAGGAGGTaGTGGGCAGCTCCGAGTCCC | + |
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Preference number: 4 (lower is better) Translates to: RLLAWNRDWLSRLTMMTVSSRRR*WAAPSP Trigger: GGGACTCGGAGCTGCCCATCACCTCCTTCGACTGCT...AACTGTCATCATGGTTAGGCGAGAAAGCCAATCTCTGTTCCATGCTAAAAGACG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000234316.2 |
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| CDS-3UTR TCA 90 bp | CATGTTTCTCCATCAAACGTCGACAATCCCCCTCCAGTCCTTCAAGCAGCATCTGCTTTCATCAGGTCGTaGATGGCAAAGTGGACAGAA | + |
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Preference number: 4 (lower is better) Translates to: HVSPSNVDNPPPVLQAASAFIRS*MAKWTE Trigger: TTCTGTCCACTTTGCCATTCACGACCTGATGAAAGC...AGATGCTGCTTGAAGGACTGGAGGGGGATTGTCGACGTTTGATGGAGAAACATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050004.3 ENSMUST00000234316.2 |
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| CDS-3UTR TCA 90 bp | CGTCTTTTAGCATGGAACAGAGATTGGCTTTCTCGCCTAACCATGATGACAGTTCACCTCCAGACACACTaGGCAGTCGAAGGAGGTGAT | + |
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Preference number: 4 (lower is better) Translates to: RLLAWNRDWLSRLTMMTVHLQTH*AVEGGD Trigger: ATCACCTCCTTCGACTGCTCAGTGTGTCTGGAGGTG...AACTGTCATCATGGTTAGGCGAGAAAGCCAATCTCTGTTCCATGCTAAAAGACG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000234316.2 |
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| CDS-3UTR CCA 90 bp | CATGTTTCTCCATCAAACGTCGACAATCCCCCTCCAGTCCTTCAAGCAGCATCTTCATCAGGTCGTGAATaGCAAAGTGGACAGAACACG | + |
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Preference number: 4 (lower is better) Translates to: HVSPSNVDNPPPVLQAASSSGRE*QSGQNT Trigger: CGTGTTCTGTCCACTTTGCCATTCACGACCTGATGA...AGATGCTGCTTGAAGGACTGGAGGGGGATTGTCGACGTTTGATGGAGAAACATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050004.3 ENSMUST00000234316.2 |
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| CDS-3UTR TCA 90 bp | ACACACATCACTAATGGACACAGGAAGCTGCTCCATCACATAGCCAGCCTGTGTTCATCCAGTTCCCGCTaGCAAAATGGACATACACAT | + |
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Preference number: 4 (lower is better) Translates to: THITNGHRKLLHHIASLCSSSSR*QNGHTH Trigger: ATGTGTATGTCCATTTTGTCAGCGGGAACTGGATGA...ACACAGGCTGGCTATGTGATGGAGCAGCTTCCTGTGTCCATTAGTGATGTGTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050004.3 ENSMUST00000234316.2 |
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| CDS-3UTR CCA 90 bp | GCTAAATTGGATTTTGGTGACTTCAAATTCTTCCCTTTCCTCCTTTTCATAAGACGGGTCCGGACCGGCTaGTGTAGCACCTCCAGACAC | + |
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Preference number: 4 (lower is better) Translates to: AKLDFGDFKFFPFLLFIRRVRTG*CSTSRH Trigger: GTGTCTGGAGGTGCTACACCAGCCGGTCCGGACCCG...TCTTATGAAAAGGAGGAAAGGGAAGAATTTGAAGTCACCAAAATCCAATTTAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000234316.2 |
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| CDS-3UTR TCA 90 bp | GCTAAATTGGATTTTGGTGACTTCAAATTCTTCCCTTTCCTCCTTTTCATAAGATGCGGGCACTCCCTCTaGAGGAAGGTATGCCCGGCA | + |
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Preference number: 4 (lower is better) Translates to: AKLDFGDFKFFPFLLFIRCGHSL*RKVCPA Trigger: TGCCGGGCATACCTTCCTTCAGAGGGAGTGCCCGCA...TCTTATGAAAAGGAGGAAAGGGAAGAATTTGAAGTCACCAAAATCCAATTTAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000234316.2 |
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| 3UTR CAA 72 bp | TTGTTCCTTTCTCCGTCTTTTAGCATGGAACAGAGATaGGCTTTCTCGCCTAACCATGATGACAGTTGGGAA | + |
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Preference number: 4 (lower is better) Translates to: LFLSPSFSMEQR*AFSPNHDDSWE Trigger: TTCCCAACTGTCATCATGGTTAGGCGAGAAAGCCAATCTCTGTTCCATGCTAAAAGACGGAGAAAGGAACAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050004.3 ENSMUST00000234316.2 |
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| CDS-3UTR CCA 90 bp | ATGTCTAATAGACTCAAGAATGTAAGGGCAGATCTAAGCCAGAATGAACACGGTTCATCAGGTCGTGAATaGCAAAGTGGACAGAACACG | + |
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Preference number: 4 (lower is better) Translates to: MSNRLKNVRADLSQNEHGSSGRE*QSGQNT Trigger: CGTGTTCTGTCCACTTTGCCATTCACGACCTGATGA...ACCGTGTTCATTCTGGCTTAGATCTGCCCTTACATTCTTGAGTCTATTAGACAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050004.3 ENSMUST00000234316.2 |
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| CDS-3UTR TCA 90 bp | ATGTCTAATAGACTCAAGAATGTAAGGGCAGATCTAAGCCAGAATGAACACGGTTGGTGGATAATGCAATaGTCCAGCAAGCAGTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: MSNRLKNVRADLSQNEHGWWIMQ*SSKQSS Trigger: TGAAGACTGCTTGCTGGATCATTGCATTATCCACCA...ACCGTGTTCATTCTGGCTTAGATCTGCCCTTACATTCTTGAGTCTATTAGACAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050004.3 ENSMUST00000234316.2 |
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| CDS-3UTR TCA 90 bp | ATGTCCATATTTTGTTCCTTTCTCCGTCTTTTAGCATGGAACAGAGATTGGCTTTGGTGGATAATGCAATaGTCCAGCAAGCAGTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: MSIFCSFLRLLAWNRDWLWWIMQ*SSKQSS Trigger: TGAAGACTGCTTGCTGGATCATTGCATTATCCACCA...AAGCCAATCTCTGTTCCATGCTAAAAGACGGAGAAAGGAACAAAATATGGACAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050004.3 ENSMUST00000234316.2 |
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| CDS-3UTR GCA 90 bp | TGCCTGGCTAAGAATACACTTCAAACGCAGAAGTTGTTGCAGTATTATATTATGTGGACATACACATCTTaGTGTGGTGTCGCCAAGTTC | + |
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Preference number: 4 (lower is better) Translates to: CLAKNTLQTQKLLQYYIMWTYTS*CGVAKF Trigger: GAACTTGGCGACACCACAGCAAGATGTGTATGTCCA...CATAATATAATACTGCAACAACTTCTGCGTTTGAAGTGTATTCTTAGCCAGGCA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050004.3 |
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| CDS-3UTR GCA 90 bp | CCTTTAATGTCCATATTTTGTTCCTTTCTCCGTCTTTTAGCATGGAACAGAGATTGGACATACACATCTTaGTGTGGTGTCGCCAAGTTC | + |
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Preference number: 4 (lower is better) Translates to: PLMSIFCSFLRLLAWNRDWTYTS*CGVAKF Trigger: GAACTTGGCGACACCACAGCAAGATGTGTATGTCCA...ATCTCTGTTCCATGCTAAAAGACGGAGAAAGGAACAAAATATGGACATTAAAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050004.3 ENSMUST00000234316.2 |
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| CDS-3UTR TCA 90 bp | CCTTTAATGTCCATATTTTGTTCCTTTCTCCGTCTTTTAGCATGGAACAGAGATTCATCCAGTTCCCGCTaGCAAAATGGACATACACAT | + |
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Preference number: 4 (lower is better) Translates to: PLMSIFCSFLRLLAWNRDSSSSR*QNGHTH Trigger: ATGTGTATGTCCATTTTGTCAGCGGGAACTGGATGA...ATCTCTGTTCCATGCTAAAAGACGGAGAAAGGAACAAAATATGGACATTAAAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000050004.3 ENSMUST00000234316.2 |
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| CDS-3UTR CCA 90 bp | ATGTCCATATTTTGTTCCTTTCTCCGTCTTTTAGCATGGAACAGAGATTGGCTTGTATGCCCGGCAGTATaGACATGTCCATTTATTATT | + |
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Preference number: 4 (lower is better) Translates to: MSIFCSFLRLLAWNRDWLVCPAV*TCPFII Trigger: AATAATAAATGGACATGTCCATACTGCCGGGCATAC...AAGCCAATCTCTGTTCCATGCTAAAAGACGGAGAAAGGAACAAAATATGGACAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000234316.2 |
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| CDS-3UTR CCA 90 bp | GCTAAATTGGATTTTGGTGACTTCAAATTCTTCCCTTTCCTCCTTTTCATAAGATTCCCGCTGACAAAATaGACATACACATCTTGCTGT | + |
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Preference number: 4 (lower is better) Translates to: AKLDFGDFKFFPFLLFIRFPLTK*TYTSCC Trigger: ACAGCAAGATGTGTATGTCCATTTTGTCAGCGGGAA...TCTTATGAAAAGGAGGAAAGGGAAGAATTTGAAGTCACCAAAATCCAATTTAGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000050004.3 ENSMUST00000234316.2 |
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| 3UTR CAA 72 bp | CCATGCCTGGCTAAGAATACACTTCAAACGCAGAAGTaGTTGCAGTATTATATTATGTACTATAATTTGGCT | + |
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Preference number: 4 (lower is better) Translates to: PCLAKNTLQTQK*LQYYIMYYNLA Trigger: AGCCAAATTATAGTACATAATATAATACTGCAACAACTTCTGCGTTTGAAGTGTATTCTTAGCCAGGCATGG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050004.3 |
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| CDS TCA 90 bp | CCGGCTGGTGTAGCACCTCCAGACACACTGAGCAGTCGAAGGAGGTaGTGGGCAGCTCCGAGTCCCCGCTGCGCTCCAGAGTCCGCGGGG | + |
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Preference number: 5 (lower is better) Translates to: PAGVAPPDTLSSRRR*WAAPSPRCAPESAG Trigger: CCCCGCGGACTCTGGAGCGCAGCGGGGACTCGGAGCTGCCCATCACCTCCTTCGACTGCTCAGTGTGTCTGGAGGTGCTACACCAGCCGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000234316.2 |
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| CDS CCA 90 bp | ATGCAAGATCGGCAGAACACGTGGCCACAGCGGGTCCGGACCGGCTaGTGTAGCACCTCCAGACACACTGAGCAGTCGAAGGAGGTGATG | + |
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Preference number: 5 (lower is better) Translates to: MQDRQNTWPQRVRTG*CSTSRHTEQSKEVM Trigger: CATCACCTCCTTCGACTGCTCAGTGTGTCTGGAGGTGCTACACCAGCCGGTCCGGACCCGCTGTGGCCACGTGTTCTGCCGATCTTGCAT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234316.2 |
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| CDS-3UTR CAA 90 bp | ACACACATCACTAATGGACACAGGAAGCTGCTCCATCACATAGCCAGCCTGTGTGAGGCGGGCGCGGACTaGGAGCTGTCGCTGCTCAGC | + |
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Preference number: 5 (lower is better) Translates to: THITNGHRKLLHHIASLCEAGAD*ELSLLS Trigger: GCTGAGCAGCGACAGCTCCAAGTCCGCGCCCGCCTC...ACACAGGCTGGCTATGTGATGGAGCAGCTTCCTGTGTCCATTAGTGATGTGTGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234316.2 |
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| CDS CCA 90 bp | TTATTGTTCTTTATACTGGTCGCAATGCAAGATCGGCAGAACACGTaGCCACAGCGGGTCCGGACCGGCTGGTGTAGCACCTCCAGACAC | + |
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Preference number: 5 (lower is better) Translates to: LLFFILVAMQDRQNT*PQRVRTGWCSTSRH Trigger: GTGTCTGGAGGTGCTACACCAGCCGGTCCGGACCCGCTGTGGCCACGTGTTCTGCCGATCTTGCATTGCGACCAGTATAAAGAACAATAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234316.2 |
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| CDS CCA 90 bp | GAGTTCCACACTCAGCACAGTTCTGGTATTCTGACTTCATCCTCTTaGCTATGTCAGTTGCGGGCACTCCCTCTGAAGGAAGGTATGCCC | + |
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Preference number: 5 (lower is better) Translates to: EFHTQHSSGILTSSS*LCQLRALPLKEGMP Trigger: GGGCATACCTTCCTTCAGAGGGAGTGCCCGCAACTGACATAGCCAAGAGGATGAAGTCAGAATACCAGAACTGTGCTGAGTGTGGAACTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234316.2 |
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| CDS GCA 90 bp | AGCAGCGGGCCATATTTATCGATGTACTTCTCACAGGTCCTTATGTaGGCCCTCATGTCACTGAGGCAAACCAGAGTTCCACACTCAGCA | + |
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Preference number: 5 (lower is better) Translates to: SSGPYLSMYFSQVLM*ALMSLRQTRVPHSA Trigger: TGCTGAGTGTGGAACTCTGGTTTGCCTCAGTGACATGAGGGCGCACATAAGGACCTGTGAGAAGTACATCGATAAATATGGCCCGCTGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050004.3 ENSMUST00000234316.2 |
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| CDS-3UTR CAA 90 bp | CATGTTTCTCCATCAAACGTCGACAATCCCCCTCCAGTCCTTCAAGCAGCATCTTCTGACTTCATCCTCTaGGCTATGTCAGTTGCGGGC | + |
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Preference number: 5 (lower is better) Translates to: HVSPSNVDNPPPVLQAASSDFIL*AMSVAG Trigger: GCCCGCAACTGACATAGCCAAGAGGATGAAGTCAGA...AGATGCTGCTTGAAGGACTGGAGGGGGATTGTCGACGTTTGATGGAGAAACATG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000234316.2 |
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| CDS GCA 90 bp | AGTATGGACATGTCCATTTATTATTGTTCTTTATACTGGTCGCAATaGAAGATCGGCAGAACACGTGGCCACAGCGGGTCCGGACCGGCT | + |
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Preference number: 5 (lower is better) Translates to: SMDMSIYYCSLYWSQ*KIGRTRGHSGSGPA Trigger: AGCCGGTCCGGACCCGCTGTGGCCACGTGTTCTGCCGATCTTGCATTGCGACCAGTATAAAGAACAATAATAAATGGACATGTCCATACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234316.2 |
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| CDS CCA 90 bp | ATGCCCGGCAGTATGGACATGTCCATTTATTATTGTTCTTTATACTaGTCGCAATGCAAGATCGGCAGAACACGTGGCCACAGCGGGTCC | + |
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Preference number: 5 (lower is better) Translates to: MPGSMDMSIYYCSLY*SQCKIGRTRGHSGS Trigger: GGACCCGCTGTGGCCACGTGTTCTGCCGATCTTGCATTGCGACCAGTATAAAGAACAATAATAAATGGACATGTCCATACTGCCGGGCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234316.2 |
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| CDS CCA 90 bp | CTCATGTCACTGAGGCAAACCAGAGTTCCACACTCAGCACAGTTCTaGTATTCTGACTTCATCCTCTTGGCTATGTCAGTTGCGGGCACT | + |
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Preference number: 5 (lower is better) Translates to: LMSLRQTRVPHSAQF*YSDFILLAMSVAGT Trigger: AGTGCCCGCAACTGACATAGCCAAGAGGATGAAGTCAGAATACCAGAACTGTGCTGAGTGTGGAACTCTGGTTTGCCTCAGTGACATGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234316.2 |
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| CDS CCA 90 bp | ATTAAACTGCCATTGAAGGTACTTGGGCTTTCATCAGGTCGTGAATaGCAAAGTGGACAGAACACGGGCCTCCTTTCTGATCTGTGGTGG | + |
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Preference number: 5 (lower is better) Translates to: IKLPLKVLGLSSGRE*QSGQNTGLLSDLWW Trigger: CCACCACAGATCAGAAAGGAGGCCCGTGTTCTGTCCACTTTGCCATTCACGACCTGATGAAAGCCCAAGTACCTTCAATGGCAGTTTAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050004.3 ENSMUST00000234316.2 |
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| CDS-3UTR CAA 90 bp | ACACACATCACTAATGGACACAGGAAGCTGCTCCATCACATAGCCAGCCTGTGTATGGACATACACATCTaGCTGTGGTGTCGCCAAGTT | + |
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Preference number: 5 (lower is better) Translates to: THITNGHRKLLHHIASLCMDIHI*LWCRQV Trigger: AACTTGGCGACACCACAGCAAGATGTGTATGTCCAT...ACACAGGCTGGCTATGTGATGGAGCAGCTTCCTGTGTCCATTAGTGATGTGTGT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050004.3 ENSMUST00000234316.2 |
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| CDS CCA 90 bp | CTTCATCCAGTTCCCGCTGACAAAATGGACATACACATCTTGCTGTaGTGTCGCCAAGTTCTAGCAGCGGGCCATATTTATCGATGTACT | + |
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Preference number: 5 (lower is better) Translates to: LHPVPADKMDIHILL*CRQVLAAGHIYRCT Trigger: AGTACATCGATAAATATGGCCCGCTGCTAGAACTTGGCGACACCACAGCAAGATGTGTATGTCCATTTTGTCAGCGGGAACTGGATGAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050004.3 ENSMUST00000234316.2 |
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| CDS-3UTR CAA 90 bp | TCCATCAAACGTCGACAATCCCCCTCCAGTCCTTCAAGCAGCATCTTAAATGGTCTAATTAAACTGCCATaGAAGGTACTTGGGCTTTCA | + |
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Preference number: 5 (lower is better) Translates to: SIKRRQSPSSPSSSILNGLIKLP*KVLGLS Trigger: TGAAAGCCCAAGTACCTTCAATGGCAGTTTAATTAG...ACCATTTAAGATGCTGCTTGAAGGACTGGAGGGGGATTGTCGACGTTTGATGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050004.3 ENSMUST00000234316.2 |
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| CDS-3UTR CAA 90 bp | CCTTTAATGTCCATATTTTGTTCCTTTCTCCGTCTTTTAGCATGGAACAGAGATATGGACATACACATCTaGCTGTGGTGTCGCCAAGTT | + |
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Preference number: 5 (lower is better) Translates to: PLMSIFCSFLRLLAWNRDMDIHI*LWCRQV Trigger: AACTTGGCGACACCACAGCAAGATGTGTATGTCCAT...ATCTCTGTTCCATGCTAAAAGACGGAGAAAGGAACAAAATATGGACATTAAAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050004.3 ENSMUST00000234316.2 |
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| CDS-3UTR CAA 90 bp | ATGTCCATATTTTGTTCCTTTCTCCGTCTTTTAGCATGGAACAGAGATTGGCTTCTAATTAAACTGCCATaGAAGGTACTTGGGCTTTCA | + |
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Preference number: 5 (lower is better) Translates to: MSIFCSFLRLLAWNRDWLLIKLP*KVLGLS Trigger: TGAAAGCCCAAGTACCTTCAATGGCAGTTTAATTAG...AAGCCAATCTCTGTTCCATGCTAAAAGACGGAGAAAGGAACAAAATATGGACAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050004.3 ENSMUST00000234316.2 |
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| CDS CCA 72 bp | GCTCCGAGTCCCCGCTGCGCTCCAGAGTCCGCGGGGTaGCGGAGGCGGGCGCGGACTTGGAGCTGTCGCTGC | + |
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Preference number: 6 (lower is better) Translates to: APSPRCAPESAG*RRRARTWSCRC Trigger: GCAGCGACAGCTCCAAGTCCGCGCCCGCCTCCGCCACCCCGCGGACTCTGGAGCGCAGCGGGGACTCGGAGC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000234316.2 |
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| CDS CCA 72 bp | CGGCAGAACACGTGGCCACAGCGGGTCCGGACCGGCTaGTGTAGCACCTCCAGACACACTGAGCAGTCGAAG | + |
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Preference number: 6 (lower is better) Translates to: RQNTWPQRVRTG*CSTSRHTEQSK Trigger: CTTCGACTGCTCAGTGTGTCTGGAGGTGCTACACCAGCCGGTCCGGACCCGCTGTGGCCACGTGTTCTGCCG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234316.2 |
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| CDS CCA 72 bp | TTTATACTGGTCGCAATGCAAGATCGGCAGAACACGTaGCCACAGCGGGTCCGGACCGGCTGGTGTAGCACC | + |
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Preference number: 6 (lower is better) Translates to: FILVAMQDRQNT*PQRVRTGWCST Trigger: GGTGCTACACCAGCCGGTCCGGACCCGCTGTGGCCACGTGTTCTGCCGATCTTGCATTGCGACCAGTATAAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234316.2 |
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| CDS TCA 72 bp | CATCCTCTTGGCTATGTCAGTTGCGGGCACTCCCTCTaGAGGAAGGTATGCCCGGCAGTATGGACATGTCCA | + |
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Preference number: 6 (lower is better) Translates to: HPLGYVSCGHSL*RKVCPAVWTCP Trigger: TGGACATGTCCATACTGCCGGGCATACCTTCCTTCAGAGGGAGTGCCCGCAACTGACATAGCCAAGAGGATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234316.2 |
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| CDS CAA 72 bp | TCTGGTATTCTGACTTCATCCTCTTGGCTATGTCAGTaGCGGGCACTCCCTCTGAAGGAAGGTATGCCCGGC | + |
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Preference number: 6 (lower is better) Translates to: SGILTSSSWLCQ*RALPLKEGMPG Trigger: GCCGGGCATACCTTCCTTCAGAGGGAGTGCCCGCAACTGACATAGCCAAGAGGATGAAGTCAGAATACCAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234316.2 |
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| CDS CAA 90 bp | CAGCACAGTTCTGGTATTCTGACTTCATCCTCTTGGCTATGTCAGTaGCGGGCACTCCCTCTGAAGGAAGGTATGCCCGGCAGTATGGAC | + |
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Preference number: 6 (lower is better) Translates to: QHSSGILTSSSWLCQ*RALPLKEGMPGSMD Trigger: GTCCATACTGCCGGGCATACCTTCCTTCAGAGGGAGTGCCCGCAACTGACATAGCCAAGAGGATGAAGTCAGAATACCAGAACTGTGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234316.2 |
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| CDS CAA 72 bp | CATCCAGTTCCCGCTGACAAAATGGACATACACATCTaGCTGTGGTGTCGCCAAGTTCTAGCAGCGGGCCAT | + |
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Preference number: 6 (lower is better) Translates to: HPVPADKMDIHI*LWCRQVLAAGH Trigger: ATGGCCCGCTGCTAGAACTTGGCGACACCACAGCAAGATGTGTATGTCCATTTTGTCAGCGGGAACTGGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050004.3 ENSMUST00000234316.2 |
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| CDS CAA 90 bp | AGAGTTCCACACTCAGCACAGTTCTGGTATTCTGACTTCATCCTCTaGGCTATGTCAGTTGCGGGCACTCCCTCTGAAGGAAGGTATGCC | + |
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Preference number: 6 (lower is better) Translates to: RVPHSAQFWYSDFIL*AMSVAGTPSEGRYA Trigger: GGCATACCTTCCTTCAGAGGGAGTGCCCGCAACTGACATAGCCAAGAGGATGAAGTCAGAATACCAGAACTGTGCTGAGTGTGGAACTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234316.2 |
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| CDS TCA 72 bp | ACTGCCATTGAAGGTACTTGGGCTTTCATCAGGTCGTaGATGGCAAAGTGGACAGAACACGGGCCTCCTTTC | + |
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Preference number: 6 (lower is better) Translates to: TAIEGTWAFIRS*MAKWTEHGPPF Trigger: GAAAGGAGGCCCGTGTTCTGTCCACTTTGCCATTCACGACCTGATGAAAGCCCAAGTACCTTCAATGGCAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050004.3 ENSMUST00000234316.2 |
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| CDS CCA 72 bp | CAGCAAGCAGTCTTCATCCAGTTCCCGCTGACAAAATaGACATACACATCTTGCTGTGGTGTCGCCAAGTTC | + |
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Preference number: 6 (lower is better) Translates to: QQAVFIQFPLTK*TYTSCCGVAKF Trigger: GAACTTGGCGACACCACAGCAAGATGTGTATGTCCATTTTGTCAGCGGGAACTGGATGAAGACTGCTTGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050004.3 ENSMUST00000234316.2 |
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| CDS CCA 72 bp | CCATTGAAGGTACTTGGGCTTTCATCAGGTCGTGAATaGCAAAGTGGACAGAACACGGGCCTCCTTTCTGAT | + |
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Preference number: 6 (lower is better) Translates to: PLKVLGLSSGRE*QSGQNTGLLSD Trigger: ATCAGAAAGGAGGCCCGTGTTCTGTCCACTTTGCCATTCACGACCTGATGAAAGCCCAAGTACCTTCAATGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050004.3 ENSMUST00000234316.2 |
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| CDS CCA 72 bp | ACTCAGCACAGTTCTGGTATTCTGACTTCATCCTCTTaGCTATGTCAGTTGCGGGCACTCCCTCTGAAGGAA | + |
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Preference number: 6 (lower is better) Translates to: TQHSSGILTSSS*LCQLRALPLKE Trigger: TTCCTTCAGAGGGAGTGCCCGCAACTGACATAGCCAAGAGGATGAAGTCAGAATACCAGAACTGTGCTGAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234316.2 |
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| CDS CCA 72 bp | GTTCCCGCTGACAAAATGGACATACACATCTTGCTGTaGTGTCGCCAAGTTCTAGCAGCGGGCCATATTTAT | + |
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Preference number: 6 (lower is better) Translates to: VPADKMDIHILL*CRQVLAAGHIY Trigger: ATAAATATGGCCCGCTGCTAGAACTTGGCGACACCACAGCAAGATGTGTATGTCCATTTTGTCAGCGGGAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050004.3 ENSMUST00000234316.2 |
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| CDS GCA 72 bp | CCATATTTATCGATGTACTTCTCACAGGTCCTTATGTaGGCCCTCATGTCACTGAGGCAAACCAGAGTTCCA | + |
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Preference number: 6 (lower is better) Translates to: PYLSMYFSQVLM*ALMSLRQTRVP Trigger: TGGAACTCTGGTTTGCCTCAGTGACATGAGGGCGCACATAAGGACCTGTGAGAAGTACATCGATAAATATGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050004.3 ENSMUST00000234316.2 |
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| CDS GCA 72 bp | ATGTCCATTTATTATTGTTCTTTATACTGGTCGCAATaGAAGATCGGCAGAACACGTGGCCACAGCGGGTCC | + |
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Preference number: 6 (lower is better) Translates to: MSIYYCSLYWSQ*KIGRTRGHSGS Trigger: GGACCCGCTGTGGCCACGTGTTCTGCCGATCTTGCATTGCGACCAGTATAAAGAACAATAATAAATGGACAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234316.2 |
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| CDS CCA 72 bp | CTGAGGCAAACCAGAGTTCCACACTCAGCACAGTTCTaGTATTCTGACTTCATCCTCTTGGCTATGTCAGTT | + |
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Preference number: 6 (lower is better) Translates to: LRQTRVPHSAQF*YSDFILLAMSV Trigger: AACTGACATAGCCAAGAGGATGAAGTCAGAATACCAGAACTGTGCTGAGTGTGGAACTCTGGTTTGCCTCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234316.2 |
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| CDS CCA 72 bp | AGTATGGACATGTCCATTTATTATTGTTCTTTATACTaGTCGCAATGCAAGATCGGCAGAACACGTGGCCAC | + |
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Preference number: 6 (lower is better) Translates to: SMDMSIYYCSLY*SQCKIGRTRGH Trigger: GTGGCCACGTGTTCTGCCGATCTTGCATTGCGACCAGTATAAAGAACAATAATAAATGGACATGTCCATACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234316.2 |
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