Pregenerated sensors for RNF115 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028098Ensembl transcript IDs: ENSMUST00000029740.14, ENSMUST00000199051.5
Found 87 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCTGTCGGGACGAGTACTTCCGCGAGACCTGTATCTTCTTGTCATTaGCAACCTTGGAGGCCGACTTGGTCCCCAAAAGTCAGTGTGAGT | + |
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Preference number: 1 (lower is better) Translates to: PVGTSTSARPVSSCH*QPWRPTWSPKVSVS Trigger: ACTCACACTGACTTTTGGGGACCAAGTCGGCCTCCAAGGTTGCCAATGACAAGAAGATACAGGTCTCGCGGAAGTACTCGTCCCGACAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR CCA 90 bp | GCGAGACCTGTATCTTCTTGTCATTGGCAACCTTGGAGGCCGACTTaGTCCCCAAAAGTCAGTGTGAGTTTGGTGACCTCTCTCATTGGC | + |
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Preference number: 1 (lower is better) Translates to: ARPVSSCHWQPWRPT*SPKVSVSLVTSLIG Trigger: GCCAATGAGAGAGGTCACCAAACTCACACTGACTTTTGGGGACCAAGTCGGCCTCCAAGGTTGCCAATGACAAGAAGATACAGGTCTCGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR CCA 90 bp | ACGAGTACTTCCGCGAGACCTGTATCTTCTTGTCATTGGCAACCTTaGAGGCCGACTTGGTCCCCAAAAGTCAGTGTGAGTTTGGTGACC | + |
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Preference number: 1 (lower is better) Translates to: TSTSARPVSSCHWQP*RPTWSPKVSVSLVT Trigger: GGTCACCAAACTCACACTGACTTTTGGGGACCAAGTCGGCCTCCAAGGTTGCCAATGACAAGAAGATACAGGTCTCGCGGAAGTACTCGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR GCA 90 bp | TCATTGCTAAATCTGTTGCTTGCAGAGGCCTCAGAGCTCTGGGTTTaGCGAGTAGAGTCCTCACCATTTAAGCTCTTCCTACATACTGGG | + |
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Preference number: 1 (lower is better) Translates to: SLLNLLLAEASELWV*RVESSPFKLFLHTG Trigger: CCCAGTATGTAGGAAGAGCTTAAATGGTGAGGACTCTACTCGGCAAACCCAGAGCTCTGAGGCCTCTGCAAGCAACAGATTTAGCAATGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR CCA 90 bp | TGGCTGTCATTGCTAAATCTGTTGCTTGCAGAGGCCTCAGAGCTCTaGGTTTGCCGAGTAGAGTCCTCACCATTTAAGCTCTTCCTACAT | + |
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Preference number: 1 (lower is better) Translates to: WLSLLNLLLAEASEL*VCRVESSPFKLFLH Trigger: ATGTAGGAAGAGCTTAAATGGTGAGGACTCTACTCGGCAAACCCAGAGCTCTGAGGCCTCTGCAAGCAACAGATTTAGCAATGACAGCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR TCA 90 bp | GGAAGGACTCCTCACCAAATTATAGCGCCCTTGTTCTGCTCATTCTaGACTATGAAGCACTATAGTCACTCCACACATGGAGCTGCTGCT | + |
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Preference number: 1 (lower is better) Translates to: GRTPHQIIAPLFCSF*TMKHYSHSTHGAAA Trigger: AGCAGCAGCTCCATGTGTGGAGTGACTATAGTGCTTCATAGTTCAGAATGAGCAGAACAAGGGCGCTATAATTTGGTGAGGAGTCCTTCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR CCA 90 bp | TGCAAAGAATCCTGCAAAGATCTGTTGTATTATTCCTTCGATAGCTaGCGACCTGTCGGGACGAGTACTTCCGCGAGACCTGTATCTTCT | + |
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Preference number: 1 (lower is better) Translates to: CKESCKDLLYYSFDS*RPVGTSTSARPVSS Trigger: AGAAGATACAGGTCTCGCGGAAGTACTCGTCCCGACAGGTCGCCAGCTATCGAAGGAATAATACAACAGATCTTTGCAGGATTCTTTGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR CCA 90 bp | GACTTGGTCCCCAAAAGTCAGTGTGAGTTTGGTGACCTCTCTCATTaGCTCTATTATCTTGGTCCAGTGGATTGCTACTTAGAAATGGTC | + |
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Preference number: 1 (lower is better) Translates to: DLVPKSQCEFGDLSH*LYYLGPVDCYLEMV Trigger: GACCATTTCTAAGTAGCAATCCACTGGACCAAGATAATAGAGCCAATGAGAGAGGTCACCAAACTCACACTGACTTTTGGGGACCAAGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR TCA 90 bp | GGATTGCTACTTAGAAATGGTCTAAAATCTTGTAAAAACATTGTGTaGTCCAGATGGTCCCAAAGATCGAGAAGACTGCCAGGCTCACAC | + |
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Preference number: 1 (lower is better) Translates to: GLLLRNGLKSCKNIV*SRWSQRSRRLPGSH Trigger: GTGTGAGCCTGGCAGTCTTCTCGATCTTTGGGACCATCTGGATCACACAATGTTTTTACAAGATTTTAGACCATTTCTAAGTAGCAATCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR-3UTR CCA 90 bp | TGTAACTGTTGGGAGAGATGTGATCTTCTCCTTGTCGGCTGGAGGGGGACCCGTCATAGTCCCCAGGGTTaGAGTGCAGCATCCCGCTCC | + |
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Preference number: 2 (lower is better) Translates to: CNCWERCDLLLVGWRGTRHSPQG*SAASRS Trigger: GGAGCGGGATGCTGCACTCCAACCCTGGGGACTATG...ACGGGTCCCCCTCCAGCCGACAAGGAGAAGATCACATCTCTCCCAACAGTTACA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR CAA 90 bp | ACCTGTCGGGACGAGTACTTCCGCGAGACCTGTATCTTCTTGTCATaGGCAACCTTGGAGGCCGACTTGGTCCCCAAAAGTCAGTGTGAG | + |
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Preference number: 2 (lower is better) Translates to: TCRDEYFRETCIFLS*ATLEADLVPKSQCE Trigger: CTCACACTGACTTTTGGGGACCAAGTCGGCCTCCAAGGTTGCCAATGACAAGAAGATACAGGTCTCGCGGAAGTACTCGTCCCGACAGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR-3UTR GCA 90 bp | GGGATTACAGGAGCCATGCCACAGGACTGGTCTCTGAACCATACCTCTAATGACTCCCCAGGGTTGGAGTaGAGCATCCCGCTCCAAGAA | + |
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Preference number: 2 (lower is better) Translates to: GITGAMPQDWSLNHTSNDSPGLE*SIPLQE Trigger: TTCTTGGAGCGGGATGCTGCACTCCAACCCTGGGGA...GTCATTAGAGGTATGGTTCAGAGACCAGTCCTGTGGCATGGCTCCTGTAATCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR-3UTR CCA 90 bp | GGCTATTATGTCAGCAGCCCTCACCCCGCCAATCTCCATCTCTTTCTTTTCACTCTTCTCCTTGTCGGCTaGAGGGGGACCCGTGTTTTC | + |
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Preference number: 2 (lower is better) Translates to: GYYVSSPHPANLHLFLFTLLLVG*RGTRVF Trigger: GAAAACACGGGTCCCCCTCCAGCCGACAAGGAGAAG...AGTGAAAAGAAAGAGATGGAGATTGGCGGGGTGAGGGCTGCTGACATAATAGCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR CAA 90 bp | CGCGAGACCTGTATCTTCTTGTCATTGGCAACCTTGGAGGCCGACTaGGTCCCCAAAAGTCAGTGTGAGTTTGGTGACCTCTCTCATTGG | + |
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Preference number: 2 (lower is better) Translates to: RETCIFLSLATLEAD*VPKSQCEFGDLSHW Trigger: CCAATGAGAGAGGTCACCAAACTCACACTGACTTTTGGGGACCAAGTCGGCCTCCAAGGTTGCCAATGACAAGAAGATACAGGTCTCGCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR CAA 90 bp | GACGAGTACTTCCGCGAGACCTGTATCTTCTTGTCATTGGCAACCTaGGAGGCCGACTTGGTCCCCAAAAGTCAGTGTGAGTTTGGTGAC | + |
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Preference number: 2 (lower is better) Translates to: DEYFRETCIFLSLAT*EADLVPKSQCEFGD Trigger: GTCACCAAACTCACACTGACTTTTGGGGACCAAGTCGGCCTCCAAGGTTGCCAATGACAAGAAGATACAGGTCTCGCGGAAGTACTCGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR-3UTR GCA 90 bp | GGCTATTATGTCAGCAGCCCTCACCCCGCCAATCTCCATCTCTTTCTTTTCACTACTGGGCATGTGTCATaGAGTTCTAACCAGGGCACG | + |
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Preference number: 2 (lower is better) Translates to: GYYVSSPHPANLHLFLFTTGHVS*SSNQGT Trigger: CGTGCCCTGGTTAGAACTGCATGACACATGCCCAGT...AGTGAAAAGAAAGAGATGGAGATTGGCGGGGTGAGGGCTGCTGACATAATAGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR-3UTR GCA 90 bp | GGGATTACAGGAGCCATGCCACAGGACTGGTCTCTGAACCATACCTCTAATGACGCTAAATCTGTTGCTTaGAGAGGCCTCAGAGCTCTG | + |
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Preference number: 2 (lower is better) Translates to: GITGAMPQDWSLNHTSNDAKSVA*RGLRAL Trigger: CAGAGCTCTGAGGCCTCTGCAAGCAACAGATTTAGC...GTCATTAGAGGTATGGTTCAGAGACCAGTCCTGTGGCATGGCTCCTGTAATCCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR-3UTR GCA 90 bp | GGCTATTATGTCAGCAGCCCTCACCCCGCCAATCTCCATCTCTTTCTTTTCACTCTAACCAGGGCACGATaGAGCTGCTGTGAAAGAAGT | + |
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Preference number: 2 (lower is better) Translates to: GYYVSSPHPANLHLFLFTLTRAR*SCCERS Trigger: ACTTCTTTCACAGCAGCTGCATCGTGCCCTGGTTAG...AGTGAAAAGAAAGAGATGGAGATTGGCGGGGTGAGGGCTGCTGACATAATAGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR-3UTR TCA 90 bp | CCTTGGAGGCCGACTTGGTCCCCAAAAGTCAGTGTGAGTTTGGTGACCTCTCTCTGGGGGTTTCTTACATaGTTCCTAAATCCATCTACT | + |
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Preference number: 2 (lower is better) Translates to: PWRPTWSPKVSVSLVTSLWGFLT*FLNPST Trigger: AGTAGATGGATTTAGGAATCATGTAAGAAACCCCCA...GAGAGAGGTCACCAAACTCACACTGACTTTTGGGGACCAAGTCGGCCTCCAAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR CAA 90 bp | GGATCCAGGAATGGCAGAATTTGCAAAGAATCCTGCAAAGATCTGTaGTATTATTCCTTCGATAGCTGGCGACCTGTCGGGACGAGTACT | + |
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Preference number: 2 (lower is better) Translates to: GSRNGRICKESCKDL*YYSFDSWRPVGTST Trigger: AGTACTCGTCCCGACAGGTCGCCAGCTATCGAAGGAATAATACAACAGATCTTTGCAGGATTCTTTGCAAATTCTGCCATTCCTGGATCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR-3UTR CCA 90 bp | TTTCTTGATTTGCTCTCTGATCATCAAGACAGAACAGCGTTAGAGTCTCAGACCCCAAGAAAAGGGGTGTaGGGATCCAGGAATGGCAGA | + |
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Preference number: 2 (lower is better) Translates to: FLDLLSDHQDRTALESQTPRKGV*GSRNGR Trigger: TCTGCCATTCCTGGATCCCCACACCCCTTTTCTTGG...GGTCTGAGACTCTAACGCTGTTCTGTCTTGATGATCAGAGAGCAAATCAAGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR-3UTR CCA 90 bp | GGGATTACAGGAGCCATGCCACAGGACTGGTCTCTGAACCATACCTCTAATGACAGTTACTGTAACTGTTaGGAGAGATGTGATCTTCTC | + |
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Preference number: 2 (lower is better) Translates to: GITGAMPQDWSLNHTSNDSYCNC*ERCDLL Trigger: GAGAAGATCACATCTCTCCCAACAGTTACAGTAACT...GTCATTAGAGGTATGGTTCAGAGACCAGTCCTGTGGCATGGCTCCTGTAATCCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR-3UTR TCA 90 bp | GGGATTACAGGAGCCATGCCACAGGACTGGTCTCTGAACCATACCTCTAATGACTTGTTCTGCTCATTCTaGACTATGAAGCACTATAGT | + |
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Preference number: 2 (lower is better) Translates to: GITGAMPQDWSLNHTSNDLFCSF*TMKHYS Trigger: ACTATAGTGCTTCATAGTTCAGAATGAGCAGAACAA...GTCATTAGAGGTATGGTTCAGAGACCAGTCCTGTGGCATGGCTCCTGTAATCCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR-3UTR GCA 90 bp | AGTAGTAAAATCTCCCACATCTCCCGTCTATATGCTGCTCAATTTAATGTCACATCAGAGCTCTGGGTTTaGCGAGTAGAGTCCTCACCA | + |
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Preference number: 2 (lower is better) Translates to: SSKISHISRLYAAQFNVTSELWV*RVESSP Trigger: TGGTGAGGACTCTACTCGGCAAACCCAGAGCTCTGA...TGTGACATTAAATTGAGCAGCATATAGACGGGAGATGTGGGAGATTTTACTACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR-3UTR GCA 90 bp | AGTAGTAAAATCTCCCACATCTCCCGTCTATATGCTGCTCAATTTAATGTCACATGTGAAAGAAGTGGTTaGAGGGTAACTGCCGGACTT | + |
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Preference number: 2 (lower is better) Translates to: SSKISHISRLYAAQFNVTCERSG*RVTAGL Trigger: AAGTCCGGCAGTTACCCTGCAACCACTTCTTTCACA...TGTGACATTAAATTGAGCAGCATATAGACGGGAGATGTGGGAGATTTTACTACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR-3UTR CCA 90 bp | TTTCTTGATTTGCTCTCTGATCATCAAGACAGAACAGCGTTAGAGTCTCAGACCGGAACAAGAGGCATTTaGTTGTCGATACAATTCCAC | + |
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Preference number: 2 (lower is better) Translates to: FLDLLSDHQDRTALESQTGTRGI*LSIQFH Trigger: GTGGAATTGTATCGACAACCAAATGCCTCTTGTTCC...GGTCTGAGACTCTAACGCTGTTCTGTCTTGATGATCAGAGAGCAAATCAAGAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029740.14 ENSMUST00000199051.5 |
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| 3UTR-3UTR CCA 90 bp | AGGAACAAGAGGCATTTGGTTGTCGATACAATTCCACCTGTAAGTCCTAACTTTTTGGCTCTATTATCTTaGTCCAGTGGATTGCTACTT | + |
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Preference number: 2 (lower is better) Translates to: RNKRHLVVDTIPPVSPNFLALLS*SSGLLL Trigger: AAGTAGCAATCCACTGGACCAAGATAATAGAGCCAA...AAAGTTAGGACTTACAGGTGGAATTGTATCGACAACCAAATGCCTCTTGTTCCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR-3UTR TCA 90 bp | CTCCACAATCTCCATTTATTCCATTTCAAACACGTACAGAGTATGTGTATGAGCTGGGGGTTTCTTACATaGTTCCTAAATCCATCTACT | + |
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Preference number: 2 (lower is better) Translates to: LHNLHLFHFKHVQSMCMSWGFLT*FLNPST Trigger: AGTAGATGGATTTAGGAATCATGTAAGAAACCCCCA...GCTCATACACATACTCTGTACGTGTTTGAAATGGAATAAATGGAGATTGTGGAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029740.14 ENSMUST00000199051.5 |
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| 3UTR-3UTR TCA 90 bp | CTCCACAATCTCCATTTATTCCATTTCAAACACGTACAGAGTATGTGTATGAGCCTTCTCTATTTGCTGTaGAATCCACTAATGGTAGGA | + |
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Preference number: 2 (lower is better) Translates to: LHNLHLFHFKHVQSMCMSLLYLL*NPLMVG Trigger: TCCTACCATTAGTGGATTTCACAGCAAATAGAGAAG...GCTCATACACATACTCTGTACGTGTTTGAAATGGAATAAATGGAGATTGTGGAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029740.14 ENSMUST00000199051.5 |
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| 3UTR-3UTR CCA 90 bp | TTTCCTTCCCACTGTAATTTTCTTGATTTGCTCTCTGATCATCAAGACAGAACAGGAACAAGAGGCATTTaGTTGTCGATACAATTCCAC | + |
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Preference number: 2 (lower is better) Translates to: FPSHCNFLDLLSDHQDRTGTRGI*LSIQFH Trigger: GTGGAATTGTATCGACAACCAAATGCCTCTTGTTCC...TGTTCTGTCTTGATGATCAGAGAGCAAATCAAGAAAATTACAGTGGGAAGGAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029740.14 ENSMUST00000199051.5 |
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| 3UTR CCA 72 bp | CCGTGTTTTCCAGCTGTCCTAGAAGCTGGGTTACAATaGCATCAAGGCCTGTCTGACCCCAGGCATAGTCCC | + |
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Preference number: 3 (lower is better) Translates to: PCFPAVLEAGLQ*HQGLSDPRHSP Trigger: GGGACTATGCCTGGGGTCAGACAGGCCTTGATGCCATTGTAACCCAGCTTCTAGGACAGCTGGAAAACACGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR-3UTR CAA 90 bp | TGTAACTGTTGGGAGAGATGTGATCTTCTCCTTGTCGGCTGGAGGGGGACCCGTTGTATCTTCTTGTCATaGGCAACCTTGGAGGCCGAC | + |
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Preference number: 3 (lower is better) Translates to: CNCWERCDLLLVGWRGTRCIFLS*ATLEAD Trigger: GTCGGCCTCCAAGGTTGCCAATGACAAGAAGATACA...ACGGGTCCCCCTCCAGCCGACAAGGAGAAGATCACATCTCTCCCAACAGTTACA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR CCA 72 bp | TCCGCGAGACCTGTATCTTCTTGTCATTGGCAACCTTaGAGGCCGACTTGGTCCCCAAAAGTCAGTGTGAGT | + |
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Preference number: 3 (lower is better) Translates to: SARPVSSCHWQP*RPTWSPKVSVS Trigger: ACTCACACTGACTTTTGGGGACCAAGTCGGCCTCCAAGGTTGCCAATGACAAGAAGATACAGGTCTCGCGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR CCA 72 bp | ACGAGTACTTCCGCGAGACCTGTATCTTCTTGTCATTaGCAACCTTGGAGGCCGACTTGGTCCCCAAAAGTC | + |
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Preference number: 3 (lower is better) Translates to: TSTSARPVSSCH*QPWRPTWSPKV Trigger: GACTTTTGGGGACCAAGTCGGCCTCCAAGGTTGCCAATGACAAGAAGATACAGGTCTCGCGGAAGTACTCGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR-3UTR CAA 90 bp | CTTTCTGGGCACCAACAGCTCCTCTGCGGCTCCACCGTGCGTGTCCTTTTGAGAAATCTTGTAAAAACATaGTGTGATCCAGATGGTCCC | + |
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Preference number: 3 (lower is better) Translates to: LSGHQQLLCGSTVRVLLRNLVKT*CDPDGP Trigger: GGGACCATCTGGATCACACAATGTTTTTACAAGATT...TCTCAAAAGGACACGCACGGTGGAGCCGCAGAGGAGCTGTTGGTGCCCAGAAAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR TCA 72 bp | CTGGGATTACAGGAGCCATGCCACAGGACTGGTCTCTaGACCATACCTCTAATGACAATCTTTAGCGGCAGG | + |
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Preference number: 3 (lower is better) Translates to: LGLQEPCHRTGL*TIPLMTIFSGR Trigger: CCTGCCGCTAAAGATTGTCATTAGAGGTATGGTTCAGAGACCAGTCCTGTGGCATGGCTCCTGTAATCCCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR CCA 72 bp | TCCTGCAAAGATCTGTTGTATTATTCCTTCGATAGCTaGCGACCTGTCGGGACGAGTACTTCCGCGAGACCT | + |
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Preference number: 3 (lower is better) Translates to: SCKDLLYYSFDS*RPVGTSTSARP Trigger: AGGTCTCGCGGAAGTACTCGTCCCGACAGGTCGCCAGCTATCGAAGGAATAATACAACAGATCTTTGCAGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR-3UTR CAA 90 bp | TGTAACTGTTGGGAGAGATGTGATCTTCTCCTTGTCGGCTGGAGGGGGACCCGTATTGGCTCTATTATCTaGGTCCAGTGGATTGCTACT | + |
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Preference number: 3 (lower is better) Translates to: CNCWERCDLLLVGWRGTRIGSII*VQWIAT Trigger: AGTAGCAATCCACTGGACCAAGATAATAGAGCCAAT...ACGGGTCCCCCTCCAGCCGACAAGGAGAAGATCACATCTCTCCCAACAGTTACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR-3UTR CAA 90 bp | GGAGGGGGACCCGTGTTTTCCAGCTGTCCTAGAAGCTGGGTTACAATGGCATCACAGGAATGGCAGAATTaGCAAAGAATCCTGCAAAGA | + |
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Preference number: 3 (lower is better) Translates to: GGGPVFSSCPRSWVTMASQEWQN*QRILQR Trigger: TCTTTGCAGGATTCTTTGCAAATTCTGCCATTCCTG...TGATGCCATTGTAACCCAGCTTCTAGGACAGCTGGAAAACACGGGTCCCCCTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR GCA 72 bp | AATCTGTTGCTTGCAGAGGCCTCAGAGCTCTGGGTTTaGCGAGTAGAGTCCTCACCATTTAAGCTCTTCCTA | + |
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Preference number: 3 (lower is better) Translates to: NLLLAEASELWV*RVESSPFKLFL Trigger: TAGGAAGAGCTTAAATGGTGAGGACTCTACTCGGCAAACCCAGAGCTCTGAGGCCTCTGCAAGCAACAGATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR CCA 72 bp | GTATCTTCTTGTCATTGGCAACCTTGGAGGCCGACTTaGTCCCCAAAAGTCAGTGTGAGTTTGGTGACCTCT | + |
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Preference number: 3 (lower is better) Translates to: VSSCHWQPWRPT*SPKVSVSLVTS Trigger: AGAGGTCACCAAACTCACACTGACTTTTGGGGACCAAGTCGGCCTCCAAGGTTGCCAATGACAAGAAGATAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR TCA 72 bp | CCTCACCAAATTATAGCGCCCTTGTTCTGCTCATTCTaGACTATGAAGCACTATAGTCACTCCACACATGGA | + |
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Preference number: 3 (lower is better) Translates to: PHQIIAPLFCSF*TMKHYSHSTHG Trigger: TCCATGTGTGGAGTGACTATAGTGCTTCATAGTTCAGAATGAGCAGAACAAGGGCGCTATAATTTGGTGAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR TCA 72 bp | CTCACTAGGTGGTCTAGGCTGTCCTTGAACTCACTATaGAACCTAGGCAAACCTTTACATTGTGATCATCCT | + |
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Preference number: 3 (lower is better) Translates to: LTRWSRLSLNSL*NLGKPLHCDHP Trigger: AGGATGATCACAATGTAAAGGTTTGCCTAGGTTTCATAGTGAGTTCAAGGACAGCCTAGACCACCTAGTGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR-3UTR CAA 90 bp | TTTCTTGATTTGCTCTCTGATCATCAAGACAGAACAGCGTTAGAGTCTCAGACCAGGAACAAGAGGCATTaGGTTGTCGATACAATTCCA | + |
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Preference number: 3 (lower is better) Translates to: FLDLLSDHQDRTALESQTRNKRH*VVDTIP Trigger: TGGAATTGTATCGACAACCAAATGCCTCTTGTTCCT...GGTCTGAGACTCTAACGCTGTTCTGTCTTGATGATCAGAGAGCAAATCAAGAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029740.14 ENSMUST00000199051.5 |
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| 3UTR-3UTR CAA 90 bp | TTTCTTGATTTGCTCTCTGATCATCAAGACAGAACAGCGTTAGAGTCTCAGACCTCTTGGTCCAGTGGATaGCTACTTAGAAATGGTCTA | + |
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Preference number: 3 (lower is better) Translates to: FLDLLSDHQDRTALESQTSWSSG*LLRNGL Trigger: TAGACCATTTCTAAGTAGCAATCCACTGGACCAAGA...GGTCTGAGACTCTAACGCTGTTCTGTCTTGATGATCAGAGAGCAAATCAAGAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR-3UTR CAA 90 bp | AGTAGTAAAATCTCCCACATCTCCCGTCTATATGCTGCTCAATTTAATGTCACAGAGACCTGTATCTTCTaGTCATTGGCAACCTTGGAG | + |
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Preference number: 3 (lower is better) Translates to: SSKISHISRLYAAQFNVTETCIF*SLATLE Trigger: CTCCAAGGTTGCCAATGACAAGAAGATACAGGTCTC...TGTGACATTAAATTGAGCAGCATATAGACGGGAGATGTGGGAGATTTTACTACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR TCA 72 bp | CATACTGGACATTCTAAACCCGTATTGACTTGTTCCTaGGTTACTGTAACTGTTGGGAGAGATGTGATCTTC | + |
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Preference number: 3 (lower is better) Translates to: HTGHSKPVLTCS*VTVTVGRDVIF Trigger: GAAGATCACATCTCTCCCAACAGTTACAGTAACTCAGGAACAAGTCAATACGGGTTTAGAATGTCCAGTATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
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| 3UTR-3UTR CAA 90 bp | CTCCACAATCTCCATTTATTCCATTTCAAACACGTACAGAGTATGTGTATGAGCACAAGAGGCATTTGGTaGTCGATACAATTCCACCTG | + |
|
Preference number: 3 (lower is better) Translates to: LHNLHLFHFKHVQSMCMSTRGIW*SIQFHL Trigger: CAGGTGGAATTGTATCGACAACCAAATGCCTCTTGT...GCTCATACACATACTCTGTACGTGTTTGAAATGGAATAAATGGAGATTGTGGAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029740.14 ENSMUST00000199051.5 |
||
| 3UTR-3UTR CAA 90 bp | CAAGACAACATAACAGTAGAACCCTACCTAGACTTTAAGGAATTGATTCTACTCACAAGAGGCATTTGGTaGTCGATACAATTCCACCTG | + |
|
Preference number: 3 (lower is better) Translates to: QDNITVEPYLDFKELILLTRGIW*SIQFHL Trigger: CAGGTGGAATTGTATCGACAACCAAATGCCTCTTGT...GAGTAGAATCAATTCCTTAAAGTCTAGGTAGGGTTCTACTGTTATGTTGTCTTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029740.14 ENSMUST00000199051.5 |
||
| 3UTR TCA 72 bp | ATTTATTCCATTTCAAACACGTACAGAGTATGTGTATaGGCATCGCTAGAATGTAAAACACAATCTACCTTC | + |
|
Preference number: 3 (lower is better) Translates to: IYSISNTYRVCV*ASLECKTQSTF Trigger: GAAGGTAGATTGTGTTTTACATTCTAGCGATGCTCATACACATACTCTGTACGTGTTTGAAATGGAATAAAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029740.14 ENSMUST00000199051.5 |
||
| 3UTR CAA 72 bp | TGTCGGGACGAGTACTTCCGCGAGACCTGTATCTTCTaGTCATTGGCAACCTTGGAGGCCGACTTGGTCCCC | + |
|
Preference number: 4 (lower is better) Translates to: CRDEYFRETCIF*SLATLEADLVP Trigger: GGGGACCAAGTCGGCCTCCAAGGTTGCCAATGACAAGAAGATACAGGTCTCGCGGAAGTACTCGTCCCGACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
||
| 3UTR CAA 72 bp | TTCCGCGAGACCTGTATCTTCTTGTCATTGGCAACCTaGGAGGCCGACTTGGTCCCCAAAAGTCAGTGTGAG | + |
|
Preference number: 4 (lower is better) Translates to: FRETCIFLSLAT*EADLVPKSQCE Trigger: CTCACACTGACTTTTGGGGACCAAGTCGGCCTCCAAGGTTGCCAATGACAAGAAGATACAGGTCTCGCGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
||
| CDS-3UTR GCA 90 bp | GATACAATTTACAGCTATGATAACAGGACTAACGCAGGCAGCCCTGGTTCAGGTTCCCCAGGGTTGGAGTaGAGCATCCCGCTCCAAGAA | + |
|
Preference number: 4 (lower is better) Translates to: DTIYSYDNRTNAGSPGSGSPGLE*SIPLQE Trigger: TTCTTGGAGCGGGATGCTGCACTCCAACCCTGGGGA...ACCTGAACCAGGGCTGCCTGCGTTAGTCCTGTTATCATAGCTGTAAATTGTATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029740.14 |
||
| CDS-3UTR CCA 90 bp | GATACAATTTACAGCTATGATAACAGGACTAACGCAGGCAGCCCTGGTTCAGGTCTTCTCCTTGTCGGCTaGAGGGGGACCCGTGTTTTC | + |
|
Preference number: 4 (lower is better) Translates to: DTIYSYDNRTNAGSPGSGLLLVG*RGTRVF Trigger: GAAAACACGGGTCCCCCTCCAGCCGACAAGGAGAAG...ACCTGAACCAGGGCTGCCTGCGTTAGTCCTGTTATCATAGCTGTAAATTGTATC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029740.14 |
||
| 3UTR CAA 72 bp | TGTATCTTCTTGTCATTGGCAACCTTGGAGGCCGACTaGGTCCCCAAAAGTCAGTGTGAGTTTGGTGACCTC | + |
|
Preference number: 4 (lower is better) Translates to: CIFLSLATLEAD*VPKSQCEFGDL Trigger: GAGGTCACCAAACTCACACTGACTTTTGGGGACCAAGTCGGCCTCCAAGGTTGCCAATGACAAGAAGATACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
||
| CDS-3UTR GCA 90 bp | GATACAATTTACAGCTATGATAACAGGACTAACGCAGGCAGCCCTGGTTCAGGTAGGGCACGATGCAGCTaGTGTGAAAGAAGTGGTTGC | + |
|
Preference number: 4 (lower is better) Translates to: DTIYSYDNRTNAGSPGSGRARCS*CERSGC Trigger: GCAACCACTTCTTTCACAGCAGCTGCATCGTGCCCT...ACCTGAACCAGGGCTGCCTGCGTTAGTCCTGTTATCATAGCTGTAAATTGTATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029740.14 |
||
| 3UTR CAA 72 bp | TTTCAGAAAGTCCATCGGTCATGTAGCTGGCTGTCATaGCTAAATCTGTTGCTTGCAGAGGCCTCAGAGCTC | + |
|
Preference number: 4 (lower is better) Translates to: FQKVHRSCSWLS*LNLLLAEASEL Trigger: GAGCTCTGAGGCCTCTGCAAGCAACAGATTTAGCAATGACAGCCAGCTACATGACCGATGGACTTTCTGAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
||
| CDS-3UTR CCA 90 bp | CTCCACAATCTCCATTTATTCCATTTCAAACACGTACAGAGTATGTGTATGAGCCATAGTCCCCAGGGTTaGAGTGCAGCATCCCGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: LHNLHLFHFKHVQSMCMSHSPQG*SAASRS Trigger: GGAGCGGGATGCTGCACTCCAACCCTGGGGACTATG...GCTCATACACATACTCTGTACGTGTTTGAAATGGAATAAATGGAGATTGTGGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029740.14 |
||
| CDS-3UTR CCA 90 bp | GGCTATTATGTCAGCAGCCCTCACCCCGCCAATCTCCATCTCTTTCTTTTCACTAGCCTGAGTCACATCTaGGACATATATATTCCGGTA | + |
|
Preference number: 4 (lower is better) Translates to: GYYVSSPHPANLHLFLFTSLSHI*DIYIPV Trigger: TACCGGAATATATATGTCCCAGATGTGACTCAGGCT...AGTGAAAAGAAAGAGATGGAGATTGGCGGGGTGAGGGCTGCTGACATAATAGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
||
| CDS-3UTR GCA 90 bp | AGGAACAAGAGGCATTTGGTTGTCGATACAATTCCACCTGTAAGTCCTAACTTTTCAGAGCTCTGGGTTTaGCGAGTAGAGTCCTCACCA | + |
|
Preference number: 4 (lower is better) Translates to: RNKRHLVVDTIPPVSPNFSELWV*RVESSP Trigger: TGGTGAGGACTCTACTCGGCAAACCCAGAGCTCTGA...AAAGTTAGGACTTACAGGTGGAATTGTATCGACAACCAAATGCCTCTTGTTCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029740.14 |
||
| CDS-3UTR GCA 90 bp | CTCCACAATCTCCATTTATTCCATTTCAAACACGTACAGAGTATGTGTATGAGCACTGGGCATGTGTCATaGAGTTCTAACCAGGGCACG | + |
|
Preference number: 4 (lower is better) Translates to: LHNLHLFHFKHVQSMCMSTGHVS*SSNQGT Trigger: CGTGCCCTGGTTAGAACTGCATGACACATGCCCAGT...GCTCATACACATACTCTGTACGTGTTTGAAATGGAATAAATGGAGATTGTGGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029740.14 |
||
| CDS-3UTR CCA 90 bp | CTCCACAATCTCCATTTATTCCATTTCAAACACGTACAGAGTATGTGTATGAGCCCAAGAAAAGGGGTGTaGGGATCCAGGAATGGCAGA | + |
|
Preference number: 4 (lower is better) Translates to: LHNLHLFHFKHVQSMCMSPRKGV*GSRNGR Trigger: TCTGCCATTCCTGGATCCCCACACCCCTTTTCTTGG...GCTCATACACATACTCTGTACGTGTTTGAAATGGAATAAATGGAGATTGTGGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029740.14 |
||
| CDS-3UTR CCA 90 bp | TTTCTTGATTTGCTCTCTGATCATCAAGACAGAACAGCGTTAGAGTCTCAGACCGCTCTTCCTACATACTaGGCATGTGTCATGCAGTTC | + |
|
Preference number: 4 (lower is better) Translates to: FLDLLSDHQDRTALESQTALPTY*ACVMQF Trigger: GAACTGCATGACACATGCCCAGTATGTAGGAAGAGC...GGTCTGAGACTCTAACGCTGTTCTGTCTTGATGATCAGAGAGCAAATCAAGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029740.14 |
||
| 3UTR CAA 72 bp | AATGGCAGAATTTGCAAAGAATCCTGCAAAGATCTGTaGTATTATTCCTTCGATAGCTGGCGACCTGTCGGG | + |
|
Preference number: 4 (lower is better) Translates to: NGRICKESCKDL*YYSFDSWRPVG Trigger: CCCGACAGGTCGCCAGCTATCGAAGGAATAATACAACAGATCTTTGCAGGATTCTTTGCAAATTCTGCCATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
||
| CDS-3UTR GCA 90 bp | AGGAACAAGAGGCATTTGGTTGTCGATACAATTCCACCTGTAAGTCCTAACTTTTGTGAAAGAAGTGGTTaGAGGGTAACTGCCGGACTT | + |
|
Preference number: 4 (lower is better) Translates to: RNKRHLVVDTIPPVSPNFCERSG*RVTAGL Trigger: AAGTCCGGCAGTTACCCTGCAACCACTTCTTTCACA...AAAGTTAGGACTTACAGGTGGAATTGTATCGACAACCAAATGCCTCTTGTTCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029740.14 |
||
| CDS-3UTR GCA 90 bp | CTCCACAATCTCCATTTATTCCATTTCAAACACGTACAGAGTATGTGTATGAGCCTAACCAGGGCACGATaGAGCTGCTGTGAAAGAAGT | + |
|
Preference number: 4 (lower is better) Translates to: LHNLHLFHFKHVQSMCMSLTRAR*SCCERS Trigger: ACTTCTTTCACAGCAGCTGCATCGTGCCCTGGTTAG...GCTCATACACATACTCTGTACGTGTTTGAAATGGAATAAATGGAGATTGTGGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029740.14 |
||
| CDS-3UTR GCA 90 bp | CTCCACAATCTCCATTTATTCCATTTCAAACACGTACAGAGTATGTGTATGAGCGCTAAATCTGTTGCTTaGAGAGGCCTCAGAGCTCTG | + |
|
Preference number: 4 (lower is better) Translates to: LHNLHLFHFKHVQSMCMSAKSVA*RGLRAL Trigger: CAGAGCTCTGAGGCCTCTGCAAGCAACAGATTTAGC...GCTCATACACATACTCTGTACGTGTTTGAAATGGAATAAATGGAGATTGTGGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029740.14 |
||
| CDS-3UTR CCA 90 bp | TTTCCTTCCCACTGTAATTTTCTTGATTTGCTCTCTGATCATCAAGACAGAACAGAAGCTGGGTTACAATaGCATCAAGGCCTGTCTGAC | + |
|
Preference number: 4 (lower is better) Translates to: FPSHCNFLDLLSDHQDRTEAGLQ*HQGLSD Trigger: GTCAGACAGGCCTTGATGCCATTGTAACCCAGCTTC...TGTTCTGTCTTGATGATCAGAGAGCAAATCAAGAAAATTACAGTGGGAAGGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029740.14 |
||
| CDS-3UTR TCA 90 bp | AGGAACAAGAGGCATTTGGTTGTCGATACAATTCCACCTGTAAGTCCTAACTTTTTCCTCAATAAAGCCTaGGTCACATCTGGGACATAT | + |
|
Preference number: 4 (lower is better) Translates to: RNKRHLVVDTIPPVSPNFFLNKA*VTSGTY Trigger: ATATGTCCCAGATGTGACTCAGGCTTTATTGAGGAA...AAAGTTAGGACTTACAGGTGGAATTGTATCGACAACCAAATGCCTCTTGTTCCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029740.14 ENSMUST00000199051.5 |
||
| CDS-3UTR GCA 90 bp | TTTCCTTCCCACTGTAATTTTCTTGATTTGCTCTCTGATCATCAAGACAGAACAATGGTCCCAAAGCTCTaGAAAATGTGTCGCTGTGCT | + |
|
Preference number: 4 (lower is better) Translates to: FPSHCNFLDLLSDHQDRTMVPKL*KMCRCA Trigger: AGCACAGCGACACATTTTGCAGAGCTTTGGGACCAT...TGTTCTGTCTTGATGATCAGAGAGCAAATCAAGAAAATTACAGTGGGAAGGAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029740.14 |
||
| CDS-3UTR CCA 90 bp | CAAGACAACATAACAGTAGAACCCTACCTAGACTTTAAGGAATTGATTCTACTCGTATCTTCTTGTCATTaGCAACCTTGGAGGCCGACT | + |
|
Preference number: 4 (lower is better) Translates to: QDNITVEPYLDFKELILLVSSCH*QPWRPT Trigger: AGTCGGCCTCCAAGGTTGCCAATGACAAGAAGATAC...GAGTAGAATCAATTCCTTAAAGTCTAGGTAGGGTTCTACTGTTATGTTGTCTTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029740.14 |
||
| CDS-3UTR CCA 90 bp | CTCCACAATCTCCATTTATTCCATTTCAAACACGTACAGAGTATGTGTATGAGCCATCGGTCATGTAGCTaGCTGTCATTGCTAAATCTG | + |
|
Preference number: 4 (lower is better) Translates to: LHNLHLFHFKHVQSMCMSHRSCS*LSLLNL Trigger: CAGATTTAGCAATGACAGCCAGCTACATGACCGATG...GCTCATACACATACTCTGTACGTGTTTGAAATGGAATAAATGGAGATTGTGGAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029740.14 |
||
| CDS-3UTR CCA 90 bp | AGTAGTAAAATCTCCCACATCTCCCGTCTATATGCTGCTCAATTTAATGTCACAAGCCTGAGTCACATCTaGGACATATATATTCCGGTA | + |
|
Preference number: 4 (lower is better) Translates to: SSKISHISRLYAAQFNVTSLSHI*DIYIPV Trigger: TACCGGAATATATATGTCCCAGATGTGACTCAGGCT...TGTGACATTAAATTGAGCAGCATATAGACGGGAGATGTGGGAGATTTTACTACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029740.14 ENSMUST00000199051.5 |
||
| CDS-3UTR TCA 90 bp | TTTCCTTCCCACTGTAATTTTCTTGATTTGCTCTCTGATCATCAAGACAGAACATTCCTCAATAAAGCCTaGGTCACATCTGGGACATAT | + |
|
Preference number: 4 (lower is better) Translates to: FPSHCNFLDLLSDHQDRTFLNKA*VTSGTY Trigger: ATATGTCCCAGATGTGACTCAGGCTTTATTGAGGAA...TGTTCTGTCTTGATGATCAGAGAGCAAATCAAGAAAATTACAGTGGGAAGGAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029740.14 ENSMUST00000199051.5 |
||
| CDS-3UTR CCA 90 bp | AGTAGTAAAATCTCCCACATCTCCCGTCTATATGCTGCTCAATTTAATGTCACATTGGCTCTATTATCTTaGTCCAGTGGATTGCTACTT | + |
|
Preference number: 4 (lower is better) Translates to: SSKISHISRLYAAQFNVTLALLS*SSGLLL Trigger: AAGTAGCAATCCACTGGACCAAGATAATAGAGCCAA...TGTGACATTAAATTGAGCAGCATATAGACGGGAGATGTGGGAGATTTTACTACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029740.14 |
||
| CDS-3UTR CCA 90 bp | CAAGACAACATAACAGTAGAACCCTACCTAGACTTTAAGGAATTGATTCTACTCAGTTACTGTAACTGTTaGGAGAGATGTGATCTTCTC | + |
|
Preference number: 4 (lower is better) Translates to: QDNITVEPYLDFKELILLSYCNC*ERCDLL Trigger: GAGAAGATCACATCTCTCCCAACAGTTACAGTAACT...GAGTAGAATCAATTCCTTAAAGTCTAGGTAGGGTTCTACTGTTATGTTGTCTTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029740.14 |
||
| 3UTR CAA 72 bp | CCTCTCTCATTGGCTCTATTATCTTGGTCCAGTGGATaGCTACTTAGAAATGGTCTAAAATCTTGTAAAAAC | + |
|
Preference number: 4 (lower is better) Translates to: PLSLALLSWSSG*LLRNGLKSCKN Trigger: GTTTTTACAAGATTTTAGACCATTTCTAAGTAGCAATCCACTGGACCAAGATAATAGAGCCAATGAGAGAGG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000199051.5 |
||
| CDS-3UTR CAA 90 bp | TTTCTTGATTTGCTCTCTGATCATCAAGACAGAACAGCGTTAGAGTCTCAGACCGATGTGATCTTCTCCTaGTCGGCTGGAGGGGGACCC | + |
|
Preference number: 5 (lower is better) Translates to: FLDLLSDHQDRTALESQTDVIFS*SAGGGP Trigger: GGGTCCCCCTCCAGCCGACAAGGAGAAGATCACATC...GGTCTGAGACTCTAACGCTGTTCTGTCTTGATGATCAGAGAGCAAATCAAGAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029740.14 |
||
| CDS-3UTR CAA 90 bp | CTCCACAATCTCCATTTATTCCATTTCAAACACGTACAGAGTATGTGTATGAGCCTCAGAGCTCTGGGTTaGCCGAGTAGAGTCCTCACC | + |
|
Preference number: 5 (lower is better) Translates to: LHNLHLFHFKHVQSMCMSLRALG*PSRVLT Trigger: GGTGAGGACTCTACTCGGCAAACCCAGAGCTCTGAG...GCTCATACACATACTCTGTACGTGTTTGAAATGGAATAAATGGAGATTGTGGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029740.14 |
||
| CDS-3UTR CAA 90 bp | GATACAATTTACAGCTATGATAACAGGACTAACGCAGGCAGCCCTGGTTCAGGTTCTTGGTCCAGTGGATaGCTACTTAGAAATGGTCTA | + |
|
Preference number: 5 (lower is better) Translates to: DTIYSYDNRTNAGSPGSGSWSSG*LLRNGL Trigger: TAGACCATTTCTAAGTAGCAATCCACTGGACCAAGA...ACCTGAACCAGGGCTGCCTGCGTTAGTCCTGTTATCATAGCTGTAAATTGTATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029740.14 |
||
| CDS-3UTR CAA 90 bp | GATACAATTTACAGCTATGATAACAGGACTAACGCAGGCAGCCCTGGTTCAGGTCAGGAATGGCAGAATTaGCAAAGAATCCTGCAAAGA | + |
|
Preference number: 5 (lower is better) Translates to: DTIYSYDNRTNAGSPGSGQEWQN*QRILQR Trigger: TCTTTGCAGGATTCTTTGCAAATTCTGCCATTCCTG...ACCTGAACCAGGGCTGCCTGCGTTAGTCCTGTTATCATAGCTGTAAATTGTATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029740.14 |
||
| CDS-3UTR CAA 90 bp | AGTAGTAAAATCTCCCACATCTCCCGTCTATATGCTGCTCAATTTAATGTCACATGTATCTTCTTGTCATaGGCAACCTTGGAGGCCGAC | + |
|
Preference number: 5 (lower is better) Translates to: SSKISHISRLYAAQFNVTCIFLS*ATLEAD Trigger: GTCGGCCTCCAAGGTTGCCAATGACAAGAAGATACA...TGTGACATTAAATTGAGCAGCATATAGACGGGAGATGTGGGAGATTTTACTACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029740.14 |
||
| CDS-3UTR CAA 90 bp | TTTCTTGATTTGCTCTCTGATCATCAAGACAGAACAGCGTTAGAGTCTCAGACCTGTAGCTGGCTGTCATaGCTAAATCTGTTGCTTGCA | + |
|
Preference number: 5 (lower is better) Translates to: FLDLLSDHQDRTALESQTCSWLS*LNLLLA Trigger: TGCAAGCAACAGATTTAGCAATGACAGCCAGCTACA...GGTCTGAGACTCTAACGCTGTTCTGTCTTGATGATCAGAGAGCAAATCAAGAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029740.14 |
||
| CDS-3UTR CAA 90 bp | CAAGACAACATAACAGTAGAACCCTACCTAGACTTTAAGGAATTGATTCTACTCGAGACCTGTATCTTCTaGTCATTGGCAACCTTGGAG | + |
|
Preference number: 5 (lower is better) Translates to: QDNITVEPYLDFKELILLETCIF*SLATLE Trigger: CTCCAAGGTTGCCAATGACAAGAAGATACAGGTCTC...GAGTAGAATCAATTCCTTAAAGTCTAGGTAGGGTTCTACTGTTATGTTGTCTTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029740.14 |
||
| CDS-3UTR CAA 90 bp | AGGAACAAGAGGCATTTGGTTGTCGATACAATTCCACCTGTAAGTCCTAACTTTAATCTTGTAAAAACATaGTGTGATCCAGATGGTCCC | + |
|
Preference number: 5 (lower is better) Translates to: RNKRHLVVDTIPPVSPNFNLVKT*CDPDGP Trigger: GGGACCATCTGGATCACACAATGTTTTTACAAGATT...AAAGTTAGGACTTACAGGTGGAATTGTATCGACAACCAAATGCCTCTTGTTCCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029740.14 |
||
| CDS-3UTR CAA 90 bp | AGTAGTAAAATCTCCCACATCTCCCGTCTATATGCTGCTCAATTTAATGTCACAATTGGCTCTATTATCTaGGTCCAGTGGATTGCTACT | + |
|
Preference number: 5 (lower is better) Translates to: SSKISHISRLYAAQFNVTIGSII*VQWIAT Trigger: AGTAGCAATCCACTGGACCAAGATAATAGAGCCAAT...TGTGACATTAAATTGAGCAGCATATAGACGGGAGATGTGGGAGATTTTACTACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029740.14 |
||
| CDS GCA 72 bp | CCAGATGGTCCCAAAGCTCTGCAAAATGTGTCGCTGTaGTATTGTCTGTCCGGCTTCCACCACCACCTAAAA | + |
|
Preference number: 6 (lower is better) Translates to: PDGPKALQNVSL*YCLSGFHHHLK Trigger: TTTTAGGTGGTGGTGGAAGCCGGACAGACAATAGCACAGCGACACATTTTGCAGAGCTTTGGGACCATCTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029740.14 |
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