RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RNF113A2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000098134

Ensembl transcript IDs: ENSMUST00000183146.2

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp CCCGCTTCTTCTCCGGTCGCACAACCGAGCATCCTTCGTCGCTACTaGTTCCGCTTTCCCCAGACTCCGGGTCGCACGCCGGCCGCTTCC +
Preference number: 5 (lower is better)
Translates to: PASSPVAQPSILRRY*FRFPQTPGRTPAAS
Trigger: GGAAGCGGCCGGCGTGCGACCCGGAGTCTGGGGAAAGCGGAAGCAGTAGCGACGAAGGATGCTCGGTTGTGCGACCGGAGAAGAAGCGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183146.2
CDS CCA 90 bp CCTTTCTGTTTACCGCTGCCACTCGTCTTCTGGATCATCGGATTGTaGGCCGCCCGCTTCTTCTCCGGTCGCACAACCGAGCATCCTTCG +
Preference number: 5 (lower is better)
Translates to: PFCLPLPLVFWIIGL*AARFFSGRTTEHPS
Trigger: CGAAGGATGCTCGGTTGTGCGACCGGAGAAGAAGCGGGCGGCCCACAATCCGATGATCCAGAAGACGAGTGGCAGCGGTAAACAGAAAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183146.2
CDS GCA 90 bp CCTCTTCGCTGCTCAGATCACAGTAGGCCCCTTTCTGTTTACCGCTaGCACTCGTCTTCTGGATCATCGGATTGTGGGCCGCCCGCTTCT +
Preference number: 5 (lower is better)
Translates to: PLRCSDHSRPLSVYR*HSSSGSSDCGPPAS
Trigger: AGAAGCGGGCGGCCCACAATCCGATGATCCAGAAGACGAGTGGCAGCGGTAAACAGAAAGGGGCCTACTGTGATCTGAGCAGCGAAGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183146.2
CDS GCA 90 bp AGACGACGCCTAGACTCTCATTCCCCGCCTTCTCCTCCTCTTCGCTaGTCAGATCACAGTAGGCCCCTTTCTGTTTACCGCTGCCACTCG +
Preference number: 5 (lower is better)
Translates to: RRRLDSHSPPSPPLR*SDHSRPLSVYRCHS
Trigger: CGAGTGGCAGCGGTAAACAGAAAGGGGCCTACTGTGATCTGAGCAGCGAAGAGGAGGAGAAGGCGGGGAATGAGAGTCTAGGCGTCGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183146.2
CDS GCA 90 bp TCTCAGCTCCTCCTGGATTTTCTGACTGCGCTCAAAAATGGCCTGTaGGTCTCGTTCTTTCTCAGTGTCCAACTCGTAAACTGCTGTGGC +
Preference number: 5 (lower is better)
Translates to: SQLLLDFLTALKNGL*VSFFLSVQLVNCCG
Trigger: GCCACAGCAGTTTACGAGTTGGACACTGAGAAAGAACGAGACGCACAGGCCATTTTTGAGCGCAGTCAGAAAATCCAGGAGGAGCTGAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000183146.2
CDS GCA 90 bp TTAGATCCCATCGGCGTCTTCTGGGGTGCTGGAAGCACCACCCTCTaGTTTTCGATACTTCTCCAGTTTAGCAATCAGTTCTTTCGCAGG +
Preference number: 5 (lower is better)
Translates to: LDPIGVFWGAGSTTL*FSILLQFSNQFFRR
Trigger: CCTGCGAAAGAACTGATTGCTAAACTGGAGAAGTATCGAAAAGCAGAGGGTGGTGCTTCCAGCACCCCAGAAGACGCCGATGGGATCTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183146.2
CDS CCA 90 bp CCTTGCCTCTCAGCTCCTCCTGGATTTTCTGACTGCGCTCAAAAATaGCCTGTGCGTCTCGTTCTTTCTCAGTGTCCAACTCGTAAACTG +
Preference number: 5 (lower is better)
Translates to: PCLSAPPGFSDCAQK*PVRLVLSQCPTRKL
Trigger: CAGTTTACGAGTTGGACACTGAGAAAGAACGAGACGCACAGGCCATTTTTGAGCGCAGTCAGAAAATCCAGGAGGAGCTGAGAGGCAAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000183146.2
CDS CCA 90 bp AGGATTGAAAACCCCATGGGTCTGTTGCTCACAAACATAGCATCGTaGAGTGGTTCGGAAATGCTGCAGTGCACAGGTCTCACAGAAATA +
Preference number: 5 (lower is better)
Translates to: RIENPMGLLLTNIAS*SGSEMLQCTGLTEI
Trigger: TATTTCTGTGAGACCTGTGCACTGCAGCATTTCCGAACCACTCCACGATGCTATGTTTGTGAGCAACAGACCCATGGGGTTTTCAATCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183146.2
CDS GCA 72 bp TCTCCGGTCGCACAACCGAGCATCCTTCGTCGCTACTaGTTCCGCTTTCCCCAGACTCCGGGTCGCACGCCG +
Preference number: 6 (lower is better)
Translates to: SPVAQPSILRRY*FRFPQTPGRTP
Trigger: CGGCGTGCGACCCGGAGTCTGGGGAAAGCGGAAGCAGTAGCGACGAAGGATGCTCGGTTGTGCGACCGGAGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183146.2
CDS CAA 90 bp GCCCCTTTCTGTTTACCGCTGCCACTCGTCTTCTGGATCATCGGATaGTGGGCCGCCCGCTTCTTCTCCGGTCGCACAACCGAGCATCCT +
Preference number: 6 (lower is better)
Translates to: APFCLPLPLVFWIIG*WAARFFSGRTTEHP
Trigger: AGGATGCTCGGTTGTGCGACCGGAGAAGAAGCGGGCGGCCCACAATCCGATGATCCAGAAGACGAGTGGCAGCGGTAAACAGAAAGGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183146.2
CDS CCA 72 bp CTCGTTCTTTCTCAGTGTCCAACTCGTAAACTGCTGTaGCCCCCATATCCTCGGGCCCCACCGGTTTCGCCG +
Preference number: 6 (lower is better)
Translates to: LVLSQCPTRKLL*PPYPRAPPVSP
Trigger: CGGCGAAACCGGTGGGGCCCGAGGATATGGGGGCCACAGCAGTTTACGAGTTGGACACTGAGAAAGAACGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000183146.2
CDS GCA 72 bp TGCTCAGATCACAGTAGGCCCCTTTCTGTTTACCGCTaGCACTCGTCTTCTGGATCATCGGATTGTGGGCCG +
Preference number: 6 (lower is better)
Translates to: CSDHSRPLSVYR*HSSSGSSDCGP
Trigger: CGGCCCACAATCCGATGATCCAGAAGACGAGTGGCAGCGGTAAACAGAAAGGGGCCTACTGTGATCTGAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183146.2
CDS GCA 72 bp CTAGACTCTCATTCCCCGCCTTCTCCTCCTCTTCGCTaGTCAGATCACAGTAGGCCCCTTTCTGTTTACCGC +
Preference number: 6 (lower is better)
Translates to: LDSHSPPSPPLR*SDHSRPLSVYR
Trigger: GCGGTAAACAGAAAGGGGCCTACTGTGATCTGAGCAGCGAAGAGGAGGAGAAGGCGGGGAATGAGAGTCTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183146.2
CDS CCA 72 bp AACCCCATGGGTCTGTTGCTCACAAACATAGCATCGTaGAGTGGTTCGGAAATGCTGCAGTGCACAGGTCTC +
Preference number: 6 (lower is better)
Translates to: NPMGLLLTNIAS*SGSEMLQCTGL
Trigger: GAGACCTGTGCACTGCAGCATTTCCGAACCACTCCACGATGCTATGTTTGTGAGCAACAGACCCATGGGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183146.2
CDS CCA 72 bp CATGGGTCTGTTGCTCACAAACATAGCATCGTGGAGTaGTTCGGAAATGCTGCAGTGCACAGGTCTCACAGA +
Preference number: 6 (lower is better)
Translates to: HGSVAHKHSIVE*FGNAAVHRSHR
Trigger: TCTGTGAGACCTGTGCACTGCAGCATTTCCGAACCACTCCACGATGCTATGTTTGTGAGCAACAGACCCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183146.2
CDS CCA 72 bp TCAGCTCCTCCTGGATTTTCTGACTGCGCTCAAAAATaGCCTGTGCGTCTCGTTCTTTCTCAGTGTCCAACT +
Preference number: 6 (lower is better)
Translates to: SAPPGFSDCAQK*PVRLVLSQCPT
Trigger: AGTTGGACACTGAGAAAGAACGAGACGCACAGGCCATTTTTGAGCGCAGTCAGAAAATCCAGGAGGAGCTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000183146.2
CDS GCA 72 bp CTCCTGGATTTTCTGACTGCGCTCAAAAATGGCCTGTaGGTCTCGTTCTTTCTCAGTGTCCAACTCGTAAAC +
Preference number: 6 (lower is better)
Translates to: LLDFLTALKNGL*VSFFLSVQLVN
Trigger: GTTTACGAGTTGGACACTGAGAAAGAACGAGACGCACAGGCCATTTTTGAGCGCAGTCAGAAAATCCAGGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000183146.2
CDS CAA 72 bp CAGTTCTTTCGCAGGATTGAAAACCCCATGGGTCTGTaGCTCACAAACATAGCATCGTGGAGTGGTTCGGAA +
Preference number: 6 (lower is better)
Translates to: QFFRRIENPMGL*LTNIASWSGSE
Trigger: TTCCGAACCACTCCACGATGCTATGTTTGTGAGCAACAGACCCATGGGGTTTTCAATCCTGCGAAAGAACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183146.2
CDS CAA 72 bp ACCGGATTCTGGAAGGTTTGGCGACAGATGAAACATTaGAATGGTATCTCCTCATCATCACTTTCTACTTCA +
Preference number: 6 (lower is better)
Translates to: TGFWKVWRQMKH*NGISSSSLSTS
Trigger: TGAAGTAGAAAGTGATGATGAGGAGATACCATTCAAATGTTTCATCTGTCGCCAAACCTTCCAGAATCCGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183146.2