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Pregenerated sensors for RNF113A1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036537

Ensembl transcript IDs: ENSMUST00000046433.7

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp CTTGCTTCTTCTCCGGGCGGACCACAGAGCTGCCTTCATCACTGCTaGTGCAGCTGTCCCCGGAGCCTGCATCACAGAGCCGGCGCTTTC +
Preference number: 5 (lower is better)
Translates to: LASSPGGPQSCLHHC*CSCPRSLHHRAGAF
Trigger: GAAAGCGCCGGCTCTGTGATGCAGGCTCCGGGGACAGCTGCAGCAGCAGTGATGAAGGCAGCTCTGTGGTCCGCCCGGAGAAGAAGCAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046433.7
CDS GCA 90 bp TCGGATTGTGGGTCGCTTGCTTCTTCTCCGGGCGGACCACAGAGCTaGCTTCATCACTGCTGCTGCAGCTGTCCCCGGAGCCTGCATCAC +
Preference number: 5 (lower is better)
Translates to: SDCGSLASSPGGPQS*LHHCCCSCPRSLHH
Trigger: GTGATGCAGGCTCCGGGGACAGCTGCAGCAGCAGTGATGAAGGCAGCTCTGTGGTCCGCCCGGAGAAGAAGCAAGCGACCCACAATCCGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046433.7
CDS GCA 90 bp TTAGCGCTGCCACGCGTCTTCTGGATCATCGGATTGTGGGTCGCTTaGTTCTTCTCCGGGCGGACCACAGAGCTGCCTTCATCACTGCTG +
Preference number: 5 (lower is better)
Translates to: LALPRVFWIIGLWVA*FFSGRTTELPSSLL
Trigger: CAGCAGTGATGAAGGCAGCTCTGTGGTCCGCCCGGAGAAGAAGCAAGCGACCCACAATCCGATGATCCAGAAGACGCGTGGCAGCGCTAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046433.7
CDS CCA 90 bp GCCTTCTGTTTAGCGCTGCCACGCGTCTTCTGGATCATCGGATTGTaGGTCGCTTGCTTCTTCTCCGGGCGGACCACAGAGCTGCCTTCA +
Preference number: 5 (lower is better)
Translates to: AFCLALPRVFWIIGL*VACFFSGRTTELPS
Trigger: TGAAGGCAGCTCTGTGGTCCGCCCGGAGAAGAAGCAAGCGACCCACAATCCGATGATCCAGAAGACGCGTGGCAGCGCTAAACAGAAGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046433.7
CDS GCA 90 bp CCTCAGCTCCTCCTGGATCTTCTGGCTCCGCTCAAAGATGGACTGTaGATCTCGATCCTTCTCAGTGTCCAGTTCGTAGACGGCGGTCGC +
Preference number: 5 (lower is better)
Translates to: PQLLLDLLAPLKDGL*ISILLSVQFVDGGR
Trigger: GCGACCGCCGTCTACGAACTGGACACTGAGAAGGATCGAGATGCACAGTCCATCTTTGAGCGGAGCCAGAAGATCCAGGAGGAGCTGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046433.7
CDS GCA 72 bp GCCTTCATCACTGCTGCTGCAGCTGTCCCCGGAGCCTaGATCACAGAGCCGGCGCTTTCGGCGGCCCGCCGC +
Preference number: 6 (lower is better)
Translates to: AFITAAAAVPGA*ITEPALSAARR
Trigger: GCGGCGGGCCGCCGAAAGCGCCGGCTCTGTGATGCAGGCTCCGGGGACAGCTGCAGCAGCAGTGATGAAGGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046433.7
CDS GCA 72 bp CCGGGCGGACCACAGAGCTGCCTTCATCACTGCTGCTaGAGCTGTCCCCGGAGCCTGCATCACAGAGCCGGC +
Preference number: 6 (lower is better)
Translates to: PGGPQSCLHHCC*SCPRSLHHRAG
Trigger: GCCGGCTCTGTGATGCAGGCTCCGGGGACAGCTGCAGCAGCAGTGATGAAGGCAGCTCTGTGGTCCGCCCGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046433.7
CDS GCA 72 bp GGGTCGCTTGCTTCTTCTCCGGGCGGACCACAGAGCTaGCTTCATCACTGCTGCTGCAGCTGTCCCCGGAGC +
Preference number: 6 (lower is better)
Translates to: GSLASSPGGPQS*LHHCCCSCPRS
Trigger: GCTCCGGGGACAGCTGCAGCAGCAGTGATGAAGGCAGCTCTGTGGTCCGCCCGGAGAAGAAGCAAGCGACCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046433.7
CDS GCA 72 bp TCTTCTCCGGGCGGACCACAGAGCTGCCTTCATCACTaGTGCTGCAGCTGTCCCCGGAGCCTGCATCACAGA +
Preference number: 6 (lower is better)
Translates to: SSPGGPQSCLHH*CCSCPRSLHHR
Trigger: TCTGTGATGCAGGCTCCGGGGACAGCTGCAGCAGCAGTGATGAAGGCAGCTCTGTGGTCCGCCCGGAGAAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046433.7
CDS CAA 72 bp GCCACGCGTCTTCTGGATCATCGGATTGTGGGTCGCTaGCTTCTTCTCCGGGCGGACCACAGAGCTGCCTTC +
Preference number: 6 (lower is better)
Translates to: ATRLLDHRIVGR*LLLRADHRAAF
Trigger: GAAGGCAGCTCTGTGGTCCGCCCGGAGAAGAAGCAAGCGACCCACAATCCGATGATCCAGAAGACGCGTGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046433.7
CDS GCA 72 bp CCACGCGTCTTCTGGATCATCGGATTGTGGGTCGCTTaGTTCTTCTCCGGGCGGACCACAGAGCTGCCTTCA +
Preference number: 6 (lower is better)
Translates to: PRVFWIIGLWVA*FFSGRTTELPS
Trigger: TGAAGGCAGCTCTGTGGTCCGCCCGGAGAAGAAGCAAGCGACCCACAATCCGATGATCCAGAAGACGCGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046433.7
CDS CAA 90 bp GTTGCCTTCTGTTTAGCGCTGCCACGCGTCTTCTGGATCATCGGATaGTGGGTCGCTTGCTTCTTCTCCGGGCGGACCACAGAGCTGCCT +
Preference number: 6 (lower is better)
Translates to: VAFCLALPRVFWIIG*WVACFFSGRTTELP
Trigger: AGGCAGCTCTGTGGTCCGCCCGGAGAAGAAGCAAGCGACCCACAATCCGATGATCCAGAAGACGCGTGGCAGCGCTAAACAGAAGGCAAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046433.7
CDS CAA 90 bp TTTAGCGCTGCCACGCGTCTTCTGGATCATCGGATTGTGGGTCGCTaGCTTCTTCTCCGGGCGGACCACAGAGCTGCCTTCATCACTGCT +
Preference number: 6 (lower is better)
Translates to: FSAATRLLDHRIVGR*LLLRADHRAAFITA
Trigger: AGCAGTGATGAAGGCAGCTCTGTGGTCCGCCCGGAGAAGAAGCAAGCGACCCACAATCCGATGATCCAGAAGACGCGTGGCAGCGCTAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046433.7
CDS GCA 72 bp CTCCTGGATCTTCTGGCTCCGCTCAAAGATGGACTGTaGATCTCGATCCTTCTCAGTGTCCAGTTCGTAGAC +
Preference number: 6 (lower is better)
Translates to: LLDLLAPLKDGL*ISILLSVQFVD
Trigger: GTCTACGAACTGGACACTGAGAAGGATCGAGATGCACAGTCCATCTTTGAGCGGAGCCAGAAGATCCAGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046433.7
CDS CAA 72 bp TCAGCTCGATGCTTTCCCAGTTTAGCAATCAGTTCTTaGGCTGGATTAAAGACGCCATTGGTCTGCTGGTCA +
Preference number: 6 (lower is better)
Translates to: SARCFPSLAISS*AGLKTPLVCWS
Trigger: TGACCAGCAGACCAATGGCGTCTTTAATCCAGCCAAAGAACTGATTGCTAAACTGGGAAAGCATCGAGCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046433.7